589 chr1 564476 564477 rs6650104 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,AFFY,ILLUMINA,SC_SNP, 2 A,G, 5006.000000,2.000000, 0.999601,0.000399, maf-5-some-pop 589 chr1 564620 564621 rs10458597 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.045009 0.143104 near-gene-5 exact 1 5 AFFY,BGI,KRIBB_YJKIM,SC_SNP,SSAHASNP, 2 C,T, 721.000000,17.000000, 0.976965,0.023035, maf-5-some-pop 589 chr1 565399 565400 rs8179414 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,AFFY,BGI,SC_SNP,SSAHASNP, 2 C,T, 4987.000000,21.000000, 0.995807,0.004193, 589 chr1 566809 566810 rs9645428 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 3.000000,5005.000000, 0.000599,0.999401, 589 chr1 569603 569604 rs9645429 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BROAD,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 38.000000,4970.000000, 0.007588,0.992412, maf-5-some-pop 590 chr1 721289 721290 rs12565286 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 590 chr1 740856 740857 rs12082473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ENSEMBL,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 590 chr1 752565 752566 rs3094315 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3597.000000,1411.000000,1411.000000,3597.000000, 0.359125,0.140875,0.140875,0.359125, maf-5-some-pop,genotype-conflict 590 chr1 761731 761732 rs2286139 0 - C C A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PJP,SC_JCM,SSMP,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3134.000000,1874.000000,1874.000000,3134.000000, 0.312899,0.187101,0.187101,0.312899, maf-5-some-pop,maf-5-all-pops 590 chr1 765268 765269 rs11240776 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 4975.000000,33.000000, 0.993411,0.006589, 590 chr1 777121 777122 rs2980319 0 - A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 780026 780027 rs2977613 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4906.000000,102.000000,102.000000,4906.000000, 0.489816,0.010184,0.010184,0.489816, maf-5-some-pop 590 chr1 785988 785989 rs2980300 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop,maf-5-all-pops,genotype-conflict 591 chr1 792479 792480 rs2905036 0 - C C A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4892.000000,116.000000,116.000000,4892.000000, 0.488419,0.011581,0.011581,0.488419, maf-5-some-pop 591 chr1 798958 798959 rs11240777 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops,genotype-conflict 591 chr1 799462 799463 rs4245756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 591 chr1 888658 888659 rs3748597 0 + T T C/T genomic single unknown 0 0 missense exact 1 32 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 592 chr1 918572 918573 rs2341354 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 592 chr1 926430 926431 rs4970403 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 592 chr1 947033 947034 rs2465126 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4135.000000,873.000000,873.000000,4135.000000, 0.412839,0.087161,0.087161,0.412839, maf-5-some-pop 592 chr1 949607 949608 rs1921 0 + G G A/G genomic single unknown 0 0 missense exact 1 29 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,DEBNICK,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,SC_JCM,SC_SNP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,UWGC,WIAF,YUSUKE, 2 A,G, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 592 chr1 990416 990417 rs2465136 0 - T T A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3085.000000,1923.000000,1923.000000,3085.000000, 0.308007,0.191993,0.191993,0.308007, maf-5-some-pop,maf-5-all-pops 592 chr1 990516 990517 rs2710872 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4597.000000,411.000000,411.000000,4597.000000, 0.458966,0.041034,0.041034,0.458966, maf-5-some-pop 592 chr1 990838 990839 rs13129 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 592 chr1 1003628 1003629 rs4075116 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3609.000000,1399.000000,1399.000000,3609.000000, 0.360323,0.139677,0.139677,0.360323, maf-5-some-pop,maf-5-all-pops,genotype-conflict 592 chr1 1017215 1017216 rs6667248 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,maf-5-all-pops 592 chr1 1018703 1018704 rs9442372 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1948.000000,3060.000000, 0.388978,0.611022, maf-5-some-pop,maf-5-all-pops,genotype-conflict 592 chr1 1039097 1039098 rs11260595 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 592 chr1 1041699 1041700 rs6604968 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 593 chr1 1048954 1048955 rs4970405 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 593 chr1 1089698 1089699 rs6686003 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 A,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop 593 chr1 1097334 1097335 rs9442385 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop,genotype-conflict 593 chr1 1129671 1129672 rs11260554 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop 593 chr1 1130726 1130727 rs10907175 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop,genotype-conflict 593 chr1 1156130 1156131 rs2887286 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2448.000000,2560.000000,2560.000000,2448.000000, 0.244409,0.255591,0.255591,0.244409, maf-5-some-pop,maf-5-all-pops 593 chr1 1158276 1158277 rs3813199 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 622.000000,4386.000000,4386.000000,622.000000, 0.062101,0.437899,0.437899,0.062101, maf-5-some-pop 593 chr1 1158630 1158631 rs6603781 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 593 chr1 1165309 1165310 rs11260562 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 510.000000,4498.000000, 0.101837,0.898163, maf-5-some-pop,genotype-conflict 594 chr1 1186501 1186502 rs6603785 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 594 chr1 1195689 1195690 rs11260568 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 594 chr1 1196470 1196471 rs6673601 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 594 chr1 1198617 1198618 rs12563338 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 594 chr1 1211291 1211292 rs6685064 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop 594 chr1 1217057 1217058 rs3753340 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 274.000000,4734.000000,4734.000000,274.000000, 0.027356,0.472644,0.472644,0.027356, maf-5-some-pop 594 chr1 1218085 1218086 rs6603788 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2657.000000,2351.000000, 0.530551,0.469449, maf-5-some-pop,maf-5-all-pops 594 chr1 1242214 1242215 rs4970431 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 594 chr1 1242467 1242468 rs2274264 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1111.000000,3897.000000,3897.000000,1111.000000, 0.110923,0.389077,0.389077,0.110923, maf-5-some-pop 594 chr1 1268846 1268847 rs307378 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 594 chr1 1297064 1297065 rs2765023 0 - C C A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2454.000000,2554.000000,2554.000000,2454.000000, 0.245008,0.254992,0.254992,0.245008, maf-5-some-pop,maf-5-all-pops 594 chr1 1297421 1297422 rs2765021 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4177.000000,831.000000,831.000000,4177.000000, 0.417033,0.082967,0.082967,0.417033, maf-5-some-pop 595 chr1 1311715 1311716 rs2649589 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3702.000000,1306.000000,1306.000000,3702.000000, 0.369609,0.130391,0.130391,0.369609, maf-5-some-pop,maf-5-all-pops 595 chr1 1333435 1333436 rs1240743 0 - C C G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4319.000000,689.000000,689.000000,4319.000000, 0.431210,0.068790,0.068790,0.431210, maf-5-some-pop,genotype-conflict 595 chr1 1365569 1365570 rs1695824 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1583.000000,3425.000000,3425.000000,1583.000000, 0.158047,0.341953,0.341953,0.158047, maf-5-some-pop 595 chr1 1411875 1411876 rs12354350 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop 595 chr1 1421530 1421531 rs819976 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 596 chr1 1462765 1462766 rs9439462 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop 596 chr1 1467484 1467485 rs1987191 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 596 chr1 1478152 1478153 rs3766180 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1536.000000,3472.000000,3472.000000,1536.000000, 0.153355,0.346645,0.346645,0.153355, maf-5-some-pop,maf-5-all-pops 596 chr1 1498151 1498152 rs2296715 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 636.000000,4372.000000,4372.000000,636.000000, 0.063498,0.436502,0.436502,0.063498, maf-5-some-pop 596 chr1 1500940 1500941 rs6603791 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 596 chr1 1506034 1506035 rs7540231 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,genotype-conflict 596 chr1 1510800 1510801 rs7519837 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops 597 chr1 1647685 1647686 rs909823 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1242.000000,3766.000000, 0.248003,0.751997, maf-5-some-pop,maf-5-all-pops 597 chr1 1647927 1647928 rs1883424 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3268.000000,1740.000000, 0.652556,0.347444, maf-5-some-pop,maf-5-all-pops 597 chr1 1648945 1648946 rs909824 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SEQUENOM,SSMP,TSC-CSHL, 2 C,T, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 597 chr1 1663830 1663831 rs3817856 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3576.000000,1432.000000, 0.714058,0.285942, maf-5-some-pop,genotype-conflict 597 chr1 1688191 1688192 rs2281173 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1870.000000,3138.000000, 0.373403,0.626597, maf-5-some-pop 597 chr1 1692320 1692321 rs1107910 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3241.000000,1767.000000,1767.000000,3241.000000, 0.323582,0.176418,0.176418,0.323582, maf-5-some-pop,maf-5-all-pops 598 chr1 1711413 1711414 rs867207 0 - A A C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4865.000000,143.000000,143.000000,4865.000000, 0.485723,0.014277,0.014277,0.485723, maf-5-some-pop 598 chr1 1721478 1721479 rs2272908 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop 598 chr1 1722931 1722932 rs3737628 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop 598 chr1 1746693 1746694 rs12742323 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop 598 chr1 1753685 1753686 rs12141314 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4193.000000,815.000000, 0.837260,0.162740, maf-5-some-pop,maf-5-all-pops,genotype-conflict 598 chr1 1759025 1759026 rs9786963 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 598 chr1 1759053 1759054 rs10907187 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop,maf-5-all-pops 598 chr1 1778089 1778090 rs12126768 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop,maf-5-all-pops 598 chr1 1783200 1783201 rs12402876 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,maf-5-all-pops 598 chr1 1793785 1793786 rs7511905 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop,genotype-conflict 598 chr1 1804301 1804302 rs3855951 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3720.000000,1288.000000,1288.000000,3720.000000, 0.371406,0.128594,0.128594,0.371406, maf-5-some-pop 598 chr1 1812687 1812688 rs6603803 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop 598 chr1 1823921 1823922 rs6688000 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1176.000000,3832.000000, 0.234824,0.765176, maf-5-some-pop 598 chr1 1829481 1829482 rs745910 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4272.000000,736.000000,736.000000,4272.000000, 0.426518,0.073482,0.073482,0.426518, maf-5-some-pop 599 chr1 1871336 1871337 rs16824543 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop 599 chr1 1888192 1888193 rs3820011 0 - C C G/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 936.000000,4072.000000,4072.000000,936.000000, 0.093450,0.406550,0.406550,0.093450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 599 chr1 1888368 1888369 rs2803285 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 665.000000,4343.000000,4343.000000,665.000000, 0.066394,0.433606,0.433606,0.066394, maf-5-some-pop,genotype-conflict 599 chr1 1903711 1903712 rs13303201 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1366.000000,3642.000000,3642.000000,1366.000000, 0.136382,0.363618,0.363618,0.136382, maf-5-some-pop,maf-5-all-pops 599 chr1 1930753 1930754 rs6605081 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3333.000000,1675.000000, 0.665535,0.334465, maf-5-some-pop,maf-5-all-pops 599 chr1 1948399 1948400 rs13303344 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2729.000000,2279.000000,2279.000000,2729.000000, 0.272464,0.227536,0.227536,0.272464, maf-5-some-pop,maf-5-all-pops 600 chr1 1972461 1972462 rs3121822 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 600 chr1 2021113 2021114 rs13303134 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1430.000000,3578.000000,3578.000000,1430.000000, 0.142772,0.357228,0.357228,0.142772, maf-5-some-pop,maf-5-all-pops 600 chr1 2024063 2024064 rs2459994 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3214.000000,1794.000000, 0.641773,0.358227, maf-5-some-pop 600 chr1 2027900 2027901 rs7513222 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1925.000000,3083.000000, 0.384385,0.615615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 600 chr1 2028736 2028737 rs12563290 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 600 chr1 2032910 2032911 rs12076576 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,SC_SNP, 2 C,G, 40.000000,4968.000000, 0.007987,0.992013, 600 chr1 2033255 2033256 rs908742 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, maf-5-some-pop,maf-5-all-pops 600 chr1 2040762 2040763 rs4648805 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3710.000000,1298.000000, 0.740815,0.259185, maf-5-some-pop,maf-5-all-pops 600 chr1 2040897 2040898 rs4648807 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2532.000000,2476.000000, 0.505591,0.494409, maf-5-some-pop 600 chr1 2047583 2047584 rs3107146 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop,genotype-conflict 600 chr1 2056734 2056735 rs3107153 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 709.000000,4299.000000, 0.141573,0.858427, maf-5-some-pop 600 chr1 2061968 2061969 rs3107157 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops,genotype-conflict 600 chr1 2069680 2069681 rs3753242 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,microattr-tpa 600 chr1 2071737 2071738 rs3128298 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4641.000000,367.000000, 0.926717,0.073283, maf-5-some-pop 600 chr1 2074103 2074104 rs12026349 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 600 chr1 2075067 2075068 rs451061 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 600 chr1 2077408 2077409 rs385039 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,SHGC,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 600 chr1 2081641 2081642 rs3107126 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 781.000000,4227.000000,4227.000000,781.000000, 0.077975,0.422025,0.422025,0.077975, maf-5-some-pop 600 chr1 2082488 2082489 rs262669 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BROAD_DGAP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SEQUENOM,SHGC,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1605.000000,3403.000000,3403.000000,1605.000000, 0.160244,0.339756,0.339756,0.160244, maf-5-some-pop,maf-5-all-pops 600 chr1 2082565 2082566 rs2257182 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BROAD_DGAP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2598.000000,2410.000000,2410.000000,2598.000000, 0.259385,0.240615,0.240615,0.259385, maf-5-some-pop,maf-5-all-pops 600 chr1 2082813 2082814 rs262666 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 601 chr1 2104980 2104981 rs262641 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops 601 chr1 2105877 2105878 rs3128309 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 601 chr1 2106437 2106438 rs2292857 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,genotype-conflict 601 chr1 2110259 2110260 rs626479 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1128.000000,3880.000000, 0.225240,0.774760, maf-5-some-pop,genotype-conflict 601 chr1 2155868 2155869 rs262683 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 4 A,C,G,T, 332.000000,4676.000000,4676.000000,332.000000, 0.033147,0.466853,0.466853,0.033147, maf-5-some-pop,genotype-conflict 601 chr1 2156361 2156362 rs2460000 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1166.000000,3842.000000,3842.000000,1166.000000, 0.116414,0.383586,0.383586,0.116414, maf-5-some-pop,maf-5-all-pops 601 chr1 2167148 2167149 rs262680 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2343.000000,2665.000000,2665.000000,2343.000000, 0.233926,0.266074,0.266074,0.233926, maf-5-some-pop,maf-5-all-pops 601 chr1 2184854 2184855 rs12385717 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 601 chr1 2186219 2186220 rs16824948 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 601 chr1 2189579 2189580 rs12084736 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop 601 chr1 2205580 2205581 rs12045693 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2297.000000,2711.000000, 0.458666,0.541334, maf-5-some-pop,maf-5-all-pops,microattr-tpa 601 chr1 2215908 2215909 rs2643913 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3260.000000,1748.000000,1748.000000,3260.000000, 0.325479,0.174521,0.174521,0.325479, maf-5-some-pop,maf-5-all-pops 601 chr1 2223257 2223258 rs2132303 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop,genotype-conflict 601 chr1 2227421 2227422 rs2843163 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1958.000000,3050.000000,3050.000000,1958.000000, 0.195487,0.304513,0.304513,0.195487, maf-5-some-pop,maf-5-all-pops 602 chr1 2229446 2229447 rs2643888 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop 602 chr1 2229477 2229478 rs12562937 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4086.000000,922.000000, 0.815895,0.184105, maf-5-some-pop 602 chr1 2234250 2234251 rs1496555 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop,maf-5-all-pops 602 chr1 2251159 2251160 rs12082516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1800.000000,3208.000000, 0.359425,0.640575, maf-5-some-pop,maf-5-all-pops 602 chr1 2257862 2257863 rs2645092 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop,maf-5-all-pops 602 chr1 2269947 2269948 rs2843143 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 710.000000,4298.000000,4298.000000,710.000000, 0.070887,0.429113,0.429113,0.070887, maf-5-some-pop,maf-5-all-pops 602 chr1 2272063 2272064 rs12730391 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 602 chr1 2280422 2280423 rs2645072 0 + A A A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 602 chr1 2281725 2281726 rs7527871 0 + A A A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 602 chr1 2283116 2283117 rs4648831 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop,genotype-conflict 602 chr1 2283160 2283161 rs2840525 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop,maf-5-all-pops 602 chr1 2283312 2283313 rs2843130 0 - C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 17 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 602 chr1 2283895 2283896 rs2840528 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2145.000000,2863.000000, 0.428315,0.571685, maf-5-some-pop,microattr-tpa,genotype-conflict 602 chr1 2285413 2285414 rs2843129 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4425.000000,583.000000,583.000000,4425.000000, 0.441793,0.058207,0.058207,0.441793, maf-5-some-pop 602 chr1 2286407 2286408 rs2840531 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop 602 chr1 2299626 2299627 rs7545940 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1835.000000,3173.000000, 0.366414,0.633586, maf-5-some-pop,maf-5-all-pops 602 chr1 2301690 2301691 rs6665546 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 976.000000,4032.000000, 0.194888,0.805112, maf-5-some-pop,maf-5-all-pops,genotype-conflict 602 chr1 2302910 2302911 rs10910060 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop 602 chr1 2303511 2303512 rs10910061 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop 602 chr1 2306151 2306152 rs12031614 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3032.000000,1976.000000, 0.605431,0.394569, maf-5-some-pop,maf-5-all-pops,genotype-conflict 602 chr1 2307677 2307678 rs16825081 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 602 chr1 2308223 2308224 rs12404555 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 602 chr1 2309081 2309082 rs2843160 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2555.000000,2453.000000,2453.000000,2555.000000, 0.255092,0.244908,0.244908,0.255092, maf-5-some-pop 602 chr1 2320701 2320702 rs4648633 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 602 chr1 2325370 2325371 rs16825102 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop 602 chr1 2327074 2327075 rs3736330 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,YUSUKE, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 602 chr1 2327814 2327815 rs2840532 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2625.000000,2383.000000,2383.000000,2625.000000, 0.262081,0.237919,0.237919,0.262081, maf-5-some-pop,genotype-conflict 602 chr1 2328713 2328714 rs2645081 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop,maf-5-all-pops 602 chr1 2329563 2329564 rs41477744 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,JMKIDD_LAB, 2 A,G, 50.000000,4958.000000, 0.009984,0.990016, maf-5-some-pop 602 chr1 2329660 2329661 rs6698680 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 3263.000000,1745.000000, 0.651558,0.348442, maf-5-some-pop,maf-5-all-pops 602 chr1 2352279 2352280 rs2494591 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1059.000000,3949.000000,3949.000000,1059.000000, 0.105731,0.394269,0.394269,0.105731, maf-5-some-pop,maf-5-all-pops 602 chr1 2357809 2357810 rs12023660 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4191.000000,817.000000, 0.836861,0.163139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 603 chr1 2363326 2363327 rs2494640 0 - G G C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 603 chr1 2369497 2369498 rs4592207 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2644.000000,2364.000000, 0.527955,0.472045, maf-5-some-pop,maf-5-all-pops 603 chr1 2392647 2392648 rs2477686 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,microattr-tpa 603 chr1 2397173 2397174 rs1998759 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1529.000000,3479.000000,3479.000000,1529.000000, 0.152656,0.347344,0.347344,0.152656, maf-5-some-pop,maf-5-all-pops 603 chr1 2418624 2418625 rs7512269 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop 603 chr1 2418934 2418935 rs10910082 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 603 chr1 2430616 2430617 rs2296442 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1836.000000,3172.000000,3172.000000,1836.000000, 0.183307,0.316693,0.316693,0.183307, maf-5-some-pop,maf-5-all-pops,genotype-conflict 603 chr1 2449710 2449711 rs3122920 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 181.000000,4827.000000,4827.000000,181.000000, 0.018071,0.481929,0.481929,0.018071, maf-5-some-pop 603 chr1 2450393 2450394 rs2246732 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2682.000000,2326.000000,2326.000000,2682.000000, 0.267772,0.232228,0.232228,0.267772, maf-5-some-pop,maf-5-all-pops,genotype-conflict 603 chr1 2452568 2452569 rs2985862 0 - T T A/G genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 31 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 771.000000,4237.000000,4237.000000,771.000000, 0.076977,0.423023,0.423023,0.076977, maf-5-some-pop 603 chr1 2454929 2454930 rs2494624 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2455632 2455633 rs10910086 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 603 chr1 2455862 2455863 rs1980789 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 4809.000000,199.000000,199.000000,4809.000000, 0.480132,0.019868,0.019868,0.480132, maf-5-some-pop 603 chr1 2456202 2456203 rs3122922 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 631.000000,4377.000000,4377.000000,631.000000, 0.062999,0.437001,0.437001,0.062999, maf-5-some-pop 603 chr1 2473257 2473258 rs2495368 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4683.000000,325.000000,325.000000,4683.000000, 0.467552,0.032448,0.032448,0.467552, maf-5-some-pop 603 chr1 2482920 2482921 rs2147905 0 - T T A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1702.000000,3306.000000,3306.000000,1702.000000, 0.169928,0.330072,0.330072,0.169928, maf-5-some-pop,maf-5-all-pops 604 chr1 2501337 2501338 rs10797432 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2101.000000,2907.000000, 0.419529,0.580471, maf-5-some-pop,maf-5-all-pops,microattr-tpa 604 chr1 2505712 2505713 rs10910093 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 604 chr1 2513054 2513055 rs4486391 0 + A A A/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1734.000000,3274.000000, 0.346246,0.653754, maf-5-some-pop 604 chr1 2521429 2521430 rs10910097 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4217.000000,791.000000, 0.842053,0.157947, maf-5-some-pop,maf-5-all-pops,genotype-conflict 604 chr1 2533551 2533552 rs10910099 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2524.000000,2484.000000, 0.503994,0.496006, maf-5-some-pop,maf-5-all-pops,genotype-conflict 604 chr1 2546228 2546229 rs6684865 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2394.000000,2614.000000, 0.478035,0.521965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 604 chr1 2553623 2553624 rs3890745 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2581.000000,2427.000000,2427.000000,2581.000000, 0.257688,0.242312,0.242312,0.257688, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa,genotype-conflict 604 chr1 2553757 2553758 rs4474198 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2323.000000,2685.000000, 0.463858,0.536142, maf-5-some-pop,maf-5-all-pops,genotype-conflict 605 chr1 2701815 2701816 rs1456462 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 605 chr1 2713326 2713327 rs2377041 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1492.000000,3516.000000,3516.000000,1492.000000, 0.148962,0.351038,0.351038,0.148962, maf-5-some-pop,maf-5-all-pops 605 chr1 2723344 2723345 rs4648360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3638.000000,1370.000000, 0.726438,0.273562, maf-5-some-pop,genotype-conflict 605 chr1 2723551 2723552 rs10909872 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,genotype-conflict 605 chr1 2725951 2725952 rs7538063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop,maf-5-all-pops 605 chr1 2735819 2735820 rs12565258 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 605 chr1 2749920 2749921 rs4648482 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1426.000000,3582.000000, 0.284744,0.715256, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2754405 2754406 rs729045 0 - A A C/T genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2576.000000,2432.000000,2432.000000,2576.000000, 0.257188,0.242812,0.242812,0.257188, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2754511 2754512 rs6680471 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop 606 chr1 2761374 2761375 rs12049543 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 606 chr1 2766970 2766971 rs4648515 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 606 chr1 2782592 2782593 rs12119163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops 606 chr1 2783039 2783040 rs4648402 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4962.000000,46.000000, 0.990815,0.009185, maf-5-some-pop 606 chr1 2786144 2786145 rs1563469 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop,maf-5-all-pops 606 chr1 2787706 2787707 rs897620 0 + C C A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 3 A,C,G, 2.000000,134.000000,4872.000000, 0.000399,0.026758,0.972843, maf-5-some-pop 606 chr1 2789107 2789108 rs10910019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop,maf-5-all-pops 606 chr1 2789905 2789906 rs2124661 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 606 chr1 2792800 2792801 rs16823103 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,genotype-conflict 606 chr1 2793231 2793232 rs12063033 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 606 chr1 2817420 2817421 rs2842910 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1663.000000,3345.000000, 0.332069,0.667931, maf-5-some-pop,maf-5-all-pops 606 chr1 2825366 2825367 rs897631 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1876.000000,3132.000000, 0.374601,0.625399, maf-5-some-pop,genotype-conflict 606 chr1 2826162 2826163 rs897632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop,maf-5-all-pops 606 chr1 2831368 2831369 rs2606408 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 606 chr1 2833159 2833160 rs1869971 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3393.000000,1615.000000, 0.677516,0.322484, maf-5-some-pop,maf-5-all-pops 606 chr1 2833331 2833332 rs7340016 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3645.000000,1363.000000, 0.727835,0.272165, maf-5-some-pop,maf-5-all-pops 606 chr1 2833742 2833743 rs1563468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2250.000000,2758.000000, 0.449281,0.550719, maf-5-some-pop 606 chr1 2841341 2841342 rs12058842 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 606 chr1 2841879 2841880 rs9782915 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2548.000000,2460.000000, 0.508786,0.491214, maf-5-some-pop,maf-5-all-pops 606 chr1 2844253 2844254 rs10752728 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2536.000000,2472.000000, 0.506390,0.493610, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2846273 2846274 rs897635 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2871.000000,2137.000000, 0.573283,0.426717, maf-5-some-pop,maf-5-all-pops 606 chr1 2851237 2851238 rs1869972 0 + G G A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2197.000000,2811.000000, 0.438698,0.561302, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2858408 2858409 rs16823232 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 606 chr1 2859723 2859724 rs2842909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,genotype-conflict 606 chr1 2865777 2865778 rs7548727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop 606 chr1 2865900 2865901 rs7541664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 606 chr1 2867147 2867148 rs2606414 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2867960 2867961 rs2842933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1999.000000,3009.000000, 0.399161,0.600839, maf-5-some-pop,maf-5-all-pops 606 chr1 2878365 2878366 rs11583804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2069.000000,2939.000000, 0.413139,0.586861, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia 606 chr1 2879459 2879460 rs6659552 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop 607 chr1 2889147 2889148 rs4648444 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 2902127 2902128 rs1572657 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4148.000000,860.000000,860.000000,4148.000000, 0.414137,0.085863,0.085863,0.414137, maf-5-some-pop,microattr-tpa,genotype-conflict 607 chr1 2902226 2902227 rs16823022 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 G,T, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop 607 chr1 2904055 2904056 rs10797373 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2474.000000,2534.000000, 0.494010,0.505990, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 2905176 2905177 rs12089663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 607 chr1 2908387 2908388 rs10909855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3988.000000,1020.000000, 0.796326,0.203674, maf-5-some-pop 607 chr1 2908998 2908999 rs11811220 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4598.000000,410.000000, 0.918131,0.081869, maf-5-some-pop 607 chr1 2909370 2909371 rs17391750 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 607 chr1 2919941 2919942 rs12022429 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 743.000000,4265.000000, 0.148363,0.851637, maf-5-some-pop 607 chr1 2921859 2921860 rs16823335 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 607 chr1 2921908 2921909 rs6683516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 607 chr1 2922019 2922020 rs6680636 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4184.000000,824.000000, 0.835463,0.164537, maf-5-some-pop 607 chr1 2925521 2925522 rs946177 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 2926554 2926555 rs2027264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop,genotype-conflict 607 chr1 2931326 2931327 rs6691208 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops 607 chr1 2932445 2932446 rs16823350 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,genotype-conflict 607 chr1 2934311 2934312 rs16823352 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop,genotype-conflict 607 chr1 2936479 2936480 rs10752732 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop 607 chr1 2936869 2936870 rs10492936 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop 607 chr1 2937311 2937312 rs16823374 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 481.000000,4527.000000, 0.096046,0.903954, maf-5-some-pop,genotype-conflict 607 chr1 2938696 2938697 rs3795262 0 + T T A/C/G/T genomic single unknown 0 0 coding-synon exact 1 SingleClassQuadAllelic,InconsistentAlleles 21 1000GENOMES,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 3 A,G,T, 9.000000,1047.000000,3952.000000, 0.001797,0.209065,0.789138, maf-5-some-pop,maf-5-all-pops 607 chr1 2946725 2946726 rs12038530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2947908 2947909 rs12039548 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2948019 2948020 rs12034573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,maf-5-all-pops 607 chr1 2950066 2950067 rs34408665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,maf-5-all-pops 607 chr1 2950333 2950334 rs6661908 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 607 chr1 2950369 2950370 rs41334845 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 4 A,C,G,T, 246.000000,4762.000000,4762.000000,246.000000, 0.024561,0.475439,0.475439,0.024561, maf-5-some-pop 607 chr1 2951833 2951834 rs10489588 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 1047.000000,3961.000000,3961.000000,1047.000000, 0.104533,0.395467,0.395467,0.104533, maf-5-some-pop,maf-5-all-pops 607 chr1 2952839 2952840 rs9661525 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 992.000000,4016.000000, 0.198083,0.801917, maf-5-some-pop,maf-5-all-pops 607 chr1 2956665 2956666 rs2993510 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 607 chr1 2957599 2957600 rs12409277 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,maf-5-all-pops 607 chr1 2959609 2959610 rs6692292 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops 607 chr1 2970929 2970930 rs12060482 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 607 chr1 2973321 2973322 rs2993480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops 607 chr1 2974211 2974212 rs12057171 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 607 chr1 2981840 2981841 rs6665853 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1056.000000,3952.000000, 0.210863,0.789137, maf-5-some-pop 607 chr1 2982620 2982621 rs12070295 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop 607 chr1 2994716 2994717 rs4648451 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,genotype-conflict 607 chr1 2996195 2996196 rs7525173 0 + C C C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1871.000000,3137.000000, 0.373602,0.626398, maf-5-some-pop,maf-5-all-pops 607 chr1 2996601 2996602 rs1569419 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1187.000000,3821.000000,3821.000000,1187.000000, 0.118510,0.381490,0.381490,0.118510, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 3000923 3000924 rs6695131 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2864.000000,2144.000000, 0.571885,0.428115, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 3002071 3002072 rs2981884 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4815.000000,193.000000,193.000000,4815.000000, 0.480731,0.019269,0.019269,0.480731, maf-5-some-pop 607 chr1 3002313 3002314 rs2742680 0 - C C C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,TISHKOFF, 4 A,C,G,T, 66.000000,4942.000000,4942.000000,66.000000, 0.006589,0.493411,0.493411,0.006589, maf-5-some-pop 607 chr1 3004356 3004357 rs2981881 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3851.000000,1157.000000,1157.000000,3851.000000, 0.384485,0.115515,0.115515,0.384485, maf-5-some-pop 607 chr1 3009968 3009969 rs7543737 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2268.000000,2740.000000, 0.452875,0.547125, maf-5-some-pop,maf-5-all-pops 607 chr1 3010585 3010586 rs2981875 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM, 4 A,C,G,T, 101.000000,4907.000000,4907.000000,101.000000, 0.010084,0.489916,0.489916,0.010084, maf-5-some-pop 608 chr1 3025711 3025712 rs4648453 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 G,T, 4441.000000,567.000000, 0.886781,0.113219, maf-5-some-pop,genotype-conflict 608 chr1 3026099 3026100 rs12135664 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop 608 chr1 3026259 3026260 rs2981868 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3038529 3038530 rs6704012 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 608 chr1 3044180 3044181 rs2817174 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3207.000000,1801.000000, 0.640375,0.359625, maf-5-some-pop,genotype-conflict 608 chr1 3044976 3044977 rs6698974 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 608 chr1 3047251 3047252 rs2817178 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop 608 chr1 3049712 3049713 rs10909882 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 711.000000,4297.000000, 0.141973,0.858027, maf-5-some-pop,genotype-conflict 608 chr1 3050593 3050594 rs12120879 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4142.000000,866.000000, 0.827077,0.172923, maf-5-some-pop,maf-5-all-pops 608 chr1 3054105 3054106 rs2235176 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2397.000000,2611.000000,2611.000000,2397.000000, 0.239317,0.260683,0.260683,0.239317, maf-5-some-pop,maf-5-all-pops 608 chr1 3058369 3058370 rs2817184 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1502.000000,3506.000000, 0.299920,0.700080, maf-5-some-pop 608 chr1 3068645 3068646 rs35005996 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop 608 chr1 3080018 3080019 rs2742673 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3353.000000,1655.000000,1655.000000,3353.000000, 0.334764,0.165236,0.165236,0.334764, maf-5-some-pop,maf-5-all-pops 608 chr1 3080854 3080855 rs1798246 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2497.000000,2511.000000,2511.000000,2497.000000, 0.249301,0.250699,0.250699,0.249301, maf-5-some-pop,maf-5-all-pops,genotype-conflict 608 chr1 3080939 3080940 rs1736522 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3089848 3089849 rs17390062 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,genotype-conflict 608 chr1 3094830 3094831 rs17390167 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 608 chr1 3095125 3095126 rs2376495 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 608 chr1 3101352 3101353 rs2651929 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2726.000000,2282.000000,2282.000000,2726.000000, 0.272165,0.227835,0.227835,0.272165, maf-5-some-pop,maf-5-all-pops 608 chr1 3101761 3101762 rs2651927 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3324.000000,1684.000000,1684.000000,3324.000000, 0.331869,0.168131,0.168131,0.331869, maf-5-some-pop,maf-5-all-pops,genotype-conflict 608 chr1 3101862 3101863 rs2651925 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 608 chr1 3103311 3103312 rs12135062 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop,maf-5-all-pops 608 chr1 3108516 3108517 rs6685614 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2783.000000,2225.000000, 0.555711,0.444289, maf-5-some-pop,maf-5-all-pops,genotype-conflict 608 chr1 3110734 3110735 rs2651912 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1367.000000,3641.000000,3641.000000,1367.000000, 0.136482,0.363518,0.363518,0.136482, maf-5-some-pop 608 chr1 3112416 3112417 rs10797383 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2321.000000,2687.000000, 0.463458,0.536542, maf-5-some-pop,maf-5-all-pops 608 chr1 3112978 3112979 rs9659245 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 608 chr1 3114951 3114952 rs16823459 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,genotype-conflict 608 chr1 3119488 3119489 rs11577655 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 608 chr1 3119728 3119729 rs4308918 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 814.000000,4194.000000, 0.162540,0.837460, maf-5-some-pop 608 chr1 3123740 3123741 rs7517083 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 608 chr1 3124154 3124155 rs13328662 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop 608 chr1 3127136 3127137 rs10492941 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 663.000000,4345.000000,4345.000000,663.000000, 0.066194,0.433806,0.433806,0.066194, maf-5-some-pop 608 chr1 3127537 3127538 rs3753758 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1004.000000,4004.000000,4004.000000,1004.000000, 0.100240,0.399760,0.399760,0.100240, maf-5-some-pop 608 chr1 3127924 3127925 rs6424068 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop,maf-5-all-pops 608 chr1 3135174 3135175 rs2651906 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 367.000000,4641.000000,4641.000000,367.000000, 0.036641,0.463359,0.463359,0.036641, maf-5-some-pop 608 chr1 3136857 3136858 rs2651898 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4600.000000,408.000000,408.000000,4600.000000, 0.459265,0.040735,0.040735,0.459265, maf-5-some-pop 608 chr1 3137912 3137913 rs16823529 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop,genotype-conflict 608 chr1 3137955 3137956 rs12075867 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop,genotype-conflict 608 chr1 3138135 3138136 rs2817148 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop 608 chr1 3139915 3139916 rs2651891 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 828.000000,4180.000000,4180.000000,828.000000, 0.082668,0.417332,0.417332,0.082668, maf-5-some-pop 608 chr1 3141615 3141616 rs16823551 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 609 chr1 3146496 3146497 rs10157420 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 609 chr1 3147029 3147030 rs6424069 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop 609 chr1 3147824 3147825 rs10797384 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3057.000000,1951.000000, 0.610423,0.389577, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3148696 3148697 rs16823576 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 609 chr1 3152967 3152968 rs2455109 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3165266 3165267 rs4648462 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,C, 4422.000000,586.000000, 0.882987,0.117013, maf-5-some-pop,genotype-conflict 609 chr1 3172701 3172702 rs17398063 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3175637 3175638 rs12045829 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 609 chr1 3177479 3177480 rs3002685 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3858.000000,1150.000000, 0.770367,0.229633, maf-5-some-pop,genotype-conflict 609 chr1 3188504 3188505 rs2455124 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop 609 chr1 3197479 3197480 rs16823783 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4524.000000,484.000000, 0.903355,0.096645, maf-5-some-pop,genotype-conflict 609 chr1 3197746 3197747 rs10492940 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 300.000000,4708.000000,4708.000000,300.000000, 0.029952,0.470048,0.470048,0.029952, maf-5-some-pop 609 chr1 3199483 3199484 rs905135 0 - A A A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3572.000000,1436.000000,1436.000000,3572.000000, 0.356629,0.143371,0.143371,0.356629, maf-5-some-pop 609 chr1 3200336 3200337 rs13374875 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 609 chr1 3202444 3202445 rs2500300 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 454.000000,4554.000000,4554.000000,454.000000, 0.045327,0.454673,0.454673,0.045327, maf-5-some-pop 609 chr1 3208374 3208375 rs10909918 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2862.000000,2146.000000, 0.571486,0.428514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3212427 3212428 rs12037974 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop,maf-5-all-pops 609 chr1 3212945 3212946 rs2500289 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2892.000000,2116.000000,2116.000000,2892.000000, 0.288738,0.211262,0.211262,0.288738, maf-5-some-pop,maf-5-all-pops 609 chr1 3214731 3214732 rs2455144 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2405.000000,2603.000000,2603.000000,2405.000000, 0.240116,0.259884,0.259884,0.240116, maf-5-some-pop,maf-5-all-pops 609 chr1 3218328 3218329 rs2455136 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3218922 3218923 rs2500283 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3220100 3220101 rs6673393 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop 609 chr1 3220159 3220160 rs6670518 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3221370 3221371 rs7517281 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop,maf-5-all-pops 609 chr1 3221620 3221621 rs4648378 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2880.000000,2128.000000, 0.575080,0.424920, maf-5-some-pop,maf-5-all-pops 609 chr1 3222112 3222113 rs7534363 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop 609 chr1 3222333 3222334 rs7534029 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3222469 3222470 rs11808276 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop,maf-5-all-pops 609 chr1 3222626 3222627 rs10909924 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop,maf-5-all-pops 609 chr1 3225334 3225335 rs7526595 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 609 chr1 3225756 3225757 rs12086132 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop,maf-5-all-pops 609 chr1 3225939 3225940 rs2500278 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2227.000000,2781.000000,2781.000000,2227.000000, 0.222344,0.277656,0.277656,0.222344, maf-5-some-pop,maf-5-all-pops 609 chr1 3226615 3226616 rs10909927 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3226832 3226833 rs12567158 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop,maf-5-all-pops 609 chr1 3229257 3229258 rs12409315 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop,maf-5-all-pops 609 chr1 3235555 3235556 rs12043519 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,genotype-conflict 609 chr1 3236040 3236041 rs2483266 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3237173 3237174 rs6687835 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3028.000000,1980.000000, 0.604633,0.395367, maf-5-some-pop,maf-5-all-pops 609 chr1 3237208 3237209 rs2500274 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 4714.000000,294.000000,294.000000,4714.000000, 0.470647,0.029353,0.029353,0.470647, maf-5-some-pop 609 chr1 3237551 3237552 rs6690558 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,genotype-conflict 609 chr1 3241134 3241135 rs1108600 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 869.000000,4139.000000,4139.000000,869.000000, 0.086761,0.413239,0.413239,0.086761, maf-5-some-pop,genotype-conflict 609 chr1 3252006 3252007 rs4648478 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 609 chr1 3252103 3252104 rs2483278 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1164.000000,3844.000000, 0.232428,0.767572, maf-5-some-pop,maf-5-all-pops 609 chr1 3253940 3253941 rs7552331 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1856.000000,3152.000000, 0.370607,0.629393, maf-5-some-pop,maf-5-all-pops 609 chr1 3254099 3254100 rs16824328 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop 609 chr1 3255538 3255539 rs2483280 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3256107 3256108 rs1999527 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2268.000000,2740.000000,2740.000000,2268.000000, 0.226438,0.273562,0.273562,0.226438, maf-5-some-pop,maf-5-all-pops 609 chr1 3256201 3256202 rs16824338 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 609 chr1 3257058 3257059 rs2255212 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1411.000000,3597.000000,3597.000000,1411.000000, 0.140875,0.359125,0.359125,0.140875, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3259676 3259677 rs2483287 0 + C C C/T genomic single unknown 0 0 intron exact 1 MixedObserved 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3365.000000,1643.000000, 0.671925,0.328075, maf-5-some-pop,maf-5-all-pops 609 chr1 3261681 3261682 rs4415513 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2331.000000,2677.000000, 0.465455,0.534545, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3278958 3278959 rs17399569 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop,genotype-conflict 610 chr1 3279323 3279324 rs7524171 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop,maf-5-all-pops 610 chr1 3283527 3283528 rs4648485 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2516.000000,2492.000000, 0.502396,0.497604, maf-5-some-pop,maf-5-all-pops 610 chr1 3285149 3285150 rs4648486 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2624.000000,2384.000000, 0.523962,0.476038, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3285627 3285628 rs6424073 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2465.000000,2543.000000, 0.492212,0.507788, maf-5-some-pop,maf-5-all-pops 610 chr1 3286252 3286253 rs16823663 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop 610 chr1 3288536 3288537 rs16823665 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 610 chr1 3294421 3294422 rs2493310 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3782.000000,1226.000000,1226.000000,3782.000000, 0.377596,0.122404,0.122404,0.377596, maf-5-some-pop 610 chr1 3294971 3294972 rs1538693 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3296.000000,1712.000000,1712.000000,3296.000000, 0.329073,0.170927,0.170927,0.329073, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3297385 3297386 rs11584967 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 610 chr1 3297637 3297638 rs12085231 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,C, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop,maf-5-all-pops 610 chr1 3301129 3301130 rs868689 0 + T T G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3302870 3302871 rs10492939 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1694.000000,3314.000000,3314.000000,1694.000000, 0.169129,0.330871,0.330871,0.169129, maf-5-some-pop 610 chr1 3308033 3308034 rs2493275 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 321.000000,4687.000000,4687.000000,321.000000, 0.032049,0.467951,0.467951,0.032049, maf-5-some-pop,maf-5-all-pops 610 chr1 3314595 3314596 rs17822581 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4531.000000,477.000000, 0.904752,0.095248, maf-5-some-pop,genotype-conflict 610 chr1 3316755 3316756 rs10909940 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop,genotype-conflict 610 chr1 3318713 3318714 rs5024246 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 610 chr1 3325036 3325037 rs2483225 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 610 chr1 3326093 3326094 rs36070715 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 610 chr1 3326795 3326796 rs6670123 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop,genotype-conflict 610 chr1 3333594 3333595 rs2493285 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 811.000000,4197.000000,4197.000000,811.000000, 0.080970,0.419030,0.419030,0.080970, maf-5-some-pop,maf-5-all-pops 610 chr1 3337551 3337552 rs2493283 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4665.000000,343.000000,343.000000,4665.000000, 0.465755,0.034245,0.034245,0.465755, maf-5-some-pop 610 chr1 3339338 3339339 rs10492937 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 501.000000,4507.000000,4507.000000,501.000000, 0.050020,0.449980,0.449980,0.050020, maf-5-some-pop 610 chr1 3340234 3340235 rs17400178 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 610 chr1 3340854 3340855 rs4648500 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2673.000000,2335.000000, 0.533746,0.466254, maf-5-some-pop 610 chr1 3344214 3344215 rs2483239 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3756.000000,1252.000000, 0.750000,0.250000, maf-5-some-pop 610 chr1 3345144 3345145 rs2483242 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops 610 chr1 3346347 3346348 rs2493277 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3353948 3353949 rs2493264 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 487.000000,4521.000000,4521.000000,487.000000, 0.048622,0.451378,0.451378,0.048622, maf-5-some-pop 610 chr1 3366492 3366493 rs2096102 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1567.000000,3441.000000, 0.312899,0.687101, maf-5-some-pop,maf-5-all-pops 610 chr1 3368130 3368131 rs4648501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3161.000000,1847.000000, 0.631190,0.368810, maf-5-some-pop,maf-5-all-pops 610 chr1 3368142 3368143 rs2487670 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 1319.000000,3689.000000,3689.000000,1319.000000, 0.131689,0.368311,0.368311,0.131689, maf-5-some-pop,maf-5-all-pops 610 chr1 3377342 3377343 rs2487681 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3433.000000,1575.000000,1575.000000,3433.000000, 0.342752,0.157248,0.157248,0.342752, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3377441 3377442 rs2487680 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 4524.000000,484.000000,484.000000,4524.000000, 0.451677,0.048323,0.048323,0.451677, maf-5-some-pop,genotype-conflict 610 chr1 3380056 3380057 rs3806164 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,CORNELL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 437.000000,4571.000000,4571.000000,437.000000, 0.043630,0.456370,0.456370,0.043630, maf-5-some-pop 610 chr1 3394249 3394250 rs10909948 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1583.000000,3425.000000, 0.316094,0.683906, maf-5-some-pop,maf-5-all-pops 610 chr1 3404226 3404227 rs2821041 0 - C C A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 MixedObserved,InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1566.000000,3442.000000,3442.000000,1566.000000, 0.156350,0.343650,0.343650,0.156350, maf-5-some-pop,maf-5-all-pops 610 chr1 3405295 3405296 rs4648505 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop,maf-5-all-pops 610 chr1 3406790 3406791 rs2821040 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3377.000000,1631.000000,1631.000000,3377.000000, 0.337161,0.162839,0.162839,0.337161, maf-5-some-pop 611 chr1 3420134 3420135 rs41495053 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,JMKIDD_LAB, 4 A,C,G,T, 75.000000,4933.000000,4933.000000,75.000000, 0.007488,0.492512,0.492512,0.007488, 611 chr1 3421585 3421586 rs6669870 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 611 chr1 3441381 3441382 rs1896 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 2 C,T, 3829.000000,1179.000000, 0.764577,0.235423, maf-5-some-pop,maf-5-all-pops,genotype-conflict 611 chr1 3446812 3446813 rs4648392 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 611 chr1 3474776 3474777 rs13375075 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,genotype-conflict 611 chr1 3475200 3475201 rs13374641 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 611 chr1 3476278 3476279 rs2794345 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 611 chr1 3480148 3480149 rs10909969 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,genotype-conflict 611 chr1 3494078 3494079 rs12080677 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop 611 chr1 3497924 3497925 rs2821048 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 859.000000,4149.000000,4149.000000,859.000000, 0.085763,0.414237,0.414237,0.085763, maf-5-some-pop,maf-5-all-pops 611 chr1 3499066 3499067 rs10909974 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 611 chr1 3504072 3504073 rs12139206 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops,genotype-conflict 611 chr1 3512340 3512341 rs2794327 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 611 chr1 3512515 3512516 rs2821025 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 447.000000,4561.000000,4561.000000,447.000000, 0.044629,0.455371,0.455371,0.044629, maf-5-some-pop,genotype-conflict 611 chr1 3538500 3538501 rs4364818 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop,maf-5-all-pops 612 chr1 3539081 3539082 rs10909989 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop 612 chr1 3539480 3539481 rs10909990 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop 612 chr1 3544345 3544346 rs4276857 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3545492 3545493 rs4512587 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 612 chr1 3545611 3545612 rs1128474 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3981.000000,1027.000000, 0.794928,0.205072, maf-5-some-pop 612 chr1 3548831 3548832 rs2760320 0 - G G C/G genomic single unknown 0 0 intron,missense exact 1 15 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3554588 3554589 rs10909998 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,genotype-conflict 612 chr1 3554623 3554624 rs2760319 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 694.000000,4314.000000,4314.000000,694.000000, 0.069289,0.430711,0.430711,0.069289, maf-5-some-pop,genotype-conflict 612 chr1 3558261 3558262 rs7519550 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 612 chr1 3575832 3575833 rs2208993 0 - C C A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 8.000000,5000.000000,5000.000000,8.000000, 0.000799,0.499201,0.499201,0.000799, maf-5-some-pop,maf-5-all-pops 612 chr1 3575928 3575929 rs10910003 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop 612 chr1 3576196 3576197 rs10910004 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3577320 3577321 rs4648545 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 612 chr1 3581960 3581961 rs874532 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3586249 3586250 rs732901 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4581.000000,427.000000, 0.914736,0.085264, maf-5-some-pop 612 chr1 3586449 3586450 rs732903 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 612 chr1 3587504 3587505 rs3765696 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 481.000000,4527.000000, 0.096046,0.903954, maf-5-some-pop,genotype-conflict 612 chr1 3591447 3591448 rs12027041 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1770.000000,3238.000000, 0.353435,0.646565, maf-5-some-pop,maf-5-all-pops 612 chr1 3607519 3607520 rs3765730 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop 612 chr1 3608593 3608594 rs751035 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 612 chr1 3620179 3620180 rs17379833 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3520.000000,1488.000000, 0.702875,0.297125, maf-5-some-pop,genotype-conflict 612 chr1 3622305 3622306 rs3765753 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2785.000000,2223.000000, 0.556110,0.443890, maf-5-some-pop,maf-5-all-pops 612 chr1 3628676 3628677 rs6424090 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1607.000000,3401.000000, 0.320887,0.679113, maf-5-some-pop 612 chr1 3648267 3648268 rs6664760 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop 612 chr1 3648344 3648345 rs6695978 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop,genotype-conflict 612 chr1 3652616 3652617 rs1047928 0 - G G C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 12 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,LEE,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3654594 3654595 rs7514979 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 612 chr1 3655535 3655536 rs3903158 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,genotype-conflict 612 chr1 3665866 3665867 rs12120656 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops,genotype-conflict 612 chr1 3668752 3668753 rs12128253 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop 613 chr1 3671026 3671027 rs1181889 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 4510.000000,498.000000,498.000000,4510.000000, 0.450280,0.049720,0.049720,0.450280, maf-5-some-pop,genotype-conflict 613 chr1 3676597 3676598 rs1181884 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4534.000000,474.000000,474.000000,4534.000000, 0.452676,0.047324,0.047324,0.452676, maf-5-some-pop 613 chr1 3680728 3680729 rs1181877 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2076.000000,2932.000000,2932.000000,2076.000000, 0.207268,0.292732,0.292732,0.207268, maf-5-some-pop,maf-5-all-pops 613 chr1 3681830 3681831 rs1181875 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3597.000000,1411.000000,1411.000000,3597.000000, 0.359125,0.140875,0.140875,0.359125, maf-5-some-pop,maf-5-all-pops 613 chr1 3682069 3682070 rs1181874 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3483.000000,1525.000000,1525.000000,3483.000000, 0.347744,0.152256,0.152256,0.347744, maf-5-some-pop 613 chr1 3684184 3684185 rs10910025 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop,genotype-conflict 613 chr1 3686317 3686318 rs2275837 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE, 4 A,C,G,T, 174.000000,4834.000000,4834.000000,174.000000, 0.017372,0.482628,0.482628,0.017372, maf-5-some-pop 613 chr1 3694646 3694647 rs1891937 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 369.000000,4639.000000,4639.000000,369.000000, 0.036841,0.463159,0.463159,0.036841, maf-5-some-pop,genotype-conflict 613 chr1 3695110 3695111 rs2887275 0 - G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 613 chr1 3695999 3696000 rs2799182 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2634.000000,2374.000000,2374.000000,2634.000000, 0.262979,0.237021,0.237021,0.262979, maf-5-some-pop,maf-5-all-pops 613 chr1 3696355 3696356 rs12061931 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4671.000000,337.000000, 0.932708,0.067292, maf-5-some-pop,maf-5-all-pops 613 chr1 3696491 3696492 rs17411279 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,genotype-conflict 613 chr1 3696535 3696536 rs3737593 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop 613 chr1 3696638 3696639 rs16824088 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 613 chr1 3698946 3698947 rs12122058 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 613 chr1 3700215 3700216 rs12563491 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,genotype-conflict 613 chr1 3705225 3705226 rs9424283 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,genotype-conflict 613 chr1 3705984 3705985 rs6692872 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 613 chr1 3714032 3714033 rs7543006 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3796.000000,1212.000000, 0.757987,0.242013, maf-5-some-pop 613 chr1 3717403 3717404 rs12403561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop 613 chr1 3719056 3719057 rs7535775 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3335.000000,1673.000000, 0.665935,0.334065, maf-5-some-pop,maf-5-all-pops 613 chr1 3720964 3720965 rs2154068 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1548.000000,3460.000000,3460.000000,1548.000000, 0.154553,0.345447,0.345447,0.154553, maf-5-some-pop,maf-5-all-pops 613 chr1 3726325 3726326 rs10752721 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2068.000000,2940.000000, 0.412939,0.587061, maf-5-some-pop,maf-5-all-pops 613 chr1 3730434 3730435 rs6695834 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3267.000000,1741.000000, 0.652356,0.347644, maf-5-some-pop,maf-5-all-pops 613 chr1 3732638 3732639 rs6702916 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3288.000000,1720.000000, 0.656550,0.343450, maf-5-some-pop 613 chr1 3732706 3732707 rs6702935 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3287.000000,1721.000000, 0.656350,0.343650, maf-5-some-pop 613 chr1 3732781 3732782 rs6703035 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop 613 chr1 3733160 3733161 rs11809965 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 613 chr1 3736318 3736319 rs9424303 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1551.000000,3457.000000, 0.309704,0.690296, maf-5-some-pop,maf-5-all-pops 613 chr1 3742256 3742257 rs12759497 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop 613 chr1 3743318 3743319 rs6663840 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops 613 chr1 3743390 3743391 rs6688969 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops,genotype-conflict 613 chr1 3743702 3743703 rs16824152 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 613 chr1 3744083 3744084 rs9424310 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2851.000000,2157.000000, 0.569289,0.430711, maf-5-some-pop,maf-5-all-pops 613 chr1 3744260 3744261 rs7545274 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops,genotype-conflict 613 chr1 3745923 3745924 rs2275831 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1054.000000,3954.000000,3954.000000,1054.000000, 0.105232,0.394768,0.394768,0.105232, maf-5-some-pop,maf-5-all-pops 613 chr1 3746709 3746710 rs17403773 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 613 chr1 3747602 3747603 rs6413779 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 613 chr1 3751928 3751929 rs12093010 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,genotype-conflict 613 chr1 3753812 3753813 rs12084604 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,TISHKOFF, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 613 chr1 3755917 3755918 rs41450948 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 4 1000GENOMES,AFFY,AFFY_GWHS,TISHKOFF, 4 A,C,G,T, 4942.000000,66.000000,66.000000,4942.000000, 0.493411,0.006589,0.006589,0.493411, maf-5-some-pop,maf-5-all-pops 613 chr1 3756073 3756074 rs2298225 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 173.000000,4835.000000,4835.000000,173.000000, 0.017272,0.482728,0.482728,0.017272, maf-5-some-pop 613 chr1 3756154 3756155 rs2298224 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE, 4 A,C,G,T, 4832.000000,176.000000,176.000000,4832.000000, 0.482428,0.017572,0.017572,0.482428, maf-5-some-pop,genotype-conflict 613 chr1 3762888 3762889 rs4411083 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop 613 chr1 3763163 3763164 rs12060299 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 613 chr1 3763566 3763567 rs10909802 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 613 chr1 3766239 3766240 rs16824230 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop,genotype-conflict 613 chr1 3766285 3766286 rs17404435 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 2815.000000,2193.000000, 0.562101,0.437899, maf-5-some-pop,maf-5-all-pops 613 chr1 3766440 3766441 rs6683156 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,genotype-conflict 613 chr1 3769230 3769231 rs6657021 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 613 chr1 3769261 3769262 rs4507956 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops 613 chr1 3770928 3770929 rs10909804 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop,genotype-conflict 613 chr1 3771347 3771348 rs4648424 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3224.000000,1784.000000, 0.643770,0.356230, maf-5-some-pop 613 chr1 3772358 3772359 rs4564078 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 613 chr1 3786523 3786524 rs10909812 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4974.000000,34.000000, 0.993211,0.006789, 613 chr1 3792800 3792801 rs12734459 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4218.000000,790.000000, 0.842252,0.157748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 613 chr1 3794272 3794273 rs12132240 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4159.000000,849.000000, 0.830471,0.169529, maf-5-some-pop 614 chr1 3801827 3801828 rs10909818 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 469.000000,4539.000000, 0.093650,0.906350, maf-5-some-pop 614 chr1 3805097 3805098 rs7530189 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop 614 chr1 3805254 3805255 rs7544191 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop 614 chr1 3811789 3811790 rs12085743 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 614 chr1 3812847 3812848 rs10797353 0 + C C A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 3 A,C,G, 57.000000,1621.000000,3330.000000, 0.011382,0.323682,0.664936, maf-5-some-pop,maf-5-all-pops,genotype-conflict 614 chr1 3822702 3822703 rs10909830 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3533.000000,1475.000000, 0.705471,0.294529, maf-5-some-pop,maf-5-all-pops 615 chr1 3999591 3999592 rs12032899 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 615 chr1 3999636 3999637 rs4654522 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4002831 4002832 rs12724233 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1120.000000,3888.000000, 0.223642,0.776358, maf-5-some-pop 615 chr1 4003893 4003894 rs12079672 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 615 chr1 4004249 4004250 rs11583257 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3471.000000,1537.000000, 0.693091,0.306909, maf-5-some-pop,maf-5-all-pops 615 chr1 4006059 4006060 rs7548668 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2109.000000,2899.000000, 0.421126,0.578874, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4007109 4007110 rs7519458 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2605.000000,2403.000000, 0.520168,0.479832, maf-5-some-pop,maf-5-all-pops 615 chr1 4007557 4007558 rs10737395 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,C, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 615 chr1 4008336 4008337 rs10915358 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4011638 4011639 rs10753364 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 669.000000,4339.000000, 0.133586,0.866414, maf-5-some-pop 615 chr1 4012232 4012233 rs10915427 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 615 chr1 4015381 4015382 rs6681347 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1329.000000,3679.000000, 0.265375,0.734625, maf-5-some-pop,maf-5-all-pops 615 chr1 4022243 4022244 rs9426475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 885.000000,4123.000000, 0.176717,0.823283, maf-5-some-pop,genotype-conflict 615 chr1 4022464 4022465 rs10915469 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 615 chr1 4026067 4026068 rs12031275 0 + G G A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 3 A,G,T, 2263.000000,2743.000000,2.000000, 0.451877,0.547724,0.000399, maf-5-some-pop,maf-5-all-pops 615 chr1 4026727 4026728 rs7410846 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 879.000000,4129.000000, 0.175519,0.824481, maf-5-some-pop 615 chr1 4027589 4027590 rs6693909 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2244.000000,2764.000000, 0.448083,0.551917, maf-5-some-pop,maf-5-all-pops 615 chr1 4028281 4028282 rs4654521 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2746.000000,2262.000000, 0.548323,0.451677, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4028923 4028924 rs10915490 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop 615 chr1 4029732 4029733 rs10915495 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1051.000000,3957.000000, 0.209864,0.790136, maf-5-some-pop 615 chr1 4031025 4031026 rs10915497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 615 chr1 4031078 4031079 rs10915498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 615 chr1 4031326 4031327 rs3935162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop,genotype-conflict 615 chr1 4034096 4034097 rs12031557 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop 615 chr1 4036194 4036195 rs10753378 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4279.000000,729.000000, 0.854433,0.145567, maf-5-some-pop 615 chr1 4039144 4039145 rs4654428 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1902.000000,3106.000000, 0.379792,0.620208, maf-5-some-pop,maf-5-all-pops 615 chr1 4039439 4039440 rs12758410 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 615 chr1 4039832 4039833 rs11587314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4040154 4040155 rs4654525 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop 615 chr1 4054066 4054067 rs6691155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 615 chr1 4055279 4055280 rs7413013 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 615 chr1 4055626 4055627 rs9426501 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4409.000000,599.000000, 0.880391,0.119609, maf-5-some-pop 615 chr1 4057401 4057402 rs12733769 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 616 chr1 4073063 4073064 rs12023372 0 + G G C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 3 C,G,T, 1102.000000,3857.000000,49.000000, 0.220048,0.770168,0.009784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4078089 4078090 rs4654604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 616 chr1 4078447 4078448 rs4129100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 616 chr1 4078775 4078776 rs16840634 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 616 chr1 4080763 4080764 rs4323679 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2542.000000,2466.000000, 0.507588,0.492412, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4080779 4080780 rs4440829 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1233.000000,3775.000000, 0.246206,0.753794, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4082726 4082727 rs12025543 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,C, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4083030 4083031 rs12023925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,genotype-conflict 616 chr1 4085900 4085901 rs4654611 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop 616 chr1 4086826 4086827 rs4478781 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 904.000000,4104.000000,4104.000000,904.000000, 0.090256,0.409744,0.409744,0.090256, maf-5-some-pop 616 chr1 4088338 4088339 rs3813810 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1086.000000,3922.000000,3922.000000,1086.000000, 0.108427,0.391573,0.391573,0.108427, maf-5-some-pop 616 chr1 4088406 4088407 rs3829818 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4089258 4089259 rs12062024 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop 616 chr1 4089612 4089613 rs12080516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, maf-5-some-pop 616 chr1 4092903 4092904 rs10915657 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1312.000000,3696.000000, 0.261981,0.738019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4095094 4095095 rs4313364 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 90.000000,4918.000000,4918.000000,90.000000, 0.008986,0.491014,0.491014,0.008986, maf-5-some-pop 616 chr1 4095749 4095750 rs12409038 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 616 chr1 4097287 4097288 rs4292923 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3882.000000,1126.000000,1126.000000,3882.000000, 0.387580,0.112420,0.112420,0.387580, maf-5-some-pop 616 chr1 4111740 4111741 rs4553153 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop,maf-5-all-pops 616 chr1 4113095 4113096 rs4266850 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 616 chr1 4115643 4115644 rs4495664 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 4 A,C,G,T, 115.000000,4893.000000,4893.000000,115.000000, 0.011482,0.488518,0.488518,0.011482, 616 chr1 4116603 4116604 rs3856168 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 616 chr1 4117553 4117554 rs10915360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop 616 chr1 4119421 4119422 rs10915366 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 616 chr1 4119661 4119662 rs9792946 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop 616 chr1 4120555 4120556 rs4575054 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 616 chr1 4120897 4120898 rs4233258 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 616 chr1 4130683 4130684 rs4391636 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop,genotype-conflict 616 chr1 4131248 4131249 rs7537141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4131680 4131681 rs4381154 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 616 chr1 4132017 4132018 rs9628649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,maf-5-all-pops 616 chr1 4132125 4132126 rs9628650 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,genotype-conflict 616 chr1 4132776 4132777 rs7538658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,genotype-conflict 616 chr1 4132881 4132882 rs7529853 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 2413.000000,2595.000000, 0.481829,0.518171, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4133240 4133241 rs12021796 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1706.000000,3302.000000, 0.340655,0.659345, maf-5-some-pop,maf-5-all-pops 616 chr1 4136064 4136065 rs6686087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2124.000000,2884.000000, 0.424121,0.575879, maf-5-some-pop,maf-5-all-pops 616 chr1 4137041 4137042 rs10915417 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 616 chr1 4139930 4139931 rs4639725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop,maf-5-all-pops 616 chr1 4145614 4145615 rs10915421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4150784 4150785 rs12065003 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop,genotype-conflict 616 chr1 4152927 4152928 rs4481820 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop,maf-5-all-pops 616 chr1 4157197 4157198 rs4600014 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 616 chr1 4157841 4157842 rs4351611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1558.000000,3450.000000, 0.311102,0.688898, maf-5-some-pop,maf-5-all-pops 616 chr1 4158733 4158734 rs12031803 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 616 chr1 4158954 4158955 rs10915428 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 616 chr1 4160903 4160904 rs7523426 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop 616 chr1 4165197 4165198 rs12073797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 616 chr1 4166003 4166004 rs10399650 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2159.000000,2849.000000, 0.431110,0.568890, maf-5-some-pop,maf-5-all-pops 616 chr1 4167219 4167220 rs16840755 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 616 chr1 4167284 4167285 rs10915430 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop,genotype-conflict 616 chr1 4171342 4171343 rs6702575 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2806.000000,2202.000000, 0.560304,0.439696, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4171785 4171786 rs10492944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 616 chr1 4173505 4173506 rs16840790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 616 chr1 4174115 4174116 rs10915434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops 616 chr1 4176105 4176106 rs6670920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop 616 chr1 4177897 4177898 rs16840802 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,genotype-conflict 616 chr1 4178302 4178303 rs10737402 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4559.000000,449.000000, 0.910343,0.089657, maf-5-some-pop 616 chr1 4182784 4182785 rs4400585 0 + G G G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,microattr-tpa,genotype-conflict 616 chr1 4183005 4183006 rs10915437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3642.000000,1366.000000, 0.727236,0.272764, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4183257 4183258 rs10915438 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1155.000000,3853.000000, 0.230631,0.769369, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4194711 4194712 rs4131507 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop 617 chr1 4197417 4197418 rs4408122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2328.000000,2680.000000, 0.464856,0.535144, maf-5-some-pop,maf-5-all-pops 617 chr1 4201814 4201815 rs4654492 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop 617 chr1 4206209 4206210 rs9426471 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1350.000000,3658.000000, 0.269569,0.730431, maf-5-some-pop,maf-5-all-pops 617 chr1 4206287 4206288 rs9426494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2221.000000,2787.000000, 0.443490,0.556510, maf-5-some-pop,maf-5-all-pops 617 chr1 4207170 4207171 rs16840861 0 + A A A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 3892.000000,4.000000,1112.000000, 0.777156,0.000799,0.222045, maf-5-some-pop,genotype-conflict 617 chr1 4208917 4208918 rs9426495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1692.000000,3316.000000, 0.337859,0.662141, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4214827 4214828 rs41434152 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,AFFY_GWHS,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 1039.000000,3969.000000,3969.000000,1039.000000, 0.103734,0.396266,0.396266,0.103734, maf-5-some-pop 617 chr1 4217087 4217088 rs4589076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 799.000000,4209.000000, 0.159545,0.840455, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4220300 4220301 rs7549636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1078.000000,3930.000000, 0.215256,0.784744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4224557 4224558 rs4654497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 617 chr1 4227011 4227012 rs12065710 0 + C C A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 3 A,C,T, 553.000000,4379.000000,76.000000, 0.110423,0.874401,0.015176, maf-5-some-pop 617 chr1 4227319 4227320 rs16840873 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop 617 chr1 4227463 4227464 rs12123330 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4233809 4233810 rs6695203 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 617 chr1 4235682 4235683 rs4654500 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4235767 4235768 rs4654501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3887.000000,1121.000000, 0.776158,0.223842, maf-5-some-pop,maf-5-all-pops 617 chr1 4236981 4236982 rs4233262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1221.000000,3787.000000, 0.243810,0.756190, maf-5-some-pop,maf-5-all-pops 617 chr1 4237983 4237984 rs12030172 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 617 chr1 4240860 4240861 rs12074230 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3782.000000,1226.000000, 0.755192,0.244808, maf-5-some-pop,maf-5-all-pops 617 chr1 4263062 4263063 rs4654510 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4503.000000,505.000000, 0.899161,0.100839, maf-5-some-pop,genotype-conflict 617 chr1 4263982 4263983 rs4654511 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop,maf-5-all-pops 617 chr1 4268593 4268594 rs12095632 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2400.000000,2608.000000, 0.479233,0.520767, maf-5-some-pop,maf-5-all-pops 617 chr1 4268869 4268870 rs4130091 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 309.000000,4699.000000,4699.000000,309.000000, 0.030851,0.469149,0.469149,0.030851, maf-5-some-pop 617 chr1 4273841 4273842 rs10753372 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops 617 chr1 4275171 4275172 rs1495246 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 617 chr1 4275290 4275291 rs10915476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2656.000000,2352.000000, 0.530351,0.469649, maf-5-some-pop,maf-5-all-pops 617 chr1 4280169 4280170 rs6657617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop,maf-5-all-pops 617 chr1 4280629 4280630 rs4592237 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 617 chr1 4281159 4281160 rs10799216 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4281809 4281810 rs4233265 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 617 chr1 4282999 4283000 rs12120815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop 617 chr1 4283314 4283315 rs2132177 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4775.000000,233.000000,233.000000,4775.000000, 0.476737,0.023263,0.023263,0.476737, maf-5-some-pop 617 chr1 4284023 4284024 rs1809801 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 617 chr1 4284658 4284659 rs903540 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 1377.000000,3631.000000,3631.000000,1377.000000, 0.137480,0.362520,0.362520,0.137480, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4284918 4284919 rs7528938 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2432.000000,2576.000000, 0.485623,0.514377, maf-5-some-pop,maf-5-all-pops 617 chr1 4285990 4285991 rs16840958 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,genotype-conflict 617 chr1 4286035 4286036 rs16840960 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 617 chr1 4291286 4291287 rs16840968 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 682.000000,4326.000000, 0.136182,0.863818, maf-5-some-pop 617 chr1 4299726 4299727 rs7517989 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop,genotype-conflict 617 chr1 4302160 4302161 rs12124548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 617 chr1 4309033 4309034 rs12078298 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops 617 chr1 4316543 4316544 rs16841037 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop,genotype-conflict 617 chr1 4316687 4316688 rs964716 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 310.000000,4698.000000,4698.000000,310.000000, 0.030950,0.469050,0.469050,0.030950, maf-5-some-pop 617 chr1 4317770 4317771 rs10753376 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,G, 4010.000000,998.000000, 0.800719,0.199281, maf-5-some-pop,maf-5-all-pops 617 chr1 4318936 4318937 rs2201498 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 689.000000,4319.000000,4319.000000,689.000000, 0.068790,0.431210,0.431210,0.068790, maf-5-some-pop,maf-5-all-pops 617 chr1 4321466 4321467 rs10915489 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4322085 4322086 rs16841063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop 618 chr1 4326367 4326368 rs2411738 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1756.000000,3252.000000, 0.350639,0.649361, maf-5-some-pop,microattr-tpa 618 chr1 4326811 4326812 rs12085674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4969.000000,39.000000, 0.992212,0.007788, maf-5-some-pop 618 chr1 4327634 4327635 rs2101576 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1820.000000,3188.000000,3188.000000,1820.000000, 0.181709,0.318291,0.318291,0.181709, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4327863 4327864 rs10915493 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3509.000000,1499.000000, 0.700679,0.299321, maf-5-some-pop,maf-5-all-pops 618 chr1 4328765 4328766 rs10799221 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2119.000000,2889.000000, 0.423123,0.576877, maf-5-some-pop,maf-5-all-pops 618 chr1 4331782 4331783 rs4654426 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3156.000000,1852.000000, 0.630192,0.369808, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4340876 4340877 rs12059199 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop,genotype-conflict 618 chr1 4340990 4340991 rs12057139 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,genotype-conflict 618 chr1 4342603 4342604 rs1495244 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2128.000000,2880.000000, 0.424920,0.575080, maf-5-some-pop,maf-5-all-pops 618 chr1 4343433 4343434 rs6702000 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 2779.000000,2229.000000, 0.554912,0.445088, maf-5-some-pop,maf-5-all-pops 618 chr1 4343544 4343545 rs16838547 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 618 chr1 4343580 4343581 rs16838549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 618 chr1 4343734 4343735 rs17408082 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 618 chr1 4345497 4345498 rs16838559 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 618 chr1 4350858 4350859 rs12066140 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 618 chr1 4351887 4351888 rs16838560 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop 618 chr1 4352709 4352710 rs16838561 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1621.000000,3387.000000, 0.323682,0.676318, maf-5-some-pop 618 chr1 4354461 4354462 rs10915506 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 703.000000,4305.000000, 0.140375,0.859625, maf-5-some-pop,genotype-conflict 618 chr1 4359382 4359383 rs12564602 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 618 chr1 4364225 4364226 rs693734 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3696.000000,1312.000000,1312.000000,3696.000000, 0.369010,0.130990,0.130990,0.369010, maf-5-some-pop,maf-5-all-pops 618 chr1 4364406 4364407 rs2411745 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 486.000000,4522.000000,4522.000000,486.000000, 0.048522,0.451478,0.451478,0.048522, maf-5-some-pop 618 chr1 4364471 4364472 rs1106307 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1268.000000,3740.000000,3740.000000,1268.000000, 0.126597,0.373403,0.373403,0.126597, maf-5-some-pop 618 chr1 4364563 4364564 rs2132176 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1737.000000,3271.000000,3271.000000,1737.000000, 0.173423,0.326577,0.326577,0.173423, maf-5-some-pop,maf-5-all-pops 618 chr1 4367322 4367323 rs1490413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2507.000000,2501.000000, 0.500599,0.499401, maf-5-some-pop,maf-5-all-pops 618 chr1 4367388 4367389 rs16838591 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,genotype-conflict 618 chr1 4367581 4367582 rs12075294 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop 618 chr1 4367809 4367810 rs17448695 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop,genotype-conflict 618 chr1 4367877 4367878 rs6686753 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 618 chr1 4367921 4367922 rs1817914 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop 618 chr1 4368025 4368026 rs1817913 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3380.000000,1628.000000,1628.000000,3380.000000, 0.337460,0.162540,0.162540,0.337460, maf-5-some-pop,genotype-conflict 618 chr1 4368215 4368216 rs4654523 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop 618 chr1 4368270 4368271 rs10915508 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop 618 chr1 4368303 4368304 rs16838616 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop 618 chr1 4368440 4368441 rs351622 0 + A A A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop 618 chr1 4368818 4368819 rs351619 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4370073 4370074 rs1495239 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 918.000000,4090.000000,4090.000000,918.000000, 0.091653,0.408347,0.408347,0.091653, maf-5-some-pop,genotype-conflict 618 chr1 4370345 4370346 rs16838636 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 618 chr1 4370384 4370385 rs351615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4371862 4371863 rs351614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop,maf-5-all-pops 618 chr1 4371948 4371949 rs12132314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4342.000000,666.000000, 0.867013,0.132987, maf-5-some-pop,genotype-conflict 618 chr1 4372048 4372049 rs1495237 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 610.000000,4398.000000,4398.000000,610.000000, 0.060903,0.439097,0.439097,0.060903, maf-5-some-pop,genotype-conflict 618 chr1 4376815 4376816 rs3912751 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop,genotype-conflict 618 chr1 4377031 4377032 rs3912752 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 618 chr1 4377910 4377911 rs351596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 618 chr1 4378133 4378134 rs12744254 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 717.000000,4291.000000, 0.143171,0.856829, maf-5-some-pop 618 chr1 4379726 4379727 rs12408318 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,maf-5-all-pops 618 chr1 4379876 4379877 rs876273 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 2 C,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 618 chr1 4379957 4379958 rs351598 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2426.000000,2582.000000, 0.484425,0.515575, maf-5-some-pop 618 chr1 4380194 4380195 rs1874269 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3058.000000,1950.000000, 0.610623,0.389377, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4380343 4380344 rs2411741 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3817.000000,1191.000000,1191.000000,3817.000000, 0.381090,0.118910,0.118910,0.381090, maf-5-some-pop,genotype-conflict 618 chr1 4380517 4380518 rs7418164 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 618 chr1 4381015 4381016 rs2130618 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 C,G, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,genotype-conflict 618 chr1 4385178 4385179 rs351610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3152.000000,1856.000000, 0.629393,0.370607, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4385747 4385748 rs12042246 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 618 chr1 4387017 4387018 rs670072 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4141.000000,867.000000,867.000000,4141.000000, 0.413438,0.086562,0.086562,0.413438, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4388757 4388758 rs12042782 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop 618 chr1 4388884 4388885 rs641473 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2056.000000,2952.000000,2952.000000,2056.000000, 0.205272,0.294728,0.294728,0.205272, maf-5-some-pop,maf-5-all-pops 618 chr1 4389198 4389199 rs581070 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2099.000000,2909.000000, 0.419129,0.580871, maf-5-some-pop,maf-5-all-pops 618 chr1 4389261 4389262 rs639739 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 971.000000,4037.000000,4037.000000,971.000000, 0.096945,0.403055,0.403055,0.096945, maf-5-some-pop 618 chr1 4390210 4390211 rs501284 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4390229 4390230 rs501334 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2002.000000,3006.000000,3006.000000,2002.000000, 0.199880,0.300120,0.300120,0.199880, maf-5-some-pop,maf-5-all-pops 618 chr1 4395019 4395020 rs12046130 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 618 chr1 4395234 4395235 rs12117178 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop,genotype-conflict 618 chr1 4396551 4396552 rs496925 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 1506.000000,806.000000, 0.651384,0.348616, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4397913 4397914 rs1691449 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop 618 chr1 4398327 4398328 rs590925 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,maf-5-all-pops 618 chr1 4398695 4398696 rs592386 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4400.000000,608.000000, 0.878594,0.121406, maf-5-some-pop 618 chr1 4402713 4402714 rs10915517 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop 618 chr1 4402851 4402852 rs590537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops 618 chr1 4402900 4402901 rs565452 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4075.000000,933.000000,933.000000,4075.000000, 0.406849,0.093151,0.093151,0.406849, maf-5-some-pop,maf-5-all-pops 618 chr1 4407984 4407985 rs523634 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4045.000000,963.000000,963.000000,4045.000000, 0.403854,0.096146,0.096146,0.403854, maf-5-some-pop,maf-5-all-pops 618 chr1 4408074 4408075 rs12139755 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 618 chr1 4408305 4408306 rs585160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4043.000000,965.000000, 0.807308,0.192692, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4409495 4409496 rs600933 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2090.000000,2918.000000, 0.417332,0.582668, maf-5-some-pop,maf-5-all-pops 618 chr1 4414085 4414086 rs598894 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 963.000000,4045.000000,4045.000000,963.000000, 0.096146,0.403854,0.403854,0.096146, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4414153 4414154 rs527351 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 966.000000,4042.000000,4042.000000,966.000000, 0.096446,0.403554,0.403554,0.096446, maf-5-some-pop,maf-5-all-pops 618 chr1 4414715 4414716 rs596133 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2081.000000,2927.000000,2927.000000,2081.000000, 0.207768,0.292232,0.292232,0.207768, maf-5-some-pop,genotype-conflict 618 chr1 4414823 4414824 rs585281 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 967.000000,4041.000000,4041.000000,967.000000, 0.096546,0.403454,0.403454,0.096546, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4417960 4417961 rs12022854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 618 chr1 4422004 4422005 rs349391 0 - T T A/G genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2184.000000,2824.000000,2824.000000,2184.000000, 0.218051,0.281949,0.281949,0.218051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4422229 4422230 rs16838800 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4423895 4423896 rs349390 0 - T T A/G genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 2035.000000,2973.000000,2973.000000,2035.000000, 0.203175,0.296825,0.296825,0.203175, maf-5-some-pop,maf-5-all-pops 618 chr1 4424114 4424115 rs16838812 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop 618 chr1 4424144 4424145 rs16838813 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,SSMP,TISHKOFF, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,genotype-conflict 618 chr1 4425875 4425876 rs12404603 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4569.000000,439.000000, 0.912340,0.087660, maf-5-some-pop 618 chr1 4426417 4426418 rs349387 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 715.000000,4293.000000,4293.000000,715.000000, 0.071386,0.428614,0.428614,0.071386, maf-5-some-pop,genotype-conflict 618 chr1 4426477 4426478 rs16838819 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop,maf-5-all-pops 618 chr1 4426796 4426797 rs1032325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4427082 4427083 rs12023786 0 + G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 618 chr1 4427522 4427523 rs12119772 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 618 chr1 4427561 4427562 rs7519313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop 618 chr1 4428594 4428595 rs12029905 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 618 chr1 4434973 4434974 rs661536 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 357.000000,4651.000000,4651.000000,357.000000, 0.035643,0.464357,0.464357,0.035643, maf-5-some-pop 618 chr1 4435269 4435270 rs727658 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1279.000000,3729.000000,3729.000000,1279.000000, 0.127696,0.372304,0.372304,0.127696, maf-5-some-pop,genotype-conflict 618 chr1 4436020 4436021 rs2926484 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4062.000000,946.000000,946.000000,4062.000000, 0.405551,0.094449,0.094449,0.405551, maf-5-some-pop 618 chr1 4440597 4440598 rs16838830 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 277.000000,4731.000000, 0.055312,0.944688, maf-5-some-pop,maf-5-all-pops 618 chr1 4440748 4440749 rs589870 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 648.000000,4360.000000,4360.000000,648.000000, 0.064696,0.435304,0.435304,0.064696, maf-5-some-pop,genotype-conflict 618 chr1 4440977 4440978 rs1845636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 693.000000,4315.000000, 0.138379,0.861621, maf-5-some-pop,genotype-conflict 618 chr1 4441166 4441167 rs1495249 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3847.000000,1161.000000,1161.000000,3847.000000, 0.384085,0.115915,0.115915,0.384085, maf-5-some-pop 618 chr1 4442486 4442487 rs6697594 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop 618 chr1 4443107 4443108 rs12037374 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3827.000000,1181.000000, 0.764177,0.235823, maf-5-some-pop,genotype-conflict 618 chr1 4443385 4443386 rs12035324 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 793.000000,4215.000000, 0.158347,0.841653, maf-5-some-pop,genotype-conflict 618 chr1 4444538 4444539 rs239339 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4307.000000,701.000000, 0.860024,0.139976, maf-5-some-pop,microattr-tpa 618 chr1 4444705 4444706 rs349413 0 + C C A/C genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop 618 chr1 4447420 4447421 rs10915521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop 618 chr1 4453303 4453304 rs12039284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop,genotype-conflict 618 chr1 4454511 4454512 rs16838915 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3419.000000,1589.000000, 0.682708,0.317292, maf-5-some-pop 618 chr1 4455414 4455415 rs349415 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops 618 chr1 4456046 4456047 rs16838922 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 618 chr1 4456276 4456277 rs7521665 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1244.000000,3764.000000, 0.248403,0.751597, maf-5-some-pop 619 chr1 4456532 4456533 rs7552146 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1246.000000,3762.000000, 0.248802,0.751198, maf-5-some-pop,genotype-conflict 619 chr1 4457111 4457112 rs16838929 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3948.000000,1060.000000, 0.788339,0.211661, maf-5-some-pop 619 chr1 4458067 4458068 rs349417 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4459048 4459049 rs12042555 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop 619 chr1 4459619 4459620 rs12043406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3769.000000,1239.000000, 0.752596,0.247404, maf-5-some-pop 619 chr1 4459688 4459689 rs6679220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1539.000000,3469.000000, 0.307308,0.692692, maf-5-some-pop,maf-5-all-pops,microattr-tpa 619 chr1 4459702 4459703 rs16838943 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop 619 chr1 4460261 4460262 rs12043606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3762.000000,1246.000000, 0.751198,0.248802, maf-5-some-pop 619 chr1 4460704 4460705 rs1870506 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1250.000000,3758.000000, 0.249601,0.750399, maf-5-some-pop 619 chr1 4462459 4462460 rs349400 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2299.000000,2709.000000, 0.459065,0.540935, maf-5-some-pop,maf-5-all-pops 619 chr1 4462903 4462904 rs12046579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop 619 chr1 4464441 4464442 rs4347181 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop 619 chr1 4464932 4464933 rs12116790 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4569.000000,439.000000, 0.912340,0.087660, maf-5-some-pop 619 chr1 4466534 4466535 rs10915525 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop 619 chr1 4467973 4467974 rs10799232 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,genotype-conflict 619 chr1 4470528 4470529 rs12023230 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 619 chr1 4471373 4471374 rs10915528 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop 619 chr1 4471433 4471434 rs508647 0 - T T A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4323.000000,685.000000,685.000000,4323.000000, 0.431609,0.068391,0.068391,0.431609, maf-5-some-pop 619 chr1 4471732 4471733 rs505933 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1213.000000,3795.000000,3795.000000,1213.000000, 0.121106,0.378894,0.378894,0.121106, maf-5-some-pop,maf-5-all-pops 619 chr1 4471883 4471884 rs2130620 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 4590.000000,418.000000,418.000000,4590.000000, 0.458267,0.041733,0.041733,0.458267, maf-5-some-pop 619 chr1 4472025 4472026 rs659514 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop,maf-5-all-pops 619 chr1 4476383 4476384 rs4654534 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop 619 chr1 4477910 4477911 rs349409 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 619 chr1 4481214 4481215 rs4654432 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3486.000000,1522.000000, 0.696086,0.303914, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 619 chr1 4481631 4481632 rs4654433 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 619 chr1 4482001 4482002 rs12026870 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 619 chr1 4482609 4482610 rs737324 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 619 chr1 4490337 4490338 rs6676603 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3480.000000,1528.000000, 0.694888,0.305112, maf-5-some-pop,maf-5-all-pops 619 chr1 4490620 4490621 rs12128251 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3822.000000,1186.000000, 0.763179,0.236821, maf-5-some-pop 619 chr1 4491746 4491747 rs17452433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 619 chr1 4492423 4492424 rs6681282 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 619 chr1 4493687 4493688 rs1565452 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 619 chr1 4496658 4496659 rs1674877 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4496705 4496706 rs16839003 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop,genotype-conflict 619 chr1 4497096 4497097 rs1335364 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1141.000000,3867.000000,3867.000000,1141.000000, 0.113918,0.386082,0.386082,0.113918, maf-5-some-pop,maf-5-all-pops 619 chr1 4497117 4497118 rs6660514 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 619 chr1 4497129 4497130 rs1335363 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4737.000000,271.000000,271.000000,4737.000000, 0.472943,0.027057,0.027057,0.472943, maf-5-some-pop 619 chr1 4500435 4500436 rs12731060 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 619 chr1 4501983 4501984 rs780573 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,genotype-conflict 619 chr1 4504430 4504431 rs10915540 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 619 chr1 4504570 4504571 rs7531965 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,genotype-conflict 619 chr1 4504926 4504927 rs780586 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4505511 4505512 rs10915541 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 619 chr1 4505965 4505966 rs780587 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 556.000000,4452.000000,4452.000000,556.000000, 0.055511,0.444489,0.444489,0.055511, maf-5-some-pop 619 chr1 4506844 4506845 rs10799233 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4357.000000,651.000000, 0.870008,0.129992, maf-5-some-pop 619 chr1 4507762 4507763 rs780594 0 + T T C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop 619 chr1 4508347 4508348 rs17453210 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,genotype-conflict 619 chr1 4510419 4510420 rs12564622 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 619 chr1 4521735 4521736 rs619729 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2872.000000,2136.000000,2136.000000,2872.000000, 0.286741,0.213259,0.213259,0.286741, maf-5-some-pop,maf-5-all-pops 619 chr1 4522465 4522466 rs10737409 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 619 chr1 4523356 4523357 rs664520 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 657.000000,4351.000000, 0.131190,0.868810, maf-5-some-pop 619 chr1 4523409 4523410 rs17453664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop 619 chr1 4529102 4529103 rs7526548 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 619 chr1 4529543 4529544 rs10915545 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 619 chr1 4532683 4532684 rs12142580 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 619 chr1 4532710 4532711 rs12142584 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4536675 4536676 rs6426417 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1545.000000,3463.000000, 0.308506,0.691494, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4540794 4540795 rs1037800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 619 chr1 4541424 4541425 rs6426418 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,genotype-conflict 619 chr1 4541443 4541444 rs16839089 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop,genotype-conflict 619 chr1 4543241 4543242 rs16839093 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 619 chr1 4544792 4544793 rs350171 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 G,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop,genotype-conflict 619 chr1 4546208 4546209 rs16839101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop 619 chr1 4549100 4549101 rs350186 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 314.000000,4694.000000, 0.062700,0.937300, maf-5-some-pop 619 chr1 4549306 4549307 rs705689 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,genotype-conflict 619 chr1 4549379 4549380 rs705690 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3804.000000,1204.000000, 0.759585,0.240415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4549401 4549402 rs780606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1930.000000,3078.000000, 0.385383,0.614617, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4549932 4549933 rs350187 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop,genotype-conflict 619 chr1 4550752 4550753 rs780608 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 2 G,T, 4372.000000,636.000000, 0.873003,0.126997, maf-5-some-pop 619 chr1 4551454 4551455 rs780611 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop 619 chr1 4551678 4551679 rs780614 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop,genotype-conflict 619 chr1 4552058 4552059 rs350189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,genotype-conflict 619 chr1 4552088 4552089 rs350190 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop 619 chr1 4558012 4558013 rs9659744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2042.000000,2966.000000, 0.407748,0.592252, maf-5-some-pop,maf-5-all-pops 619 chr1 4558791 4558792 rs10915548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1992.000000,3016.000000, 0.397764,0.602236, maf-5-some-pop,maf-5-all-pops 619 chr1 4558971 4558972 rs13374152 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop 619 chr1 4559483 4559484 rs616317 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 619 chr1 4559900 4559901 rs4654438 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2663.000000,2345.000000, 0.531749,0.468251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4561164 4561165 rs676853 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 619 chr1 4561466 4561467 rs678246 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop 619 chr1 4562044 4562045 rs583027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 619 chr1 4562269 4562270 rs11802495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop 619 chr1 4564683 4564684 rs350165 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 4 A,C,G,T, 377.000000,4631.000000,4631.000000,377.000000, 0.037640,0.462360,0.462360,0.037640, maf-5-some-pop,genotype-conflict 619 chr1 4565905 4565906 rs10753381 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1989.000000,3019.000000, 0.397165,0.602835, maf-5-some-pop,maf-5-all-pops 619 chr1 4566052 4566053 rs10753382 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3115.000000,1893.000000, 0.622005,0.377995, maf-5-some-pop,maf-5-all-pops 619 chr1 4566064 4566065 rs4654440 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,maf-5-all-pops 619 chr1 4569546 4569547 rs10799241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops 619 chr1 4571739 4571740 rs1710415 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 897.000000,4111.000000,4111.000000,897.000000, 0.089557,0.410443,0.410443,0.089557, maf-5-some-pop,maf-5-all-pops 619 chr1 4576969 4576970 rs670296 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop 619 chr1 4577119 4577120 rs4654443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 619 chr1 4578494 4578495 rs6703696 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4570.000000,438.000000, 0.912540,0.087460, maf-5-some-pop,genotype-conflict 619 chr1 4578727 4578728 rs17348734 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop,genotype-conflict 619 chr1 4578789 4578790 rs12038994 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop 619 chr1 4578892 4578893 rs16839198 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4579238 4579239 rs12039101 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3004.000000,2004.000000, 0.599840,0.400160, maf-5-some-pop,maf-5-all-pops 619 chr1 4579257 4579258 rs1229148 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 619 chr1 4579980 4579981 rs13375249 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 619 chr1 4580134 4580135 rs13375764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop 619 chr1 4581265 4581266 rs685831 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 4 A,C,G,T, 794.000000,4214.000000,4214.000000,794.000000, 0.079273,0.420727,0.420727,0.079273, maf-5-some-pop,genotype-conflict 619 chr1 4581337 4581338 rs12039710 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,genotype-conflict 619 chr1 4581622 4581623 rs607850 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3734.000000,1274.000000,1274.000000,3734.000000, 0.372804,0.127196,0.127196,0.372804, maf-5-some-pop,genotype-conflict 619 chr1 4582088 4582089 rs518456 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2182.000000,2826.000000, 0.435703,0.564297, maf-5-some-pop,maf-5-all-pops 619 chr1 4582198 4582199 rs10489135 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4293.000000,715.000000,715.000000,4293.000000, 0.428614,0.071386,0.071386,0.428614, maf-5-some-pop,microattr-tpa,genotype-conflict 619 chr1 4586605 4586606 rs780983 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4184.000000,824.000000, 0.835463,0.164537, maf-5-some-pop,maf-5-all-pops 619 chr1 4587176 4587177 rs241239 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop 619 chr1 4587518 4587519 rs241238 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop 620 chr1 4587594 4587595 rs10915551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4573.000000,435.000000, 0.913139,0.086861, maf-5-some-pop 620 chr1 4587968 4587969 rs241237 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2251.000000,2757.000000,2757.000000,2251.000000, 0.224740,0.275260,0.275260,0.224740, maf-5-some-pop 620 chr1 4593613 4593614 rs241228 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP, 4 A,C,G,T, 4714.000000,294.000000,294.000000,4714.000000, 0.470647,0.029353,0.029353,0.470647, maf-5-some-pop 620 chr1 4603323 4603324 rs694935 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2479.000000,2529.000000, 0.495008,0.504992, maf-5-some-pop,maf-5-all-pops 620 chr1 4603867 4603868 rs6691031 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1403.000000,3605.000000, 0.280152,0.719848, maf-5-some-pop 620 chr1 4604103 4604104 rs241215 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1938.000000,3070.000000, 0.386981,0.613019, maf-5-some-pop,maf-5-all-pops 620 chr1 4605402 4605403 rs17348839 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,genotype-conflict 620 chr1 4605421 4605422 rs241218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4606470 4606471 rs12092980 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4416.000000,592.000000, 0.881789,0.118211, maf-5-some-pop 620 chr1 4610147 4610148 rs6690675 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop,genotype-conflict 620 chr1 4610249 4610250 rs241244 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1699.000000,3309.000000, 0.339257,0.660743, maf-5-some-pop,maf-5-all-pops 620 chr1 4611298 4611299 rs7542801 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop,genotype-conflict 620 chr1 4611434 4611435 rs7549444 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,maf-5-all-pops 620 chr1 4612839 4612840 rs12728076 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop,maf-5-all-pops 620 chr1 4614511 4614512 rs241256 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops 620 chr1 4614821 4614822 rs241257 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2249.000000,2759.000000,2759.000000,2249.000000, 0.224541,0.275459,0.275459,0.224541, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4615012 4615013 rs171319 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 680.000000,4328.000000,4328.000000,680.000000, 0.067891,0.432109,0.432109,0.067891, maf-5-some-pop,genotype-conflict 620 chr1 4615330 4615331 rs4654556 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1159.000000,3849.000000, 0.231430,0.768570, maf-5-some-pop,maf-5-all-pops 620 chr1 4616065 4616066 rs241260 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1635.000000,3373.000000, 0.326478,0.673522, maf-5-some-pop,maf-5-all-pops 620 chr1 4616101 4616102 rs241261 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3375.000000,1633.000000, 0.673922,0.326078, maf-5-some-pop,maf-5-all-pops 620 chr1 4617855 4617856 rs10799244 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop,genotype-conflict 620 chr1 4620995 4620996 rs12120353 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,C, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop,genotype-conflict 620 chr1 4625188 4625189 rs241270 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops 620 chr1 4627978 4627979 rs241275 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3295.000000,1713.000000, 0.657947,0.342053, maf-5-some-pop,maf-5-all-pops 620 chr1 4628569 4628570 rs10915561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 620 chr1 4629407 4629408 rs241278 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop 620 chr1 4630341 4630342 rs16839328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4630482 4630483 rs7526879 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop 620 chr1 4631265 4631266 rs241212 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 821.000000,4187.000000,4187.000000,821.000000, 0.081969,0.418031,0.418031,0.081969, maf-5-some-pop 620 chr1 4634977 4634978 rs1541318 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3894.000000,1114.000000,1114.000000,3894.000000, 0.388778,0.111222,0.111222,0.388778, maf-5-some-pop,genotype-conflict 620 chr1 4640901 4640902 rs1024139 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3380.000000,1628.000000,1628.000000,3380.000000, 0.337460,0.162540,0.162540,0.337460, maf-5-some-pop,maf-5-all-pops 620 chr1 4641741 4641742 rs241225 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4193.000000,815.000000,815.000000,4193.000000, 0.418630,0.081370,0.081370,0.418630, maf-5-some-pop,genotype-conflict 620 chr1 4641798 4641799 rs241224 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4206.000000,802.000000,802.000000,4206.000000, 0.419928,0.080072,0.080072,0.419928, maf-5-some-pop,genotype-conflict 620 chr1 4643687 4643688 rs515279 0 - T T A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 22 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 728.000000,4280.000000,4280.000000,728.000000, 0.072684,0.427316,0.427316,0.072684, maf-5-some-pop 620 chr1 4646378 4646379 rs619364 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 620 chr1 4646484 4646485 rs536749 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 837.000000,4171.000000,4171.000000,837.000000, 0.083566,0.416434,0.416434,0.083566, maf-5-some-pop,genotype-conflict 620 chr1 4646962 4646963 rs532259 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4174.000000,834.000000,834.000000,4174.000000, 0.416733,0.083267,0.083267,0.416733, maf-5-some-pop,genotype-conflict 620 chr1 4651203 4651204 rs12079284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1019.000000,3989.000000, 0.203474,0.796526, maf-5-some-pop,maf-5-all-pops 620 chr1 4652283 4652284 rs17349020 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4659.000000,349.000000, 0.930312,0.069688, maf-5-some-pop,genotype-conflict 620 chr1 4652511 4652512 rs164772 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4387.000000,621.000000,621.000000,4387.000000, 0.437999,0.062001,0.062001,0.437999, maf-5-some-pop,genotype-conflict 620 chr1 4653092 4653093 rs7518655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 620 chr1 4653263 4653264 rs7518781 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 620 chr1 4656146 4656147 rs6426423 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops 620 chr1 4656697 4656698 rs129794 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1067.000000,3941.000000,3941.000000,1067.000000, 0.106530,0.393470,0.393470,0.106530, maf-5-some-pop 620 chr1 4657048 4657049 rs526695 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 755.000000,4253.000000,4253.000000,755.000000, 0.075379,0.424621,0.424621,0.075379, maf-5-some-pop,genotype-conflict 620 chr1 4657294 4657295 rs651695 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop,maf-5-all-pops 620 chr1 4658460 4658461 rs16839354 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 37.000000,4971.000000, 0.007388,0.992612, maf-5-some-pop 620 chr1 4658537 4658538 rs12567277 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2319.000000,2689.000000, 0.463059,0.536941, maf-5-some-pop,genotype-conflict 620 chr1 4662531 4662532 rs618751 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1023.000000,3985.000000,3985.000000,1023.000000, 0.102137,0.397863,0.397863,0.102137, maf-5-some-pop,genotype-conflict 620 chr1 4665231 4665232 rs164781 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1921.000000,3087.000000,3087.000000,1921.000000, 0.191793,0.308207,0.308207,0.191793, maf-5-some-pop 620 chr1 4666493 4666494 rs164780 0 - C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4667995 4667996 rs12141994 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,genotype-conflict 620 chr1 4668422 4668423 rs11590266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,genotype-conflict 620 chr1 4672754 4672755 rs6703429 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1327.000000,3681.000000, 0.264976,0.735024, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4673936 4673937 rs10489133 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 4 A,C,G,T, 89.000000,4919.000000,4919.000000,89.000000, 0.008886,0.491114,0.491114,0.008886, maf-5-some-pop 620 chr1 4674025 4674026 rs763219 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3546.000000,1462.000000,1462.000000,3546.000000, 0.354034,0.145966,0.145966,0.354034, maf-5-some-pop,genotype-conflict 620 chr1 4677534 4677535 rs4403602 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2934.000000,2074.000000, 0.585863,0.414137, maf-5-some-pop,maf-5-all-pops 620 chr1 4679562 4679563 rs12145928 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 580.000000,4428.000000, 0.115815,0.884185, maf-5-some-pop 620 chr1 4682103 4682104 rs6668002 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops,microattr-tpa 620 chr1 4682229 4682230 rs12026258 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop 620 chr1 4682272 4682273 rs6668199 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops 620 chr1 4682531 4682532 rs12403290 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 620 chr1 4682721 4682722 rs12029434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop 620 chr1 4685647 4685648 rs875808 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2429.000000,2579.000000,2579.000000,2429.000000, 0.242512,0.257488,0.257488,0.242512, maf-5-some-pop 620 chr1 4687281 4687282 rs2269620 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4079.000000,929.000000,929.000000,4079.000000, 0.407248,0.092752,0.092752,0.407248, maf-5-some-pop 620 chr1 4687873 4687874 rs7553610 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1680.000000,3328.000000, 0.335463,0.664537, maf-5-some-pop,maf-5-all-pops 620 chr1 4688032 4688033 rs6662425 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2772.000000,2236.000000, 0.553514,0.446486, maf-5-some-pop,maf-5-all-pops 620 chr1 4688160 4688161 rs6426430 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop 620 chr1 4690892 4690893 rs7527078 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3073.000000,1935.000000, 0.613618,0.386382, maf-5-some-pop,genotype-conflict 620 chr1 4691859 4691860 rs10799249 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,genotype-conflict 620 chr1 4693930 4693931 rs6687814 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2857.000000,2151.000000, 0.570487,0.429513, maf-5-some-pop,maf-5-all-pops 620 chr1 4694597 4694598 rs12405615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop 620 chr1 4696091 4696092 rs2071967 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1522.000000,3486.000000,3486.000000,1522.000000, 0.151957,0.348043,0.348043,0.151957, maf-5-some-pop,genotype-conflict 620 chr1 4696370 4696371 rs12744374 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop 620 chr1 4697299 4697300 rs2101195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2792.000000,2216.000000, 0.557508,0.442492, maf-5-some-pop,maf-5-all-pops 620 chr1 4705930 4705931 rs7533451 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 620 chr1 4706754 4706755 rs12125737 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3307.000000,1701.000000, 0.660343,0.339657, maf-5-some-pop,maf-5-all-pops 620 chr1 4712483 4712484 rs6702210 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 620 chr1 4717339 4717340 rs900501 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4717390 4717391 rs1483198 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4055.000000,953.000000, 0.809704,0.190296, maf-5-some-pop,genotype-conflict 620 chr1 4718550 4718551 rs3947662 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,genotype-conflict 621 chr1 4722430 4722431 rs2035454 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 621 chr1 4722442 4722443 rs1531830 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 621 chr1 4723817 4723818 rs12083131 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4723841 4723842 rs12083135 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 514.000000,4494.000000, 0.102636,0.897364, maf-5-some-pop 621 chr1 4723916 4723917 rs10915578 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3847.000000,1161.000000, 0.768171,0.231829, maf-5-some-pop 621 chr1 4724012 4724013 rs10915579 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 937.000000,4071.000000, 0.187101,0.812899, maf-5-some-pop,genotype-conflict 621 chr1 4724047 4724048 rs17455108 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 621 chr1 4724269 4724270 rs12140542 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop 621 chr1 4730282 4730283 rs4654582 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop,maf-5-all-pops 621 chr1 4731676 4731677 rs10799255 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3265.000000,1743.000000, 0.651957,0.348043, maf-5-some-pop,maf-5-all-pops 621 chr1 4731927 4731928 rs11587129 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1636.000000,3372.000000, 0.326677,0.673323, maf-5-some-pop 621 chr1 4732131 4732132 rs12138000 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 621 chr1 4732333 4732334 rs1564666 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop 621 chr1 4733792 4733793 rs12409187 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 626.000000,4382.000000, 0.125000,0.875000, maf-5-some-pop,genotype-conflict 621 chr1 4734513 4734514 rs12411035 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop,maf-5-all-pops 621 chr1 4735055 4735056 rs13376219 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1074.000000,3934.000000, 0.214457,0.785543, maf-5-some-pop,maf-5-all-pops 621 chr1 4735907 4735908 rs16839447 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop,genotype-conflict 621 chr1 4736455 4736456 rs10915584 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,genotype-conflict 621 chr1 4737382 4737383 rs11588881 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,genotype-conflict 621 chr1 4737530 4737531 rs16839450 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4035.000000,973.000000, 0.805711,0.194289, maf-5-some-pop,maf-5-all-pops 621 chr1 4737604 4737605 rs2071989 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4737692 4737693 rs16839451 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop 621 chr1 4738393 4738394 rs2071992 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 621 chr1 4738677 4738678 rs2071995 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4067.000000,941.000000, 0.812101,0.187899, maf-5-some-pop,maf-5-all-pops 621 chr1 4739317 4739318 rs10799257 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4739424 4739425 rs11809744 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 948.000000,4060.000000, 0.189297,0.810703, maf-5-some-pop,maf-5-all-pops 621 chr1 4746635 4746636 rs10915587 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1948.000000,3060.000000, 0.388978,0.611022, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4747662 4747663 rs16839462 0 + G G C/G genomic single unknown 0 0 intron exact 1 MixedObserved 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 930.000000,4078.000000, 0.185703,0.814297, maf-5-some-pop 621 chr1 4747736 4747737 rs12747700 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1241.000000,3767.000000, 0.247804,0.752196, maf-5-some-pop 621 chr1 4749075 4749076 rs4092257 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2978.000000,2030.000000, 0.594649,0.405351, maf-5-some-pop,maf-5-all-pops 621 chr1 4750118 4750119 rs16839468 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 621 chr1 4754056 4754057 rs7525374 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 621 chr1 4757231 4757232 rs7549821 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 621 chr1 4758168 4758169 rs2071997 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4518.000000,490.000000, 0.902156,0.097843, maf-5-some-pop 621 chr1 4758438 4758439 rs11800746 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 621 chr1 4763188 4763189 rs6686733 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 932.000000,4076.000000, 0.186102,0.813898, maf-5-some-pop,maf-5-all-pops 621 chr1 4764154 4764155 rs4654589 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop 621 chr1 4770903 4770904 rs1483197 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2456.000000,2552.000000, 0.490415,0.509585, maf-5-some-pop,maf-5-all-pops 621 chr1 4773265 4773266 rs2071999 0 + A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 3 A,C,G, 3068.000000,1869.000000,71.000000, 0.612620,0.373203,0.014177, maf-5-some-pop,maf-5-all-pops 621 chr1 4774437 4774438 rs242058 0 + T T C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 621 chr1 4777626 4777627 rs16839502 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4443.000000,565.000000, 0.887181,0.112819, maf-5-some-pop,genotype-conflict 621 chr1 4778231 4778232 rs3766959 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2353.000000,2655.000000, 0.469848,0.530152, maf-5-some-pop,maf-5-all-pops 621 chr1 4780749 4780750 rs3820250 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop 621 chr1 4781150 4781151 rs3820251 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 621 chr1 4781921 4781922 rs12135881 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 621 chr1 4787413 4787414 rs16839525 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 621 chr1 4788353 4788354 rs3766962 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,genotype-conflict 621 chr1 4792183 4792184 rs3766964 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4792653 4792654 rs4448488 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 621 chr1 4793579 4793580 rs16839536 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,genotype-conflict 621 chr1 4794113 4794114 rs442170 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,WUGSC_SSAHASNP,YUSUKE, 2 C,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 621 chr1 4796557 4796558 rs392630 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 915.000000,4093.000000, 0.182708,0.817292, maf-5-some-pop,genotype-conflict 621 chr1 4797497 4797498 rs544738 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3854.000000,1154.000000, 0.769569,0.230431, maf-5-some-pop,maf-5-all-pops 621 chr1 4799199 4799200 rs3753702 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 621 chr1 4799269 4799270 rs449181 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop 621 chr1 4802512 4802513 rs448741 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop,maf-5-all-pops 621 chr1 4802727 4802728 rs431966 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 621 chr1 4803264 4803265 rs367673 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 621 chr1 4803833 4803834 rs393976 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2336.000000,2672.000000, 0.466454,0.533546, maf-5-some-pop 621 chr1 4805105 4805106 rs414176 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop 621 chr1 4805886 4805887 rs9787371 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,genotype-conflict 621 chr1 4809119 4809120 rs2802720 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 924.000000,4084.000000,4084.000000,924.000000, 0.092252,0.407748,0.407748,0.092252, maf-5-some-pop 621 chr1 4809490 4809491 rs12090274 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 621 chr1 4811382 4811383 rs449154 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, maf-5-some-pop 621 chr1 4812814 4812815 rs381240 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3658.000000,1350.000000,1350.000000,3658.000000, 0.365216,0.134784,0.134784,0.365216, maf-5-some-pop 621 chr1 4814116 4814117 rs434474 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 621 chr1 4814399 4814400 rs428001 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1580.000000,3428.000000, 0.315495,0.684505, maf-5-some-pop,genotype-conflict 621 chr1 4814750 4814751 rs3766969 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 372.000000,4636.000000, 0.074281,0.925719, maf-5-some-pop,genotype-conflict 621 chr1 4816186 4816187 rs3820255 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop,genotype-conflict 621 chr1 4816201 4816202 rs12022212 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,genotype-conflict 621 chr1 4817507 4817508 rs11591221 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 621 chr1 4817716 4817717 rs16838479 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop 621 chr1 4818362 4818363 rs7537345 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop 621 chr1 4819802 4819803 rs368420 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3277.000000,1731.000000, 0.654353,0.345647, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4820798 4820799 rs397559 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 621 chr1 4820965 4820966 rs879092 0 - A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TSC-CSHL,WUGSC_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 621 chr1 4821296 4821297 rs443850 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 803.000000,4205.000000,4205.000000,803.000000, 0.080172,0.419828,0.419828,0.080172, maf-5-some-pop,genotype-conflict 621 chr1 4824310 4824311 rs12066439 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 621 chr1 4825151 4825152 rs2743979 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1250.000000,3758.000000, 0.249601,0.750399, maf-5-some-pop,genotype-conflict 621 chr1 4826103 4826104 rs2802716 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1260.000000,3748.000000,3748.000000,1260.000000, 0.125799,0.374201,0.374201,0.125799, maf-5-some-pop 621 chr1 4830484 4830485 rs16839634 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,genotype-conflict 621 chr1 4831994 4831995 rs12030346 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3787.000000,1221.000000, 0.756190,0.243810, maf-5-some-pop,maf-5-all-pops 621 chr1 4833746 4833747 rs12029492 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,genotype-conflict 621 chr1 4835892 4835893 rs874613 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 621 chr1 4838240 4838241 rs414909 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop,genotype-conflict 621 chr1 4844822 4844823 rs41355644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 621 chr1 4845111 4845112 rs9426484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop 621 chr1 4845891 4845892 rs6426434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop 621 chr1 4847593 4847594 rs11805709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3855.000000,1153.000000, 0.769768,0.230232, maf-5-some-pop 622 chr1 4851208 4851209 rs2235441 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop,genotype-conflict 622 chr1 4853067 4853068 rs12408533 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 622 chr1 4858407 4858408 rs4654606 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4859307 4859308 rs10158511 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 690.000000,4318.000000, 0.137780,0.862220, maf-5-some-pop 622 chr1 4859487 4859488 rs17345273 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop 622 chr1 4859863 4859864 rs16839672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 485.000000,4523.000000, 0.096845,0.903155, maf-5-some-pop 622 chr1 4864984 4864985 rs10915606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3181.000000,1827.000000, 0.635184,0.364816, maf-5-some-pop 622 chr1 4867548 4867549 rs7534770 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1561.000000,3447.000000, 0.311701,0.688299, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4867751 4867752 rs12091444 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 622 chr1 4867849 4867850 rs12410445 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop 622 chr1 4870015 4870016 rs12090401 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop,genotype-conflict 622 chr1 4878870 4878871 rs1120120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 733.000000,4275.000000, 0.146366,0.853634, maf-5-some-pop 622 chr1 4881266 4881267 rs12122126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2977.000000,2031.000000, 0.594449,0.405551, maf-5-some-pop,maf-5-all-pops 622 chr1 4881399 4881400 rs10915617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop 622 chr1 4882038 4882039 rs12117810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1824.000000,3184.000000, 0.364217,0.635783, maf-5-some-pop 622 chr1 4882655 4882656 rs1883345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,genotype-conflict 622 chr1 4883094 4883095 rs1883347 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3496.000000,1512.000000, 0.698083,0.301917, maf-5-some-pop,maf-5-all-pops 622 chr1 4887386 4887387 rs12063965 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 622 chr1 4888722 4888723 rs12028621 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop 622 chr1 4889603 4889604 rs10799265 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 622 chr1 4889911 4889912 rs12028290 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 622 chr1 4891602 4891603 rs2025379 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2874.000000,2134.000000,2134.000000,2874.000000, 0.286941,0.213059,0.213059,0.286941, maf-5-some-pop,maf-5-all-pops 622 chr1 4894143 4894144 rs12742986 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop,genotype-conflict 622 chr1 4896239 4896240 rs12127053 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop,genotype-conflict 622 chr1 4896260 4896261 rs12072038 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 622 chr1 4897566 4897567 rs12118185 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 622 chr1 4897643 4897644 rs11576972 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 10.000000,1085.000000,3913.000000, 0.001997,0.216653,0.781350, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4901141 4901142 rs12124406 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2006.000000,3002.000000, 0.400559,0.599441, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4901736 4901737 rs7527319 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3508.000000,1500.000000, 0.700479,0.299521, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4906357 4906358 rs11805663 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3534.000000,1474.000000, 0.705671,0.294329, maf-5-some-pop,maf-5-all-pops 622 chr1 4907702 4907703 rs11582327 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, maf-5-some-pop,maf-5-all-pops 622 chr1 4909706 4909707 rs11582936 0 + A A A/C genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2946.000000,2062.000000, 0.588259,0.411741, maf-5-some-pop,maf-5-all-pops 622 chr1 4910370 4910371 rs12034948 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4911171 4911172 rs6693945 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2222.000000,2786.000000, 0.443690,0.556310, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4912725 4912726 rs7549868 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4912882 4912883 rs7552804 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4914909 4914910 rs6426440 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3569.000000,1439.000000, 0.712660,0.287340, maf-5-some-pop,maf-5-all-pops 622 chr1 4916604 4916605 rs1535736 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2698.000000,2310.000000,2310.000000,2698.000000, 0.269369,0.230631,0.230631,0.269369, maf-5-some-pop,maf-5-all-pops 622 chr1 4916905 4916906 rs1535734 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2268.000000,2740.000000,2740.000000,2268.000000, 0.226438,0.273562,0.273562,0.226438, maf-5-some-pop,maf-5-all-pops 622 chr1 4928867 4928868 rs12567053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop,genotype-conflict 622 chr1 4930180 4930181 rs1886112 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1796.000000,3212.000000,3212.000000,1796.000000, 0.179313,0.320687,0.320687,0.179313, maf-5-some-pop,maf-5-all-pops 622 chr1 4933153 4933154 rs12094945 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1251.000000,3757.000000, 0.249800,0.750200, maf-5-some-pop,maf-5-all-pops 622 chr1 4933234 4933235 rs10489136 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1007.000000,4001.000000, 0.201078,0.798922, maf-5-some-pop 622 chr1 4933494 4933495 rs10489137 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 622 chr1 4934066 4934067 rs10489138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 622 chr1 4943522 4943523 rs7548372 0 + C C A/C genomic single unknown 0 0 unknown exact 1 MixedObserved 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3019.000000,1989.000000, 0.602835,0.397165, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4945480 4945481 rs6658585 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 622 chr1 4951564 4951565 rs4654464 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop 622 chr1 4953527 4953528 rs16839786 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3691.000000,1317.000000, 0.737021,0.262979, maf-5-some-pop,maf-5-all-pops 622 chr1 4957127 4957128 rs16839792 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4958101 4958102 rs4654620 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3744.000000,1264.000000, 0.747604,0.252396, maf-5-some-pop 622 chr1 4958938 4958939 rs10915656 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop,maf-5-all-pops 622 chr1 4959785 4959786 rs2031246 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1535.000000,3473.000000,3473.000000,1535.000000, 0.153255,0.346745,0.346745,0.153255, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 622 chr1 4960910 4960911 rs1998542 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4109.000000,899.000000,899.000000,4109.000000, 0.410244,0.089756,0.089756,0.410244, maf-5-some-pop,maf-5-all-pops 622 chr1 4962568 4962569 rs4654622 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1658.000000,3350.000000, 0.331070,0.668930, maf-5-some-pop,maf-5-all-pops 622 chr1 4963636 4963637 rs7524606 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4964004 4964005 rs1980722 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 3791.000000,1217.000000,1217.000000,3791.000000, 0.378494,0.121506,0.121506,0.378494, maf-5-some-pop,genotype-conflict 622 chr1 4967738 4967739 rs7520488 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop,maf-5-all-pops 622 chr1 4967975 4967976 rs10753391 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3233.000000,1775.000000, 0.645567,0.354433, maf-5-some-pop,maf-5-all-pops 622 chr1 4970121 4970122 rs10915666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1779.000000,3229.000000, 0.355232,0.644768, maf-5-some-pop,genotype-conflict 622 chr1 4971216 4971217 rs2209159 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 1077.000000,3931.000000,3931.000000,1077.000000, 0.107528,0.392472,0.392472,0.107528, maf-5-some-pop 622 chr1 4971506 4971507 rs12034557 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4382.000000,626.000000, 0.875000,0.125000, maf-5-some-pop 622 chr1 4972185 4972186 rs41524347 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4323.000000,685.000000,685.000000,4323.000000, 0.431609,0.068391,0.068391,0.431609, maf-5-some-pop 622 chr1 4973106 4973107 rs11805753 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop,maf-5-all-pops 622 chr1 4973300 4973301 rs10915668 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2906.000000,2102.000000, 0.580272,0.419728, maf-5-some-pop,maf-5-all-pops 622 chr1 4975416 4975417 rs10915670 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop,microattr-tpa,genotype-conflict 622 chr1 4980691 4980692 rs12035499 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 757.000000,4251.000000, 0.151158,0.848842, maf-5-some-pop,maf-5-all-pops 623 chr1 4982385 4982386 rs6698453 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4983216 4983217 rs10915671 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 710.000000,4298.000000, 0.141773,0.858227, maf-5-some-pop 623 chr1 4983478 4983479 rs12043326 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 737.000000,4271.000000, 0.147165,0.852835, maf-5-some-pop,maf-5-all-pops 623 chr1 4983797 4983798 rs4141867 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2083.000000,2925.000000,2925.000000,2083.000000, 0.207967,0.292033,0.292033,0.207967, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4984371 4984372 rs1535733 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3994.000000,1014.000000,1014.000000,3994.000000, 0.398762,0.101238,0.101238,0.398762, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4984666 4984667 rs6666792 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 623 chr1 4984881 4984882 rs2093765 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2100.000000,2908.000000,2908.000000,2100.000000, 0.209665,0.290335,0.290335,0.209665, maf-5-some-pop,maf-5-all-pops 623 chr1 4984993 4984994 rs2411955 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 379.000000,4629.000000, 0.075679,0.924321, maf-5-some-pop 623 chr1 4985768 4985769 rs10915675 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop,maf-5-all-pops 623 chr1 4986305 4986306 rs1886110 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4463.000000,545.000000,545.000000,4463.000000, 0.445587,0.054413,0.054413,0.445587, maf-5-some-pop 623 chr1 4986434 4986435 rs4529681 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop,genotype-conflict 623 chr1 4986469 4986470 rs2411956 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 G,T, 4262.000000,746.000000, 0.851038,0.148962, maf-5-some-pop 623 chr1 4986507 4986508 rs4644459 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop,genotype-conflict 623 chr1 4987423 4987424 rs6666453 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1227.000000,3781.000000, 0.245008,0.754992, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4991217 4991218 rs10915677 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop,maf-5-all-pops 623 chr1 4994451 4994452 rs12409253 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 637.000000,4371.000000, 0.127196,0.872804, maf-5-some-pop 623 chr1 4995025 4995026 rs12049256 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2036.000000,2972.000000, 0.406550,0.593450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4996184 4996185 rs10915683 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2970.000000,2038.000000, 0.593051,0.406949, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4996274 4996275 rs12045266 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 3687.000000,1321.000000, 0.736222,0.263778, maf-5-some-pop,maf-5-all-pops 623 chr1 4996306 4996307 rs12048035 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,G, 3674.000000,1334.000000, 0.733626,0.266374, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4998384 4998385 rs9426468 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3083.000000,1925.000000, 0.615615,0.384385, maf-5-some-pop,maf-5-all-pops 623 chr1 5001646 5001647 rs16839877 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 623 chr1 5001808 5001809 rs17349719 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop 623 chr1 5002052 5002053 rs12042532 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5002169 5002170 rs12041887 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop 623 chr1 5002366 5002367 rs7555212 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2091.000000,2917.000000, 0.417532,0.582468, maf-5-some-pop,genotype-conflict 623 chr1 5002625 5002626 rs6426368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2502.000000,2506.000000, 0.499601,0.500399, maf-5-some-pop,maf-5-all-pops 623 chr1 5002712 5002713 rs6669905 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5003146 5003147 rs6678838 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3212.000000,1796.000000, 0.641374,0.358626, maf-5-some-pop,maf-5-all-pops 623 chr1 5003664 5003665 rs6426370 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop 623 chr1 5005479 5005480 rs7531490 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5005774 5005775 rs7534281 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3080.000000,1928.000000, 0.615016,0.384984, maf-5-some-pop,maf-5-all-pops 623 chr1 5007234 5007235 rs10915296 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2188.000000,2820.000000, 0.436901,0.563099, maf-5-some-pop,maf-5-all-pops 623 chr1 5010141 5010142 rs10915297 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1611.000000,3397.000000, 0.321685,0.678315, maf-5-some-pop,maf-5-all-pops 623 chr1 5010987 5010988 rs6664358 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,maf-5-all-pops 623 chr1 5011289 5011290 rs12403612 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 623 chr1 5011309 5011310 rs12411011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop 623 chr1 5012037 5012038 rs7522655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1466.000000,3542.000000, 0.292732,0.707268, maf-5-some-pop,maf-5-all-pops 623 chr1 5012100 5012101 rs7544541 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2037.000000,2971.000000, 0.406749,0.593251, maf-5-some-pop,maf-5-all-pops 623 chr1 5012300 5012301 rs10915298 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 635.000000,4373.000000, 0.126797,0.873203, maf-5-some-pop 623 chr1 5012354 5012355 rs12410485 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop,genotype-conflict 623 chr1 5015466 5015467 rs6693486 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1458.000000,3550.000000, 0.291134,0.708866, maf-5-some-pop,maf-5-all-pops 623 chr1 5017651 5017652 rs12029491 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop 623 chr1 5018077 5018078 rs12404173 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 623 chr1 5021199 5021200 rs10799145 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2345.000000,2663.000000, 0.468251,0.531749, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5022766 5022767 rs12119864 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 379.000000,4629.000000, 0.075679,0.924321, maf-5-some-pop 623 chr1 5022943 5022944 rs7554632 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 623 chr1 5023429 5023430 rs6702660 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 898.000000,4110.000000, 0.179313,0.820687, maf-5-some-pop,genotype-conflict 623 chr1 5023598 5023599 rs12741441 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3928.000000,1080.000000, 0.784345,0.215655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5025138 5025139 rs3101220 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop 623 chr1 5030659 5030660 rs7525837 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,genotype-conflict 623 chr1 5031378 5031379 rs10799149 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop 623 chr1 5031560 5031561 rs7518523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3179.000000,1829.000000, 0.634784,0.365216, maf-5-some-pop,maf-5-all-pops 623 chr1 5035187 5035188 rs10915303 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop 623 chr1 5037811 5037812 rs6666330 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3154.000000,1854.000000, 0.629792,0.370208, maf-5-some-pop,maf-5-all-pops 623 chr1 5038050 5038051 rs12739724 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 769.000000,4239.000000, 0.153554,0.846446, maf-5-some-pop 623 chr1 5039092 5039093 rs6657381 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3904.000000,1104.000000, 0.779553,0.220447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5039379 5039380 rs1841241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3630.000000,1378.000000, 0.724840,0.275160, maf-5-some-pop,maf-5-all-pops 623 chr1 5042265 5042266 rs2334268 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 171.000000,4837.000000,4837.000000,171.000000, 0.017073,0.482927,0.482927,0.017073, maf-5-some-pop,genotype-conflict 623 chr1 5047037 5047038 rs6679312 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 623 chr1 5048623 5048624 rs7541612 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 623 chr1 5048714 5048715 rs9426492 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop,maf-5-all-pops 623 chr1 5048933 5048934 rs10737392 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop 623 chr1 5051231 5051232 rs12725971 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3719.000000,1289.000000, 0.742612,0.257388, maf-5-some-pop 623 chr1 5051304 5051305 rs7367766 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1884.000000,3124.000000, 0.376198,0.623802, maf-5-some-pop,maf-5-all-pops 623 chr1 5051632 5051633 rs10799150 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop,maf-5-all-pops 623 chr1 5051709 5051710 rs6683624 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop,genotype-conflict 623 chr1 5053100 5053101 rs1459753 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 A,G, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,genotype-conflict 623 chr1 5055186 5055187 rs1117325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 4963.000000,45.000000, 0.991014,0.008986, maf-5-some-pop 623 chr1 5055603 5055604 rs1459754 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,maf-5-all-pops 623 chr1 5061518 5061519 rs10158288 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3009.000000,1999.000000, 0.600839,0.399161, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5062187 5062188 rs11808607 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 623 chr1 5063292 5063293 rs10915307 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1374.000000,3634.000000, 0.274361,0.725639, maf-5-some-pop,maf-5-all-pops 623 chr1 5064204 5064205 rs10737393 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2968.000000,2040.000000, 0.592652,0.407348, maf-5-some-pop,maf-5-all-pops 623 chr1 5065588 5065589 rs10915308 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2574.000000,2434.000000, 0.513978,0.486022, maf-5-some-pop,maf-5-all-pops 623 chr1 5065849 5065850 rs10915309 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2543.000000,2465.000000, 0.507788,0.492212, maf-5-some-pop,maf-5-all-pops 623 chr1 5068209 5068210 rs10915310 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3241.000000,1767.000000, 0.647165,0.352835, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5068244 5068245 rs10799151 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3167.000000,1841.000000, 0.632388,0.367612, maf-5-some-pop,maf-5-all-pops 623 chr1 5073091 5073092 rs9286975 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop,maf-5-all-pops 623 chr1 5073154 5073155 rs9662653 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops 623 chr1 5076321 5076322 rs10915314 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop 623 chr1 5077551 5077552 rs12047764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1292.000000,3716.000000, 0.257987,0.742013, maf-5-some-pop,maf-5-all-pops 623 chr1 5078938 5078939 rs10915316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 623 chr1 5080432 5080433 rs6689504 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop,maf-5-all-pops 623 chr1 5081065 5081066 rs10915317 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1048.000000,3960.000000, 0.209265,0.790735, maf-5-some-pop 623 chr1 5088616 5088617 rs2169089 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1071.000000,3937.000000,3937.000000,1071.000000, 0.106929,0.393071,0.393071,0.106929, maf-5-some-pop 623 chr1 5088993 5088994 rs720318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,genotype-conflict 623 chr1 5090714 5090715 rs1459764 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3898.000000,1110.000000,1110.000000,3898.000000, 0.389177,0.110823,0.110823,0.389177, maf-5-some-pop,genotype-conflict 623 chr1 5093740 5093741 rs1563793 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 623 chr1 5094702 5094703 rs1459763 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3579.000000,1429.000000,1429.000000,3579.000000, 0.357328,0.142672,0.142672,0.357328, maf-5-some-pop 623 chr1 5097353 5097354 rs10915322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 848.000000,4160.000000, 0.169329,0.830671, maf-5-some-pop,maf-5-all-pops 623 chr1 5097534 5097535 rs7538599 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop 623 chr1 5102143 5102144 rs12403444 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 624 chr1 5112056 5112057 rs12759849 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 3 A,C,G, 134.000000,887.000000,3987.000000, 0.026757,0.177117,0.796126, maf-5-some-pop,maf-5-all-pops 624 chr1 5114552 5114553 rs3128685 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 624 chr1 5121062 5121063 rs970119 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1613.000000,3395.000000,3395.000000,1613.000000, 0.161042,0.338958,0.338958,0.161042, maf-5-some-pop 624 chr1 5122609 5122610 rs1380472 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4170.000000,838.000000,838.000000,4170.000000, 0.416334,0.083666,0.083666,0.416334, maf-5-some-pop,maf-5-all-pops 624 chr1 5127542 5127543 rs6603832 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1989.000000,3019.000000, 0.397165,0.602835, maf-5-some-pop,maf-5-all-pops 624 chr1 5134630 5134631 rs1599169 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,EVA-GONL,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 176.000000,4832.000000,4832.000000,176.000000, 0.017572,0.482428,0.482428,0.017572, maf-5-some-pop,microattr-tpa,genotype-conflict 624 chr1 5137665 5137666 rs10915336 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5140225 5140226 rs11590026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 830.000000,4178.000000, 0.165735,0.834265, maf-5-some-pop 624 chr1 5141292 5141293 rs3128687 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2270.000000,2738.000000, 0.453275,0.546725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5141639 5141640 rs3128689 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3866.000000,1142.000000, 0.771965,0.228035, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5142980 5142981 rs1841240 0 - A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 624 chr1 5143243 5143244 rs10799159 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2829.000000,2179.000000, 0.564896,0.435104, maf-5-some-pop,maf-5-all-pops 624 chr1 5145065 5145066 rs6680801 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop,genotype-conflict 624 chr1 5145462 5145463 rs12120144 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop,maf-5-all-pops 624 chr1 5146070 5146071 rs10915342 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop 624 chr1 5148684 5148685 rs10915343 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2512.000000,2496.000000, 0.501597,0.498403, maf-5-some-pop,maf-5-all-pops 624 chr1 5150459 5150460 rs12723011 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop,genotype-conflict 624 chr1 5151475 5151476 rs2199215 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2504.000000,2504.000000,2504.000000,2504.000000, 0.250000,0.250000,0.250000,0.250000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5152158 5152159 rs12121092 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3550.000000,1458.000000, 0.708866,0.291134, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5156244 5156245 rs3101225 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4480.000000,528.000000,528.000000,4480.000000, 0.447284,0.052716,0.052716,0.447284, maf-5-some-pop 624 chr1 5157177 5157178 rs12405346 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop 624 chr1 5160730 5160731 rs1459766 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1038.000000,3970.000000,3970.000000,1038.000000, 0.103634,0.396366,0.396366,0.103634, maf-5-some-pop,genotype-conflict 624 chr1 5170641 5170642 rs7513500 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 624 chr1 5170711 5170712 rs7513590 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,maf-5-all-pops,microattr-tpa 624 chr1 5173803 5173804 rs2611423 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4155.000000,853.000000, 0.829673,0.170327, maf-5-some-pop 624 chr1 5179805 5179806 rs6701939 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4256.000000,752.000000, 0.849840,0.150160, maf-5-some-pop,genotype-conflict 624 chr1 5183811 5183812 rs4949166 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1012.000000,3996.000000,3996.000000,1012.000000, 0.101038,0.398962,0.398962,0.101038, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5183924 5183925 rs4356099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 624 chr1 5188953 5188954 rs12756944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop 624 chr1 5192702 5192703 rs6671889 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 2556.000000,2452.000000, 0.510383,0.489617, maf-5-some-pop,maf-5-all-pops 624 chr1 5192748 5192749 rs4949165 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5193025 5193026 rs10492923 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop,microattr-tpa,genotype-conflict 624 chr1 5193115 5193116 rs10492924 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop 624 chr1 5193672 5193673 rs9439505 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3614.000000,1394.000000, 0.721645,0.278355, maf-5-some-pop,maf-5-all-pops 624 chr1 5194220 5194221 rs16840024 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 624 chr1 5195166 5195167 rs10737397 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1060.000000,3948.000000, 0.211661,0.788339, maf-5-some-pop 624 chr1 5195250 5195251 rs12409689 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop,genotype-conflict 624 chr1 5195316 5195317 rs12122020 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5195370 5195371 rs10492925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 624 chr1 5195381 5195382 rs12045223 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop 624 chr1 5197950 5197951 rs10799172 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop 624 chr1 5197976 5197977 rs10799173 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,genotype-conflict 624 chr1 5198788 5198789 rs16840051 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3405.000000,1603.000000, 0.679912,0.320088, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5200508 5200509 rs6681148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 624 chr1 5200731 5200732 rs6681359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,genotype-conflict 624 chr1 5200874 5200875 rs12401618 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop 624 chr1 5206444 5206445 rs9439509 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop 624 chr1 5206638 5206639 rs4345839 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1026.000000,3982.000000, 0.204872,0.795128, maf-5-some-pop,genotype-conflict 624 chr1 5209243 5209244 rs12025231 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop 624 chr1 5210123 5210124 rs12121369 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop,maf-5-all-pops 624 chr1 5211133 5211134 rs10753353 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop 624 chr1 5211337 5211338 rs12027352 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3232.000000,1776.000000, 0.645367,0.354633, maf-5-some-pop,maf-5-all-pops 624 chr1 5214522 5214523 rs7517431 0 + C C C/G genomic single unknown 0 0 unknown exact 1 MixedObserved 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops 624 chr1 5215735 5215736 rs9439538 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop 624 chr1 5222074 5222075 rs6668830 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop,maf-5-all-pops 624 chr1 5222144 5222145 rs12059743 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5222595 5222596 rs10915365 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2367.000000,2641.000000, 0.472644,0.527356, maf-5-some-pop 624 chr1 5223181 5223182 rs12026730 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop 624 chr1 5226751 5226752 rs6675995 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4181.000000,827.000000, 0.834864,0.165136, maf-5-some-pop 624 chr1 5229408 5229409 rs11583683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops 624 chr1 5229464 5229465 rs16840076 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 624 chr1 5230745 5230746 rs4076635 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1696.000000,3312.000000, 0.338658,0.661342, maf-5-some-pop,genotype-conflict 624 chr1 5231891 5231892 rs4394703 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop 624 chr1 5234334 5234335 rs7545119 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop 625 chr1 5245817 5245818 rs12038986 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 914.000000,4094.000000, 0.182508,0.817492, maf-5-some-pop 625 chr1 5246625 5246626 rs17366838 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4274.000000,734.000000, 0.853435,0.146565, maf-5-some-pop,maf-5-all-pops 625 chr1 5247081 5247082 rs10492930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3677.000000,1331.000000, 0.734225,0.265775, maf-5-some-pop 625 chr1 5247354 5247355 rs10492931 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop 625 chr1 5250496 5250497 rs10915375 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop,maf-5-all-pops 625 chr1 5250904 5250905 rs9439543 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4230.000000,778.000000, 0.844649,0.155351, maf-5-some-pop 625 chr1 5253435 5253436 rs12041491 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 996.000000,4012.000000, 0.198882,0.801118, maf-5-some-pop 625 chr1 5253531 5253532 rs12083008 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 783.000000,4225.000000, 0.156350,0.843650, maf-5-some-pop,genotype-conflict 625 chr1 5253544 5253545 rs10492932 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop 625 chr1 5253663 5253664 rs7536712 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3398.000000,1610.000000, 0.678514,0.321486, maf-5-some-pop 625 chr1 5253917 5253918 rs10492933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 625 chr1 5256773 5256774 rs1320179 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2076.000000,2932.000000, 0.414537,0.585463, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5258555 5258556 rs2722782 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,genotype-conflict 625 chr1 5259063 5259064 rs16840160 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,C, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,genotype-conflict 625 chr1 5260706 5260707 rs17375672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop 625 chr1 5260756 5260757 rs12136793 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 808.000000,4200.000000, 0.161342,0.838658, maf-5-some-pop,genotype-conflict 625 chr1 5264516 5264517 rs2722787 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop 625 chr1 5264696 5264697 rs12043987 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4502.000000,506.000000, 0.898962,0.101038, maf-5-some-pop,genotype-conflict 625 chr1 5270276 5270277 rs12140099 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3537.000000,1471.000000, 0.706270,0.293730, maf-5-some-pop,maf-5-all-pops 625 chr1 5278634 5278635 rs7533885 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3560.000000,1448.000000, 0.710863,0.289137, maf-5-some-pop,maf-5-all-pops 625 chr1 5281674 5281675 rs7511635 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3460.000000,1548.000000, 0.690895,0.309105, maf-5-some-pop,maf-5-all-pops 625 chr1 5288558 5288559 rs35457436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop 625 chr1 5293364 5293365 rs12031466 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop 625 chr1 5295775 5295776 rs4847562 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4468.000000,540.000000,540.000000,4468.000000, 0.446086,0.053914,0.053914,0.446086, maf-5-some-pop,genotype-conflict 625 chr1 5297844 5297845 rs473104 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2230.000000,2778.000000,2778.000000,2230.000000, 0.222644,0.277356,0.277356,0.222644, maf-5-some-pop,maf-5-all-pops 625 chr1 5297886 5297887 rs586165 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1486.000000,3522.000000,3522.000000,1486.000000, 0.148363,0.351637,0.351637,0.148363, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5302168 5302169 rs534188 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3105.000000,1903.000000,1903.000000,3105.000000, 0.310004,0.189996,0.189996,0.310004, maf-5-some-pop,maf-5-all-pops 625 chr1 5302314 5302315 rs12125575 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1054.000000,3954.000000, 0.210463,0.789537, maf-5-some-pop 625 chr1 5303370 5303371 rs480807 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3100.000000,1908.000000,1908.000000,3100.000000, 0.309505,0.190495,0.190495,0.309505, maf-5-some-pop,maf-5-all-pops 625 chr1 5303445 5303446 rs6687834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop 625 chr1 5307765 5307766 rs6704207 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2679.000000,2329.000000, 0.534944,0.465056, maf-5-some-pop,maf-5-all-pops 625 chr1 5308256 5308257 rs571977 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2679.000000,2329.000000, 0.534944,0.465056, maf-5-some-pop,maf-5-all-pops 625 chr1 5309254 5309255 rs7534404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1575.000000,3433.000000, 0.314497,0.685503, maf-5-some-pop,maf-5-all-pops 625 chr1 5309666 5309667 rs12135834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3583.000000,1425.000000, 0.715455,0.284545, maf-5-some-pop,genotype-conflict 625 chr1 5309896 5309897 rs12128282 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1540.000000,3468.000000, 0.307508,0.692492, maf-5-some-pop,maf-5-all-pops 625 chr1 5310579 5310580 rs10915396 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1738.000000,3270.000000, 0.347045,0.652955, maf-5-some-pop,maf-5-all-pops 625 chr1 5310608 5310609 rs6686714 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop 625 chr1 5315320 5315321 rs16840287 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop 625 chr1 5315480 5315481 rs16840289 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1082.000000,3926.000000, 0.216054,0.783946, maf-5-some-pop 625 chr1 5318070 5318071 rs4847582 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 625 chr1 5318181 5318182 rs4847581 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 625 chr1 5318551 5318552 rs12089315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3850.000000,1158.000000, 0.768770,0.231230, maf-5-some-pop 625 chr1 5318782 5318783 rs2945618 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 17 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3473.000000,1535.000000, 0.693490,0.306510, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5321138 5321139 rs630153 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1551.000000,3457.000000, 0.309704,0.690296, maf-5-some-pop,maf-5-all-pops 625 chr1 5322217 5322218 rs972257 0 - T T A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 625 chr1 5323428 5323429 rs17456252 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1151.000000,3857.000000, 0.229832,0.770168, maf-5-some-pop,maf-5-all-pops 625 chr1 5323588 5323589 rs7528370 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop 625 chr1 5324230 5324231 rs499416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2493.000000,2515.000000, 0.497804,0.502196, maf-5-some-pop,maf-5-all-pops 625 chr1 5325723 5325724 rs12139398 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4258.000000,750.000000, 0.850240,0.149760, maf-5-some-pop 625 chr1 5325923 5325924 rs648378 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2406.000000,2602.000000, 0.480431,0.519569, maf-5-some-pop,maf-5-all-pops 625 chr1 5326049 5326050 rs536995 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3232.000000,1776.000000, 0.645367,0.354633, maf-5-some-pop,maf-5-all-pops 625 chr1 5326333 5326334 rs646542 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1819.000000,3189.000000,3189.000000,1819.000000, 0.181609,0.318391,0.318391,0.181609, maf-5-some-pop,maf-5-all-pops 625 chr1 5330238 5330239 rs493993 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 625 chr1 5330285 5330286 rs494138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2910.000000,2098.000000, 0.581070,0.418930, maf-5-some-pop,maf-5-all-pops 625 chr1 5330414 5330415 rs495765 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3919.000000,1089.000000, 0.782548,0.217452, maf-5-some-pop,maf-5-all-pops 625 chr1 5332364 5332365 rs4847579 0 - A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 625 chr1 5332816 5332817 rs10799189 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop 625 chr1 5333478 5333479 rs598031 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3715.000000,1293.000000,1293.000000,3715.000000, 0.370907,0.129093,0.129093,0.370907, maf-5-some-pop 625 chr1 5334078 5334079 rs584938 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3906.000000,1102.000000,1102.000000,3906.000000, 0.389976,0.110024,0.110024,0.389976, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5334413 5334414 rs583170 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1879.000000,3129.000000,3129.000000,1879.000000, 0.187600,0.312400,0.312400,0.187600, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5334935 5334936 rs12729227 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 625 chr1 5337097 5337098 rs573318 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2775.000000,2233.000000, 0.554113,0.445887, maf-5-some-pop,maf-5-all-pops 625 chr1 5337491 5337492 rs613882 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2623.000000,2385.000000, 0.523762,0.476238, maf-5-some-pop,maf-5-all-pops 625 chr1 5337744 5337745 rs615185 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1295.000000,3713.000000, 0.258586,0.741414, maf-5-some-pop 625 chr1 5338211 5338212 rs17457350 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3723.000000,1285.000000, 0.743411,0.256589, maf-5-some-pop,genotype-conflict 625 chr1 5341113 5341114 rs17423513 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 625 chr1 5341231 5341232 rs10492935 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop,genotype-conflict 625 chr1 5341463 5341464 rs17423547 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1025.000000,3983.000000, 0.204673,0.795327, maf-5-some-pop,genotype-conflict 625 chr1 5343827 5343828 rs10915404 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,genotype-conflict 625 chr1 5346473 5346474 rs557477 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops 625 chr1 5346799 5346800 rs560335 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop,maf-5-all-pops 625 chr1 5347438 5347439 rs565941 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2214.000000,2794.000000, 0.442093,0.557907, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5352491 5352492 rs7530063 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 625 chr1 5352547 5352548 rs7516132 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 625 chr1 5353008 5353009 rs4287614 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop 625 chr1 5357170 5357171 rs9439550 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2726.000000,2282.000000, 0.544329,0.455671, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5358737 5358738 rs7518506 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop 625 chr1 5359497 5359498 rs11579529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 625 chr1 5362291 5362292 rs9439551 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3086.000000,1922.000000, 0.616214,0.383786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5362344 5362345 rs11579000 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 625 chr1 5364633 5364634 rs9439519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1827.000000,3181.000000, 0.364816,0.635184, maf-5-some-pop,maf-5-all-pops 625 chr1 5368588 5368589 rs9439521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5368746 5368747 rs9439522 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2743.000000,2265.000000, 0.547724,0.452276, maf-5-some-pop,maf-5-all-pops 625 chr1 5368768 5368769 rs9439523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2265.000000,2743.000000, 0.452276,0.547724, maf-5-some-pop,maf-5-all-pops 625 chr1 5369176 5369177 rs9439525 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2741.000000,2267.000000, 0.547324,0.452676, maf-5-some-pop,maf-5-all-pops 625 chr1 5369797 5369798 rs9439527 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 625 chr1 5371578 5371579 rs10915413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2295.000000,2713.000000, 0.458267,0.541733, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5371933 5371934 rs4478820 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2283.000000,2725.000000, 0.455871,0.544129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5372500 5372501 rs16840503 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop 625 chr1 5373365 5373366 rs10915414 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 504.000000,4504.000000, 0.100639,0.899361, maf-5-some-pop 626 chr1 5374052 5374053 rs9439563 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2645.000000,2363.000000, 0.528155,0.471845, maf-5-some-pop,maf-5-all-pops 626 chr1 5383442 5383443 rs6662148 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop 626 chr1 5384327 5384328 rs4847565 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 2600.000000,2408.000000,2408.000000,2600.000000, 0.259585,0.240415,0.240415,0.259585, maf-5-some-pop,maf-5-all-pops 626 chr1 5386596 5386597 rs874995 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2420.000000,2588.000000, 0.483227,0.516773, maf-5-some-pop,maf-5-all-pops 626 chr1 5390185 5390186 rs9439530 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3526.000000,1482.000000, 0.704073,0.295927, maf-5-some-pop,maf-5-all-pops 626 chr1 5390208 5390209 rs16840538 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop 626 chr1 5390277 5390278 rs4847564 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2597.000000,2411.000000,2411.000000,2597.000000, 0.259285,0.240715,0.240715,0.259285, maf-5-some-pop,maf-5-all-pops 626 chr1 5390577 5390578 rs11576342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,genotype-conflict 626 chr1 5392079 5392080 rs12085538 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 626 chr1 5402869 5402870 rs10799197 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop,maf-5-all-pops 626 chr1 5403584 5403585 rs1326005 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 995.000000,4013.000000,4013.000000,995.000000, 0.099341,0.400659,0.400659,0.099341, maf-5-some-pop,genotype-conflict 626 chr1 5408888 5408889 rs11587319 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop,genotype-conflict 626 chr1 5410348 5410349 rs7552583 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop 626 chr1 5410541 5410542 rs4129058 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2820.000000,2188.000000,2188.000000,2820.000000, 0.281550,0.218450,0.218450,0.281550, maf-5-some-pop 626 chr1 5411432 5411433 rs12410822 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops 626 chr1 5421532 5421533 rs7364349 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop 626 chr1 5421603 5421604 rs7512133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 626 chr1 5424666 5424667 rs11583534 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 626 chr1 5425108 5425109 rs11583605 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 626 chr1 5463936 5463937 rs11801490 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3230.000000,1778.000000, 0.644968,0.355032, maf-5-some-pop,maf-5-all-pops 626 chr1 5467078 5467079 rs11582304 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 485.000000,4523.000000, 0.096845,0.903155, maf-5-some-pop 626 chr1 5467214 5467215 rs11582323 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 405.000000,4603.000000, 0.080871,0.919129, maf-5-some-pop 626 chr1 5471516 5471517 rs7418357 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 626 chr1 5475258 5475259 rs11587457 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1098.000000,3910.000000, 0.219249,0.780751, maf-5-some-pop,maf-5-all-pops 626 chr1 5475331 5475332 rs6603834 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,G, 745.000000,26.000000,4237.000000, 0.148762,0.005192,0.846046, maf-5-some-pop 626 chr1 5475500 5475501 rs11260639 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 626 chr1 5475580 5475581 rs11576458 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,genotype-conflict 626 chr1 5475597 5475598 rs11576460 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops,genotype-conflict 626 chr1 5475662 5475663 rs6603835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2855.000000,2153.000000, 0.570088,0.429912, maf-5-some-pop,maf-5-all-pops 626 chr1 5478586 5478587 rs11260646 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3246.000000,1762.000000, 0.648163,0.351837, maf-5-some-pop,maf-5-all-pops 626 chr1 5478900 5478901 rs6688540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2121.000000,2887.000000, 0.423522,0.576478, maf-5-some-pop,maf-5-all-pops 626 chr1 5480100 5480101 rs6603839 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2044.000000,2964.000000, 0.408147,0.591853, maf-5-some-pop,maf-5-all-pops 626 chr1 5480259 5480260 rs2355 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 2 C,T, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop 626 chr1 5491500 5491501 rs7415936 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2154.000000,2854.000000, 0.430112,0.569888, maf-5-some-pop 626 chr1 5492042 5492043 rs10907211 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1442.000000,3566.000000, 0.287939,0.712061, maf-5-some-pop,maf-5-all-pops 626 chr1 5493391 5493392 rs12724170 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2010.000000,2998.000000, 0.401358,0.598642, maf-5-some-pop,maf-5-all-pops 626 chr1 5502721 5502722 rs6689364 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 627 chr1 5520870 5520871 rs7538250 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 627 chr1 5532100 5532101 rs12566922 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop 627 chr1 5540322 5540323 rs17028061 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop 627 chr1 5542668 5542669 rs10796404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1438.000000,3570.000000, 0.287141,0.712859, maf-5-some-pop,maf-5-all-pops 627 chr1 5544658 5544659 rs9787315 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5544822 5544823 rs12046983 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 627 chr1 5545278 5545279 rs17028069 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4161.000000,847.000000, 0.830871,0.169129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5549117 5549118 rs12030717 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3952.000000,1056.000000, 0.789137,0.210863, maf-5-some-pop,maf-5-all-pops 627 chr1 5549444 5549445 rs12126301 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop 627 chr1 5551232 5551233 rs12120052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop,maf-5-all-pops 627 chr1 5555418 5555419 rs2071956 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2320.000000,2688.000000, 0.463259,0.536741, maf-5-some-pop,maf-5-all-pops 627 chr1 5555528 5555529 rs2071957 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4139.000000,869.000000, 0.826478,0.173522, maf-5-some-pop 627 chr1 5555683 5555684 rs2071958 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4157.000000,851.000000, 0.830072,0.169928, maf-5-some-pop 627 chr1 5559248 5559249 rs10796408 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3660.000000,1348.000000, 0.730831,0.269169, maf-5-some-pop,genotype-conflict 627 chr1 5561562 5561563 rs17028122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop,maf-5-all-pops 627 chr1 5562107 5562108 rs17028129 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop 627 chr1 5562368 5562369 rs17028133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2359.000000,2649.000000, 0.471046,0.528954, maf-5-some-pop,maf-5-all-pops 627 chr1 5562810 5562811 rs12023966 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 627 chr1 5563418 5563419 rs17028141 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 627 chr1 5563586 5563587 rs12123786 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop,genotype-conflict 627 chr1 5569490 5569491 rs12128558 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop,maf-5-all-pops 627 chr1 5570863 5570864 rs2213779 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,G, 4964.000000,44.000000, 0.991214,0.008786, maf-5-some-pop 627 chr1 5571049 5571050 rs2213780 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,TSC-CSHL, 2 A,G, 3255.000000,1753.000000, 0.649960,0.350040, maf-5-some-pop 627 chr1 5571355 5571356 rs9730430 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop,genotype-conflict 627 chr1 5571858 5571859 rs12033085 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 627 chr1 5572036 5572037 rs1540325 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop 627 chr1 5572075 5572076 rs10796398 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1098.000000,3910.000000, 0.219249,0.780751, maf-5-some-pop,maf-5-all-pops 627 chr1 5572303 5572304 rs9729649 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1613.000000,3395.000000, 0.322085,0.677915, maf-5-some-pop,maf-5-all-pops 627 chr1 5582557 5582558 rs13376005 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,genotype-conflict 627 chr1 5582773 5582774 rs17028184 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 627 chr1 5584013 5584014 rs1967969 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 627 chr1 5585214 5585215 rs2008457 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 489.000000,4519.000000, 0.097644,0.902356, maf-5-some-pop 627 chr1 5585858 5585859 rs11260636 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,genotype-conflict 627 chr1 5592798 5592799 rs9787199 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4052.000000,956.000000, 0.809105,0.190895, maf-5-some-pop,maf-5-all-pops 627 chr1 5594736 5594737 rs2153900 0 + A A A/G genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 806.000000,4202.000000, 0.160942,0.839058, maf-5-some-pop 627 chr1 5596137 5596138 rs9439610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 801.000000,4207.000000, 0.159944,0.840056, maf-5-some-pop,maf-5-all-pops 627 chr1 5596695 5596696 rs11260640 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop 627 chr1 5597229 5597230 rs1009976 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4438.000000,570.000000, 0.886182,0.113818, maf-5-some-pop 627 chr1 5597754 5597755 rs1418630 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop,genotype-conflict 627 chr1 5601058 5601059 rs11799600 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 627 chr1 5601947 5601948 rs1578717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop 627 chr1 5603849 5603850 rs7515958 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5604015 5604016 rs1935759 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2104.000000,2904.000000, 0.420128,0.579872, maf-5-some-pop,maf-5-all-pops 627 chr1 5611256 5611257 rs11801138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop 627 chr1 5611728 5611729 rs2211417 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 512.000000,4496.000000,4496.000000,512.000000, 0.051118,0.448882,0.448882,0.051118, maf-5-some-pop 627 chr1 5612955 5612956 rs1418632 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3045.000000,1963.000000, 0.608027,0.391973, maf-5-some-pop,maf-5-all-pops 627 chr1 5614730 5614731 rs12062988 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 627 chr1 5615930 5615931 rs17028213 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4977.000000,31.000000, 0.993810,0.006190, 627 chr1 5618539 5618540 rs12069164 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop,genotype-conflict 627 chr1 5623619 5623620 rs17028235 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,genotype-conflict 627 chr1 5625565 5625566 rs6673119 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 627 chr1 5625928 5625929 rs7523214 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 627 chr1 5626093 5626094 rs9439614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3771.000000,1237.000000, 0.752995,0.247005, maf-5-some-pop,maf-5-all-pops 627 chr1 5627911 5627912 rs4845835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2017.000000,2991.000000, 0.402756,0.597244, maf-5-some-pop,maf-5-all-pops 627 chr1 5628913 5628914 rs10127971 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop 627 chr1 5631544 5631545 rs4845837 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2927.000000,2081.000000, 0.584465,0.415535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5634720 5634721 rs17027022 0 + A A A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 627 chr1 5634850 5634851 rs10796403 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2109.000000,2899.000000, 0.421126,0.578874, maf-5-some-pop,maf-5-all-pops 627 chr1 5635289 5635290 rs11260648 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 627 chr1 5635315 5635316 rs7522344 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2909.000000,2099.000000, 0.580871,0.419129, maf-5-some-pop,maf-5-all-pops 627 chr1 5635385 5635386 rs11260649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 628 chr1 5636340 5636341 rs937486 0 - G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 40.000000,4968.000000,4968.000000,40.000000, 0.003994,0.496006,0.496006,0.003994, maf-5-some-pop,genotype-conflict 628 chr1 5636357 5636358 rs12072467 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 628 chr1 5636731 5636732 rs1775403 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3250.000000,1758.000000, 0.648962,0.351038, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5636817 5636818 rs1775404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1811.000000,3197.000000, 0.361621,0.638379, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5636829 5636830 rs1775405 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 628 chr1 5637078 5637079 rs2226156 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 628 chr1 5637197 5637198 rs17027039 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop 628 chr1 5638672 5638673 rs12080410 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3618.000000,1390.000000, 0.722444,0.277556, maf-5-some-pop,maf-5-all-pops 628 chr1 5641581 5641582 rs1775421 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 376.000000,4632.000000,4632.000000,376.000000, 0.037540,0.462460,0.462460,0.037540, maf-5-some-pop,genotype-conflict 628 chr1 5641918 5641919 rs1775420 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4603.000000,405.000000,405.000000,4603.000000, 0.459565,0.040435,0.040435,0.459565, maf-5-some-pop 628 chr1 5642510 5642511 rs1818038 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 628 chr1 5643157 5643158 rs12078796 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop 628 chr1 5643757 5643758 rs1695645 0 + C C C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1499.000000,3509.000000, 0.299321,0.700679, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5645428 5645429 rs4845803 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2799.000000,2209.000000, 0.558906,0.441094, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5645442 5645443 rs4845804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1986.000000,3022.000000, 0.396565,0.603435, maf-5-some-pop,maf-5-all-pops 628 chr1 5645711 5645712 rs4845805 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2340.000000,2668.000000, 0.467252,0.532748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5645775 5645776 rs1499404 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,C, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,genotype-conflict 628 chr1 5646001 5646002 rs10907200 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2667.000000,2341.000000, 0.532548,0.467452, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5646201 5646202 rs12036552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2072.000000,2936.000000, 0.413738,0.586262, maf-5-some-pop,maf-5-all-pops 628 chr1 5646263 5646264 rs1775416 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2327.000000,2681.000000,2681.000000,2327.000000, 0.232328,0.267672,0.267672,0.232328, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5646356 5646357 rs12407564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4276.000000,732.000000, 0.853834,0.146166, maf-5-some-pop,genotype-conflict 628 chr1 5646983 5646984 rs7538946 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2961.000000,2047.000000, 0.591254,0.408746, maf-5-some-pop,maf-5-all-pops 628 chr1 5649622 5649623 rs12087709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 628 chr1 5658266 5658267 rs10907201 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 628 chr1 5658760 5658761 rs12090011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 628 chr1 5659651 5659652 rs11811237 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 628 chr1 5670465 5670466 rs709187 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 628 chr1 5670626 5670627 rs12116874 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 577.000000,4431.000000, 0.115216,0.884784, maf-5-some-pop 628 chr1 5671492 5671493 rs11260661 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 628 chr1 5671756 5671757 rs707583 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,genotype-conflict 628 chr1 5674433 5674434 rs770718 0 + T T C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop 628 chr1 5676652 5676653 rs17459914 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 572.000000,4436.000000, 0.114217,0.885783, maf-5-some-pop 628 chr1 5677111 5677112 rs35152314 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP, 2 A,C, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 628 chr1 5679440 5679441 rs9439603 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3490.000000,1518.000000, 0.696885,0.303115, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5680230 5680231 rs10157794 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,maf-5-all-pops 628 chr1 5680571 5680572 rs10157819 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4285.000000,723.000000, 0.855631,0.144369, maf-5-some-pop,maf-5-all-pops 628 chr1 5681227 5681228 rs1695621 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1088.000000,3920.000000, 0.217252,0.782748, maf-5-some-pop 628 chr1 5683506 5683507 rs12143743 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop,genotype-conflict 628 chr1 5683696 5683697 rs17426290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 628 chr1 5683760 5683761 rs945323 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3709.000000,1299.000000,1299.000000,3709.000000, 0.370308,0.129692,0.129692,0.370308, maf-5-some-pop 628 chr1 5684439 5684440 rs945321 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1085.000000,3923.000000,3923.000000,1085.000000, 0.108327,0.391673,0.391673,0.108327, maf-5-some-pop 628 chr1 5684737 5684738 rs1695624 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5684787 5684788 rs12145625 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops 628 chr1 5686018 5686019 rs9439607 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 515.000000,4493.000000, 0.102835,0.897165, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5686131 5686132 rs1775401 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop 628 chr1 5689609 5689610 rs770682 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1862.000000,3146.000000,3146.000000,1862.000000, 0.185903,0.314097,0.314097,0.185903, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5689920 5689921 rs17028416 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 628 chr1 5690135 5690136 rs6663290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3835.000000,1173.000000, 0.765775,0.234225, maf-5-some-pop 628 chr1 5692155 5692156 rs4845808 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4155.000000,853.000000, 0.829673,0.170327, maf-5-some-pop,maf-5-all-pops 628 chr1 5699474 5699475 rs10492947 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 874.000000,4134.000000, 0.174521,0.825479, maf-5-some-pop,maf-5-all-pops 628 chr1 5699633 5699634 rs11260666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 745.000000,4263.000000, 0.148762,0.851238, maf-5-some-pop 628 chr1 5700006 5700007 rs10465907 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop,maf-5-all-pops 628 chr1 5706437 5706438 rs12078062 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2023.000000,2985.000000, 0.403954,0.596046, maf-5-some-pop,maf-5-all-pops 628 chr1 5706559 5706560 rs17467353 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 628 chr1 5706596 5706597 rs17427125 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 628 chr1 5707161 5707162 rs971814 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2806.000000,2202.000000,2202.000000,2806.000000, 0.280152,0.219848,0.219848,0.280152, maf-5-some-pop,maf-5-all-pops 628 chr1 5707223 5707224 rs1499396 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4929.000000,79.000000,79.000000,4929.000000, 0.492113,0.007887,0.007887,0.492113, maf-5-some-pop 628 chr1 5707462 5707463 rs6675989 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 628 chr1 5707498 5707499 rs12036857 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3970.000000,1038.000000, 0.792732,0.207268, maf-5-some-pop 628 chr1 5707514 5707515 rs6690488 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 628 chr1 5707937 5707938 rs1499395 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2817.000000,2191.000000,2191.000000,2817.000000, 0.281250,0.218750,0.218750,0.281250, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5710442 5710443 rs707586 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 628 chr1 5717137 5717138 rs1775408 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP, 2 A,G, 3153.000000,1855.000000, 0.629593,0.370407, maf-5-some-pop,maf-5-all-pops 628 chr1 5717551 5717552 rs1763319 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2002.000000,3006.000000, 0.399760,0.600240, maf-5-some-pop,maf-5-all-pops 628 chr1 5718015 5718016 rs1695629 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3032.000000,1976.000000,1976.000000,3032.000000, 0.302716,0.197284,0.197284,0.302716, maf-5-some-pop,maf-5-all-pops 628 chr1 5718366 5718367 rs17028547 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,genotype-conflict 628 chr1 5718413 5718414 rs1763322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SNP500CANCER,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1870.000000,3138.000000, 0.373403,0.626597, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5718573 5718574 rs1695628 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1887.000000,3121.000000,3121.000000,1887.000000, 0.188399,0.311601,0.311601,0.188399, maf-5-some-pop,maf-5-all-pops 628 chr1 5720153 5720154 rs7554423 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 628 chr1 5723375 5723376 rs973978 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1547.000000,3461.000000,3461.000000,1547.000000, 0.154453,0.345547,0.345547,0.154453, maf-5-some-pop 628 chr1 5723562 5723563 rs12038069 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 628 chr1 5723642 5723643 rs12038771 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 628 chr1 5724659 5724660 rs17028587 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,genotype-conflict 628 chr1 5724939 5724940 rs707580 0 - T T A/G genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2676.000000,2332.000000,2332.000000,2676.000000, 0.267173,0.232827,0.232827,0.267173, maf-5-some-pop,maf-5-all-pops 628 chr1 5731557 5731558 rs17427900 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,KRIBB_YJKIM,PERLEGEN, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 628 chr1 5732426 5732427 rs7544423 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,WI_SSAHASNP, 2 A,G, 4512.000000,496.000000, 0.900958,0.099041, maf-5-some-pop 628 chr1 5734012 5734013 rs1081454 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,KWOK,PJP,SC_JCM, 4 A,C,G,T, 3625.000000,1383.000000,1383.000000,3625.000000, 0.361921,0.138079,0.138079,0.361921, maf-5-some-pop,maf-5-all-pops 628 chr1 5736681 5736682 rs707593 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3132.000000,1876.000000,1876.000000,3132.000000, 0.312700,0.187300,0.187300,0.312700, maf-5-some-pop,genotype-conflict 628 chr1 5738499 5738500 rs10492948 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,genotype-conflict 628 chr1 5739588 5739589 rs12096787 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop 628 chr1 5739637 5739638 rs811284 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2292.000000,2716.000000, 0.457668,0.542332, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5743508 5743509 rs770701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 628 chr1 5744962 5744963 rs10492949 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4311.000000,697.000000, 0.860823,0.139177, maf-5-some-pop 628 chr1 5747183 5747184 rs770705 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 628 chr1 5747372 5747373 rs770706 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1910.000000,3098.000000,3098.000000,1910.000000, 0.190695,0.309305,0.309305,0.190695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5747487 5747488 rs770707 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2896.000000,2112.000000,2112.000000,2896.000000, 0.289137,0.210863,0.210863,0.289137, maf-5-some-pop,maf-5-all-pops 628 chr1 5748610 5748611 rs1278832 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop,maf-5-all-pops 628 chr1 5748791 5748792 rs709189 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3044.000000,1964.000000, 0.607827,0.392173, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5749082 5749083 rs709188 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1913.000000,3095.000000, 0.381989,0.618011, maf-5-some-pop,maf-5-all-pops 628 chr1 5750012 5750013 rs2649069 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3133.000000,1875.000000, 0.625599,0.374401, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5750581 5750582 rs770710 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,genotype-conflict 628 chr1 5751019 5751020 rs770711 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1689.000000,3319.000000,3319.000000,1689.000000, 0.168630,0.331370,0.331370,0.168630, maf-5-some-pop 628 chr1 5752339 5752340 rs811285 0 - C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 628 chr1 5759490 5759491 rs41321444 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 206.000000,4802.000000,4802.000000,206.000000, 0.020567,0.479433,0.479433,0.020567, maf-5-some-pop 628 chr1 5764878 5764879 rs796396 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5765352 5765353 rs770693 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3415.000000,1593.000000,1593.000000,3415.000000, 0.340954,0.159046,0.159046,0.340954, maf-5-some-pop,genotype-conflict 628 chr1 5766278 5766279 rs17028692 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 629 chr1 5767804 5767805 rs2649078 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 629 chr1 5770264 5770265 rs873982 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2745.000000,2263.000000,2263.000000,2745.000000, 0.274062,0.225938,0.225938,0.274062, maf-5-some-pop,maf-5-all-pops,genotype-conflict 629 chr1 5772990 5772991 rs770698 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop,maf-5-all-pops 629 chr1 5773941 5773942 rs12072588 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 629 chr1 5774673 5774674 rs1414379 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3157.000000,1851.000000, 0.630391,0.369609, maf-5-some-pop,maf-5-all-pops,genotype-conflict 629 chr1 5774875 5774876 rs1414380 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1882.000000,3126.000000, 0.375799,0.624201, maf-5-some-pop,maf-5-all-pops 629 chr1 5778235 5778236 rs2649092 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1597.000000,3411.000000,3411.000000,1597.000000, 0.159445,0.340555,0.340555,0.159445, maf-5-some-pop,maf-5-all-pops 629 chr1 5778788 5778789 rs9725810 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 629 chr1 5782720 5782721 rs10907212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1179.000000,3829.000000, 0.235423,0.764577, maf-5-some-pop,genotype-conflict 629 chr1 5782768 5782769 rs2649086 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1622.000000,3386.000000,3386.000000,1622.000000, 0.161941,0.338059,0.338059,0.161941, maf-5-some-pop,maf-5-all-pops 629 chr1 5785134 5785135 rs1875037 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1644.000000,3364.000000,3364.000000,1644.000000, 0.164137,0.335863,0.335863,0.164137, maf-5-some-pop,maf-5-all-pops 629 chr1 5790497 5790498 rs2842258 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3767.000000,1241.000000,1241.000000,3767.000000, 0.376098,0.123902,0.123902,0.376098, maf-5-some-pop 629 chr1 5790654 5790655 rs2842257 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2804.000000,2204.000000,2204.000000,2804.000000, 0.279952,0.220048,0.220048,0.279952, maf-5-some-pop 629 chr1 5792552 5792553 rs12734259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 629 chr1 5803619 5803620 rs2842244 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2708.000000,2300.000000,2300.000000,2708.000000, 0.270367,0.229633,0.229633,0.270367, maf-5-some-pop,maf-5-all-pops 629 chr1 5805604 5805605 rs11260682 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 718.000000,4290.000000, 0.143371,0.856629, maf-5-some-pop 629 chr1 5806348 5806349 rs924378 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,genotype-conflict 629 chr1 5811542 5811543 rs17028725 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop 629 chr1 5813297 5813298 rs17028728 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,genotype-conflict 629 chr1 5813723 5813724 rs12061902 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1002.000000,4006.000000, 0.200080,0.799920, maf-5-some-pop 629 chr1 5813883 5813884 rs12095646 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 817.000000,4191.000000, 0.163139,0.836861, maf-5-some-pop,genotype-conflict 629 chr1 5814134 5814135 rs17429690 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 629 chr1 5814153 5814154 rs12060804 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop,genotype-conflict 629 chr1 5814897 5814898 rs11260689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop 629 chr1 5815247 5815248 rs12060268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop,genotype-conflict 629 chr1 5817184 5817185 rs12059056 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 629 chr1 5817264 5817265 rs17028749 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop,genotype-conflict 629 chr1 5817473 5817474 rs17028753 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 629 chr1 5819553 5819554 rs12062185 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 629 chr1 5830247 5830248 rs4072521 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2992.000000,2016.000000, 0.597444,0.402556, maf-5-some-pop,maf-5-all-pops 629 chr1 5830814 5830815 rs4412595 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2048.000000,2960.000000, 0.408946,0.591054, maf-5-some-pop,maf-5-all-pops 629 chr1 5830966 5830967 rs3935073 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3158.000000,1850.000000,1850.000000,3158.000000, 0.315296,0.184704,0.184704,0.315296, maf-5-some-pop,maf-5-all-pops,genotype-conflict 629 chr1 5831117 5831118 rs4276922 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 629 chr1 5835064 5835065 rs11804517 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 629 chr1 5861104 5861105 rs4845818 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1211.000000,3797.000000, 0.241813,0.758187, maf-5-some-pop 629 chr1 5879131 5879132 rs9661613 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4056.000000,952.000000, 0.809904,0.190096, maf-5-some-pop 629 chr1 5879771 5879772 rs9725925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,genotype-conflict 629 chr1 5880465 5880466 rs9308476 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop 629 chr1 5880908 5880909 rs4845820 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2030.000000,2978.000000, 0.405351,0.594649, maf-5-some-pop 629 chr1 5897006 5897007 rs4623725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop,maf-5-all-pops 630 chr1 5898322 5898323 rs11121170 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2020.000000,2988.000000, 0.403355,0.596645, maf-5-some-pop,maf-5-all-pops 630 chr1 5898728 5898729 rs2485655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 955.000000,4053.000000, 0.190695,0.809305, maf-5-some-pop 630 chr1 5901287 5901288 rs1698973 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 767.000000,4241.000000,4241.000000,767.000000, 0.076577,0.423423,0.423423,0.076577, maf-5-some-pop 630 chr1 5902049 5902050 rs4845824 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3316.000000,1692.000000, 0.662141,0.337859, maf-5-some-pop,maf-5-all-pops 630 chr1 5902085 5902086 rs11579676 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3978.000000,1030.000000, 0.794329,0.205671, maf-5-some-pop,maf-5-all-pops 630 chr1 5902313 5902314 rs11590626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop 630 chr1 5902426 5902427 rs9729215 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop 630 chr1 5902760 5902761 rs489834 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop,genotype-conflict 630 chr1 5902849 5902850 rs17028814 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,genotype-conflict 630 chr1 5903957 5903958 rs1698980 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 816.000000,4192.000000,4192.000000,816.000000, 0.081470,0.418530,0.418530,0.081470, maf-5-some-pop 630 chr1 5904717 5904718 rs1624858 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,maf-5-all-pops 630 chr1 5904743 5904744 rs4845825 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 630 chr1 5905928 5905929 rs1765719 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3583.000000,1425.000000,1425.000000,3583.000000, 0.357728,0.142272,0.142272,0.357728, maf-5-some-pop,maf-5-all-pops 630 chr1 5906336 5906337 rs506776 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop 630 chr1 5906417 5906418 rs472189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop 630 chr1 5908732 5908733 rs1287616 0 + C C C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1772.000000,3236.000000, 0.353834,0.646166, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5909638 5909639 rs17471243 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop 630 chr1 5910573 5910574 rs1287617 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop 630 chr1 5913620 5913621 rs548726 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop,maf-5-all-pops,microattr-tpa 630 chr1 5913892 5913893 rs522049 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 630 chr1 5916457 5916458 rs12095710 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 630 chr1 5919524 5919525 rs12122008 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 630 chr1 5921041 5921042 rs11121600 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5921555 5921556 rs12121542 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,C, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 630 chr1 5921584 5921585 rs11121605 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop,genotype-conflict 630 chr1 5922077 5922078 rs11121608 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5922833 5922834 rs12133533 0 + C C A/C genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 484.000000,4524.000000, 0.096645,0.903355, maf-5-some-pop 630 chr1 5923787 5923788 rs11121648 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2517.000000,2491.000000, 0.502596,0.497404, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5925800 5925801 rs489933 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1952.000000,3056.000000,3056.000000,1952.000000, 0.194888,0.305112,0.305112,0.194888, maf-5-some-pop,maf-5-all-pops 630 chr1 5925954 5925955 rs12737596 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 C,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop 630 chr1 5934235 5934236 rs868162 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1409.000000,3599.000000,3599.000000,1409.000000, 0.140675,0.359325,0.359325,0.140675, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5934489 5934490 rs868163 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2157.000000,2851.000000,2851.000000,2157.000000, 0.215355,0.284645,0.284645,0.215355, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5934499 5934500 rs905467 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3650.000000,1358.000000,1358.000000,3650.000000, 0.364417,0.135583,0.135583,0.364417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5942746 5942747 rs12079601 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1904.000000,3104.000000, 0.380192,0.619808, maf-5-some-pop,maf-5-all-pops 630 chr1 5944137 5944138 rs4908559 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop,genotype-conflict 630 chr1 5946442 5946443 rs12735231 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop,maf-5-all-pops 630 chr1 5946949 5946950 rs10746504 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4195.000000,813.000000, 0.837660,0.162340, maf-5-some-pop,genotype-conflict 630 chr1 5948676 5948677 rs2282281 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 4176.000000,832.000000,832.000000,4176.000000, 0.416933,0.083067,0.083067,0.416933, maf-5-some-pop 630 chr1 5949017 5949018 rs11122098 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 431.000000,4577.000000, 0.086062,0.913938, maf-5-some-pop,genotype-conflict 630 chr1 5957341 5957342 rs12139627 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,genotype-conflict 630 chr1 5957588 5957589 rs7519953 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop,maf-5-all-pops 630 chr1 5957724 5957725 rs12728066 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop 630 chr1 5960502 5960503 rs2312464 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2373.000000,2635.000000,2635.000000,2373.000000, 0.236921,0.263079,0.263079,0.236921, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5961651 5961652 rs11122116 0 + G G A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSIP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 630 chr1 5961680 5961681 rs11122117 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,genotype-conflict 630 chr1 5961869 5961870 rs2134551 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4147.000000,861.000000,861.000000,4147.000000, 0.414038,0.085962,0.085962,0.414038, maf-5-some-pop 630 chr1 5965380 5965381 rs12120967 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 20 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop 630 chr1 5965823 5965824 rs12093500 0 + G G C/G genomic single unknown 0 0 ncRNA,missense exact 1 14 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,genotype-conflict 630 chr1 5966118 5966119 rs3747987 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 833.000000,4175.000000,4175.000000,833.000000, 0.083167,0.416833,0.416833,0.083167, maf-5-some-pop 630 chr1 5966660 5966661 rs11122130 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 630 chr1 5967063 5967064 rs9628990 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop 630 chr1 5967749 5967750 rs12123214 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop,genotype-conflict 630 chr1 5968048 5968049 rs17028879 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop,genotype-conflict 630 chr1 5971454 5971455 rs6694744 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop,genotype-conflict 630 chr1 5985071 5985072 rs1011994 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4301.000000,707.000000, 0.858826,0.141174, maf-5-some-pop,maf-5-all-pops 630 chr1 5986408 5986409 rs12142363 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop 630 chr1 5988925 5988926 rs11590436 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5989928 5989929 rs11120805 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 630 chr1 5989980 5989981 rs12121044 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4580.000000,428.000000, 0.914537,0.085463, maf-5-some-pop 630 chr1 5993858 5993859 rs11576617 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops 630 chr1 5995088 5995089 rs12098207 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 630 chr1 6002072 6002073 rs12033563 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 630 chr1 6002954 6002955 rs11120849 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 630 chr1 6006571 6006572 rs10492950 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,genotype-conflict 630 chr1 6009295 6009296 rs10864284 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1030.000000,3978.000000, 0.205671,0.794329, maf-5-some-pop,maf-5-all-pops 630 chr1 6011128 6011129 rs6702707 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 883.000000,4125.000000, 0.176318,0.823682, maf-5-some-pop,maf-5-all-pops 630 chr1 6011600 6011601 rs6659420 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop,maf-5-all-pops 631 chr1 6029936 6029937 rs12745395 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop,maf-5-all-pops 631 chr1 6031943 6031944 rs11588889 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3149.000000,1859.000000, 0.628794,0.371206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6033972 6033973 rs4908458 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 631 chr1 6034199 6034200 rs4068399 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3355.000000,1653.000000,1653.000000,3355.000000, 0.334964,0.165036,0.165036,0.334964, maf-5-some-pop,maf-5-all-pops 631 chr1 6037602 6037603 rs11120934 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, maf-5-some-pop,maf-5-all-pops 631 chr1 6038582 6038583 rs4908639 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop,genotype-conflict 631 chr1 6041367 6041368 rs2312049 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4442.000000,566.000000,566.000000,4442.000000, 0.443490,0.056510,0.056510,0.443490, maf-5-some-pop 631 chr1 6045021 6045022 rs812051 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 631 chr1 6049057 6049058 rs709207 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4054.000000,954.000000, 0.809505,0.190495, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6056167 6056168 rs1295101 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 2996.000000,2012.000000,2012.000000,2996.000000, 0.299121,0.200879,0.200879,0.299121, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6056728 6056729 rs7524578 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,genotype-conflict 631 chr1 6059228 6059229 rs1295100 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2799.000000,2209.000000,2209.000000,2799.000000, 0.279453,0.220547,0.220547,0.279453, maf-5-some-pop,maf-5-all-pops 631 chr1 6059321 6059322 rs7524865 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 631 chr1 6061647 6061648 rs481762 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2340.000000,2668.000000,2668.000000,2340.000000, 0.233626,0.266374,0.266374,0.233626, maf-5-some-pop,maf-5-all-pops 631 chr1 6067639 6067640 rs806114 0 - C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6079391 6079392 rs1295107 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2128.000000,2880.000000,2880.000000,2128.000000, 0.212460,0.287540,0.287540,0.212460, maf-5-some-pop,maf-5-all-pops 631 chr1 6079629 6079630 rs7539366 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2213.000000,2795.000000, 0.441893,0.558107, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6087846 6087847 rs17029061 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 631 chr1 6088008 6088009 rs10864321 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2204.000000,2804.000000, 0.440096,0.559904, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6088363 6088364 rs11121065 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6088670 6088671 rs1295103 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 368.000000,4640.000000,4640.000000,368.000000, 0.036741,0.463259,0.463259,0.036741, maf-5-some-pop,genotype-conflict 631 chr1 6089880 6089881 rs1295102 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KWOK,SC_SNP,TISHKOFF, 4 A,C,G,T, 246.000000,4762.000000,4762.000000,246.000000, 0.024561,0.475439,0.475439,0.024561, maf-5-some-pop,maf-5-all-pops 631 chr1 6100854 6100855 rs4908494 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 631 chr1 6101106 6101107 rs4908495 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 631 chr1 6102418 6102419 rs4908728 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop,genotype-conflict 631 chr1 6104001 6104002 rs3789563 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2019.000000,2989.000000,2989.000000,2019.000000, 0.201577,0.298423,0.298423,0.201577, maf-5-some-pop,maf-5-all-pops 631 chr1 6105108 6105109 rs3789559 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 743.000000,4265.000000,4265.000000,743.000000, 0.074181,0.425819,0.425819,0.074181, maf-5-some-pop 631 chr1 6110788 6110789 rs2010057 0 - A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 631 chr1 6112652 6112653 rs12047044 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 3104.000000,1904.000000, 0.619808,0.380192, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6117170 6117171 rs3789553 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3069.000000,1939.000000,1939.000000,3069.000000, 0.306410,0.193590,0.193590,0.306410, maf-5-some-pop,maf-5-all-pops 631 chr1 6125083 6125084 rs4908752 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3349.000000,1659.000000, 0.668730,0.331270, maf-5-some-pop,maf-5-all-pops 631 chr1 6125981 6125982 rs17029103 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 631 chr1 6128228 6128229 rs4908757 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3619.000000,1389.000000, 0.722644,0.277356, maf-5-some-pop,maf-5-all-pops 631 chr1 6129863 6129864 rs1883771 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4442.000000,566.000000,566.000000,4442.000000, 0.443490,0.056510,0.056510,0.443490, maf-5-some-pop,genotype-conflict 631 chr1 6137402 6137403 rs3789543 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1851.000000,3157.000000,3157.000000,1851.000000, 0.184804,0.315196,0.315196,0.184804, maf-5-some-pop,maf-5-all-pops 631 chr1 6139743 6139744 rs2871871 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 413.000000,4595.000000,4595.000000,413.000000, 0.041234,0.458766,0.458766,0.041234, maf-5-some-pop 631 chr1 6140139 6140140 rs11121187 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop 631 chr1 6141260 6141261 rs6701690 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 631 chr1 6141324 6141325 rs3789541 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 625.000000,4383.000000,4383.000000,625.000000, 0.062400,0.437600,0.437600,0.062400, maf-5-some-pop 631 chr1 6144913 6144914 rs3789531 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2326.000000,2682.000000,2682.000000,2326.000000, 0.232228,0.267772,0.267772,0.232228, maf-5-some-pop,maf-5-all-pops 631 chr1 6144964 6144965 rs7554078 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 631 chr1 6153405 6153406 rs3789530 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 485.000000,4523.000000,4523.000000,485.000000, 0.048423,0.451577,0.451577,0.048423, maf-5-some-pop 631 chr1 6153524 6153525 rs3789529 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2544.000000,2464.000000,2464.000000,2544.000000, 0.253994,0.246006,0.246006,0.253994, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6163064 6163065 rs12037962 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop 632 chr1 6163924 6163925 rs3810989 0 - C C A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3513.000000,1495.000000,1495.000000,3513.000000, 0.350739,0.149261,0.149261,0.350739, maf-5-some-pop,maf-5-all-pops 632 chr1 6177201 6177202 rs7531562 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop,maf-5-all-pops 632 chr1 6186563 6186564 rs2273036 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,GMI,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 172.000000,4836.000000,4836.000000,172.000000, 0.017173,0.482827,0.482827,0.017173, maf-5-some-pop 632 chr1 6191130 6191131 rs17029186 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop 632 chr1 6192864 6192865 rs11121295 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop,maf-5-all-pops 632 chr1 6195731 6195732 rs9435080 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2453.000000,2555.000000, 0.489816,0.510184, maf-5-some-pop,maf-5-all-pops 632 chr1 6198744 6198745 rs2785585 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1587.000000,3421.000000, 0.316893,0.683107, maf-5-some-pop,maf-5-all-pops 632 chr1 6199676 6199677 rs2485024 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 632 chr1 6204221 6204222 rs17489787 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4172.000000,836.000000, 0.833067,0.166933, maf-5-some-pop,maf-5-all-pops 632 chr1 6205986 6205987 rs12734251 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop,maf-5-all-pops 632 chr1 6207216 6207217 rs1883606 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2315.000000,2693.000000,2693.000000,2315.000000, 0.231130,0.268870,0.268870,0.231130, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6211963 6211964 rs10864393 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2563.000000,2445.000000, 0.511781,0.488219, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6217858 6217859 rs9434741 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6222500 6222501 rs731975 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3491.000000,1517.000000,1517.000000,3491.000000, 0.348542,0.151458,0.151458,0.348542, maf-5-some-pop,maf-5-all-pops 632 chr1 6222882 6222883 rs4908529 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3803.000000,1205.000000, 0.759385,0.240615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6243334 6243335 rs7542655 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,RSG_JCVI,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4412.000000,596.000000, 0.880990,0.119010, maf-5-some-pop 632 chr1 6259129 6259130 rs3827723 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3404.000000,1604.000000,1604.000000,3404.000000, 0.339856,0.160144,0.160144,0.339856, maf-5-some-pop,maf-5-all-pops 632 chr1 6261870 6261871 rs10864433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1388.000000,3620.000000, 0.277157,0.722843, maf-5-some-pop,maf-5-all-pops 632 chr1 6272812 6272813 rs2294711 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 653.000000,4355.000000,4355.000000,653.000000, 0.065196,0.434804,0.434804,0.065196, maf-5-some-pop 632 chr1 6276166 6276167 rs12071731 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop 632 chr1 6278413 6278414 rs709209 0 + A A A/G genomic single unknown 0 0 missense exact 1 33 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2819.000000,2189.000000, 0.562899,0.437101, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6281089 6281090 rs6689940 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 632 chr1 6281376 6281377 rs1064721 0 - C C A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 453.000000,4555.000000,4555.000000,453.000000, 0.045228,0.454772,0.454772,0.045228, maf-5-some-pop 632 chr1 6281666 6281667 rs14281 0 - A A G/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM_SSAHASNP,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3999.000000,1009.000000,1009.000000,3999.000000, 0.399261,0.100739,0.100739,0.399261, maf-5-some-pop,maf-5-all-pops 633 chr1 6291809 6291810 rs4908541 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 633 chr1 6314821 6314822 rs11590458 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3663.000000,1345.000000, 0.731430,0.268570, maf-5-some-pop,maf-5-all-pops 633 chr1 6316883 6316884 rs2057006 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 633 chr1 6317120 6317121 rs11811690 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop 633 chr1 6332668 6332669 rs846103 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 41.000000,4967.000000,4967.000000,41.000000, 0.004093,0.495907,0.495907,0.004093, maf-5-some-pop 633 chr1 6343824 6343825 rs10489535 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 633 chr1 6344152 6344153 rs6682058 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 705.000000,4303.000000, 0.140775,0.859225, maf-5-some-pop,genotype-conflict 633 chr1 6345817 6345818 rs12404358 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 633 chr1 6355064 6355065 rs35553413 0 + G G C/G genomic single unknown 0 0 intron exact 1 MixedObserved 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,G, 1066.000000,3942.000000, 0.212859,0.787141, maf-5-some-pop 633 chr1 6355357 6355358 rs7554077 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop 633 chr1 6360146 6360147 rs17361670 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 633 chr1 6374486 6374487 rs12087652 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3846.000000,1162.000000, 0.767971,0.232029, maf-5-some-pop 633 chr1 6375055 6375056 rs3789492 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 633 chr1 6391312 6391313 rs3789484 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3247.000000,1761.000000,1761.000000,3247.000000, 0.324181,0.175819,0.175819,0.324181, maf-5-some-pop,maf-5-all-pops 633 chr1 6395590 6395591 rs11801103 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop 633 chr1 6399779 6399780 rs6680950 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 633 chr1 6409978 6409979 rs17029376 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop 633 chr1 6414536 6414537 rs2010905 0 - A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 633 chr1 6415246 6415247 rs9662106 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop,genotype-conflict 633 chr1 6416103 6416104 rs3789470 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4498.000000,510.000000,510.000000,4498.000000, 0.449081,0.050919,0.050919,0.449081, maf-5-some-pop,genotype-conflict 633 chr1 6416330 6416331 rs3789466 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 481.000000,4527.000000,4527.000000,481.000000, 0.048023,0.451977,0.451977,0.048023, maf-5-some-pop 633 chr1 6416377 6416378 rs6688127 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop 634 chr1 6422758 6422759 rs6660500 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 634 chr1 6454593 6454594 rs6663299 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop 634 chr1 6456471 6456472 rs7524775 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,genotype-conflict 634 chr1 6463099 6463100 rs17029399 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop,maf-5-all-pops 634 chr1 6465053 6465054 rs17026985 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop 634 chr1 6475685 6475686 rs11364 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1444.000000,3564.000000,3564.000000,1444.000000, 0.144169,0.355831,0.355831,0.144169, maf-5-some-pop,maf-5-all-pops 634 chr1 6501795 6501796 rs10864548 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1557.000000,3451.000000, 0.310903,0.689097, maf-5-some-pop,maf-5-all-pops,genotype-conflict 634 chr1 6505670 6505671 rs11121879 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop 634 chr1 6513907 6513908 rs2986737 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop 634 chr1 6529822 6529823 rs3007420 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop,genotype-conflict 634 chr1 6530188 6530189 rs3007421 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop,microattr-tpa,genotype-conflict 634 chr1 6542329 6542330 rs1002966 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3957.000000,1051.000000,1051.000000,3957.000000, 0.395068,0.104932,0.104932,0.395068, maf-5-some-pop 634 chr1 6547669 6547670 rs2986738 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1454.000000,3554.000000, 0.290335,0.709665, maf-5-some-pop,maf-5-all-pops 634 chr1 6548055 6548056 rs2986739 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop,maf-5-all-pops 634 chr1 6552498 6552499 rs9434795 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1790.000000,3218.000000, 0.357428,0.642572, maf-5-some-pop,maf-5-all-pops,genotype-conflict 635 chr1 6567248 6567249 rs4908553 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2193.000000,2815.000000, 0.437899,0.562101, maf-5-some-pop,maf-5-all-pops 635 chr1 6568949 6568950 rs4908901 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2232.000000,2776.000000, 0.445687,0.554313, maf-5-some-pop,maf-5-all-pops,genotype-conflict 635 chr1 6569285 6569286 rs11121985 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2263.000000,2745.000000, 0.451877,0.548123, maf-5-some-pop,maf-5-all-pops 635 chr1 6572078 6572079 rs4243828 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 635 chr1 6572331 6572332 rs4509598 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 50.000000,4958.000000, 0.009984,0.990016, 635 chr1 6579459 6579460 rs1010583 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,TSC-CSHL, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 635 chr1 6580249 6580250 rs4908904 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1324.000000,3684.000000, 0.264377,0.735623, maf-5-some-pop 635 chr1 6581282 6581283 rs12410405 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3826.000000,1182.000000, 0.763978,0.236022, maf-5-some-pop 635 chr1 6581876 6581877 rs7540913 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop 635 chr1 6585538 6585539 rs1064835 0 - C C A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3670.000000,1338.000000,1338.000000,3670.000000, 0.366414,0.133586,0.133586,0.366414, maf-5-some-pop 635 chr1 6586069 6586070 rs7548042 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 635 chr1 6590132 6590133 rs11122082 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop,maf-5-all-pops 635 chr1 6591936 6591937 rs932112 0 + T T A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 3 A,C,T, 2.000000,3903.000000,1103.000000, 0.000399,0.779353,0.220248, maf-5-some-pop,maf-5-all-pops 635 chr1 6592799 6592800 rs17029613 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 19.000000,4989.000000, 0.003794,0.996206, 635 chr1 6593531 6593532 rs11122083 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 732.000000,4276.000000, 0.146166,0.853834, maf-5-some-pop,maf-5-all-pops 635 chr1 6602945 6602946 rs2412310 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 99.000000,4909.000000,4909.000000,99.000000, 0.009884,0.490116,0.490116,0.009884, maf-5-some-pop 635 chr1 6606607 6606608 rs6679649 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop,maf-5-all-pops 635 chr1 6607198 6607199 rs10746502 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3851.000000,1157.000000, 0.768970,0.231030, maf-5-some-pop,maf-5-all-pops 635 chr1 6613189 6613190 rs6577582 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,genotype-conflict 635 chr1 6615106 6615107 rs4908925 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop 635 chr1 6641757 6641758 rs11811658 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop 635 chr1 6644722 6644723 rs731024 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1440.000000,3568.000000, 0.287540,0.712460, maf-5-some-pop,genotype-conflict 635 chr1 6645866 6645867 rs6682920 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1752.000000,3256.000000, 0.349840,0.650160, maf-5-some-pop,maf-5-all-pops,genotype-conflict 635 chr1 6649276 6649277 rs17029628 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 635 chr1 6651092 6651093 rs201171 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,SC_JCM,SI_EXO,SSMP,TSC-CSHL,YUSUKE, 4 A,C,G,T, 736.000000,4272.000000,4272.000000,736.000000, 0.073482,0.426518,0.426518,0.073482, maf-5-some-pop 635 chr1 6651727 6651728 rs1556036 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1255.000000,3753.000000,3753.000000,1255.000000, 0.125300,0.374700,0.374700,0.125300, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 635 chr1 6657354 6657355 rs4587589 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop 635 chr1 6659871 6659872 rs6678681 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1625.000000,3383.000000, 0.324481,0.675519, maf-5-some-pop,maf-5-all-pops 636 chr1 6690139 6690140 rs742394 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1583.000000,3425.000000,3425.000000,1583.000000, 0.158047,0.341953,0.341953,0.158047, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6705355 6705356 rs200457 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop,maf-5-all-pops 636 chr1 6705943 6705944 rs12137794 0 + C C C/T genomic single unknown 0 0 missense exact 1 15 1000GENOMES,AFFY,APPLERA_GI,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 636 chr1 6709609 6709610 rs7549198 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1695.000000,3313.000000, 0.338458,0.661542, maf-5-some-pop,maf-5-all-pops 636 chr1 6713113 6713114 rs2235564 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1626.000000,3382.000000,3382.000000,1626.000000, 0.162340,0.337660,0.337660,0.162340, maf-5-some-pop,maf-5-all-pops,microattr-tpa 636 chr1 6713281 6713282 rs200440 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2537.000000,2471.000000,2471.000000,2537.000000, 0.253295,0.246705,0.246705,0.253295, maf-5-some-pop,genotype-conflict 636 chr1 6721233 6721234 rs200451 0 - T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6724104 6724105 rs2235563 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3327.000000,1681.000000,1681.000000,3327.000000, 0.332169,0.167831,0.167831,0.332169, maf-5-some-pop,maf-5-all-pops 636 chr1 6742280 6742281 rs156985 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 810.000000,4198.000000,4198.000000,810.000000, 0.080871,0.419129,0.419129,0.080871, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6745443 6745444 rs200444 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop 636 chr1 6747896 6747897 rs277686 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6748128 6748129 rs156989 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2474.000000,2534.000000,2534.000000,2474.000000, 0.247005,0.252995,0.252995,0.247005, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6756433 6756434 rs3827729 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1567.000000,3441.000000,3441.000000,1567.000000, 0.156450,0.343550,0.343550,0.156450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6763136 6763137 rs278017 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2457.000000,2551.000000,2551.000000,2457.000000, 0.245308,0.254692,0.254692,0.245308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6766735 6766736 rs399242 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4225.000000,783.000000,783.000000,4225.000000, 0.421825,0.078175,0.078175,0.421825, maf-5-some-pop 636 chr1 6768855 6768856 rs11122119 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6771139 6771140 rs277670 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1372.000000,3636.000000,3636.000000,1372.000000, 0.136981,0.363019,0.363019,0.136981, maf-5-some-pop,maf-5-all-pops 636 chr1 6771568 6771569 rs277671 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 740.000000,4268.000000,4268.000000,740.000000, 0.073882,0.426118,0.426118,0.073882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6771606 6771607 rs277672 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2412.000000,2596.000000, 0.481629,0.518371, maf-5-some-pop,maf-5-all-pops 636 chr1 6784052 6784053 rs202577 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2538.000000,2470.000000,2470.000000,2538.000000, 0.253395,0.246605,0.246605,0.253395, maf-5-some-pop,maf-5-all-pops 636 chr1 6784591 6784592 rs277681 0 - A A G/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4256.000000,752.000000,752.000000,4256.000000, 0.424920,0.075080,0.075080,0.424920, maf-5-some-pop,maf-5-all-pops 636 chr1 6793239 6793240 rs441515 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 636 chr1 6798978 6798979 rs17029815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,genotype-conflict 636 chr1 6803491 6803492 rs12724107 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 G,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 636 chr1 6803746 6803747 rs12065191 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop,maf-5-all-pops 636 chr1 6808353 6808354 rs277675 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3517.000000,1491.000000,1491.000000,3517.000000, 0.351138,0.148862,0.148862,0.351138, maf-5-some-pop,maf-5-all-pops 636 chr1 6808676 6808677 rs11122129 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4368.000000,640.000000, 0.872204,0.127796, maf-5-some-pop,genotype-conflict 636 chr1 6810787 6810788 rs454782 0 - T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 637 chr1 6816688 6816689 rs12069069 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 637 chr1 6817342 6817343 rs17027008 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 640.000000,4368.000000, 0.127796,0.872204, maf-5-some-pop,genotype-conflict 637 chr1 6823922 6823923 rs422111 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1988.000000,3020.000000,3020.000000,1988.000000, 0.198482,0.301518,0.301518,0.198482, maf-5-some-pop,maf-5-all-pops 637 chr1 6826466 6826467 rs378930 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 A,G, 2186.000000,2822.000000, 0.436502,0.563498, maf-5-some-pop,maf-5-all-pops 637 chr1 6826570 6826571 rs406028 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3018.000000,1990.000000, 0.602636,0.397364, maf-5-some-pop,maf-5-all-pops 637 chr1 6826587 6826588 rs406619 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2053.000000,2955.000000,2955.000000,2053.000000, 0.204972,0.295028,0.295028,0.204972, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6829581 6829582 rs448886 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 4 A,C,G,T, 2051.000000,2957.000000,2957.000000,2051.000000, 0.204772,0.295228,0.295228,0.204772, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6831061 6831062 rs3861756 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 637 chr1 6834345 6834346 rs11122143 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop,maf-5-all-pops 637 chr1 6835760 6835761 rs11122144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 970.000000,4038.000000, 0.193690,0.806310, maf-5-some-pop,maf-5-all-pops 637 chr1 6843927 6843928 rs17029843 0 + A A A/C genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 637 chr1 6853354 6853355 rs1542899 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop 637 chr1 6863341 6863342 rs17029864 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1193.000000,3815.000000, 0.238219,0.761781, maf-5-some-pop,maf-5-all-pops 637 chr1 6867841 6867842 rs12735232 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop,maf-5-all-pops 637 chr1 6886648 6886649 rs811400 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2933.000000,2075.000000, 0.585663,0.414337, maf-5-some-pop,maf-5-all-pops 637 chr1 6896284 6896285 rs1396904 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3590.000000,1418.000000,1418.000000,3590.000000, 0.358427,0.141573,0.141573,0.358427, maf-5-some-pop,maf-5-all-pops 637 chr1 6898514 6898515 rs11578279 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 G,T, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop 637 chr1 6899862 6899863 rs12023462 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 637 chr1 6901017 6901018 rs4908425 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 810.000000,4198.000000, 0.161741,0.838259, maf-5-some-pop 637 chr1 6904878 6904879 rs4908570 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1958.000000,3050.000000, 0.390974,0.609026, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6921577 6921578 rs17441830 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop,genotype-conflict 637 chr1 6922491 6922492 rs11120779 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 637 chr1 6923725 6923726 rs1972306 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3103.000000,1905.000000,1905.000000,3103.000000, 0.309804,0.190196,0.190196,0.309804, maf-5-some-pop 637 chr1 6924586 6924587 rs12406288 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 431.000000,4577.000000, 0.086062,0.913938, maf-5-some-pop 637 chr1 6927025 6927026 rs17029963 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop,genotype-conflict 637 chr1 6927522 6927523 rs6657847 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, maf-5-some-pop,maf-5-all-pops 637 chr1 6927751 6927752 rs11120780 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1938.000000,3070.000000, 0.386981,0.613019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6937770 6937771 rs10492951 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4580.000000,428.000000, 0.914537,0.085463, maf-5-some-pop,genotype-conflict 637 chr1 6938688 6938689 rs17029988 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,genotype-conflict 637 chr1 6939527 6939528 rs6655933 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1082.000000,3926.000000, 0.216054,0.783946, maf-5-some-pop,maf-5-all-pops 637 chr1 6944803 6944804 rs950493 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3926.000000,1082.000000,1082.000000,3926.000000, 0.391973,0.108027,0.108027,0.391973, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6945529 6945530 rs10399866 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1062.000000,3946.000000, 0.212061,0.787939, maf-5-some-pop,maf-5-all-pops 638 chr1 6952325 6952326 rs12727063 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1078.000000,3930.000000, 0.215256,0.784744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 6955332 6955333 rs17030041 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop,genotype-conflict 638 chr1 6960926 6960927 rs4908426 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop 638 chr1 6967558 6967559 rs12132296 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 627.000000,4381.000000, 0.125200,0.874800, maf-5-some-pop 638 chr1 6968411 6968412 rs6577393 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 638 chr1 6972307 6972308 rs17495634 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 638 chr1 6976225 6976226 rs4908427 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,genotype-conflict 638 chr1 6976367 6976368 rs4908428 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 304.000000,4704.000000, 0.060703,0.939297, maf-5-some-pop 638 chr1 6977004 6977005 rs1892262 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2118.000000,2890.000000,2890.000000,2118.000000, 0.211462,0.288538,0.288538,0.211462, maf-5-some-pop 638 chr1 6987340 6987341 rs2898917 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 353.000000,4655.000000,4655.000000,353.000000, 0.035244,0.464756,0.464756,0.035244, maf-5-some-pop 638 chr1 6987404 6987405 rs2412219 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1927.000000,3081.000000,3081.000000,1927.000000, 0.192392,0.307608,0.307608,0.192392, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 6990490 6990491 rs41447147 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 4 A,C,G,T, 4857.000000,151.000000,151.000000,4857.000000, 0.484924,0.015076,0.015076,0.484924, maf-5-some-pop 638 chr1 6990862 6990863 rs7519035 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1967.000000,3041.000000, 0.392772,0.607228, maf-5-some-pop,maf-5-all-pops 638 chr1 6991924 6991925 rs6577395 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1786.000000,3222.000000, 0.356629,0.643371, maf-5-some-pop,maf-5-all-pops 638 chr1 7005343 7005344 rs4908575 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 7006543 7006544 rs12134815 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2660.000000,2348.000000, 0.531150,0.468850, maf-5-some-pop,maf-5-all-pops 638 chr1 7006697 7006698 rs7538627 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,maf-5-all-pops 638 chr1 7013640 7013641 rs10864252 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 638 chr1 7014539 7014540 rs12239076 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3676.000000,1332.000000, 0.734026,0.265974, maf-5-some-pop,maf-5-all-pops 638 chr1 7014638 7014639 rs10864255 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2405.000000,2603.000000, 0.480232,0.519768, maf-5-some-pop,maf-5-all-pops 638 chr1 7018718 7018719 rs11120797 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP, 2 A,G, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,genotype-conflict 638 chr1 7019815 7019816 rs1013248 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2762.000000,2246.000000, 0.551518,0.448482, maf-5-some-pop,maf-5-all-pops 638 chr1 7024221 7024222 rs11120799 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,genotype-conflict 638 chr1 7029261 7029262 rs17030082 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2777.000000,2231.000000, 0.554513,0.445487, maf-5-some-pop,maf-5-all-pops 638 chr1 7035829 7035830 rs6679134 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2354.000000,2654.000000, 0.470048,0.529952, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 7036801 7036802 rs4518923 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop 638 chr1 7040972 7040973 rs6701312 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2490.000000,2518.000000, 0.497204,0.502796, maf-5-some-pop,maf-5-all-pops 638 chr1 7041174 7041175 rs6698901 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2504.000000,2504.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 638 chr1 7054606 7054607 rs12128446 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 638 chr1 7055325 7055326 rs10128022 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1612.000000,3396.000000, 0.321885,0.678115, maf-5-some-pop,maf-5-all-pops 638 chr1 7059149 7059150 rs17030129 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 943.000000,4065.000000, 0.188299,0.811701, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 7061429 7061430 rs7525119 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop,maf-5-all-pops 638 chr1 7063386 7063387 rs2898915 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1936.000000,3072.000000,3072.000000,1936.000000, 0.193291,0.306709,0.306709,0.193291, maf-5-some-pop 638 chr1 7069807 7069808 rs12061141 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2901.000000,2107.000000, 0.579273,0.420727, maf-5-some-pop,maf-5-all-pops 638 chr1 7072549 7072550 rs6656639 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 584.000000,4424.000000, 0.116613,0.883387, maf-5-some-pop 638 chr1 7072725 7072726 rs7543531 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2939.000000,2069.000000, 0.586861,0.413139, maf-5-some-pop,maf-5-all-pops 638 chr1 7075497 7075498 rs6665293 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,genotype-conflict 639 chr1 7078363 7078364 rs7543753 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop 639 chr1 7078433 7078434 rs6690584 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 1768.000000,3240.000000, 0.353035,0.646965, maf-5-some-pop,maf-5-all-pops 639 chr1 7079256 7079257 rs6702309 0 + G G A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 3 A,G,T, 76.000000,4450.000000,482.000000, 0.015176,0.888578,0.096246, maf-5-some-pop,genotype-conflict 639 chr1 7079761 7079762 rs11809898 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop,genotype-conflict 639 chr1 7085509 7085510 rs11120818 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3803.000000,1205.000000, 0.759385,0.240615, maf-5-some-pop,maf-5-all-pops 639 chr1 7088260 7088261 rs11588846 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 639 chr1 7088451 7088452 rs4908586 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop 639 chr1 7088854 7088855 rs4243823 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2477.000000,2531.000000, 0.494609,0.505391, maf-5-some-pop,maf-5-all-pops 639 chr1 7089028 7089029 rs17030160 0 + A A A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 3 A,C,G, 4855.000000,74.000000,79.000000, 0.969449,0.014776,0.015775, maf-5-some-pop 639 chr1 7090698 7090699 rs3986512 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3662.000000,1346.000000,1346.000000,3662.000000, 0.365615,0.134385,0.134385,0.365615, maf-5-some-pop,maf-5-all-pops 639 chr1 7091585 7091586 rs12048981 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1685.000000,3323.000000, 0.336462,0.663538, maf-5-some-pop,maf-5-all-pops 639 chr1 7099265 7099266 rs7517585 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1574.000000,3434.000000, 0.314297,0.685703, maf-5-some-pop 639 chr1 7100291 7100292 rs6577408 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 639 chr1 7100464 7100465 rs7543003 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop 639 chr1 7102943 7102944 rs7524998 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, maf-5-some-pop,maf-5-all-pops 639 chr1 7105314 7105315 rs4074963 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 639 chr1 7107664 7107665 rs12025462 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3608.000000,1400.000000, 0.720447,0.279553, maf-5-some-pop,maf-5-all-pops 639 chr1 7107713 7107714 rs11580005 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 618.000000,4390.000000, 0.123403,0.876597, maf-5-some-pop 639 chr1 7108085 7108086 rs10746466 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3125.000000,1883.000000, 0.624002,0.375998, maf-5-some-pop,maf-5-all-pops 639 chr1 7113918 7113919 rs11120825 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,T, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,genotype-conflict 639 chr1 7114421 7114422 rs6690314 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1521.000000,3487.000000, 0.303714,0.696286, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7117541 7117542 rs7553100 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, maf-5-some-pop 639 chr1 7119488 7119489 rs10779671 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop,maf-5-all-pops 639 chr1 7125412 7125413 rs3923058 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 924.000000,4084.000000,4084.000000,924.000000, 0.092252,0.407748,0.407748,0.092252, maf-5-some-pop,maf-5-all-pops 639 chr1 7125581 7125582 rs4553221 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7127053 7127054 rs4908596 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1759.000000,3249.000000, 0.351238,0.648762, maf-5-some-pop,maf-5-all-pops 639 chr1 7128442 7128443 rs12354171 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 639 chr1 7141203 7141204 rs17030214 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,genotype-conflict 639 chr1 7141351 7141352 rs9434458 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2583.000000,2425.000000, 0.515775,0.484225, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7141812 7141813 rs11120837 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop 639 chr1 7144892 7144893 rs9434833 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop,maf-5-all-pops 639 chr1 7145416 7145417 rs7511741 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4348.000000,660.000000, 0.868211,0.131789, maf-5-some-pop 639 chr1 7146574 7146575 rs7515073 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1179.000000,3829.000000, 0.235423,0.764577, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7146808 7146809 rs9434834 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7148643 7148644 rs17345768 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4987.000000,21.000000, 0.995807,0.004193, 639 chr1 7149406 7149407 rs9434835 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3141.000000,1867.000000, 0.627196,0.372804, maf-5-some-pop 639 chr1 7150526 7150527 rs2071917 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 2998.000000,2010.000000, 0.598642,0.401358, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7150576 7150577 rs2071918 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7155814 7155815 rs10864279 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,maf-5-all-pops 639 chr1 7156081 7156082 rs11120840 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2005.000000,3003.000000, 0.400359,0.599641, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7156288 7156289 rs11580767 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4214.000000,794.000000, 0.841454,0.158546, maf-5-some-pop 639 chr1 7158560 7158561 rs4908440 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7160953 7160954 rs11120842 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,maf-5-all-pops 639 chr1 7162561 7162562 rs17030312 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 639 chr1 7162896 7162897 rs17030314 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 639 chr1 7164763 7164764 rs7528710 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop 639 chr1 7173894 7173895 rs7527268 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1663.000000,3345.000000, 0.332069,0.667931, maf-5-some-pop,maf-5-all-pops 639 chr1 7179478 7179479 rs7532024 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2904.000000,2104.000000, 0.579872,0.420128, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7179860 7179861 rs10779675 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3839.000000,1169.000000, 0.766573,0.233427, maf-5-some-pop,maf-5-all-pops 639 chr1 7180423 7180424 rs6656160 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop 639 chr1 7180588 7180589 rs17030341 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop 639 chr1 7190805 7190806 rs12032971 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop 639 chr1 7196658 7196659 rs4908600 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4090.000000,918.000000, 0.816693,0.183307, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7196878 7196879 rs12090163 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2619.000000,2389.000000, 0.522963,0.477037, maf-5-some-pop,maf-5-all-pops 639 chr1 7201067 7201068 rs4908601 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2759.000000,2249.000000, 0.550919,0.449081, maf-5-some-pop 639 chr1 7205949 7205950 rs1894647 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 639 chr1 7208216 7208217 rs12751444 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3699.000000,1309.000000, 0.738618,0.261382, maf-5-some-pop 640 chr1 7213618 7213619 rs7527889 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3665.000000,1343.000000, 0.731829,0.268171, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7214373 7214374 rs13376128 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 640 chr1 7220969 7220970 rs4908602 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7221413 7221414 rs6675661 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2501.000000,2507.000000, 0.499401,0.500599, maf-5-some-pop,maf-5-all-pops 640 chr1 7221457 7221458 rs6667429 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7222041 7222042 rs6678950 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3130.000000,1878.000000, 0.625000,0.375000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7222101 7222102 rs11120869 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 640 chr1 7233396 7233397 rs17030465 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 640 chr1 7235627 7235628 rs6687729 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1079.000000,3929.000000, 0.215455,0.784545, maf-5-some-pop,maf-5-all-pops 640 chr1 7236809 7236810 rs6680365 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2319.000000,2689.000000, 0.463059,0.536941, maf-5-some-pop,maf-5-all-pops 640 chr1 7238662 7238663 rs7550518 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1618.000000,3390.000000, 0.323083,0.676917, maf-5-some-pop 640 chr1 7245433 7245434 rs4908605 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2622.000000,2386.000000, 0.523562,0.476438, maf-5-some-pop,maf-5-all-pops 640 chr1 7252365 7252366 rs11120876 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop 640 chr1 7254021 7254022 rs11803793 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4561.000000,447.000000, 0.910743,0.089257, maf-5-some-pop,genotype-conflict 640 chr1 7269282 7269283 rs4908448 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2647.000000,2361.000000, 0.528554,0.471446, maf-5-some-pop,maf-5-all-pops 640 chr1 7269322 7269323 rs4908607 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 640 chr1 7270319 7270320 rs1304711 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 640 chr1 7270537 7270538 rs1304712 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops 640 chr1 7271471 7271472 rs2157499 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 640 chr1 7271650 7271651 rs7514988 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2701.000000,2307.000000, 0.539337,0.460663, maf-5-some-pop,maf-5-all-pops 640 chr1 7273019 7273020 rs12035586 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2369.000000,2639.000000, 0.473043,0.526957, maf-5-some-pop,maf-5-all-pops 640 chr1 7278775 7278776 rs17030589 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 640 chr1 7281491 7281492 rs766156 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop,genotype-conflict 640 chr1 7288506 7288507 rs12144179 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop 640 chr1 7292416 7292417 rs6577424 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1342.000000,3666.000000, 0.267971,0.732029, maf-5-some-pop 640 chr1 7297399 7297400 rs7521056 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop 640 chr1 7299617 7299618 rs4908451 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3613.000000,1395.000000, 0.721446,0.278554, maf-5-some-pop,maf-5-all-pops 640 chr1 7307809 7307810 rs6693725 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1955.000000,3053.000000, 0.390375,0.609625, maf-5-some-pop,maf-5-all-pops 640 chr1 7310350 7310351 rs2067996 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SHGC/AFFYMETRIX,TISHKOFF, 4 A,C,G,T, 325.000000,4683.000000,4683.000000,325.000000, 0.032448,0.467552,0.467552,0.032448, maf-5-some-pop 640 chr1 7312171 7312172 rs1476047 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop,maf-5-all-pops 640 chr1 7312257 7312258 rs6701870 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop 640 chr1 7314230 7314231 rs6577427 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop 640 chr1 7314528 7314529 rs7544004 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops 640 chr1 7314654 7314655 rs6577428 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 640 chr1 7315084 7315085 rs12028181 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3194.000000,1814.000000, 0.637780,0.362220, maf-5-some-pop,maf-5-all-pops 640 chr1 7316030 7316031 rs7512599 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop,maf-5-all-pops 640 chr1 7316113 7316114 rs7549870 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3633.000000,1375.000000, 0.725439,0.274561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7316135 7316136 rs7547519 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1359.000000,3649.000000, 0.271366,0.728634, maf-5-some-pop,maf-5-all-pops 640 chr1 7316667 7316668 rs9988463 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2587.000000,2421.000000, 0.516573,0.483427, maf-5-some-pop,maf-5-all-pops 640 chr1 7317658 7317659 rs6661170 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2439.000000,2569.000000, 0.487021,0.512979, maf-5-some-pop,maf-5-all-pops 640 chr1 7320046 7320047 rs7515140 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,maf-5-all-pops 640 chr1 7320902 7320903 rs7549382 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop 640 chr1 7322159 7322160 rs4908612 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2951.000000,2057.000000, 0.589257,0.410743, maf-5-some-pop,genotype-conflict 640 chr1 7324467 7324468 rs6577430 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop,maf-5-all-pops 640 chr1 7324958 7324959 rs1034453 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7326200 7326201 rs7517429 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,genotype-conflict 640 chr1 7326519 7326520 rs1034454 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 4565.000000,443.000000, 0.911542,0.088458, maf-5-some-pop 640 chr1 7326674 7326675 rs11120892 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop 640 chr1 7331346 7331347 rs2412147 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1295.000000,3713.000000,3713.000000,1295.000000, 0.129293,0.370707,0.370707,0.129293, maf-5-some-pop,maf-5-all-pops 640 chr1 7334572 7334573 rs7528998 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4022.000000,986.000000, 0.803115,0.196885, maf-5-some-pop,maf-5-all-pops 640 chr1 7336977 7336978 rs4908615 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2388.000000,2620.000000, 0.476837,0.523163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7340843 7340844 rs11120894 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1676.000000,3332.000000, 0.334665,0.665335, maf-5-some-pop,genotype-conflict 641 chr1 7343665 7343666 rs6687562 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 641 chr1 7349112 7349113 rs4908453 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1975.000000,3033.000000, 0.394369,0.605631, maf-5-some-pop,maf-5-all-pops 641 chr1 7351433 7351434 rs1894654 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops 641 chr1 7352327 7352328 rs6577435 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 861.000000,4147.000000, 0.171925,0.828075, maf-5-some-pop 641 chr1 7352973 7352974 rs2071924 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop,maf-5-all-pops 641 chr1 7354116 7354117 rs17350193 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 641 chr1 7361337 7361338 rs11120896 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1718.000000,3290.000000, 0.343051,0.656949, maf-5-some-pop,maf-5-all-pops 641 chr1 7362780 7362781 rs9660884 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7363309 7363310 rs10489142 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4132.000000,876.000000, 0.825080,0.174920, maf-5-some-pop 641 chr1 7377522 7377523 rs4908455 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 641 chr1 7379197 7379198 rs7543711 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop 641 chr1 7381140 7381141 rs12134803 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 641 chr1 7391982 7391983 rs11120902 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop 641 chr1 7392593 7392594 rs2301462 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP,YUSUKE, 2 C,T, 2089.000000,2919.000000, 0.417133,0.582867, maf-5-some-pop,maf-5-all-pops 641 chr1 7392781 7392782 rs2301463 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 2504.000000,2504.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 641 chr1 7393319 7393320 rs10864294 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop 641 chr1 7393772 7393773 rs10864295 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3297.000000,1711.000000, 0.658347,0.341653, maf-5-some-pop,maf-5-all-pops 641 chr1 7394817 7394818 rs6691196 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops 641 chr1 7397399 7397400 rs7553372 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1979.000000,3029.000000, 0.395168,0.604832, maf-5-some-pop,maf-5-all-pops 641 chr1 7399628 7399629 rs6674628 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3773.000000,1235.000000, 0.753395,0.246605, maf-5-some-pop 641 chr1 7402479 7402480 rs705681 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1433.000000,3575.000000, 0.286142,0.713858, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7402501 7402502 rs705680 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 641 chr1 7406113 7406114 rs845244 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1455.000000,3553.000000,3553.000000,1455.000000, 0.145268,0.354732,0.354732,0.145268, maf-5-some-pop,maf-5-all-pops 641 chr1 7406418 7406419 rs4908456 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1897.000000,3111.000000, 0.378794,0.621206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7408417 7408418 rs845241 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3374.000000,1634.000000,1634.000000,3374.000000, 0.336861,0.163139,0.163139,0.336861, maf-5-some-pop,maf-5-all-pops 641 chr1 7409155 7409156 rs845240 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1501.000000,3507.000000,3507.000000,1501.000000, 0.149860,0.350140,0.350140,0.149860, maf-5-some-pop,maf-5-all-pops 641 chr1 7412050 7412051 rs845237 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 411.000000,4597.000000,4597.000000,411.000000, 0.041034,0.458966,0.458966,0.041034, maf-5-some-pop 641 chr1 7412087 7412088 rs4908624 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop,maf-5-all-pops 641 chr1 7412960 7412961 rs4908625 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1443.000000,3565.000000, 0.288139,0.711861, maf-5-some-pop,maf-5-all-pops 641 chr1 7417466 7417467 rs11801158 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 641 chr1 7419299 7419300 rs11120905 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop 641 chr1 7419590 7419591 rs845196 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2565.000000,2443.000000,2443.000000,2565.000000, 0.256090,0.243910,0.243910,0.256090, maf-5-some-pop,maf-5-all-pops 641 chr1 7419679 7419680 rs845195 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2465.000000,2543.000000,2543.000000,2465.000000, 0.246106,0.253894,0.253894,0.246106, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7419773 7419774 rs705675 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 357.000000,4651.000000,4651.000000,357.000000, 0.035643,0.464357,0.464357,0.035643, maf-5-some-pop 641 chr1 7420888 7420889 rs845194 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2613.000000,2395.000000,2395.000000,2613.000000, 0.260883,0.239117,0.239117,0.260883, maf-5-some-pop,maf-5-all-pops 641 chr1 7420903 7420904 rs705672 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2568.000000,2440.000000,2440.000000,2568.000000, 0.256390,0.243610,0.243610,0.256390, maf-5-some-pop,maf-5-all-pops 641 chr1 7422550 7422551 rs845262 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2963.000000,2045.000000, 0.591653,0.408347, maf-5-some-pop,maf-5-all-pops 641 chr1 7425063 7425064 rs1418489 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,genotype-conflict 641 chr1 7425416 7425417 rs845265 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2562.000000,2446.000000, 0.511581,0.488419, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7429091 7429092 rs845222 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2397.000000,2611.000000,2611.000000,2397.000000, 0.239317,0.260683,0.260683,0.239317, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7430393 7430394 rs3752543 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1472.000000,3536.000000, 0.293930,0.706070, maf-5-some-pop,maf-5-all-pops 641 chr1 7432614 7432615 rs11579620 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,genotype-conflict 641 chr1 7433861 7433862 rs845218 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 641 chr1 7434071 7434072 rs845217 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 641 chr1 7443086 7443087 rs845208 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2070.000000,2938.000000,2938.000000,2070.000000, 0.206669,0.293331,0.293331,0.206669, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7444518 7444519 rs4908629 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop 641 chr1 7445434 7445435 rs6677949 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 641 chr1 7448255 7448256 rs845232 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2890.000000,2118.000000,2118.000000,2890.000000, 0.288538,0.211462,0.211462,0.288538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7449970 7449971 rs7524314 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1710.000000,3298.000000, 0.341454,0.658546, maf-5-some-pop,maf-5-all-pops,microattr-tpa 641 chr1 7450005 7450006 rs6577440 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop,maf-5-all-pops 641 chr1 7460432 7460433 rs2097518 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7468204 7468205 rs845206 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 641 chr1 7468228 7468229 rs6695220 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,G, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop 641 chr1 7468360 7468361 rs10127772 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 641 chr1 7468835 7468836 rs763162 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1094.000000,3914.000000, 0.218450,0.781550, maf-5-some-pop,maf-5-all-pops 641 chr1 7469037 7469038 rs763163 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 641 chr1 7469250 7469251 rs10864301 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7482756 7482757 rs4908637 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop 642 chr1 7486316 7486317 rs12088178 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7491319 7491320 rs17030828 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 642 chr1 7491423 7491424 rs17030829 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 642 chr1 7492119 7492120 rs1193219 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2211.000000,2797.000000, 0.441494,0.558506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7492264 7492265 rs1193220 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2884.000000,2124.000000, 0.575879,0.424121, maf-5-some-pop,maf-5-all-pops 642 chr1 7492990 7492991 rs1193221 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1585.000000,3423.000000, 0.316494,0.683506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7495372 7495373 rs12092405 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 642 chr1 7502287 7502288 rs17030881 0 + A A A/C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 4678.000000,324.000000,6.000000, 0.934105,0.064696,0.001198, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7505840 7505841 rs17030886 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3830.000000,1178.000000, 0.764776,0.235224, maf-5-some-pop 642 chr1 7513251 7513252 rs1193247 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1531.000000,3477.000000,3477.000000,1531.000000, 0.152855,0.347145,0.347145,0.152855, maf-5-some-pop,maf-5-all-pops 642 chr1 7514620 7514621 rs1880808 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3883.000000,1125.000000,1125.000000,3883.000000, 0.387680,0.112320,0.112320,0.387680, maf-5-some-pop 642 chr1 7521584 7521585 rs1616122 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1974.000000,3034.000000,3034.000000,1974.000000, 0.197085,0.302915,0.302915,0.197085, maf-5-some-pop,maf-5-all-pops,microattr-tpa 642 chr1 7522994 7522995 rs7553147 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,T, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 642 chr1 7523779 7523780 rs17445205 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop 642 chr1 7526370 7526371 rs1193238 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,maf-5-all-pops 642 chr1 7527995 7527996 rs1201529 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2684.000000,2324.000000,2324.000000,2684.000000, 0.267971,0.232029,0.232029,0.267971, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7528668 7528669 rs1149331 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2007.000000,3001.000000,3001.000000,2007.000000, 0.200379,0.299621,0.299621,0.200379, maf-5-some-pop,maf-5-all-pops 642 chr1 7528845 7528846 rs1149332 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 636.000000,4372.000000,4372.000000,636.000000, 0.063498,0.436502,0.436502,0.063498, maf-5-some-pop,genotype-conflict 642 chr1 7529086 7529087 rs732400 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,EVA-GONL,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 642 chr1 7529243 7529244 rs732401 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 642 chr1 7531337 7531338 rs6664987 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop,genotype-conflict 642 chr1 7536186 7536187 rs1011127 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2164.000000,2844.000000,2844.000000,2164.000000, 0.216054,0.283946,0.283946,0.216054, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7536237 7536238 rs1011126 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1132.000000,3876.000000,3876.000000,1132.000000, 0.113019,0.386981,0.386981,0.113019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7536568 7536569 rs11806825 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 571.000000,4437.000000, 0.114018,0.885982, maf-5-some-pop 642 chr1 7536614 7536615 rs11807910 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 642 chr1 7536742 7536743 rs1149339 0 - A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 642 chr1 7536882 7536883 rs17030961 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,genotype-conflict 642 chr1 7537499 7537500 rs1193182 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7541290 7541291 rs2693958 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3160.000000,1848.000000, 0.630990,0.369010, maf-5-some-pop,maf-5-all-pops 642 chr1 7541344 7541345 rs2796483 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2369.000000,2639.000000, 0.473043,0.526957, maf-5-some-pop,maf-5-all-pops 642 chr1 7542022 7542023 rs1619495 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1953.000000,3055.000000, 0.389976,0.610024, maf-5-some-pop,maf-5-all-pops 642 chr1 7546199 7546200 rs1079330 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 3808.000000,1200.000000, 0.760383,0.239617, maf-5-some-pop 642 chr1 7547211 7547212 rs1193163 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 4 A,C,G,T, 4468.000000,540.000000,540.000000,4468.000000, 0.446086,0.053914,0.053914,0.446086, maf-5-some-pop 642 chr1 7549487 7549488 rs17030993 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,maf-5-all-pops,microattr-tpa 642 chr1 7549739 7549740 rs12091424 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop 642 chr1 7551454 7551455 rs7526892 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2218.000000,2790.000000, 0.442891,0.557109, maf-5-some-pop,maf-5-all-pops 642 chr1 7551630 7551631 rs1193230 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1359.000000,3649.000000,3649.000000,1359.000000, 0.135683,0.364317,0.364317,0.135683, maf-5-some-pop,maf-5-all-pops 642 chr1 7551965 7551966 rs12095468 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop 642 chr1 7552325 7552326 rs1750849 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 642 chr1 7552460 7552461 rs1309332 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1712.000000,3296.000000,3296.000000,1712.000000, 0.170927,0.329073,0.329073,0.170927, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7554981 7554982 rs1725269 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3626.000000,1382.000000,1382.000000,3626.000000, 0.362021,0.137979,0.137979,0.362021, maf-5-some-pop,maf-5-all-pops 642 chr1 7557151 7557152 rs10864304 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3895.000000,1113.000000, 0.777756,0.222244, maf-5-some-pop,genotype-conflict 642 chr1 7561761 7561762 rs1750850 0 - G G C/G genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 642 chr1 7562124 7562125 rs12562695 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop 642 chr1 7562338 7562339 rs1725260 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1383.000000,3625.000000, 0.276158,0.723842, maf-5-some-pop,maf-5-all-pops 642 chr1 7562435 7562436 rs1725261 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop,genotype-conflict 642 chr1 7566788 7566789 rs12033734 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,maf-5-all-pops 642 chr1 7567036 7567037 rs11120955 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 1112.000000,3896.000000, 0.222045,0.777955, maf-5-some-pop 642 chr1 7571462 7571463 rs11120958 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop,genotype-conflict 642 chr1 7571995 7571996 rs6577446 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2175.000000,2833.000000, 0.434305,0.565695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7572261 7572262 rs749958 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop,maf-5-all-pops 642 chr1 7577761 7577762 rs2177901 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1973.000000,3035.000000,3035.000000,1973.000000, 0.196985,0.303015,0.303015,0.196985, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7581992 7581993 rs4908646 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop,maf-5-all-pops 642 chr1 7590447 7590448 rs1193167 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 1970.000000,3038.000000, 0.393371,0.606629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7599331 7599332 rs10218514 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop,maf-5-all-pops 642 chr1 7600253 7600254 rs1193169 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1178.000000,3830.000000, 0.235224,0.764776, maf-5-some-pop,maf-5-all-pops 642 chr1 7600728 7600729 rs17031077 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop 643 chr1 7604777 7604778 rs1725264 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop,maf-5-all-pops 643 chr1 7611605 7611606 rs4908654 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop 643 chr1 7612283 7612284 rs11120970 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2862.000000,2146.000000, 0.571486,0.428514, maf-5-some-pop,maf-5-all-pops 643 chr1 7612385 7612386 rs12562733 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3419.000000,1589.000000, 0.682708,0.317292, maf-5-some-pop,maf-5-all-pops 643 chr1 7615314 7615315 rs17031105 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 643 chr1 7616739 7616740 rs12755955 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2744.000000,2264.000000, 0.547923,0.452077, maf-5-some-pop,maf-5-all-pops 643 chr1 7617554 7617555 rs6697897 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 643 chr1 7621588 7621589 rs6696544 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1673.000000,3335.000000, 0.334065,0.665935, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7626994 7626995 rs17031145 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 643 chr1 7633143 7633144 rs12059360 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 643 chr1 7633259 7633260 rs11120978 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 643 chr1 7633612 7633613 rs2003397 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop 643 chr1 7633797 7633798 rs4317829 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop,genotype-conflict 643 chr1 7635001 7635002 rs17031148 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 643 chr1 7635252 7635253 rs7536730 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,genotype-conflict 643 chr1 7636970 7636971 rs41319044 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4073.000000,935.000000,935.000000,4073.000000, 0.406649,0.093351,0.093351,0.406649, maf-5-some-pop 643 chr1 7637978 7637979 rs10492961 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2439.000000,2569.000000, 0.487021,0.512979, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7640618 7640619 rs17031150 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop 643 chr1 7641387 7641388 rs873433 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7643047 7643048 rs12076773 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 643 chr1 7644205 7644206 rs12064138 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 643 chr1 7644639 7644640 rs6687621 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 643 chr1 7649714 7649715 rs7519687 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1132.000000,3876.000000, 0.226038,0.773962, maf-5-some-pop,maf-5-all-pops 643 chr1 7666680 7666681 rs6686783 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop 643 chr1 7671307 7671308 rs11577471 0 + C C A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 3 A,C,T, 95.000000,3969.000000,944.000000, 0.018970,0.792532,0.188498, maf-5-some-pop,maf-5-all-pops 643 chr1 7678252 7678253 rs6683993 0 + T T G/T genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop,genotype-conflict 643 chr1 7682236 7682237 rs12139380 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7682488 7682489 rs12139470 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,maf-5-all-pops 643 chr1 7682772 7682773 rs12139551 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1256.000000,3752.000000, 0.250799,0.749201, maf-5-some-pop,maf-5-all-pops 643 chr1 7682793 7682794 rs17031185 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop 643 chr1 7684412 7684413 rs4311910 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop 643 chr1 7688058 7688059 rs17031211 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3618.000000,1390.000000, 0.722444,0.277556, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7688667 7688668 rs12089124 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,maf-5-all-pops 643 chr1 7689388 7689389 rs10495758 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop 643 chr1 7697178 7697179 rs6661496 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 643 chr1 7700747 7700748 rs6659902 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 643 chr1 7705143 7705144 rs12058235 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop 643 chr1 7707286 7707287 rs4908660 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7710307 7710308 rs17027053 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop,maf-5-all-pops 643 chr1 7711425 7711426 rs12126201 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 643 chr1 7717961 7717962 rs9434882 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1976.000000,3032.000000, 0.394569,0.605431, maf-5-some-pop,maf-5-all-pops 643 chr1 7718092 7718093 rs17376559 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop,genotype-conflict 643 chr1 7718954 7718955 rs17031270 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 643 chr1 7731729 7731730 rs4908473 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 644 chr1 7733884 7733885 rs17031321 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 644 chr1 7735379 7735380 rs6658296 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,genotype-conflict 644 chr1 7737798 7737799 rs3011926 0 + A A A/G genomic single unknown 0 0 intron exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2045.000000,2963.000000, 0.408347,0.591653, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7738179 7738180 rs4908677 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7742024 7742025 rs947413 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2647.000000,2361.000000, 0.528554,0.471446, maf-5-some-pop,maf-5-all-pops 644 chr1 7748925 7748926 rs947417 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop 644 chr1 7753131 7753132 rs2995032 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7757997 7757998 rs4908680 0 + T T C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 3 C,G,T, 69.000000,4611.000000,328.000000, 0.013778,0.920727,0.065495, maf-5-some-pop,genotype-conflict 644 chr1 7758797 7758798 rs17461217 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,genotype-conflict 644 chr1 7759063 7759064 rs12071434 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop 644 chr1 7770900 7770901 rs2995034 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2706.000000,2302.000000, 0.540335,0.459665, maf-5-some-pop,maf-5-all-pops 644 chr1 7773379 7773380 rs4908684 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3247.000000,1761.000000, 0.648363,0.351637, maf-5-some-pop,maf-5-all-pops 644 chr1 7774070 7774071 rs3121224 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,genotype-conflict 644 chr1 7779800 7779801 rs12078131 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop 644 chr1 7790287 7790288 rs11121007 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop 644 chr1 7795553 7795554 rs4908688 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop 644 chr1 7797170 7797171 rs11121014 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop 644 chr1 7797733 7797734 rs1417986 0 + T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,T, 3001.000000,2007.000000, 0.599241,0.400759, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7810542 7810543 rs2066293 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1933.000000,3075.000000, 0.385982,0.614018, maf-5-some-pop 644 chr1 7811960 7811961 rs9919220 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3841.000000,1167.000000, 0.766973,0.233027, maf-5-some-pop,genotype-conflict 644 chr1 7812397 7812398 rs9919223 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1860.000000,3148.000000, 0.371406,0.628594, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7816123 7816124 rs41479450 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop 644 chr1 7816542 7816543 rs4908481 0 + C C A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2845.000000,2163.000000, 0.568091,0.431909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7817855 7817856 rs2051646 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2741.000000,2267.000000, 0.547324,0.452676, maf-5-some-pop,maf-5-all-pops 644 chr1 7818317 7818318 rs12093175 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,genotype-conflict 644 chr1 7822722 7822723 rs41402249 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 777.000000,4231.000000, 0.155152,0.844848, maf-5-some-pop 644 chr1 7822956 7822957 rs11587880 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 766.000000,4242.000000, 0.152955,0.847045, maf-5-some-pop,maf-5-all-pops 644 chr1 7823835 7823836 rs707454 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 118.000000,4890.000000,4890.000000,118.000000, 0.011781,0.488219,0.488219,0.011781, maf-5-some-pop 644 chr1 7825310 7825311 rs707455 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2935.000000,2073.000000,2073.000000,2935.000000, 0.293031,0.206969,0.206969,0.293031, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,genotype-conflict 644 chr1 7826346 7826347 rs697672 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop,genotype-conflict 644 chr1 7826392 7826393 rs7515025 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop 644 chr1 7829106 7829107 rs1044245 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SI_EXO,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop 644 chr1 7829285 7829286 rs41454244 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4722.000000,286.000000,286.000000,4722.000000, 0.471446,0.028554,0.028554,0.471446, maf-5-some-pop 644 chr1 7832211 7832212 rs707458 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2198.000000,2810.000000,2810.000000,2198.000000, 0.219449,0.280551,0.280551,0.219449, maf-5-some-pop,maf-5-all-pops 644 chr1 7833301 7833302 rs2239846 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 644 chr1 7833484 7833485 rs11576572 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop 644 chr1 7837841 7837842 rs697673 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 817.000000,4191.000000,4191.000000,817.000000, 0.081569,0.418431,0.418431,0.081569, maf-5-some-pop,microattr-tpa,genotype-conflict 644 chr1 7838690 7838691 rs707460 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2681.000000,2327.000000,2327.000000,2681.000000, 0.267672,0.232328,0.232328,0.267672, maf-5-some-pop,maf-5-all-pops 644 chr1 7841548 7841549 rs697680 0 - A A G/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 389.000000,4619.000000,4619.000000,389.000000, 0.038838,0.461162,0.461162,0.038838, maf-5-some-pop 644 chr1 7846526 7846527 rs836755 0 - A A G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSAHASNP,TISHKOFF, 4 A,C,G,T, 2794.000000,2214.000000,2214.000000,2794.000000, 0.278954,0.221046,0.221046,0.278954, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7847835 7847836 rs228727 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2320.000000,2688.000000,2688.000000,2320.000000, 0.231629,0.268371,0.268371,0.231629, maf-5-some-pop,maf-5-all-pops 644 chr1 7848556 7848557 rs11121023 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7850061 7850062 rs707463 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2142.000000,2866.000000,2866.000000,2142.000000, 0.213858,0.286142,0.286142,0.213858, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7850080 7850081 rs10864315 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3741.000000,1267.000000, 0.747005,0.252995, maf-5-some-pop,maf-5-all-pops 644 chr1 7850217 7850218 rs697686 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2139.000000,2869.000000,2869.000000,2139.000000, 0.213558,0.286442,0.286442,0.213558, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7850897 7850898 rs4908694 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop 644 chr1 7852116 7852117 rs170631 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 644 chr1 7852918 7852919 rs875994 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 501.000000,4507.000000, 0.100040,0.899960, maf-5-some-pop 644 chr1 7858134 7858135 rs1012477 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 644 chr1 7859190 7859191 rs17031578 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 644 chr1 7863292 7863293 rs228642 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 645 chr1 7879129 7879130 rs228688 0 + T T G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops,genotype-conflict 645 chr1 7879626 7879627 rs10462018 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4461.000000,547.000000, 0.890775,0.109225, maf-5-some-pop 645 chr1 7881779 7881780 rs10127838 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop,maf-5-all-pops 645 chr1 7883833 7883834 rs228694 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2304.000000,2704.000000, 0.460064,0.539936, maf-5-some-pop,maf-5-all-pops 645 chr1 7884579 7884580 rs697690 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2124.000000,2884.000000, 0.424121,0.575879, maf-5-some-pop,maf-5-all-pops 645 chr1 7884632 7884633 rs4345826 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 645 chr1 7886423 7886424 rs697693 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1591.000000,3417.000000,3417.000000,1591.000000, 0.158846,0.341154,0.341154,0.158846, maf-5-some-pop,maf-5-all-pops 645 chr1 7888437 7888438 rs17374439 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop 645 chr1 7906007 7906008 rs707472 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops 645 chr1 7908887 7908888 rs228652 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1348.000000,3660.000000,3660.000000,1348.000000, 0.134585,0.365415,0.365415,0.134585, maf-5-some-pop,maf-5-all-pops 645 chr1 7914834 7914835 rs4908486 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HKU-CPLAB,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3963.000000,1045.000000, 0.791334,0.208666, maf-5-some-pop 645 chr1 7917631 7917632 rs228637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4247.000000,761.000000, 0.848043,0.151957, maf-5-some-pop 645 chr1 7919362 7919363 rs17374781 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4540.000000,468.000000, 0.906550,0.093451, maf-5-some-pop 645 chr1 7920422 7920423 rs2859389 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops,genotype-conflict 645 chr1 7921951 7921952 rs531485 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 G,T, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop 645 chr1 7923575 7923576 rs17031661 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 645 chr1 7923585 7923586 rs515830 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 666.000000,4342.000000,4342.000000,666.000000, 0.066494,0.433506,0.433506,0.066494, maf-5-some-pop 645 chr1 7926541 7926542 rs504560 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1480.000000,3528.000000,3528.000000,1480.000000, 0.147764,0.352236,0.352236,0.147764, maf-5-some-pop,microattr-tpa 645 chr1 7927455 7927456 rs500508 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1544.000000,3464.000000,3464.000000,1544.000000, 0.154153,0.345847,0.345847,0.154153, maf-5-some-pop,maf-5-all-pops 645 chr1 7927509 7927510 rs857081 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2711.000000,2297.000000,2297.000000,2711.000000, 0.270667,0.229333,0.229333,0.270667, maf-5-some-pop,maf-5-all-pops 645 chr1 7927980 7927981 rs579992 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4543.000000,465.000000,465.000000,4543.000000, 0.453574,0.046426,0.046426,0.453574, maf-5-some-pop 645 chr1 7928180 7928181 rs2066980 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2793.000000,2215.000000, 0.557708,0.442292, maf-5-some-pop,maf-5-all-pops 645 chr1 7928758 7928759 rs2066978 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 740.000000,4268.000000, 0.147764,0.852236, maf-5-some-pop,genotype-conflict 645 chr1 7931587 7931588 rs228721 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 696.000000,4312.000000,4312.000000,696.000000, 0.069489,0.430511,0.430511,0.069489, maf-5-some-pop 645 chr1 7933456 7933457 rs228720 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1672.000000,3336.000000,3336.000000,1672.000000, 0.166933,0.333067,0.333067,0.166933, maf-5-some-pop,maf-5-all-pops 645 chr1 7934153 7934154 rs1891598 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 680.000000,4328.000000,4328.000000,680.000000, 0.067891,0.432109,0.432109,0.067891, maf-5-some-pop 645 chr1 7934170 7934171 rs228719 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1662.000000,3346.000000,3346.000000,1662.000000, 0.165935,0.334065,0.334065,0.165935, maf-5-some-pop,maf-5-all-pops 645 chr1 7944263 7944264 rs228703 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3519.000000,1489.000000,1489.000000,3519.000000, 0.351338,0.148662,0.148662,0.351338, maf-5-some-pop 645 chr1 7952202 7952203 rs1040395 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 645 chr1 7952403 7952404 rs1040396 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 990.000000,4018.000000, 0.197684,0.802316, maf-5-some-pop,genotype-conflict 645 chr1 7955088 7955089 rs227147 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2613.000000,2395.000000, 0.521765,0.478235, maf-5-some-pop,maf-5-all-pops 645 chr1 7956572 7956573 rs41528652 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4610.000000,398.000000,398.000000,4610.000000, 0.460264,0.039736,0.039736,0.460264, maf-5-some-pop 645 chr1 7961205 7961206 rs227163 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1629.000000,3379.000000, 0.325280,0.674720, maf-5-some-pop,maf-5-all-pops,microattr-tpa 645 chr1 7961293 7961294 rs12068202 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop 645 chr1 7975788 7975789 rs161803 0 - A A C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3368.000000,1640.000000,1640.000000,3368.000000, 0.336262,0.163738,0.163738,0.336262, maf-5-some-pop,genotype-conflict 645 chr1 7989138 7989139 rs161822 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3984.000000,1024.000000,1024.000000,3984.000000, 0.397764,0.102236,0.102236,0.397764, maf-5-some-pop 645 chr1 7989285 7989286 rs226484 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3684.000000,1324.000000,1324.000000,3684.000000, 0.367812,0.132188,0.132188,0.367812, maf-5-some-pop 645 chr1 7989565 7989566 rs2453021 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3627.000000,1381.000000, 0.724241,0.275759, maf-5-some-pop 645 chr1 7992614 7992615 rs863171 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2897.000000,2111.000000, 0.578474,0.421526, maf-5-some-pop,maf-5-all-pops 645 chr1 7994419 7994420 rs2493214 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2774.000000,2234.000000, 0.553914,0.446086, maf-5-some-pop,maf-5-all-pops 645 chr1 7995032 7995033 rs9657980 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,CGM_KYOTO,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,ILLUMINA,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO, 4 A,C,G,T, 4972.000000,36.000000,36.000000,4972.000000, 0.496406,0.003594,0.003594,0.496406, genotype-conflict 646 chr1 7999016 7999017 rs9657961 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 4754.000000,254.000000,254.000000,4754.000000, 0.474641,0.025359,0.025359,0.474641, maf-5-some-pop,genotype-conflict 646 chr1 7999601 7999602 rs161811 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1013.000000,3995.000000,3995.000000,1013.000000, 0.101138,0.398862,0.398862,0.101138, maf-5-some-pop,genotype-conflict 646 chr1 8000561 8000562 rs9657956 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 255.000000,4753.000000,4753.000000,255.000000, 0.025459,0.474541,0.474541,0.025459, maf-5-some-pop 646 chr1 8007715 8007716 rs2493215 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3122.000000,1886.000000, 0.623403,0.376597, maf-5-some-pop,maf-5-all-pops,genotype-conflict 646 chr1 8007921 8007922 rs226472 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,genotype-conflict 646 chr1 8008967 8008968 rs226473 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4316.000000,692.000000, 0.861821,0.138179, maf-5-some-pop,genotype-conflict 646 chr1 8009762 8009763 rs226474 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1377.000000,3631.000000, 0.274960,0.725040, maf-5-some-pop 646 chr1 8015435 8015436 rs150914 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 G,T, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop 646 chr1 8021777 8021778 rs226249 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,KYUGEN,PJP,SC_JCM,SC_SNP,SHGC,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3192.000000,1816.000000, 0.637380,0.362620, maf-5-some-pop,maf-5-all-pops 646 chr1 8030299 8030300 rs178932 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3692.000000,1316.000000, 0.737220,0.262780, maf-5-some-pop,genotype-conflict 646 chr1 8030855 8030856 rs6703670 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SHGC,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 646 chr1 8032575 8032576 rs7516775 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,genotype-conflict 646 chr1 8035713 8035714 rs161808 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 4148.000000,860.000000,860.000000,4148.000000, 0.414137,0.085863,0.085863,0.414137, maf-5-some-pop 646 chr1 8037495 8037496 rs161807 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 849.000000,4159.000000, 0.169529,0.830471, maf-5-some-pop 646 chr1 8042735 8042736 rs161801 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop,genotype-conflict 646 chr1 8053134 8053135 rs17367289 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3637.000000,1371.000000, 0.726238,0.273762, maf-5-some-pop,maf-5-all-pops 646 chr1 8066913 8066914 rs225100 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1809.000000,3199.000000,3199.000000,1809.000000, 0.180611,0.319389,0.319389,0.180611, maf-5-some-pop,maf-5-all-pops 646 chr1 8074871 8074872 rs397349 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops 646 chr1 8084354 8084355 rs28624 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 646 chr1 8095359 8095360 rs11121071 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,C, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop 646 chr1 8095499 8095500 rs225132 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3241.000000,1767.000000,1767.000000,3241.000000, 0.323582,0.176418,0.176418,0.323582, maf-5-some-pop,maf-5-all-pops,microattr-tpa 646 chr1 8100139 8100140 rs10489451 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,genotype-conflict 646 chr1 8100638 8100639 rs9434586 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,genotype-conflict 646 chr1 8119261 8119262 rs12093176 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop,genotype-conflict 647 chr1 8129506 8129507 rs12748993 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop 647 chr1 8130839 8130840 rs11121078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop,genotype-conflict 647 chr1 8151223 8151224 rs11121086 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1796.000000,3212.000000, 0.358626,0.641374, maf-5-some-pop,maf-5-all-pops 647 chr1 8161849 8161850 rs11487884 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 647 chr1 8163121 8163122 rs4908727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3488.000000,1520.000000, 0.696486,0.303514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8165399 8165400 rs13374405 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop 647 chr1 8165618 8165619 rs7545677 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8165718 8165719 rs7553544 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1815.000000,3193.000000, 0.362420,0.637580, maf-5-some-pop,maf-5-all-pops 647 chr1 8165974 8165975 rs6703955 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3395.000000,1613.000000, 0.677915,0.322085, maf-5-some-pop 647 chr1 8168633 8168634 rs11121090 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops 647 chr1 8168992 8168993 rs4369247 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1666.000000,3342.000000, 0.332668,0.667332, maf-5-some-pop,maf-5-all-pops 647 chr1 8173368 8173369 rs7524424 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8174196 8174197 rs4418631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1784.000000,3224.000000, 0.356230,0.643770, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8174414 8174415 rs4420111 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 647 chr1 8176193 8176194 rs11581227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 994.000000,4014.000000, 0.198482,0.801518, maf-5-some-pop,genotype-conflict 647 chr1 8176625 8176626 rs12134193 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 647 chr1 8182587 8182588 rs6577467 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop 647 chr1 8183484 8183485 rs6698399 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop 647 chr1 8183614 8183615 rs6698516 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop 647 chr1 8187210 8187211 rs4908736 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3208.000000,1800.000000, 0.640575,0.359425, maf-5-some-pop,genotype-conflict 647 chr1 8187299 8187300 rs4908737 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop,genotype-conflict 647 chr1 8191791 8191792 rs12136685 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 647 chr1 8192625 8192626 rs7534867 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop,maf-5-all-pops 647 chr1 8192924 8192925 rs12566369 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2634.000000,2374.000000, 0.525958,0.474042, maf-5-some-pop,maf-5-all-pops 647 chr1 8195225 8195226 rs7529511 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3026.000000,1982.000000, 0.604233,0.395767, maf-5-some-pop,maf-5-all-pops 647 chr1 8195259 8195260 rs17032187 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop,maf-5-all-pops 647 chr1 8196064 8196065 rs9434615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,genotype-conflict 647 chr1 8206129 8206130 rs6577472 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1869.000000,3139.000000, 0.373203,0.626797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8206325 8206326 rs6577473 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3351.000000,1657.000000, 0.669129,0.330871, maf-5-some-pop,maf-5-all-pops 647 chr1 8208920 8208921 rs12047115 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3269.000000,1739.000000, 0.652756,0.347244, maf-5-some-pop,maf-5-all-pops 647 chr1 8209129 8209130 rs11121111 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3279.000000,1729.000000, 0.654752,0.345248, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8217086 8217087 rs12048097 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3848.000000,1160.000000, 0.768371,0.231629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8217476 8217477 rs11121119 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop,maf-5-all-pops 647 chr1 8218114 8218115 rs17509146 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,genotype-conflict 647 chr1 8222155 8222156 rs17032281 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1705.000000,3303.000000, 0.340455,0.659545, maf-5-some-pop,maf-5-all-pops 647 chr1 8224281 8224282 rs10779696 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop 647 chr1 8232624 8232625 rs12083559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 647 chr1 8237798 8237799 rs11121126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop 647 chr1 8244144 8244145 rs6663882 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3054.000000,1954.000000, 0.609824,0.390176, maf-5-some-pop,maf-5-all-pops 648 chr1 8260198 8260199 rs12140347 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop,maf-5-all-pops 648 chr1 8260833 8260834 rs11587140 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 940.000000,4068.000000, 0.187700,0.812300, maf-5-some-pop 648 chr1 8261392 8261393 rs12138839 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1883.000000,3125.000000, 0.375998,0.624002, maf-5-some-pop,maf-5-all-pops 648 chr1 8262634 8262635 rs17032303 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 648 chr1 8263492 8263493 rs385479 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 170.000000,4838.000000,4838.000000,170.000000, 0.016973,0.483027,0.483027,0.016973, maf-5-some-pop 648 chr1 8264804 8264805 rs418508 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 242.000000,4766.000000,4766.000000,242.000000, 0.024161,0.475839,0.475839,0.024161, maf-5-some-pop,genotype-conflict 648 chr1 8265933 8265934 rs12059696 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 648 chr1 8268094 8268095 rs11121129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1316.000000,3692.000000, 0.262780,0.737220, maf-5-some-pop,maf-5-all-pops 648 chr1 8268177 8268178 rs383814 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 556.000000,4452.000000,4452.000000,556.000000, 0.055511,0.444489,0.444489,0.055511, maf-5-some-pop,genotype-conflict 648 chr1 8268714 8268715 rs6701941 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1312.000000,3696.000000, 0.261981,0.738019, maf-5-some-pop,maf-5-all-pops 648 chr1 8270489 8270490 rs17032305 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops 648 chr1 8272473 8272474 rs17032307 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 648 chr1 8272525 8272526 rs425371 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2078.000000,2930.000000,2930.000000,2078.000000, 0.207468,0.292532,0.292532,0.207468, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8272695 8272696 rs17509537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,genotype-conflict 648 chr1 8273176 8273177 rs6683603 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1563.000000,3445.000000, 0.312101,0.687899, maf-5-some-pop,maf-5-all-pops 648 chr1 8276908 8276909 rs478128 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3650.000000,1358.000000,1358.000000,3650.000000, 0.364417,0.135583,0.135583,0.364417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8278898 8278899 rs428180 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3147.000000,1861.000000,1861.000000,3147.000000, 0.314197,0.185803,0.185803,0.314197, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8278928 8278929 rs428046 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4397.000000,611.000000,611.000000,4397.000000, 0.438998,0.061002,0.061002,0.438998, maf-5-some-pop 648 chr1 8280423 8280424 rs10864338 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4513.000000,495.000000, 0.901158,0.098842, maf-5-some-pop 648 chr1 8280516 8280517 rs10864340 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 648 chr1 8281563 8281564 rs506403 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop 648 chr1 8282628 8282629 rs6699685 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,genotype-conflict 648 chr1 8284656 8284657 rs394282 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,T, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 648 chr1 8286664 8286665 rs403623 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 648 chr1 8286692 8286693 rs12049468 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1256.000000,3752.000000, 0.250799,0.749201, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8286815 8286816 rs388933 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1532.000000,3476.000000,3476.000000,1532.000000, 0.152955,0.347045,0.347045,0.152955, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8287390 8287391 rs11121137 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1405.000000,3603.000000, 0.280551,0.719449, maf-5-some-pop,maf-5-all-pops 648 chr1 8287499 8287500 rs406236 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 288.000000,4720.000000,4720.000000,288.000000, 0.028754,0.471246,0.471246,0.028754, maf-5-some-pop 648 chr1 8288297 8288298 rs7554129 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 648 chr1 8288439 8288440 rs367915 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3245.000000,1763.000000,1763.000000,3245.000000, 0.323982,0.176018,0.176018,0.323982, maf-5-some-pop,maf-5-all-pops 648 chr1 8290278 8290279 rs534231 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1998.000000,3010.000000, 0.398962,0.601038, maf-5-some-pop,maf-5-all-pops 648 chr1 8295129 8295130 rs7528376 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2023.000000,2985.000000, 0.403954,0.596046, maf-5-some-pop,maf-5-all-pops 648 chr1 8304606 8304607 rs4908744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1322.000000,3686.000000, 0.263978,0.736022, maf-5-some-pop,maf-5-all-pops 648 chr1 8312581 8312582 rs12089847 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4977.000000,31.000000, 0.993810,0.006190, maf-5-some-pop 648 chr1 8313893 8313894 rs4301655 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1652.000000,3356.000000, 0.329872,0.670128, maf-5-some-pop,maf-5-all-pops 648 chr1 8316731 8316732 rs2046845 0 + A A A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2025.000000,2983.000000, 0.404353,0.595647, maf-5-some-pop,maf-5-all-pops 648 chr1 8317957 8317958 rs7520292 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1497.000000,3511.000000, 0.298922,0.701078, maf-5-some-pop,maf-5-all-pops 648 chr1 8320044 8320045 rs389709 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3683.000000,1325.000000,1325.000000,3683.000000, 0.367712,0.132288,0.132288,0.367712, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8325841 8325842 rs10779700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 648 chr1 8329709 8329710 rs2661869 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2993.000000,2015.000000,2015.000000,2993.000000, 0.298822,0.201178,0.201178,0.298822, maf-5-some-pop,maf-5-all-pops 648 chr1 8333278 8333279 rs433590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2061.000000,2947.000000, 0.411542,0.588458, maf-5-some-pop,maf-5-all-pops 648 chr1 8337973 8337974 rs10864343 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 648 chr1 8342711 8342712 rs159631 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 648 chr1 8343280 8343281 rs17032406 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,genotype-conflict 648 chr1 8343646 8343647 rs17032407 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 648 chr1 8355466 8355467 rs3850464 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2590.000000,2418.000000, 0.517173,0.482827, maf-5-some-pop,maf-5-all-pops 648 chr1 8357220 8357221 rs11121152 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8365949 8365950 rs7532257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop 648 chr1 8367703 8367704 rs12031739 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop,genotype-conflict 648 chr1 8371185 8371186 rs11121159 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3415.000000,1593.000000, 0.681909,0.318091, maf-5-some-pop 648 chr1 8372535 8372536 rs1107284 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2611.000000,2397.000000,2397.000000,2611.000000, 0.260683,0.239317,0.239317,0.260683, maf-5-some-pop,maf-5-all-pops,microattr-tpa 648 chr1 8375912 8375913 rs1466654 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2991.000000,2017.000000,2017.000000,2991.000000, 0.298622,0.201378,0.201378,0.298622, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8386729 8386730 rs9628987 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop,genotype-conflict 648 chr1 8387462 8387463 rs11584036 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8388570 8388571 rs1473309 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop 649 chr1 8393217 8393218 rs7518563 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 649 chr1 8394235 8394236 rs12711517 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,genotype-conflict 649 chr1 8394795 8394796 rs10864350 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3357.000000,1651.000000, 0.670327,0.329673, maf-5-some-pop,genotype-conflict 649 chr1 8397802 8397803 rs7520373 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3437.000000,1571.000000, 0.686302,0.313698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 649 chr1 8403010 8403011 rs6690548 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop 649 chr1 8423509 8423510 rs10779702 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 649 chr1 8425496 8425497 rs902357 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 71.000000,4937.000000,4937.000000,71.000000, 0.007089,0.492911,0.492911,0.007089, 649 chr1 8436130 8436131 rs17380831 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 649 chr1 8440056 8440057 rs17032511 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 649 chr1 8457622 8457623 rs1443929 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4178.000000,830.000000, 0.834265,0.165735, maf-5-some-pop 649 chr1 8468371 8468372 rs301791 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 649 chr1 8473812 8473813 rs12754538 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3501.000000,1507.000000, 0.699081,0.300919, maf-5-some-pop 649 chr1 8487322 8487323 rs301797 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1115.000000,3893.000000, 0.222644,0.777356, maf-5-some-pop 649 chr1 8487514 8487515 rs17032553 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,genotype-conflict 649 chr1 8490319 8490320 rs302719 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,AFFY_GWHS,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop,genotype-conflict 649 chr1 8490387 8490388 rs17032569 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop 649 chr1 8490602 8490603 rs301800 0 + T T C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4243.000000,765.000000, 0.847244,0.152756, maf-5-some-pop,genotype-conflict 649 chr1 8495518 8495519 rs17032575 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 649 chr1 8495589 8495590 rs172531 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop 649 chr1 8495944 8495945 rs301801 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop 649 chr1 8497306 8497307 rs301802 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 649 chr1 8499704 8499705 rs6694635 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 650 chr1 8522552 8522553 rs11121182 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 719.000000,4289.000000, 0.143570,0.856430, maf-5-some-pop,genotype-conflict 650 chr1 8526641 8526642 rs11806357 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,genotype-conflict 650 chr1 8529140 8529141 rs751790 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop 650 chr1 8540911 8540912 rs12568293 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 705.000000,4303.000000, 0.140775,0.859225, maf-5-some-pop,genotype-conflict 650 chr1 8544866 8544867 rs1884354 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 115.000000,4893.000000,4893.000000,115.000000, 0.011482,0.488518,0.488518,0.011482, maf-5-some-pop 650 chr1 8546913 8546914 rs2092861 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 276.000000,4732.000000,4732.000000,276.000000, 0.027556,0.472444,0.472444,0.027556, maf-5-some-pop,genotype-conflict 650 chr1 8574971 8574972 rs6577491 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1740.000000,3268.000000, 0.347444,0.652556, maf-5-some-pop,maf-5-all-pops 650 chr1 8581014 8581015 rs6656249 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop 650 chr1 8589850 8589851 rs12077062 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 650 chr1 8596741 8596742 rs17032657 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 650 chr1 8596892 8596893 rs1463051 0 - T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 650 chr1 8608105 8608106 rs926951 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 791.000000,4217.000000,4217.000000,791.000000, 0.078974,0.421026,0.421026,0.078974, maf-5-some-pop 650 chr1 8610504 8610505 rs4581300 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 819.000000,4189.000000,4189.000000,819.000000, 0.081769,0.418231,0.418231,0.081769, maf-5-some-pop,genotype-conflict 650 chr1 8612103 8612104 rs6577499 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 650 chr1 8631502 8631503 rs17032677 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,genotype-conflict 650 chr1 8634289 8634290 rs12122851 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop,maf-5-all-pops 650 chr1 8643439 8643440 rs11807092 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,genotype-conflict 650 chr1 8643496 8643497 rs17386406 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,genotype-conflict 650 chr1 8644006 8644007 rs7537982 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8652153 8652154 rs6675857 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 3515.000000,1493.000000, 0.701877,0.298123, maf-5-some-pop,genotype-conflict 651 chr1 8654304 8654305 rs11121204 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3131.000000,1877.000000, 0.625200,0.374800, maf-5-some-pop,maf-5-all-pops 651 chr1 8655494 8655495 rs7523186 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop,maf-5-all-pops 651 chr1 8663820 8663821 rs12136766 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8685036 8685037 rs6577506 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 807.000000,4201.000000, 0.161142,0.838858, maf-5-some-pop 651 chr1 8690902 8690903 rs17032714 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,genotype-conflict 651 chr1 8698609 8698610 rs10864359 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop,genotype-conflict 651 chr1 8702529 8702530 rs6679128 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 651 chr1 8704058 8704059 rs2401138 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3254.000000,1754.000000, 0.649760,0.350240, maf-5-some-pop,maf-5-all-pops 651 chr1 8705036 8705037 rs1463053 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2969.000000,2039.000000, 0.592851,0.407149, maf-5-some-pop,maf-5-all-pops 651 chr1 8726720 8726721 rs10864361 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3413.000000,1595.000000, 0.681510,0.318490, maf-5-some-pop,maf-5-all-pops 651 chr1 8728977 8728978 rs4908506 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 1928.000000,3080.000000, 0.384984,0.615016, maf-5-some-pop,maf-5-all-pops 651 chr1 8741400 8741401 rs7556169 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2051.000000,2957.000000, 0.409545,0.590455, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8741437 8741438 rs12122666 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 700.000000,4308.000000, 0.139776,0.860224, maf-5-some-pop 651 chr1 8751267 8751268 rs6658881 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 884.000000,4124.000000, 0.176518,0.823482, maf-5-some-pop 651 chr1 8755281 8755282 rs11121220 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 651 chr1 8759553 8759554 rs12025126 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1732.000000,3276.000000, 0.345847,0.654153, maf-5-some-pop,maf-5-all-pops,microattr-tpa 651 chr1 8767310 8767311 rs10864363 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 G,T, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop,genotype-conflict 651 chr1 8767528 8767529 rs11121221 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3911.000000,1097.000000, 0.780950,0.219050, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8767779 8767780 rs10864364 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop 651 chr1 8769679 8769680 rs12083728 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 651 chr1 8769727 8769728 rs4908773 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop 651 chr1 8770882 8770883 rs7553298 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop,maf-5-all-pops 651 chr1 8776923 8776924 rs17032752 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop,genotype-conflict 652 chr1 8794230 8794231 rs11804956 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM, 2 A,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 652 chr1 8804236 8804237 rs4908777 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4045.000000,963.000000, 0.807708,0.192292, maf-5-some-pop,maf-5-all-pops 652 chr1 8804887 8804888 rs4908778 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4079.000000,929.000000, 0.814497,0.185503, maf-5-some-pop,maf-5-all-pops 652 chr1 8806344 8806345 rs4908510 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 977.000000,4031.000000, 0.195088,0.804912, maf-5-some-pop,maf-5-all-pops,genotype-conflict 652 chr1 8808184 8808185 rs12024032 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 652 chr1 8808819 8808820 rs12567502 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop 652 chr1 8810340 8810341 rs10492963 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 833.000000,4175.000000,4175.000000,833.000000, 0.083167,0.416833,0.416833,0.083167, maf-5-some-pop 652 chr1 8812213 8812214 rs12028160 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2238.000000,2770.000000, 0.446885,0.553115, maf-5-some-pop,maf-5-all-pops 652 chr1 8812389 8812390 rs4908511 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2761.000000,2247.000000, 0.551318,0.448682, maf-5-some-pop,maf-5-all-pops 652 chr1 8828249 8828250 rs17032767 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,genotype-conflict 652 chr1 8831282 8831283 rs11121229 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop,maf-5-all-pops 652 chr1 8832498 8832499 rs10864366 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3772.000000,1236.000000, 0.753195,0.246805, maf-5-some-pop,genotype-conflict 652 chr1 8838527 8838528 rs12123076 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3937.000000,1071.000000, 0.786142,0.213858, maf-5-some-pop,genotype-conflict 652 chr1 8845198 8845199 rs11586056 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 587.000000,4421.000000, 0.117212,0.882788, maf-5-some-pop 652 chr1 8857103 8857104 rs6577525 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,genotype-conflict 652 chr1 8870875 8870876 rs7517436 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop 652 chr1 8871964 8871965 rs7546225 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3903.000000,1105.000000, 0.779353,0.220647, maf-5-some-pop 652 chr1 8876391 8876392 rs11121237 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop,maf-5-all-pops 652 chr1 8886421 8886422 rs6678590 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3813.000000,1195.000000, 0.761382,0.238618, maf-5-some-pop 652 chr1 8898806 8898807 rs11582339 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops 652 chr1 8899304 8899305 rs6577532 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1159.000000,3849.000000, 0.231430,0.768570, maf-5-some-pop 652 chr1 8903930 8903931 rs12124851 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop,genotype-conflict 652 chr1 8910346 8910347 rs12135416 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 829.000000,4179.000000, 0.165535,0.834465, maf-5-some-pop 652 chr1 8910704 8910705 rs6673587 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop 653 chr1 8918312 8918313 rs10864368 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop 653 chr1 8918794 8918795 rs11121247 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop 653 chr1 8925111 8925112 rs2765507 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 653 chr1 8930368 8930369 rs2781060 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1091.000000,3917.000000,3917.000000,1091.000000, 0.108926,0.391074,0.391074,0.108926, maf-5-some-pop 653 chr1 8931148 8931149 rs2274971 0 - C C A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1735.000000,3273.000000,3273.000000,1735.000000, 0.173223,0.326777,0.326777,0.173223, maf-5-some-pop 653 chr1 8931362 8931363 rs1006951 0 - G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 9 1000GENOMES,ABI,AFFY,EGP_SNPS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 653 chr1 8931462 8931463 rs1006950 0 - T T A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1222.000000,3786.000000,3786.000000,1222.000000, 0.122005,0.377995,0.377995,0.122005, maf-5-some-pop,genotype-conflict 653 chr1 8933241 8933242 rs6660137 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4246.000000,762.000000, 0.847843,0.152157, maf-5-some-pop 653 chr1 8964838 8964839 rs1572138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop,genotype-conflict 653 chr1 8968999 8969000 rs7526401 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1064.000000,3944.000000, 0.212460,0.787540, maf-5-some-pop,maf-5-all-pops 653 chr1 8969218 8969219 rs7534552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 653 chr1 8982905 8982906 rs4908796 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2477.000000,2531.000000, 0.494609,0.505391, maf-5-some-pop,maf-5-all-pops 653 chr1 8983654 8983655 rs11806366 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1778.000000,3230.000000, 0.355032,0.644968, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,genotype-conflict 653 chr1 8983767 8983768 rs11805233 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 2421.000000,2587.000000, 0.483427,0.516573, maf-5-some-pop,maf-5-all-pops 653 chr1 8985035 8985036 rs10864370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3698.000000,1310.000000, 0.738419,0.261581, maf-5-some-pop,maf-5-all-pops 653 chr1 8987258 8987259 rs2765512 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 653 chr1 8989234 8989235 rs6577539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop,genotype-conflict 653 chr1 8990310 8990311 rs914999 0 + G G C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 653 chr1 8991115 8991116 rs2781079 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1622.000000,3386.000000, 0.323882,0.676118, maf-5-some-pop 653 chr1 8991140 8991141 rs4609454 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2286.000000,2722.000000, 0.456470,0.543530, maf-5-some-pop,maf-5-all-pops 653 chr1 8993691 8993692 rs11121271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2067.000000,2941.000000, 0.412740,0.587260, maf-5-some-pop,maf-5-all-pops 653 chr1 8993866 8993867 rs7417097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1728.000000,3280.000000, 0.345048,0.654952, maf-5-some-pop,maf-5-all-pops 653 chr1 8994111 8994112 rs4418632 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops 653 chr1 8994466 8994467 rs9435064 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1608.000000,3400.000000, 0.321086,0.678914, maf-5-some-pop,maf-5-all-pops 653 chr1 9003177 9003178 rs6684149 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop 653 chr1 9003396 9003397 rs17032887 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop 653 chr1 9005268 9005269 rs11809994 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,genotype-conflict 653 chr1 9005319 9005320 rs1409147 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop,genotype-conflict 653 chr1 9007555 9007556 rs942969 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 3774.000000,1234.000000, 0.753594,0.246406, maf-5-some-pop,maf-5-all-pops 653 chr1 9008738 9008739 rs12070475 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1673.000000,3335.000000, 0.334065,0.665935, maf-5-some-pop,maf-5-all-pops 653 chr1 9008943 9008944 rs10864372 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3343.000000,1665.000000, 0.667532,0.332468, maf-5-some-pop,maf-5-all-pops 653 chr1 9009405 9009406 rs2274327 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 23 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BSBIO,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,genotype-conflict 653 chr1 9009705 9009706 rs12738365 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3414.000000,1594.000000, 0.681709,0.318291, maf-5-some-pop,maf-5-all-pops 653 chr1 9011626 9011627 rs3765967 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 680.000000,4328.000000,4328.000000,680.000000, 0.067891,0.432109,0.432109,0.067891, maf-5-some-pop,maf-5-all-pops,genotype-conflict 653 chr1 9012690 9012691 rs12061961 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 653 chr1 9017090 9017091 rs2274332 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SI_EXO,SSMP,YUSUKE, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,maf-5-all-pops 653 chr1 9017203 9017204 rs2274333 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 27 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3286.000000,1722.000000, 0.656150,0.343850, maf-5-some-pop,maf-5-all-pops 653 chr1 9018033 9018034 rs7545200 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1944.000000,3064.000000, 0.388179,0.611821, maf-5-some-pop,genotype-conflict 653 chr1 9018930 9018931 rs12061974 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,TISHKOFF, 2 A,G, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 653 chr1 9027390 9027391 rs4466678 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop 653 chr1 9036013 9036014 rs12564569 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop 653 chr1 9036613 9036614 rs12127547 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop 653 chr1 9037272 9037273 rs6697763 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,genotype-conflict 653 chr1 9039021 9039022 rs6577546 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 653 chr1 9039703 9039704 rs6680186 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 653 chr1 9042622 9042623 rs11808275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,TISHKOFF, 2 A,G, 49.000000,4959.000000, 0.009784,0.990216, maf-5-some-pop 654 chr1 9045123 9045124 rs7513804 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1357.000000,3651.000000, 0.270966,0.729034, maf-5-some-pop,maf-5-all-pops 654 chr1 9054048 9054049 rs11121289 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 654 chr1 9054583 9054584 rs10746482 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2038.000000,2970.000000, 0.406949,0.593051, maf-5-some-pop,maf-5-all-pops 654 chr1 9060169 9060170 rs4908803 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2925.000000,2083.000000, 0.584065,0.415935, maf-5-some-pop,genotype-conflict 654 chr1 9060209 9060210 rs17392147 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop 654 chr1 9061041 9061042 rs7547865 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop 654 chr1 9061160 9061161 rs7516862 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 551.000000,4457.000000, 0.110024,0.889976, maf-5-some-pop 654 chr1 9062951 9062952 rs17389948 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop,genotype-conflict 654 chr1 9067659 9067660 rs17033021 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop 654 chr1 9067673 9067674 rs17033022 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 654 chr1 9068052 9068053 rs17027181 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 654 chr1 9068212 9068213 rs17027186 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,genotype-conflict 654 chr1 9068385 9068386 rs7530465 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1498.000000,3510.000000, 0.299121,0.700879, maf-5-some-pop,maf-5-all-pops 654 chr1 9072772 9072773 rs12076084 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3151.000000,1857.000000, 0.629193,0.370807, maf-5-some-pop,maf-5-all-pops 654 chr1 9074464 9074465 rs12063980 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop,genotype-conflict 654 chr1 9079153 9079154 rs12031065 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3020.000000,1988.000000, 0.603035,0.396965, maf-5-some-pop 654 chr1 9080965 9080966 rs769902 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3396.000000,1612.000000,1612.000000,3396.000000, 0.339058,0.160942,0.160942,0.339058, maf-5-some-pop,maf-5-all-pops 654 chr1 9084923 9084924 rs2027222 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 916.000000,4092.000000,4092.000000,916.000000, 0.091454,0.408546,0.408546,0.091454, maf-5-some-pop,genotype-conflict 654 chr1 9093808 9093809 rs6667506 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 2630.000000,2378.000000, 0.525160,0.474840, maf-5-some-pop,maf-5-all-pops 654 chr1 9094530 9094531 rs707452 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 654 chr1 9095493 9095494 rs10864381 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2381.000000,2627.000000, 0.475439,0.524561, maf-5-some-pop,maf-5-all-pops 654 chr1 9098229 9098230 rs875996 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 708.000000,4300.000000,4300.000000,708.000000, 0.070687,0.429313,0.429313,0.070687, maf-5-some-pop 654 chr1 9098271 9098272 rs875995 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1443.000000,3565.000000,3565.000000,1443.000000, 0.144069,0.355931,0.355931,0.144069, maf-5-some-pop,maf-5-all-pops 654 chr1 9102956 9102957 rs4908526 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2560.000000,2448.000000, 0.511182,0.488818, maf-5-some-pop,maf-5-all-pops 654 chr1 9114090 9114091 rs7521322 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2539.000000,2469.000000, 0.506989,0.493011, maf-5-some-pop,maf-5-all-pops 654 chr1 9116742 9116743 rs12080175 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1665.000000,3343.000000, 0.332468,0.667532, maf-5-some-pop 654 chr1 9116898 9116899 rs2505972 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2708.000000,2300.000000, 0.540735,0.459265, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9118422 9118423 rs17842190 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop 654 chr1 9119027 9119028 rs6694527 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 654 chr1 9122556 9122557 rs1612895 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1910.000000,3098.000000, 0.381390,0.618610, maf-5-some-pop 654 chr1 9127457 9127458 rs3765962 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 654 chr1 9138466 9138467 rs11121317 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 1495.000000,3513.000000, 0.298522,0.701478, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9138889 9138890 rs1327257 0 + A A A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 3 A,G,T, 4052.000000,942.000000,14.000000, 0.809105,0.188099,0.002796, maf-5-some-pop 654 chr1 9140077 9140078 rs12726360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1503.000000,3505.000000, 0.300120,0.699880, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9143331 9143332 rs770036 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 654 chr1 9145012 9145013 rs12057692 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1687.000000,3321.000000, 0.336861,0.663139, maf-5-some-pop,maf-5-all-pops 654 chr1 9146291 9146292 rs12402657 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 974.000000,4034.000000, 0.194489,0.805511, maf-5-some-pop 654 chr1 9150870 9150871 rs11487892 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop 654 chr1 9151324 9151325 rs12080794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4129.000000,879.000000, 0.824481,0.175519, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 654 chr1 9151749 9151750 rs11121320 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop,maf-5-all-pops 654 chr1 9158764 9158765 rs1751670 0 + A A A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 24 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,genotype-conflict 654 chr1 9158996 9158997 rs729829 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, 2 C,T, 2710.000000,2298.000000, 0.541134,0.458866, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9164132 9164133 rs3737669 0 - G G C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2466.000000,2542.000000,2542.000000,2466.000000, 0.246206,0.253794,0.253794,0.246206, maf-5-some-pop 654 chr1 9166343 9166344 rs6693258 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 654 chr1 9170877 9170878 rs770028 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 769.000000,4239.000000,4239.000000,769.000000, 0.076777,0.423223,0.423223,0.076777, maf-5-some-pop 655 chr1 9177316 9177317 rs1705299 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 788.000000,4220.000000,4220.000000,788.000000, 0.078674,0.421326,0.421326,0.078674, maf-5-some-pop 655 chr1 9190253 9190254 rs12726928 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 655 chr1 9197460 9197461 rs6577553 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop 655 chr1 9205672 9205673 rs4243826 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 823.000000,4185.000000, 0.164337,0.835663, maf-5-some-pop,genotype-conflict 655 chr1 9213176 9213177 rs2666433 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1300.000000,3708.000000,3708.000000,1300.000000, 0.129792,0.370208,0.370208,0.129792, maf-5-some-pop,maf-5-all-pops 655 chr1 9218720 9218721 rs12119878 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 655 chr1 9219382 9219383 rs6577556 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,genotype-conflict 655 chr1 9223159 9223160 rs797252 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4603.000000,405.000000,405.000000,4603.000000, 0.459565,0.040435,0.040435,0.459565, maf-5-some-pop 655 chr1 9225183 9225184 rs2516091 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2780.000000,2228.000000,2228.000000,2780.000000, 0.277556,0.222444,0.222444,0.277556, maf-5-some-pop,maf-5-all-pops 655 chr1 9228623 9228624 rs11802925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 946.000000,4062.000000, 0.188898,0.811102, maf-5-some-pop,genotype-conflict 655 chr1 9234142 9234143 rs4908527 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3053.000000,1955.000000, 0.609625,0.390375, maf-5-some-pop,maf-5-all-pops 655 chr1 9234362 9234363 rs809972 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3814.000000,1194.000000, 0.761581,0.238419, maf-5-some-pop 655 chr1 9240257 9240258 rs6669897 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop 655 chr1 9245571 9245572 rs4908817 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,genotype-conflict 655 chr1 9248876 9248877 rs744900 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1796.000000,3212.000000,3212.000000,1796.000000, 0.179313,0.320687,0.320687,0.179313, maf-5-some-pop,maf-5-all-pops 655 chr1 9250855 9250856 rs2157480 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3197.000000,1811.000000,1811.000000,3197.000000, 0.319189,0.180811,0.180811,0.319189, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9250990 9250991 rs10864392 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3397.000000,1611.000000, 0.678315,0.321685, maf-5-some-pop,maf-5-all-pops 655 chr1 9260899 9260900 rs743973 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3261.000000,1747.000000, 0.651158,0.348842, maf-5-some-pop,maf-5-all-pops 655 chr1 9260940 9260941 rs737261 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 655 chr1 9267586 9267587 rs17033446 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop 655 chr1 9267708 9267709 rs9435127 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 655 chr1 9267899 9267900 rs9434717 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3417.000000,1591.000000, 0.682308,0.317692, maf-5-some-pop,maf-5-all-pops 655 chr1 9274445 9274446 rs6577561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1739.000000,3269.000000, 0.347244,0.652756, maf-5-some-pop,maf-5-all-pops 655 chr1 9275193 9275194 rs1009941 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2477.000000,2531.000000,2531.000000,2477.000000, 0.247304,0.252696,0.252696,0.247304, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9278141 9278142 rs1009940 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2221.000000,2787.000000,2787.000000,2221.000000, 0.221745,0.278255,0.278255,0.221745, maf-5-some-pop,maf-5-all-pops 655 chr1 9280172 9280173 rs17033526 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 655 chr1 9280647 9280648 rs7534423 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 655 chr1 9281715 9281716 rs12402600 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 655 chr1 9285720 9285721 rs10489436 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 3603.000000,1405.000000,1405.000000,3603.000000, 0.359724,0.140276,0.140276,0.359724, maf-5-some-pop,maf-5-all-pops 655 chr1 9286017 9286018 rs12072683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3193.000000,1815.000000, 0.637580,0.362420, maf-5-some-pop,maf-5-all-pops 655 chr1 9291035 9291036 rs2157479 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3788.000000,1220.000000,1220.000000,3788.000000, 0.378195,0.121805,0.121805,0.378195, maf-5-some-pop,maf-5-all-pops 655 chr1 9292081 9292082 rs3753271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3844.000000,1164.000000, 0.767572,0.232428, maf-5-some-pop,maf-5-all-pops 655 chr1 9292281 9292282 rs9434723 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9304204 9304205 rs2239561 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3605.000000,1403.000000,1403.000000,3605.000000, 0.359924,0.140076,0.140076,0.359924, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9304730 9304731 rs2239560 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 979.000000,4029.000000,4029.000000,979.000000, 0.097744,0.402256,0.402256,0.097744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9308036 9308037 rs9435151 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 656 chr1 9315846 9315847 rs2268170 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 867.000000,4141.000000,4141.000000,867.000000, 0.086562,0.413438,0.413438,0.086562, maf-5-some-pop,genotype-conflict 656 chr1 9327412 9327413 rs11121354 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop 656 chr1 9330478 9330479 rs11121356 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,TISHKOFF, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop 656 chr1 9331951 9331952 rs9435168 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1972.000000,3036.000000, 0.393770,0.606230, maf-5-some-pop,microattr-tpa,genotype-conflict 656 chr1 9331972 9331973 rs2097520 0 - C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 656 chr1 9332702 9332703 rs7517538 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2184.000000,2824.000000, 0.436102,0.563898, maf-5-some-pop,maf-5-all-pops 656 chr1 9334713 9334714 rs12093524 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 1783.000000,3225.000000, 0.356030,0.643970, maf-5-some-pop,maf-5-all-pops 656 chr1 9335744 9335745 rs6688233 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop,maf-5-all-pops 656 chr1 9339204 9339205 rs11590326 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop 656 chr1 9344414 9344415 rs11803236 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9355896 9355897 rs2075973 0 - A A C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3568.000000,1440.000000,1440.000000,3568.000000, 0.356230,0.143770,0.143770,0.356230, maf-5-some-pop 656 chr1 9355935 9355936 rs9442514 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1354.000000,3654.000000,3654.000000,1354.000000, 0.135184,0.364816,0.364816,0.135184, maf-5-some-pop 656 chr1 9356064 9356065 rs2072734 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3790.000000,1218.000000,1218.000000,3790.000000, 0.378395,0.121605,0.121605,0.378395, maf-5-some-pop,maf-5-all-pops 656 chr1 9357723 9357724 rs11121365 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 656 chr1 9357959 9357960 rs563347 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4548.000000,460.000000, 0.908147,0.091853, maf-5-some-pop 656 chr1 9358242 9358243 rs621846 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2784.000000,2224.000000,2224.000000,2784.000000, 0.277955,0.222045,0.222045,0.277955, maf-5-some-pop,maf-5-all-pops 656 chr1 9360207 9360208 rs1294035 0 - G G C/T genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 465.000000,4543.000000,4543.000000,465.000000, 0.046426,0.453574,0.453574,0.046426, maf-5-some-pop,maf-5-all-pops 656 chr1 9362340 9362341 rs9662290 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9364633 9364634 rs1294028 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1605.000000,3403.000000,3403.000000,1605.000000, 0.160244,0.339756,0.339756,0.160244, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9368135 9368136 rs17377443 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,genotype-conflict 656 chr1 9368208 9368209 rs1294040 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3217.000000,1791.000000,1791.000000,3217.000000, 0.321186,0.178814,0.178814,0.321186, maf-5-some-pop,maf-5-all-pops 656 chr1 9370382 9370383 rs1294054 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 304.000000,4704.000000,4704.000000,304.000000, 0.030351,0.469649,0.469649,0.030351, maf-5-some-pop 656 chr1 9370910 9370911 rs630075 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2526.000000,2482.000000,2482.000000,2526.000000, 0.252196,0.247804,0.247804,0.252196, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9375308 9375309 rs9726646 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3332.000000,1676.000000, 0.665335,0.334665, maf-5-some-pop,maf-5-all-pops 656 chr1 9380245 9380246 rs12077625 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop 656 chr1 9381481 9381482 rs17377597 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 656 chr1 9382033 9382034 rs1294055 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 516.000000,4492.000000,4492.000000,516.000000, 0.051518,0.448482,0.448482,0.051518, maf-5-some-pop 656 chr1 9382284 9382285 rs564709 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4266.000000,742.000000,742.000000,4266.000000, 0.425919,0.074081,0.074081,0.425919, maf-5-some-pop 656 chr1 9382468 9382469 rs9660159 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 472.000000,4536.000000, 0.094249,0.905751, maf-5-some-pop,genotype-conflict 656 chr1 9387310 9387311 rs4908842 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2057.000000,2951.000000, 0.410743,0.589257, maf-5-some-pop,maf-5-all-pops 656 chr1 9387358 9387359 rs4908843 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops 656 chr1 9387443 9387444 rs1569422 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4230.000000,778.000000,778.000000,4230.000000, 0.422324,0.077676,0.077676,0.422324, maf-5-some-pop,maf-5-all-pops 656 chr1 9388077 9388078 rs11590191 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 656 chr1 9388653 9388654 rs9651158 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,genotype-conflict 656 chr1 9389217 9389218 rs732591 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3570.000000,1438.000000,1438.000000,3570.000000, 0.356430,0.143570,0.143570,0.356430, maf-5-some-pop,maf-5-all-pops 656 chr1 9392087 9392088 rs1294023 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1043.000000,3965.000000,3965.000000,1043.000000, 0.104133,0.395867,0.395867,0.104133, maf-5-some-pop,maf-5-all-pops 656 chr1 9394007 9394008 rs926247 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1434.000000,3574.000000,3574.000000,1434.000000, 0.143171,0.356829,0.356829,0.143171, maf-5-some-pop 656 chr1 9402402 9402403 rs478103 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop 656 chr1 9404692 9404693 rs41526651 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4824.000000,184.000000,184.000000,4824.000000, 0.481629,0.018371,0.018371,0.481629, maf-5-some-pop 656 chr1 9405016 9405017 rs544264 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 630.000000,4378.000000,4378.000000,630.000000, 0.062899,0.437101,0.437101,0.062899, maf-5-some-pop 656 chr1 9406978 9406979 rs2075972 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3373.000000,1635.000000,1635.000000,3373.000000, 0.336761,0.163239,0.163239,0.336761, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9408958 9408959 rs11121380 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop,microattr-tpa 656 chr1 9411468 9411469 rs11121382 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,microattr-tpa,genotype-conflict 656 chr1 9415008 9415009 rs733893 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3703.000000,1305.000000,1305.000000,3703.000000, 0.369708,0.130292,0.130292,0.369708, maf-5-some-pop,maf-5-all-pops 656 chr1 9416851 9416852 rs12760778 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9416961 9416962 rs4908852 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2313.000000,2695.000000, 0.461861,0.538139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9417945 9417946 rs9435244 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 706.000000,4302.000000, 0.140974,0.859026, maf-5-some-pop,genotype-conflict 656 chr1 9419289 9419290 rs9435245 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 656 chr1 9419321 9419322 rs11121387 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 656 chr1 9420540 9420541 rs4908854 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop 656 chr1 9422434 9422435 rs11121389 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop 656 chr1 9422874 9422875 rs552230 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1568.000000,3440.000000,3440.000000,1568.000000, 0.156550,0.343450,0.343450,0.156550, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9422976 9422977 rs553161 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 809.000000,4199.000000,4199.000000,809.000000, 0.080771,0.419229,0.419229,0.080771, maf-5-some-pop 656 chr1 9425539 9425540 rs10864411 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3087.000000,1921.000000, 0.616414,0.383586, maf-5-some-pop,maf-5-all-pops 656 chr1 9427795 9427796 rs11121390 0 + G G A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop,maf-5-all-pops 656 chr1 9427841 9427842 rs2275458 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SEQUENOM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3238.000000,1770.000000,1770.000000,3238.000000, 0.323283,0.176717,0.176717,0.323283, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9432161 9432162 rs9660866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 656 chr1 9432389 9432390 rs9308447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,maf-5-all-pops,microattr-tpa 656 chr1 9432910 9432911 rs17393334 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9436537 9436538 rs4596926 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2155.000000,2853.000000, 0.430312,0.569688, maf-5-some-pop,maf-5-all-pops 657 chr1 9438539 9438540 rs17393468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop 657 chr1 9441039 9441040 rs9729149 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2938.000000,2070.000000, 0.586661,0.413339, maf-5-some-pop,maf-5-all-pops 657 chr1 9441105 9441106 rs12077805 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 657 chr1 9441163 9441164 rs2311018 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 441.000000,4567.000000,4567.000000,441.000000, 0.044030,0.455970,0.455970,0.044030, maf-5-some-pop 657 chr1 9454066 9454067 rs12137140 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3683.000000,1325.000000, 0.735423,0.264577, maf-5-some-pop,maf-5-all-pops 657 chr1 9466291 9466292 rs11121406 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1767.000000,3241.000000, 0.352835,0.647165, maf-5-some-pop,maf-5-all-pops 657 chr1 9466802 9466803 rs12044809 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop 657 chr1 9483387 9483388 rs12145857 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 595.000000,4413.000000, 0.118810,0.881190, maf-5-some-pop 657 chr1 9489405 9489406 rs12405873 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 657 chr1 9489971 9489972 rs10864418 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3343.000000,1665.000000, 0.667532,0.332468, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9490338 9490339 rs11121412 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2713.000000,2295.000000, 0.541733,0.458267, maf-5-some-pop,maf-5-all-pops 657 chr1 9495586 9495587 rs9726405 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 657 chr1 9498112 9498113 rs9660890 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9499245 9499246 rs9787285 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop,genotype-conflict 657 chr1 9500639 9500640 rs9662275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop,maf-5-all-pops 657 chr1 9501491 9501492 rs9662546 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop,maf-5-all-pops 657 chr1 9502484 9502485 rs11121421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 657 chr1 9506274 9506275 rs9661728 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops 657 chr1 9507003 9507004 rs10735516 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9508954 9508955 rs12034064 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 978.000000,4030.000000, 0.195288,0.804712, maf-5-some-pop,genotype-conflict 657 chr1 9509781 9509782 rs10779725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1569.000000,3439.000000, 0.313299,0.686701, maf-5-some-pop,maf-5-all-pops 657 chr1 9509820 9509821 rs10779726 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 657 chr1 9526978 9526979 rs10864425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2230.000000,2778.000000, 0.445288,0.554712, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9538653 9538654 rs12561781 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 2459.000000,2549.000000, 0.491014,0.508986, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9546954 9546955 rs12062430 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 657 chr1 9549327 9549328 rs12735814 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop 657 chr1 9556060 9556061 rs7413464 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3396.000000,1612.000000, 0.678115,0.321885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9559062 9559063 rs7415831 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1253.000000,3755.000000, 0.250200,0.749800, maf-5-some-pop,maf-5-all-pops 657 chr1 9565399 9565400 rs7539774 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 658 chr1 9571421 9571422 rs7542011 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop,genotype-conflict 658 chr1 9580650 9580651 rs12076872 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop 658 chr1 9589412 9589413 rs7521288 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 658 chr1 9613870 9613871 rs6664362 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 658 chr1 9624284 9624285 rs9430274 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3456.000000,1552.000000, 0.690096,0.309904, maf-5-some-pop,maf-5-all-pops,genotype-conflict 658 chr1 9637590 9637591 rs9430155 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop,genotype-conflict 658 chr1 9647136 9647137 rs9430174 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, maf-5-some-pop,maf-5-all-pops 658 chr1 9650570 9650571 rs6669846 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,genotype-conflict 658 chr1 9654196 9654197 rs7544083 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop,maf-5-all-pops 658 chr1 9655794 9655795 rs4073710 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop,genotype-conflict 658 chr1 9656446 9656447 rs4074745 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 139.000000,4869.000000,4869.000000,139.000000, 0.013878,0.486122,0.486122,0.013878, maf-5-some-pop 658 chr1 9656570 9656571 rs4074744 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 4 A,C,G,T, 3408.000000,1600.000000,1600.000000,3408.000000, 0.340256,0.159744,0.159744,0.340256, maf-5-some-pop,maf-5-all-pops 658 chr1 9673045 9673046 rs11799995 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 658 chr1 9677001 9677002 rs6540967 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 893.000000,4115.000000, 0.178315,0.821685, maf-5-some-pop,maf-5-all-pops 658 chr1 9677852 9677853 rs10779727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3563.000000,1445.000000, 0.711462,0.288538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 658 chr1 9698261 9698262 rs11121466 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop,maf-5-all-pops 658 chr1 9698332 9698333 rs11121467 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1828.000000,3180.000000, 0.365016,0.634984, maf-5-some-pop,maf-5-all-pops 659 chr1 9699376 9699377 rs9430544 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2974.000000,2034.000000, 0.593850,0.406150, maf-5-some-pop,maf-5-all-pops 659 chr1 9699767 9699768 rs12028233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2041.000000,2967.000000, 0.407548,0.592452, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9713499 9713500 rs4240896 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3396.000000,1612.000000, 0.678115,0.321885, maf-5-some-pop,maf-5-all-pops 659 chr1 9722522 9722523 rs6666059 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 1668.000000,3340.000000, 0.333067,0.666933, maf-5-some-pop,maf-5-all-pops 659 chr1 9725524 9725525 rs4300218 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 409.000000,4599.000000, 0.081669,0.918331, maf-5-some-pop 659 chr1 9731336 9731337 rs12730387 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 659 chr1 9732865 9732866 rs12092982 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop 659 chr1 9732910 9732911 rs11802023 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop 659 chr1 9733220 9733221 rs11121472 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2142.000000,2866.000000, 0.427716,0.572284, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9738785 9738786 rs9430635 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 659 chr1 9738878 9738879 rs4846189 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 659 chr1 9750456 9750457 rs4240910 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2540.000000,2468.000000, 0.507188,0.492812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9755272 9755273 rs11801864 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 659 chr1 9771563 9771564 rs6541017 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop 659 chr1 9782555 9782556 rs11589267 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA, 2 C,T, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop 659 chr1 9784422 9784423 rs11121484 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WIPGA, 2 C,T, 3476.000000,1532.000000, 0.694089,0.305911, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9794304 9794305 rs12568720 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3470.000000,1538.000000, 0.692891,0.307109, maf-5-some-pop 659 chr1 9801340 9801341 rs10864436 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 947.000000,4061.000000, 0.189097,0.810903, maf-5-some-pop,maf-5-all-pops 659 chr1 9811434 9811435 rs10779731 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3458.000000,1550.000000, 0.690495,0.309505, maf-5-some-pop,maf-5-all-pops 660 chr1 9832931 9832932 rs12034109 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop 660 chr1 9881111 9881112 rs1619083 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 166.000000,4842.000000,4842.000000,166.000000, 0.016573,0.483427,0.483427,0.016573, maf-5-some-pop 660 chr1 9897000 9897001 rs12032209 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3834.000000,1174.000000, 0.765575,0.234425, maf-5-some-pop,maf-5-all-pops 660 chr1 9902127 9902128 rs1933734 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop,maf-5-all-pops,genotype-conflict 660 chr1 9902899 9902900 rs10864439 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2183.000000,2825.000000, 0.435903,0.564097, maf-5-some-pop,maf-5-all-pops,genotype-conflict 660 chr1 9908481 9908482 rs15177 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BGI,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop,genotype-conflict 660 chr1 9923740 9923741 rs935073 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3223.000000,1785.000000, 0.643570,0.356430, maf-5-some-pop,maf-5-all-pops 660 chr1 9924944 9924945 rs3860318 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 660 chr1 9926019 9926020 rs7537879 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop,genotype-conflict 660 chr1 9926228 9926229 rs1220412 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1942.000000,3066.000000, 0.387780,0.612220, maf-5-some-pop,maf-5-all-pops 660 chr1 9930959 9930960 rs7541300 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop 660 chr1 9937040 9937041 rs12128766 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4116.000000,892.000000, 0.821885,0.178115, maf-5-some-pop 660 chr1 9937588 9937589 rs7549820 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 660 chr1 9940892 9940893 rs4417070 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,T, 701.000000,4307.000000, 0.139976,0.860024, maf-5-some-pop,maf-5-all-pops 660 chr1 9941035 9941036 rs4636465 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop 660 chr1 9950139 9950140 rs946276 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 271.000000,4737.000000,4737.000000,271.000000, 0.027057,0.472943,0.472943,0.027057, maf-5-some-pop,genotype-conflict 661 chr1 9973927 9973928 rs1220388 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 661 chr1 9984878 9984879 rs12097182 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4511.000000,497.000000, 0.900759,0.099241, maf-5-some-pop 661 chr1 9994338 9994339 rs1220398 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1740.000000,3268.000000, 0.347444,0.652556, maf-5-some-pop,maf-5-all-pops 661 chr1 9994844 9994845 rs2304778 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,YUSUKE, 2 C,T, 5000.000000,8.000000, 0.998403,0.001597, genotype-conflict 661 chr1 10003319 10003320 rs1234694 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops 661 chr1 10013013 10013014 rs7516611 0 + A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4128.000000,880.000000, 0.824281,0.175719, maf-5-some-pop,maf-5-all-pops,genotype-conflict 661 chr1 10023194 10023195 rs12071307 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 739.000000,4269.000000, 0.147564,0.852436, maf-5-some-pop 661 chr1 10023292 10023293 rs6541073 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2813.000000,2195.000000, 0.561701,0.438299, maf-5-some-pop,maf-5-all-pops 661 chr1 10027539 10027540 rs2890358 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2658.000000,2350.000000, 0.530751,0.469249, maf-5-some-pop,maf-5-all-pops 661 chr1 10029912 10029913 rs6683452 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1381.000000,3627.000000, 0.275759,0.724241, maf-5-some-pop,maf-5-all-pops 661 chr1 10031305 10031306 rs11121507 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4756.000000,252.000000, 0.949681,0.050319, maf-5-some-pop 661 chr1 10049176 10049177 rs12140058 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops 661 chr1 10068174 10068175 rs11578833 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 662 chr1 10106774 10106775 rs12406448 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop 662 chr1 10134225 10134226 rs17034493 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 662 chr1 10134526 10134527 rs7538285 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 662 chr1 10155282 10155283 rs9430244 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 760.000000,4248.000000, 0.151757,0.848243, maf-5-some-pop,maf-5-all-pops,genotype-conflict 662 chr1 10165300 10165301 rs12076922 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 662 chr1 10195969 10195970 rs6685910 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,T, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop 662 chr1 10197611 10197612 rs6687550 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 662 chr1 10209418 10209419 rs12076005 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 662 chr1 10209556 10209557 rs6696978 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop 662 chr1 10218376 10218377 rs2273298 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3180.000000,1828.000000, 0.634984,0.365016, maf-5-some-pop 662 chr1 10218438 10218439 rs2273299 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 26 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 1832.000000,3176.000000, 0.365815,0.634185, maf-5-some-pop,maf-5-all-pops 662 chr1 10223004 10223005 rs17034544 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop,maf-5-all-pops 663 chr1 10224692 10224693 rs17034545 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop 663 chr1 10228527 10228528 rs17034558 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop 663 chr1 10229157 10229158 rs17034560 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1082.000000,3926.000000, 0.216054,0.783946, maf-5-some-pop 663 chr1 10231462 10231463 rs12092513 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3720.000000,1288.000000, 0.742812,0.257188, maf-5-some-pop,maf-5-all-pops,microattr-tpa 663 chr1 10232123 10232124 rs9782938 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,G, 484.000000,4524.000000, 0.096645,0.903355, maf-5-some-pop 663 chr1 10232199 10232200 rs17034569 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,genotype-conflict 663 chr1 10232533 10232534 rs11121524 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,genotype-conflict 663 chr1 10236038 10236039 rs6541080 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2396.000000,2612.000000, 0.478435,0.521565, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10236401 10236402 rs7418410 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10244271 10244272 rs11806619 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 663 chr1 10246128 10246129 rs2180185 0 - G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 663 chr1 10249962 10249963 rs7522819 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 663 chr1 10281683 10281684 rs6671413 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 663 chr1 10282185 10282186 rs4846198 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1981.000000,3027.000000, 0.395567,0.604433, maf-5-some-pop,genotype-conflict 663 chr1 10296517 10296518 rs12069853 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 663 chr1 10307452 10307453 rs4240911 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1698.000000,3310.000000, 0.339058,0.660942, maf-5-some-pop,maf-5-all-pops 663 chr1 10308630 10308631 rs946503 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 663 chr1 10309579 10309580 rs946501 0 - G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 663 chr1 10311876 10311877 rs17034615 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop 663 chr1 10311982 10311983 rs12407992 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops 663 chr1 10326183 10326184 rs12064209 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,G, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 663 chr1 10326962 10326963 rs9332414 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3387.000000,1621.000000, 0.676318,0.323682, maf-5-some-pop,maf-5-all-pops 663 chr1 10332101 10332102 rs17034643 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3347.000000,1661.000000, 0.668331,0.331669, maf-5-some-pop,maf-5-all-pops 663 chr1 10341994 10341995 rs17034655 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 663 chr1 10342168 10342169 rs6541088 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,ILLUMINA,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 663 chr1 10345324 10345325 rs12120042 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops 663 chr1 10345461 10345462 rs17397129 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4515.000000,493.000000, 0.901558,0.098443, maf-5-some-pop,genotype-conflict 663 chr1 10345771 10345772 rs12120191 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1642.000000,3366.000000, 0.327875,0.672125, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10346809 10346810 rs746881 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3385.000000,1623.000000, 0.675919,0.324081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10348711 10348712 rs912962 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2323.000000,2685.000000,2685.000000,2323.000000, 0.231929,0.268071,0.268071,0.231929, maf-5-some-pop,maf-5-all-pops 663 chr1 10353111 10353112 rs10492972 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1629.000000,3379.000000, 0.325280,0.674720, clinically-assoc,maf-5-some-pop,has-omim-omia,microattr-tpa 664 chr1 10357405 10357406 rs3748577 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 664 chr1 10385470 10385471 rs17401966 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3843.000000,1165.000000, 0.767372,0.232628, clinically-assoc,maf-5-some-pop,has-omim-omia,microattr-tpa 664 chr1 10386641 10386642 rs17034735 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 664 chr1 10386881 10386882 rs17034738 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,genotype-conflict 664 chr1 10387703 10387704 rs4333852 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops 664 chr1 10387787 10387788 rs4475756 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops 664 chr1 10391535 10391536 rs12734551 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1194.000000,3814.000000, 0.238419,0.761581, maf-5-some-pop,maf-5-all-pops 664 chr1 10397898 10397899 rs17034762 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 664 chr1 10400601 10400602 rs1555849 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3337.000000,1671.000000,1671.000000,3337.000000, 0.333167,0.166833,0.166833,0.333167, maf-5-some-pop,maf-5-all-pops 664 chr1 10400989 10400990 rs1556917 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1704.000000,3304.000000,3304.000000,1704.000000, 0.170128,0.329872,0.329872,0.170128, maf-5-some-pop,maf-5-all-pops 664 chr1 10404182 10404183 rs11121543 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,genotype-conflict 664 chr1 10413122 10413123 rs1467653 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2634.000000,2374.000000,2374.000000,2634.000000, 0.262979,0.237021,0.237021,0.262979, maf-5-some-pop,maf-5-all-pops,genotype-conflict 664 chr1 10420917 10420918 rs3748578 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1457.000000,3551.000000, 0.290935,0.709065, maf-5-some-pop,maf-5-all-pops,genotype-conflict 664 chr1 10421877 10421878 rs12125492 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 664 chr1 10447791 10447792 rs4846216 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 664 chr1 10454501 10454502 rs6679596 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop 664 chr1 10454772 10454773 rs6682868 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2637.000000,2371.000000, 0.526558,0.473442, maf-5-some-pop,maf-5-all-pops 664 chr1 10458377 10458378 rs6674843 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop,maf-5-all-pops 664 chr1 10458438 10458439 rs6670157 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4327.000000,681.000000, 0.864018,0.135982, maf-5-some-pop 664 chr1 10484415 10484416 rs663364 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop,maf-5-all-pops 664 chr1 10485018 10485019 rs2483679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2503.000000,2505.000000, 0.499800,0.500200, maf-5-some-pop,maf-5-all-pops 665 chr1 10488313 10488314 rs505141 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2131.000000,2877.000000, 0.425519,0.574481, maf-5-some-pop,maf-5-all-pops 665 chr1 10488554 10488555 rs528713 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1981.000000,3027.000000, 0.395567,0.604433, maf-5-some-pop,maf-5-all-pops 665 chr1 10493414 10493415 rs597441 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2654.000000,2354.000000, 0.529952,0.470048, maf-5-some-pop,maf-5-all-pops 665 chr1 10502709 10502710 rs2847337 0 - A A C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 898.000000,4110.000000,4110.000000,898.000000, 0.089657,0.410343,0.410343,0.089657, maf-5-some-pop 665 chr1 10508135 10508136 rs3828044 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 665 chr1 10509702 10509703 rs1307494 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 895.000000,4113.000000, 0.178714,0.821286, maf-5-some-pop 665 chr1 10521398 10521399 rs3829642 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 40.000000,4968.000000,4968.000000,40.000000, 0.003994,0.496006,0.496006,0.003994, maf-5-some-pop 665 chr1 10532980 10532981 rs11588734 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop 665 chr1 10537089 10537090 rs684016 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2959.000000,2049.000000,2049.000000,2959.000000, 0.295427,0.204573,0.204573,0.295427, maf-5-some-pop,maf-5-all-pops 665 chr1 10543835 10543836 rs9970001 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 665 chr1 10544546 10544547 rs668805 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops 665 chr1 10544724 10544725 rs669701 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 665 chr1 10544987 10544988 rs12565133 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1845.000000,3163.000000, 0.368411,0.631589, maf-5-some-pop,maf-5-all-pops 665 chr1 10549379 10549380 rs670666 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 665 chr1 10549627 10549628 rs585870 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3772.000000,1236.000000,1236.000000,3772.000000, 0.376597,0.123403,0.123403,0.376597, maf-5-some-pop,maf-5-all-pops 665 chr1 10558209 10558210 rs647281 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 4 A,C,G,T, 634.000000,4374.000000,4374.000000,634.000000, 0.063299,0.436701,0.436701,0.063299, maf-5-some-pop 665 chr1 10563608 10563609 rs10864459 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 665 chr1 10563670 10563671 rs10864460 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops 665 chr1 10563680 10563681 rs2506902 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3800.000000,1208.000000, 0.758786,0.241214, maf-5-some-pop,maf-5-all-pops 665 chr1 10566147 10566148 rs7543322 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops 665 chr1 10566271 10566272 rs616402 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1479.000000,3529.000000,3529.000000,1479.000000, 0.147664,0.352336,0.352336,0.147664, maf-5-some-pop,maf-5-all-pops 665 chr1 10571840 10571841 rs6540935 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop 665 chr1 10573303 10573304 rs17035111 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 665 chr1 10580890 10580891 rs2483677 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3933.000000,1075.000000, 0.785343,0.214657, maf-5-some-pop 665 chr1 10582046 10582047 rs2483678 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3873.000000,1135.000000, 0.773363,0.226637, maf-5-some-pop,maf-5-all-pops 665 chr1 10582126 10582127 rs12057729 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4367.000000,641.000000, 0.872005,0.127995, maf-5-some-pop 665 chr1 10585526 10585527 rs17035156 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,maf-5-all-pops 665 chr1 10589835 10589836 rs7548453 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3095.000000,1913.000000, 0.618011,0.381989, maf-5-some-pop,maf-5-all-pops 665 chr1 10591103 10591104 rs12090079 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop,genotype-conflict 665 chr1 10593295 10593296 rs2480782 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 470.000000,4538.000000,4538.000000,470.000000, 0.046925,0.453075,0.453075,0.046925, maf-5-some-pop,genotype-conflict 665 chr1 10596529 10596530 rs2480778 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 316.000000,4692.000000,4692.000000,316.000000, 0.031550,0.468450,0.468450,0.031550, maf-5-some-pop,genotype-conflict 665 chr1 10597052 10597053 rs2506891 0 + T T G/T genomic single unknown 0 0 intron exact 1 MixedObserved 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 665 chr1 10597550 10597551 rs2480777 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1147.000000,3861.000000,3861.000000,1147.000000, 0.114517,0.385483,0.385483,0.114517, maf-5-some-pop 665 chr1 10599562 10599563 rs17035212 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 665 chr1 10603715 10603716 rs2506896 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1385.000000,3623.000000, 0.276558,0.723442, maf-5-some-pop,maf-5-all-pops 665 chr1 10604538 10604539 rs2506898 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3164.000000,1844.000000, 0.631789,0.368211, maf-5-some-pop,maf-5-all-pops 665 chr1 10606995 10606996 rs2480775 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3246.000000,1762.000000,1762.000000,3246.000000, 0.324081,0.175919,0.175919,0.324081, maf-5-some-pop,maf-5-all-pops,microattr-tpa 665 chr1 10607227 10607228 rs2480774 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4786.000000,222.000000,222.000000,4786.000000, 0.477835,0.022165,0.022165,0.477835, maf-5-some-pop,genotype-conflict 665 chr1 10607450 10607451 rs944191 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3771.000000,1237.000000,1237.000000,3771.000000, 0.376498,0.123502,0.123502,0.376498, maf-5-some-pop,maf-5-all-pops 665 chr1 10607894 10607895 rs11121582 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop,maf-5-all-pops,genotype-conflict 665 chr1 10608397 10608398 rs11121583 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop,genotype-conflict 665 chr1 10608595 10608596 rs4846230 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 665 chr1 10609089 10609090 rs2480773 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3360.000000,1648.000000,1648.000000,3360.000000, 0.335463,0.164537,0.164537,0.335463, maf-5-some-pop,maf-5-all-pops,genotype-conflict 665 chr1 10610697 10610698 rs1411400 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4946.000000,62.000000,62.000000,4946.000000, 0.493810,0.006190,0.006190,0.493810, maf-5-some-pop,maf-5-all-pops,genotype-conflict 665 chr1 10611402 10611403 rs6688558 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1589.000000,3419.000000, 0.317292,0.682708, maf-5-some-pop,genotype-conflict 665 chr1 10613166 10613167 rs7555790 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1584.000000,3424.000000, 0.316294,0.683706, maf-5-some-pop,maf-5-all-pops 665 chr1 10613559 10613560 rs10864463 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1654.000000,3354.000000, 0.330272,0.669728, maf-5-some-pop,maf-5-all-pops,microattr-tpa 665 chr1 10616483 10616484 rs4240915 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 666 chr1 10617033 10617034 rs12028449 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1127.000000,3881.000000, 0.225040,0.774960, maf-5-some-pop,genotype-conflict 666 chr1 10617190 10617191 rs17035313 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,genotype-conflict 666 chr1 10617271 10617272 rs9660006 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1653.000000,3355.000000, 0.330072,0.669928, maf-5-some-pop,maf-5-all-pops 666 chr1 10622373 10622374 rs7512467 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4113.000000,895.000000, 0.821286,0.178714, maf-5-some-pop 666 chr1 10626921 10626922 rs11121594 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2957.000000,2051.000000, 0.590455,0.409545, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10627541 10627542 rs12033275 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4037.000000,971.000000, 0.806110,0.193890, maf-5-some-pop 666 chr1 10633244 10633245 rs6687430 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2644.000000,2364.000000, 0.527955,0.472045, maf-5-some-pop,maf-5-all-pops 666 chr1 10633272 10633273 rs6687502 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2956.000000,2052.000000, 0.590256,0.409744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10643828 10643829 rs12045923 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2442.000000,2566.000000, 0.487620,0.512380, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10648804 10648805 rs10864467 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 666 chr1 10649222 10649223 rs12090714 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop,genotype-conflict 666 chr1 10650343 10650344 rs11577757 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop 666 chr1 10650381 10650382 rs2387144 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 666 chr1 10650508 10650509 rs2387145 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 666 chr1 10652604 10652605 rs6668131 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop 666 chr1 10655935 10655936 rs284269 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4582.000000,426.000000,426.000000,4582.000000, 0.457468,0.042532,0.042532,0.457468, maf-5-some-pop 666 chr1 10656323 10656324 rs284268 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 716.000000,4292.000000,4292.000000,716.000000, 0.071486,0.428514,0.428514,0.071486, maf-5-some-pop 666 chr1 10656334 10656335 rs6657808 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 666 chr1 10656350 10656351 rs284267 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1267.000000,3741.000000,3741.000000,1267.000000, 0.126498,0.373502,0.373502,0.126498, maf-5-some-pop,maf-5-all-pops 666 chr1 10657911 10657912 rs17035414 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10662877 10662878 rs6684576 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,SC_SNP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop 666 chr1 10669097 10669098 rs6666075 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2012.000000,2996.000000, 0.401757,0.598243, maf-5-some-pop,maf-5-all-pops 666 chr1 10676799 10676800 rs284239 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 194.000000,4814.000000,4814.000000,194.000000, 0.019369,0.480631,0.480631,0.019369, maf-5-some-pop 666 chr1 10687725 10687726 rs185864 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10694039 10694040 rs17035493 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 666 chr1 10694124 10694125 rs284301 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 894.000000,4114.000000,4114.000000,894.000000, 0.089257,0.410743,0.410743,0.089257, maf-5-some-pop 666 chr1 10704069 10704070 rs284246 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4816.000000,192.000000,192.000000,4816.000000, 0.480831,0.019169,0.019169,0.480831, maf-5-some-pop 666 chr1 10707811 10707812 rs3790638 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 666 chr1 10719565 10719566 rs476164 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3803.000000,1205.000000,1205.000000,3803.000000, 0.379692,0.120308,0.120308,0.379692, maf-5-some-pop,maf-5-all-pops 666 chr1 10725386 10725387 rs17035539 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 539.000000,4469.000000, 0.107628,0.892372, maf-5-some-pop 666 chr1 10726688 10726689 rs284321 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 510.000000,4498.000000,4498.000000,510.000000, 0.050919,0.449081,0.449081,0.050919, maf-5-some-pop,genotype-conflict 666 chr1 10727019 10727020 rs284320 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3478.000000,1530.000000,1530.000000,3478.000000, 0.347244,0.152756,0.152756,0.347244, maf-5-some-pop,maf-5-all-pops 666 chr1 10736433 10736434 rs284313 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2603.000000,2405.000000,2405.000000,2603.000000, 0.259884,0.240116,0.240116,0.259884, maf-5-some-pop,maf-5-all-pops 666 chr1 10739862 10739863 rs17035549 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,genotype-conflict 666 chr1 10740625 10740626 rs556506 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop 666 chr1 10740640 10740641 rs557153 0 + G G A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 9 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 3 A,C,G, 219.000000,22.000000,4767.000000, 0.043730,0.004393,0.951877, maf-5-some-pop 666 chr1 10743748 10743749 rs284261 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,genotype-conflict 666 chr1 10747261 10747262 rs284257 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4649.000000,359.000000,359.000000,4649.000000, 0.464157,0.035843,0.035843,0.464157, maf-5-some-pop 667 chr1 10757198 10757199 rs4845948 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 667 chr1 10760509 10760510 rs734736 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1507.000000,3501.000000, 0.300919,0.699081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10764235 10764236 rs17035599 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 667 chr1 10771487 10771488 rs710133 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop,maf-5-all-pops 667 chr1 10780726 10780727 rs706007 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3677.000000,1331.000000,1331.000000,3677.000000, 0.367113,0.132887,0.132887,0.367113, maf-5-some-pop,genotype-conflict 667 chr1 10788051 10788052 rs12057815 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10790535 10790536 rs284278 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2720.000000,2288.000000,2288.000000,2720.000000, 0.271565,0.228435,0.228435,0.271565, maf-5-some-pop,maf-5-all-pops 667 chr1 10790796 10790797 rs284277 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PAGE_STUDY,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2048.000000,2960.000000,2960.000000,2048.000000, 0.204473,0.295527,0.295527,0.204473, maf-5-some-pop,maf-5-all-pops 667 chr1 10793410 10793411 rs6540946 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 667 chr1 10801584 10801585 rs4845843 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop,maf-5-all-pops 667 chr1 10808586 10808587 rs2076492 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop,maf-5-all-pops 667 chr1 10823773 10823774 rs11121613 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop,genotype-conflict 667 chr1 10823785 10823786 rs6540948 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2058.000000,2950.000000, 0.410942,0.589058, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10825656 10825657 rs17035678 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCMHGSC_JDW,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 667 chr1 10825685 10825686 rs17035680 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop 667 chr1 10825698 10825699 rs17035686 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop 667 chr1 10827134 10827135 rs205488 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops 667 chr1 10832860 10832861 rs205474 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10847339 10847340 rs6658023 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10848059 10848060 rs11121621 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops 667 chr1 10858745 10858746 rs718047 0 + C C A/C genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop 667 chr1 10873381 10873382 rs1769669 0 - G G C/T genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1951.000000,3057.000000,3057.000000,1951.000000, 0.194788,0.305212,0.305212,0.194788, maf-5-some-pop,maf-5-all-pops 667 chr1 10874151 10874152 rs1776219 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10876599 10876600 rs6688450 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop,maf-5-all-pops 668 chr1 10880231 10880232 rs710128 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1220.000000,3788.000000, 0.243610,0.756390, maf-5-some-pop,maf-5-all-pops 668 chr1 10887922 10887923 rs539790 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BL,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 316.000000,4692.000000,4692.000000,316.000000, 0.031550,0.468450,0.468450,0.031550, maf-5-some-pop,genotype-conflict 668 chr1 10890770 10890771 rs497483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2525.000000,2483.000000, 0.504193,0.495807, maf-5-some-pop,maf-5-all-pops 668 chr1 10890892 10890893 rs519391 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 668 chr1 10891338 10891339 rs2143385 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10891499 10891500 rs2840299 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1608.000000,3400.000000,3400.000000,1608.000000, 0.160543,0.339457,0.339457,0.160543, maf-5-some-pop,maf-5-all-pops 668 chr1 10891776 10891777 rs527676 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 420.000000,4588.000000,4588.000000,420.000000, 0.041933,0.458067,0.458067,0.041933, maf-5-some-pop,genotype-conflict 668 chr1 10892932 10892933 rs580547 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3227.000000,1781.000000,1781.000000,3227.000000, 0.322185,0.177815,0.177815,0.322185, maf-5-some-pop,maf-5-all-pops 668 chr1 10893080 10893081 rs1292657 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3861.000000,1147.000000, 0.770966,0.229034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10905364 10905365 rs1292664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3915.000000,1093.000000, 0.781749,0.218251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10906633 10906634 rs535724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 668 chr1 10907207 10907208 rs1292665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop,maf-5-all-pops 668 chr1 10907841 10907842 rs672270 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop 668 chr1 10908411 10908412 rs1292666 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2460.000000,2548.000000, 0.491214,0.508786, maf-5-some-pop,maf-5-all-pops 668 chr1 10909592 10909593 rs515331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop 668 chr1 10917439 10917440 rs569456 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2483.000000,2525.000000, 0.495807,0.504193, maf-5-some-pop,maf-5-all-pops 668 chr1 10918757 10918758 rs622120 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,genotype-conflict 668 chr1 10929008 10929009 rs10864475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop,genotype-conflict 668 chr1 10929297 10929298 rs1281001 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1996.000000,3012.000000,3012.000000,1996.000000, 0.199281,0.300719,0.300719,0.199281, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10934298 10934299 rs12061144 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 544.000000,4464.000000, 0.108626,0.891374, maf-5-some-pop 668 chr1 10934873 10934874 rs12065037 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2162.000000,2846.000000, 0.431709,0.568291, maf-5-some-pop 668 chr1 10935422 10935423 rs1280995 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop,genotype-conflict 668 chr1 10939079 10939080 rs6686445 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4162.000000,846.000000, 0.831070,0.168930, maf-5-some-pop,maf-5-all-pops 668 chr1 10950725 10950726 rs7536814 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop 668 chr1 10951174 10951175 rs10864476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop 668 chr1 10958934 10958935 rs7522413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 668 chr1 10968729 10968730 rs10864479 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10977101 10977102 rs6540954 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop,maf-5-all-pops 668 chr1 10983841 10983842 rs6657217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 668 chr1 10984405 10984406 rs1280985 0 - T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 668 chr1 10995478 10995479 rs1281003 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 498.000000,4510.000000,4510.000000,498.000000, 0.049720,0.450280,0.450280,0.049720, maf-5-some-pop,genotype-conflict 668 chr1 11000275 11000276 rs12755921 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1894.000000,3114.000000, 0.378195,0.621805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 11000720 11000721 rs6664866 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2932.000000,2076.000000, 0.585463,0.414537, maf-5-some-pop 668 chr1 11002487 11002488 rs6656310 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,genotype-conflict 668 chr1 11002578 11002579 rs1281030 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4818.000000,190.000000,190.000000,4818.000000, 0.481030,0.018970,0.018970,0.481030, maf-5-some-pop 668 chr1 11007071 11007072 rs1281020 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4610.000000,398.000000,398.000000,4610.000000, 0.460264,0.039736,0.039736,0.460264, maf-5-some-pop 668 chr1 11009542 11009543 rs1281014 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 347.000000,4661.000000,4661.000000,347.000000, 0.034645,0.465355,0.465355,0.034645, maf-5-some-pop,genotype-conflict 668 chr1 11009678 11009679 rs1281013 0 - G G C/T genomic single unknown 0 0 intron,splice-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 346.000000,4662.000000,4662.000000,346.000000, 0.034545,0.465455,0.465455,0.034545, maf-5-some-pop 669 chr1 11011001 11011002 rs1281008 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1658.000000,3350.000000,3350.000000,1658.000000, 0.165535,0.334465,0.334465,0.165535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 669 chr1 11017550 11017551 rs12030940 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop 669 chr1 11018064 11018065 rs12758614 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 669 chr1 11023695 11023696 rs6667397 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2635.000000,2373.000000, 0.526158,0.473842, maf-5-some-pop,maf-5-all-pops 669 chr1 11029477 11029478 rs12085319 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2415.000000,2593.000000, 0.482228,0.517772, maf-5-some-pop 669 chr1 11034816 11034817 rs9659356 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 669 chr1 11038475 11038476 rs11121667 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3087.000000,1921.000000, 0.616414,0.383586, maf-5-some-pop,maf-5-all-pops,genotype-conflict 669 chr1 11038603 11038604 rs11121668 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,genotype-conflict 669 chr1 11042241 11042242 rs11121670 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 669 chr1 11049253 11049254 rs12068532 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 669 chr1 11060074 11060075 rs11121675 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop 669 chr1 11060798 11060799 rs7517230 0 + A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop,genotype-conflict 669 chr1 11063042 11063043 rs11121676 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2934.000000,2074.000000, 0.585863,0.414137, maf-5-some-pop,maf-5-all-pops 669 chr1 11072578 11072579 rs968545 0 - T T A/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 150.000000,4858.000000,4858.000000,150.000000, 0.014976,0.485024,0.485024,0.014976, maf-5-some-pop,genotype-conflict 669 chr1 11074249 11074250 rs3765895 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 774.000000,4234.000000, 0.154553,0.845447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 669 chr1 11074581 11074582 rs3765897 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 669 chr1 11086331 11086332 rs2273347 0 - A A C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SEQUENOM,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2072.000000,2936.000000,2936.000000,2072.000000, 0.206869,0.293131,0.293131,0.206869, maf-5-some-pop,maf-5-all-pops 669 chr1 11093740 11093741 rs7556039 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 706.000000,4302.000000, 0.140974,0.859026, maf-5-some-pop,maf-5-all-pops 669 chr1 11095038 11095039 rs6695096 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 789.000000,4219.000000, 0.157548,0.842452, maf-5-some-pop,maf-5-all-pops 669 chr1 11128653 11128654 rs2791655 0 - G G C/T genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2956.000000,2052.000000,2052.000000,2956.000000, 0.295128,0.204872,0.204872,0.295128, maf-5-some-pop,maf-5-all-pops 669 chr1 11129258 11129259 rs1194820 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2319.000000,2689.000000,2689.000000,2319.000000, 0.231530,0.268470,0.268470,0.231530, maf-5-some-pop 669 chr1 11130642 11130643 rs910660 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1973.000000,3035.000000,3035.000000,1973.000000, 0.196985,0.303015,0.303015,0.196985, maf-5-some-pop,maf-5-all-pops 669 chr1 11134837 11134838 rs12118762 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop,maf-5-all-pops 669 chr1 11140442 11140443 rs12072693 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 670 chr1 11151313 11151314 rs2273336 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4405.000000,603.000000,603.000000,4405.000000, 0.439796,0.060204,0.060204,0.439796, maf-5-some-pop 670 chr1 11181846 11181847 rs11121692 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 670 chr1 11181984 11181985 rs41274510 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,CLINSEQ_SNP,EVA-GONL,ILLUMINA,NHLBI-ESP,SI_EXO,SSMP, 2 A,G, 48.000000,4960.000000, 0.009585,0.990415, 670 chr1 11186896 11186897 rs3737611 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 4143.000000,865.000000,865.000000,4143.000000, 0.413638,0.086362,0.086362,0.413638, maf-5-some-pop 670 chr1 11188855 11188856 rs17036377 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 670 chr1 11189076 11189077 rs3730380 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 4736.000000,272.000000,272.000000,4736.000000, 0.472843,0.027157,0.027157,0.472843, maf-5-some-pop 670 chr1 11190645 11190646 rs2275527 0 - G G C/T genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 1145.000000,3863.000000,3863.000000,1145.000000, 0.114317,0.385683,0.385683,0.114317, maf-5-some-pop,maf-5-all-pops 670 chr1 11191231 11191232 rs12732063 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop 670 chr1 11194590 11194591 rs3730381 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 487.000000,4521.000000,4521.000000,487.000000, 0.048622,0.451378,0.451378,0.048622, maf-5-some-pop 670 chr1 11199148 11199149 rs2275528 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 4522.000000,486.000000,486.000000,4522.000000, 0.451478,0.048522,0.048522,0.451478, maf-5-some-pop 670 chr1 11205057 11205058 rs1057079 0 - C C A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 InconsistentAlleles 34 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 2742.000000,2266.000000,2266.000000,2742.000000, 0.273762,0.226238,0.226238,0.273762, maf-5-some-pop 670 chr1 11206622 11206623 rs3730384 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,WIPGA, 4 A,C,G,T, 121.000000,4887.000000,4887.000000,121.000000, 0.012081,0.487919,0.487919,0.012081, maf-5-some-pop 670 chr1 11206689 11206690 rs2275942 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WIPGA,YUSUKE, 2 A,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 670 chr1 11210103 11210104 rs3730385 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 274.000000,4734.000000,4734.000000,274.000000, 0.027356,0.472644,0.472644,0.027356, maf-5-some-pop 670 chr1 11215995 11215996 rs17036421 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop,genotype-conflict 670 chr1 11216664 11216665 rs4282823 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop,maf-5-all-pops 670 chr1 11222392 11222393 rs7553827 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1331.000000,3677.000000, 0.265775,0.734225, maf-5-some-pop,maf-5-all-pops 670 chr1 11236409 11236410 rs10864490 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop 670 chr1 11238062 11238063 rs11121696 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops 670 chr1 11238415 11238416 rs17036458 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop 670 chr1 11241942 11241943 rs12121866 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 670 chr1 11244488 11244489 rs12118640 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 670 chr1 11248019 11248020 rs12122605 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4128.000000,880.000000, 0.824281,0.175719, maf-5-some-pop 670 chr1 11248236 11248237 rs12122678 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 670 chr1 11249131 11249132 rs1034528 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,AFFY,BGI,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 1448.000000,3560.000000, 0.289137,0.710863, maf-5-some-pop,maf-5-all-pops 670 chr1 11255430 11255431 rs12124598 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 670 chr1 11269795 11269796 rs1010447 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 3487.000000,1521.000000, 0.696286,0.303714, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11278162 11278163 rs7526649 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1572.000000,3436.000000, 0.313898,0.686102, maf-5-some-pop,maf-5-all-pops 671 chr1 11278812 11278813 rs7549109 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2717.000000,2291.000000, 0.542532,0.457468, maf-5-some-pop 671 chr1 11286177 11286178 rs12124983 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop 671 chr1 11286217 11286218 rs10864494 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 671 chr1 11288757 11288758 rs1064261 0 - G G C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 33 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA,WI_SSAHASNP, 4 A,C,G,T, 3508.000000,1500.000000,1500.000000,3508.000000, 0.350240,0.149760,0.149760,0.350240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11289160 11289161 rs2076655 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop 671 chr1 11293791 11293792 rs11121703 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1805.000000,3203.000000, 0.360423,0.639577, maf-5-some-pop,maf-5-all-pops 671 chr1 11293958 11293959 rs11121704 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1498.000000,3510.000000, 0.299121,0.700879, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11299510 11299511 rs7544489 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11301713 11301714 rs1135172 0 - A A C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 1805.000000,3203.000000,3203.000000,1805.000000, 0.180212,0.319788,0.319788,0.180212, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11301840 11301841 rs2076656 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,C, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop 671 chr1 11302064 11302065 rs11121706 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3203.000000,1805.000000, 0.639577,0.360423, maf-5-some-pop,maf-5-all-pops 671 chr1 11304719 11304720 rs4845858 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop 671 chr1 11325520 11325521 rs6540965 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3373.000000,1635.000000, 0.673522,0.326478, maf-5-some-pop,maf-5-all-pops 671 chr1 11325909 11325910 rs6671083 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3370.000000,1638.000000, 0.672923,0.327077, maf-5-some-pop,maf-5-all-pops 671 chr1 11347491 11347492 rs17036631 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop 671 chr1 11360192 11360193 rs12133272 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4277.000000,731.000000, 0.854034,0.145966, maf-5-some-pop 671 chr1 11360956 11360957 rs2744815 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop 671 chr1 11360976 11360977 rs12137596 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop 671 chr1 11361426 11361427 rs2744816 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop 671 chr1 11364134 11364135 rs11121718 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,genotype-conflict 671 chr1 11364919 11364920 rs11121720 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 926.000000,4082.000000, 0.184904,0.815096, maf-5-some-pop 671 chr1 11375058 11375059 rs12143691 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 671 chr1 11383838 11383839 rs4845992 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 671 chr1 11387621 11387622 rs2744826 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop 671 chr1 11388732 11388733 rs17036666 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop,genotype-conflict 671 chr1 11395770 11395771 rs2993664 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3535.000000,1473.000000,1473.000000,3535.000000, 0.352935,0.147065,0.147065,0.352935, maf-5-some-pop,maf-5-all-pops 671 chr1 11396833 11396834 rs3120821 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1265.000000,3743.000000,3743.000000,1265.000000, 0.126298,0.373702,0.373702,0.126298, maf-5-some-pop,maf-5-all-pops 671 chr1 11400408 11400409 rs3120819 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2741.000000,2267.000000,2267.000000,2741.000000, 0.273662,0.226338,0.226338,0.273662, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11400566 11400567 rs2993660 0 - C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 671 chr1 11401744 11401745 rs2982384 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1506.000000,3502.000000, 0.300719,0.699281, maf-5-some-pop,maf-5-all-pops 671 chr1 11402748 11402749 rs3124632 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1672.000000,3336.000000, 0.333866,0.666134, maf-5-some-pop,maf-5-all-pops 672 chr1 11404631 11404632 rs3010228 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3101.000000,1907.000000, 0.619209,0.380791, maf-5-some-pop,maf-5-all-pops 672 chr1 11411431 11411432 rs2788558 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3756.000000,1252.000000,1252.000000,3756.000000, 0.375000,0.125000,0.125000,0.375000, maf-5-some-pop,genotype-conflict 672 chr1 11414171 11414172 rs11121722 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2603.000000,2405.000000, 0.519768,0.480232, maf-5-some-pop 672 chr1 11415658 11415659 rs10864499 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2637.000000,2371.000000, 0.526558,0.473442, maf-5-some-pop,maf-5-all-pops 672 chr1 11416251 11416252 rs733761 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 672 chr1 11417981 11417982 rs2788549 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 422.000000,4586.000000,4586.000000,422.000000, 0.042133,0.457867,0.457867,0.042133, maf-5-some-pop 672 chr1 11419810 11419811 rs2788541 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 535.000000,4473.000000,4473.000000,535.000000, 0.053415,0.446585,0.446585,0.053415, maf-5-some-pop 672 chr1 11419867 11419868 rs2744854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1847.000000,3161.000000, 0.368810,0.631190, maf-5-some-pop,maf-5-all-pops 672 chr1 11421814 11421815 rs2744857 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2054.000000,2954.000000, 0.410144,0.589856, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11425698 11425699 rs17036706 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 672 chr1 11427890 11427891 rs2788568 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4868.000000,140.000000,140.000000,4868.000000, 0.486022,0.013978,0.013978,0.486022, maf-5-some-pop 672 chr1 11429688 11429689 rs6540971 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,G, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop 672 chr1 11435941 11435942 rs2335404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2668.000000,2340.000000, 0.532748,0.467252, maf-5-some-pop,maf-5-all-pops 672 chr1 11436156 11436157 rs2335405 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2669.000000,2339.000000, 0.532947,0.467053, maf-5-some-pop,maf-5-all-pops 672 chr1 11444183 11444184 rs2982371 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2510.000000,2498.000000, 0.501198,0.498802, maf-5-some-pop,maf-5-all-pops 672 chr1 11444582 11444583 rs12089828 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 672 chr1 11445222 11445223 rs11121724 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 672 chr1 11446909 11446910 rs6694736 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 672 chr1 11452290 11452291 rs4329522 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop,genotype-conflict 672 chr1 11453576 11453577 rs6702848 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2550.000000,2458.000000, 0.509185,0.490815, maf-5-some-pop,maf-5-all-pops 672 chr1 11453633 11453634 rs6662762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 672 chr1 11455829 11455830 rs12067947 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 672 chr1 11456535 11456536 rs12094886 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 672 chr1 11461600 11461601 rs6671983 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1898.000000,3110.000000, 0.378994,0.621006, maf-5-some-pop,maf-5-all-pops 672 chr1 11468441 11468442 rs11121728 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2236.000000,2772.000000, 0.446486,0.553514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11473160 11473161 rs6670949 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 672 chr1 11473322 11473323 rs17419268 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 672 chr1 11475862 11475863 rs11576756 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,T, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop 672 chr1 11476540 11476541 rs2890085 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2424.000000,2584.000000, 0.484026,0.515974, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11476573 11476574 rs11121730 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2055.000000,2953.000000, 0.410343,0.589657, maf-5-some-pop,maf-5-all-pops 672 chr1 11477293 11477294 rs10864505 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1705.000000,3303.000000, 0.340455,0.659545, maf-5-some-pop,maf-5-all-pops 672 chr1 11477340 11477341 rs11121731 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1123.000000,3885.000000, 0.224241,0.775759, maf-5-some-pop 672 chr1 11480819 11480820 rs3124621 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop 672 chr1 11488202 11488203 rs2077480 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2859.000000,2149.000000, 0.570887,0.429113, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11489174 11489175 rs3123602 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1806.000000,3202.000000, 0.360623,0.639377, maf-5-some-pop,maf-5-all-pops 672 chr1 11489254 11489255 rs877307 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3026.000000,1982.000000, 0.604233,0.395767, maf-5-some-pop,maf-5-all-pops 672 chr1 11493813 11493814 rs11121733 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2886.000000,2122.000000, 0.576278,0.423722, maf-5-some-pop,maf-5-all-pops 672 chr1 11493831 11493832 rs2922240 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1854.000000,3154.000000, 0.370208,0.629792, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11493867 11493868 rs11121734 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1747.000000,3261.000000, 0.348842,0.651158, maf-5-some-pop,maf-5-all-pops 672 chr1 11494850 11494851 rs2379152 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1897.000000,3111.000000, 0.378794,0.621206, maf-5-some-pop,maf-5-all-pops 672 chr1 11495006 11495007 rs3099623 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1783.000000,3225.000000, 0.356030,0.643970, maf-5-some-pop,maf-5-all-pops 672 chr1 11496714 11496715 rs3010217 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop 672 chr1 11499387 11499388 rs3099627 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop 672 chr1 11501601 11501602 rs12048424 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3409.000000,1599.000000, 0.680711,0.319289, maf-5-some-pop 672 chr1 11502444 11502445 rs3123606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 672 chr1 11502828 11502829 rs3123607 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2541.000000,2467.000000, 0.507388,0.492612, maf-5-some-pop,maf-5-all-pops 672 chr1 11502850 11502851 rs12146008 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop 672 chr1 11503128 11503129 rs17036855 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 672 chr1 11507302 11507303 rs3010220 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 672 chr1 11516520 11516521 rs11577773 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3289.000000,1719.000000, 0.656749,0.343251, maf-5-some-pop,maf-5-all-pops 672 chr1 11517134 11517135 rs6682318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop,maf-5-all-pops 672 chr1 11519779 11519780 rs2379161 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4143.000000,865.000000, 0.827276,0.172724, maf-5-some-pop 672 chr1 11520951 11520952 rs12124853 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3533.000000,1475.000000, 0.705471,0.294529, maf-5-some-pop,maf-5-all-pops 672 chr1 11522060 11522061 rs12125968 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4354.000000,654.000000, 0.869409,0.130591, maf-5-some-pop 672 chr1 11522311 11522312 rs11121745 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop 672 chr1 11522579 11522580 rs6540977 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 672 chr1 11524781 11524782 rs7534387 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop 672 chr1 11525532 11525533 rs12046038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3723.000000,1285.000000, 0.743411,0.256589, maf-5-some-pop,maf-5-all-pops,microattr-tpa 672 chr1 11526895 11526896 rs4846008 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop 672 chr1 11527303 11527304 rs7543377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 418.000000,4590.000000, 0.083467,0.916534, maf-5-some-pop,genotype-conflict 672 chr1 11531058 11531059 rs4846010 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop,genotype-conflict 672 chr1 11531075 11531076 rs7546801 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3015.000000,1993.000000, 0.602037,0.397963, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11531917 11531918 rs17036930 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3792.000000,1216.000000, 0.757188,0.242812, maf-5-some-pop,maf-5-all-pops 672 chr1 11532504 11532505 rs7550289 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 672 chr1 11532524 11532525 rs6674181 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 3047.000000,1961.000000, 0.608427,0.391573, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11533010 11533011 rs6674692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,genotype-conflict 672 chr1 11534052 11534053 rs10159458 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 1740.000000,3268.000000, 0.347444,0.652556, maf-5-some-pop 673 chr1 11534541 11534542 rs11121748 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2125.000000,2883.000000, 0.424321,0.575679, maf-5-some-pop,maf-5-all-pops 673 chr1 11547406 11547407 rs12073265 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop 673 chr1 11547582 11547583 rs2379137 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop 673 chr1 11550631 11550632 rs6674713 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 C,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 673 chr1 11551815 11551816 rs12565837 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 673 chr1 11554594 11554595 rs12129875 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 989.000000,4019.000000, 0.197484,0.802516, maf-5-some-pop 673 chr1 11567189 11567190 rs2817637 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3139.000000,1869.000000, 0.626797,0.373203, maf-5-some-pop,maf-5-all-pops 673 chr1 11574365 11574366 rs10864515 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop,maf-5-all-pops,genotype-conflict 673 chr1 11576205 11576206 rs17036950 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,AFFY,CANCER-GENOME,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 673 chr1 11577092 11577093 rs7513927 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,C, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 673 chr1 11586584 11586585 rs2817636 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4119.000000,889.000000, 0.822484,0.177516, maf-5-some-pop 673 chr1 11586676 11586677 rs2745260 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4095.000000,913.000000,913.000000,4095.000000, 0.408846,0.091154,0.091154,0.408846, maf-5-some-pop 673 chr1 11591803 11591804 rs11121762 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,TISHKOFF, 2 A,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 673 chr1 11598669 11598670 rs2817626 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 230.000000,4778.000000,4778.000000,230.000000, 0.022963,0.477037,0.477037,0.022963, maf-5-some-pop 673 chr1 11600357 11600358 rs2594307 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 114.000000,4894.000000,4894.000000,114.000000, 0.011382,0.488618,0.488618,0.011382, maf-5-some-pop 673 chr1 11601053 11601054 rs2745292 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2255.000000,2753.000000,2753.000000,2255.000000, 0.225140,0.274860,0.274860,0.225140, maf-5-some-pop,maf-5-all-pops 673 chr1 11605182 11605183 rs6683331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3909.000000,1099.000000, 0.780551,0.219449, maf-5-some-pop 673 chr1 11607223 11607224 rs2817613 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1129.000000,3879.000000,3879.000000,1129.000000, 0.112720,0.387280,0.387280,0.112720, maf-5-some-pop 673 chr1 11607931 11607932 rs2745291 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2284.000000,2724.000000,2724.000000,2284.000000, 0.228035,0.271965,0.271965,0.228035, maf-5-some-pop,maf-5-all-pops 673 chr1 11608015 11608016 rs41326749 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 673 chr1 11614267 11614268 rs2594289 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2231.000000,2777.000000, 0.445487,0.554513, maf-5-some-pop,maf-5-all-pops 673 chr1 11618277 11618278 rs2817597 0 - A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 673 chr1 11618591 11618592 rs2817594 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4208.000000,800.000000,800.000000,4208.000000, 0.420128,0.079872,0.079872,0.420128, maf-5-some-pop 673 chr1 11622978 11622979 rs2817581 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP, 2 C,T, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop 673 chr1 11626857 11626858 rs2745285 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1841.000000,3167.000000,3167.000000,1841.000000, 0.183806,0.316194,0.316194,0.183806, maf-5-some-pop 673 chr1 11627268 11627269 rs2817583 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop 673 chr1 11630121 11630122 rs3912023 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 687.000000,4321.000000,4321.000000,687.000000, 0.068590,0.431410,0.431410,0.068590, maf-5-some-pop 673 chr1 11630229 11630230 rs2745282 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2027.000000,2981.000000,2981.000000,2027.000000, 0.202376,0.297624,0.297624,0.202376, maf-5-some-pop 673 chr1 11633981 11633982 rs10864520 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4021.000000,987.000000, 0.802915,0.197085, maf-5-some-pop,maf-5-all-pops 673 chr1 11641282 11641283 rs2745276 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1042.000000,3966.000000,3966.000000,1042.000000, 0.104034,0.395966,0.395966,0.104034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 673 chr1 11641443 11641444 rs11121770 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 673 chr1 11645597 11645598 rs2745275 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 951.000000,4057.000000,4057.000000,951.000000, 0.094948,0.405052,0.405052,0.094948, maf-5-some-pop 673 chr1 11647668 11647669 rs2817644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop,maf-5-all-pops 673 chr1 11648199 11648200 rs11589841 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop 673 chr1 11651652 11651653 rs10864525 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 673 chr1 11651909 11651910 rs714829 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 4780.000000,228.000000,228.000000,4780.000000, 0.477236,0.022764,0.022764,0.477236, maf-5-some-pop,genotype-conflict 673 chr1 11652204 11652205 rs2335767 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2310.000000,2698.000000, 0.461262,0.538738, maf-5-some-pop,maf-5-all-pops 673 chr1 11652493 11652494 rs4846015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3259.000000,1749.000000, 0.650759,0.349241, maf-5-some-pop,maf-5-all-pops 673 chr1 11661964 11661965 rs6693599 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3332.000000,1676.000000, 0.665335,0.334665, maf-5-some-pop,maf-5-all-pops 673 chr1 11665197 11665198 rs11121778 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3986.000000,1022.000000, 0.795927,0.204073, maf-5-some-pop,genotype-conflict 674 chr1 11670024 11670025 rs1320984 0 - C C A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2622.000000,2386.000000,2386.000000,2622.000000, 0.261781,0.238219,0.238219,0.261781, maf-5-some-pop,maf-5-all-pops 674 chr1 11671328 11671329 rs1810483 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 178.000000,4830.000000,4830.000000,178.000000, 0.017772,0.482228,0.482228,0.017772, maf-5-some-pop 674 chr1 11671341 11671342 rs909945 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2163.000000,2845.000000,2845.000000,2163.000000, 0.215954,0.284046,0.284046,0.215954, maf-5-some-pop,maf-5-all-pops 674 chr1 11678194 11678195 rs761092 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1798.000000,3210.000000,3210.000000,1798.000000, 0.179513,0.320487,0.320487,0.179513, maf-5-some-pop,maf-5-all-pops 674 chr1 11680282 11680283 rs7550768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1219.000000,3789.000000, 0.243411,0.756589, maf-5-some-pop,maf-5-all-pops 674 chr1 11681567 11681568 rs6701965 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2126.000000,2882.000000, 0.424521,0.575479, maf-5-some-pop,maf-5-all-pops 674 chr1 11696835 11696836 rs10864530 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2811.000000,2197.000000, 0.561302,0.438698, maf-5-some-pop,maf-5-all-pops 674 chr1 11697097 11697098 rs6685318 0 + A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 674 chr1 11697181 11697182 rs4846022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2625.000000,2383.000000, 0.524161,0.475839, maf-5-some-pop,maf-5-all-pops 674 chr1 11698901 11698902 rs6671295 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2802.000000,2206.000000, 0.559505,0.440495, maf-5-some-pop,maf-5-all-pops 674 chr1 11702154 11702155 rs7526268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2937.000000,2071.000000, 0.586462,0.413538, maf-5-some-pop,genotype-conflict 674 chr1 11717299 11717300 rs12139487 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop,maf-5-all-pops 674 chr1 11722687 11722688 rs3125815 0 - G G C/T genomic single unknown 0 0 near-gene-3,near-gene-5,untranslated-3 exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 824.000000,4184.000000,4184.000000,824.000000, 0.082268,0.417732,0.417732,0.082268, maf-5-some-pop 674 chr1 11727677 11727678 rs9430591 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop,genotype-conflict 674 chr1 11728893 11728894 rs3125818 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 4 A,C,G,T, 683.000000,4325.000000,4325.000000,683.000000, 0.068191,0.431809,0.431809,0.068191, maf-5-some-pop 674 chr1 11736599 11736600 rs2336030 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 3549.000000,1459.000000, 0.708666,0.291334, maf-5-some-pop,microattr-tpa,genotype-conflict 674 chr1 11746499 11746500 rs2143296 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4131.000000,877.000000,877.000000,4131.000000, 0.412440,0.087560,0.087560,0.412440, maf-5-some-pop,maf-5-all-pops 674 chr1 11749907 11749908 rs6694489 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4080.000000,928.000000, 0.814696,0.185304, maf-5-some-pop,maf-5-all-pops,genotype-conflict 674 chr1 11754586 11754587 rs988333 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4439.000000,569.000000,569.000000,4439.000000, 0.443191,0.056809,0.056809,0.443191, maf-5-some-pop 674 chr1 11758002 11758003 rs745806 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 4 A,C,G,T, 42.000000,4966.000000,4966.000000,42.000000, 0.004193,0.495807,0.495807,0.004193, genotype-conflict 674 chr1 11761251 11761252 rs1534991 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3706.000000,1302.000000,1302.000000,3706.000000, 0.370008,0.129992,0.129992,0.370008, maf-5-some-pop 674 chr1 11761502 11761503 rs1534989 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 751.000000,4257.000000,4257.000000,751.000000, 0.074980,0.425020,0.425020,0.074980, maf-5-some-pop,genotype-conflict 674 chr1 11763665 11763666 rs17037302 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 410.000000,4598.000000, 0.081869,0.918131, maf-5-some-pop 674 chr1 11763676 11763677 rs9430624 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1823.000000,3185.000000, 0.364018,0.635982, maf-5-some-pop,maf-5-all-pops 674 chr1 11764280 11764281 rs12045323 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3374.000000,1634.000000, 0.673722,0.326278, maf-5-some-pop 674 chr1 11770652 11770653 rs12731150 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2608.000000,2400.000000, 0.520767,0.479233, maf-5-some-pop,maf-5-all-pops 674 chr1 11772339 11772340 rs2336034 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop,genotype-conflict 674 chr1 11781972 11781973 rs6676319 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2590.000000,2418.000000, 0.517173,0.482827, maf-5-some-pop,maf-5-all-pops 674 chr1 11782780 11782781 rs7533583 0 + G G C/G genomic single unknown 0 0 unknown exact 1 MixedObserved 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2064.000000,2944.000000, 0.412141,0.587859, maf-5-some-pop,maf-5-all-pops 674 chr1 11782813 11782814 rs7414943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1936.000000,3072.000000, 0.386581,0.613419, maf-5-some-pop,maf-5-all-pops 674 chr1 11784117 11784118 rs7529001 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop,maf-5-all-pops 674 chr1 11788563 11788564 rs4846033 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,microattr-tpa 674 chr1 11790686 11790687 rs10864532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3339.000000,1669.000000, 0.666733,0.333267, maf-5-some-pop,maf-5-all-pops 675 chr1 11797825 11797826 rs11121814 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SC_SNP,TISHKOFF, 2 G,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 675 chr1 11798811 11798812 rs6419478 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop 675 chr1 11799227 11799228 rs6540992 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,genotype-conflict 675 chr1 11806850 11806851 rs6660106 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,genotype-conflict 675 chr1 11809844 11809845 rs6677313 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3627.000000,1381.000000, 0.724241,0.275759, maf-5-some-pop,maf-5-all-pops 675 chr1 11810843 11810844 rs11121821 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11814630 11814631 rs1133398 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3852.000000,1156.000000, 0.769169,0.230831, maf-5-some-pop 675 chr1 11815363 11815364 rs6661241 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop 675 chr1 11816091 11816092 rs6700513 0 + C C A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 3 A,C,G, 99.000000,4820.000000,89.000000, 0.019768,0.962460,0.017772, maf-5-some-pop 675 chr1 11828318 11828319 rs4845881 0 + G G A/G genomic single unknown 0 0 missense exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3064.000000,1944.000000, 0.611821,0.388179, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11831614 11831615 rs6667720 0 + C C C/T genomic single unknown 0 0 missense exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1521.000000,3487.000000, 0.303714,0.696286, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11834453 11834454 rs11121828 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2846.000000,2162.000000, 0.568291,0.431709, maf-5-some-pop,maf-5-all-pops 675 chr1 11837298 11837299 rs4846042 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop 675 chr1 11843166 11843167 rs4845882 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2159.000000,2849.000000, 0.431110,0.568890, maf-5-some-pop,maf-5-all-pops 675 chr1 11846251 11846252 rs4846048 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3538.000000,1470.000000, 0.706470,0.293530, maf-5-some-pop,maf-5-all-pops 675 chr1 11846446 11846447 rs4845884 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop 675 chr1 11853598 11853599 rs7535669 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 675 chr1 11854456 11854457 rs4846051 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 33 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SC_SNP,SEATTLESEQ,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 675 chr1 11854475 11854476 rs1801131 0 - T T A/C genomic single unknown 0 0 missense exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,APPLERA_GI,BCMHGSC_JDW,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,EXOME_CHIP,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,OMICIA,PERLEGEN,PHARMGKB_PAAR-SJCRH,PHARMGKB_PPII,SEATTLESEQ,SI_EXO,SNP500CANCER,SSMP,TISHKOFF, 4 A,C,G,T, 3759.000000,1249.000000,1249.000000,3759.000000, 0.375300,0.124700,0.124700,0.375300, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,submitted-by-lsdb,genotype-conflict 675 chr1 11854670 11854671 rs12121543 0 + C C A/C genomic single unknown 0 0 intron exact 1 NonIntegerChromCount 18 1000GENOMES,AFFY,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PHARMGKB_PPII,SC_SNP,SI_EXO,SNP500CANCER,SSMP,TISHKOFF, 2 A,C, 571.098999,2240.899902, 0.203094,0.796906, maf-5-some-pop,maf-5-all-pops 675 chr1 11862213 11862214 rs9651118 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1069.000000,3939.000000, 0.213458,0.786542, maf-5-some-pop,genotype-conflict 675 chr1 11862777 11862778 rs17367504 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PAGE_STUDY,PERLEGEN,TISHKOFF, 2 A,G, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop,microattr-tpa 675 chr1 11873786 11873787 rs17037429 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 842.000000,4166.000000, 0.168131,0.831869, maf-5-some-pop,maf-5-all-pops 675 chr1 11873868 11873869 rs12404124 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 G,T, 2024.000000,2984.000000, 0.404153,0.595847, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11876042 11876043 rs11121833 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4997.000000,11.000000, 0.997804,0.002196, 675 chr1 11876416 11876417 rs198391 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2036.000000,2972.000000, 0.406550,0.593450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11879266 11879267 rs2076001 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop,maf-5-all-pops 675 chr1 11883730 11883731 rs12567136 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11884146 11884147 rs2076003 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop 675 chr1 11887302 11887303 rs7537765 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4200.000000,808.000000, 0.838658,0.161342, maf-5-some-pop,maf-5-all-pops 675 chr1 11888383 11888384 rs198401 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2520.000000,2488.000000, 0.503195,0.496805, maf-5-some-pop,maf-5-all-pops 675 chr1 11889467 11889468 rs535107 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2991.000000,2017.000000, 0.597244,0.402756, maf-5-some-pop,maf-5-all-pops 675 chr1 11892649 11892650 rs2236797 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11896601 11896602 rs2075538 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop,maf-5-all-pops,genotype-conflict 675 chr1 11896653 11896654 rs198403 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop,genotype-conflict 675 chr1 11896826 11896827 rs198404 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,T, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 675 chr1 11897757 11897758 rs2075539 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 675 chr1 11899032 11899033 rs1023252 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3814.000000,1194.000000, 0.761581,0.238419, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 675 chr1 11900801 11900802 rs198413 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 C,T, 802.000000,4206.000000, 0.160144,0.839856, maf-5-some-pop 675 chr1 11900824 11900825 rs198414 0 + G G G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,SC_JCM,SEQUENOM,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop 675 chr1 11906067 11906068 rs5065 0 + A A A/G genomic single unknown 0 0 intron,stop-loss exact 1 32 1000GENOMES,ABI,AFFY,ARAVINDA,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PHARMGKB_PAT,PJP,RSG_JCVI,SC_JCM,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop 675 chr1 11907647 11907648 rs5063 0 - C C A/G genomic single unknown 0 0 ncRNA,missense exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,ARAVINDA,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_PAT,RSG_JCVI,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 368.000000,4640.000000,4640.000000,368.000000, 0.036741,0.463259,0.463259,0.036741, maf-5-some-pop 675 chr1 11908166 11908167 rs17376426 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,RSG_JCVI,SI_EXO, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 675 chr1 11909513 11909514 rs198372 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,RSG_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop 675 chr1 11910338 11910339 rs6694164 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 675 chr1 11915748 11915749 rs198381 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,RSG_JCVI,SC_JCM,SSAHASNP, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 675 chr1 11924026 11924027 rs12562819 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,genotype-conflict 675 chr1 11927055 11927056 rs12562952 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 676 chr1 11928713 11928714 rs1009592 0 - C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 676 chr1 11928829 11928830 rs1009591 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4198.000000,810.000000,810.000000,4198.000000, 0.419129,0.080871,0.080871,0.419129, maf-5-some-pop,microattr-tpa 676 chr1 11928894 11928895 rs11803049 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 897.000000,4111.000000, 0.179113,0.820887, maf-5-some-pop 676 chr1 11934841 11934842 rs4846064 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops 676 chr1 11938865 11938866 rs2008113 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2047.000000,2961.000000,2961.000000,2047.000000, 0.204373,0.295627,0.295627,0.204373, maf-5-some-pop,maf-5-all-pops,genotype-conflict 676 chr1 11939592 11939593 rs12741980 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 A,C, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 676 chr1 11941935 11941936 rs11588551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2170.000000,2838.000000, 0.433307,0.566693, maf-5-some-pop,maf-5-all-pops,genotype-conflict 676 chr1 11947956 11947957 rs6667637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2739.000000,2269.000000, 0.546925,0.453075, maf-5-some-pop,maf-5-all-pops 676 chr1 11949969 11949970 rs2336377 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3415.000000,1593.000000, 0.681909,0.318091, maf-5-some-pop,maf-5-all-pops,genotype-conflict 676 chr1 11951625 11951626 rs1321073 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2389.000000,2619.000000, 0.477037,0.522963, maf-5-some-pop,maf-5-all-pops 676 chr1 11952211 11952212 rs34175640 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2326.000000,2682.000000, 0.464457,0.535543, maf-5-some-pop,maf-5-all-pops 676 chr1 11960393 11960394 rs17346334 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 284.000000,4724.000000, 0.056709,0.943291, maf-5-some-pop,genotype-conflict 676 chr1 11971748 11971749 rs11800086 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2266.000000,2742.000000, 0.452476,0.547524, maf-5-some-pop,maf-5-all-pops 676 chr1 12008202 12008203 rs744754 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 134.000000,4874.000000,4874.000000,134.000000, 0.013379,0.486621,0.486621,0.013379, maf-5-some-pop 676 chr1 12009023 12009024 rs2336381 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop 676 chr1 12012327 12012328 rs11585018 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop 676 chr1 12018289 12018290 rs2273289 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1450.000000,3558.000000, 0.289537,0.710463, maf-5-some-pop,maf-5-all-pops 676 chr1 12019368 12019369 rs2180180 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3437.000000,1571.000000, 0.686302,0.313698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 676 chr1 12042260 12042261 rs2236055 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1791.000000,3217.000000, 0.357628,0.642372, maf-5-some-pop,maf-5-all-pops 676 chr1 12042754 12042755 rs4240897 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2329.000000,2679.000000, 0.465056,0.534944, maf-5-some-pop,maf-5-all-pops 676 chr1 12044163 12044164 rs1474868 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2992.000000,2016.000000,2016.000000,2992.000000, 0.298722,0.201278,0.201278,0.298722, maf-5-some-pop,maf-5-all-pops,microattr-tpa 676 chr1 12046062 12046063 rs2336384 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops,microattr-tpa 676 chr1 12046088 12046089 rs873458 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1726.000000,3282.000000,3282.000000,1726.000000, 0.172324,0.327676,0.327676,0.172324, maf-5-some-pop 676 chr1 12052404 12052405 rs6675934 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4734.000000,274.000000, 0.945288,0.054712, maf-5-some-pop 676 chr1 12053263 12053264 rs2878677 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3160.000000,1848.000000, 0.630990,0.369010, maf-5-some-pop,maf-5-all-pops 676 chr1 12054029 12054030 rs1810563 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3466.000000,1542.000000,1542.000000,3466.000000, 0.346046,0.153954,0.153954,0.346046, maf-5-some-pop,genotype-conflict 677 chr1 12059411 12059412 rs2295281 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2949.000000,2059.000000, 0.588858,0.411142, maf-5-some-pop,genotype-conflict 677 chr1 12060868 12060869 rs17037564 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop 677 chr1 12065169 12065170 rs3766742 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4663.000000,345.000000,345.000000,4663.000000, 0.465555,0.034445,0.034445,0.465555, maf-5-some-pop 677 chr1 12071432 12071433 rs3766741 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 677 chr1 12082880 12082881 rs11588779 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4195.000000,813.000000, 0.837660,0.162340, maf-5-some-pop 677 chr1 12082925 12082926 rs2295283 0 + A A A/G genomic single unknown 0 0 missense exact 1 32 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1656.000000,3352.000000, 0.330671,0.669329, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12085451 12085452 rs2878737 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3153.000000,1855.000000, 0.629593,0.370407, maf-5-some-pop,maf-5-all-pops 677 chr1 12094681 12094682 rs6658595 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, maf-5-some-pop 677 chr1 12105331 12105332 rs12759042 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1466.000000,3542.000000, 0.292732,0.707268, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12113239 12113240 rs6662024 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1622.000000,3386.000000, 0.323882,0.676118, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12117900 12117901 rs6665486 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2552.000000,2456.000000, 0.509585,0.490415, maf-5-some-pop,maf-5-all-pops 677 chr1 12119568 12119569 rs7554652 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,maf-5-all-pops 677 chr1 12135525 12135526 rs6690493 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 677 chr1 12140587 12140588 rs12138960 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3713.000000,1295.000000, 0.741414,0.258586, maf-5-some-pop,genotype-conflict 677 chr1 12144433 12144434 rs1201113 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 708.000000,4300.000000,4300.000000,708.000000, 0.070687,0.429313,0.429313,0.070687, maf-5-some-pop 677 chr1 12153187 12153188 rs1201110 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3569.000000,1439.000000,1439.000000,3569.000000, 0.356330,0.143670,0.143670,0.356330, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12153412 12153413 rs17037598 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop,genotype-conflict 677 chr1 12156235 12156236 rs11121855 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop 677 chr1 12157036 12157037 rs6665743 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,EGP_SNPS,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 677 chr1 12164136 12164137 rs4845895 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3064.000000,1944.000000, 0.611821,0.388179, maf-5-some-pop,maf-5-all-pops 677 chr1 12164436 12164437 rs2230622 0 + C C C/T genomic single unknown 0 0 coding-synon,untranslated-5 exact 1 28 1000GENOMES,ABI,AFFY,BL,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WICVAR,WI_SSAHASNP,YUSUKE, 2 C,T, 3542.000000,1466.000000, 0.707268,0.292732, maf-5-some-pop,maf-5-all-pops 677 chr1 12170973 12170974 rs11121868 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 677 chr1 12171011 12171012 rs11590366 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 677 chr1 12180123 12180124 rs646249 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3157.000000,1851.000000,1851.000000,3157.000000, 0.315196,0.184804,0.184804,0.315196, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12180376 12180377 rs644914 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 4939.000000,69.000000,69.000000,4939.000000, 0.493111,0.006889,0.006889,0.493111, maf-5-some-pop 677 chr1 12180804 12180805 rs501525 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3144.000000,1864.000000,1864.000000,3144.000000, 0.313898,0.186102,0.186102,0.313898, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12185035 12185036 rs664654 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops,genotype-conflict 677 chr1 12185532 12185533 rs11569909 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop 677 chr1 12187129 12187130 rs6668157 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop,genotype-conflict 677 chr1 12188481 12188482 rs1201122 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3394.000000,1614.000000,1614.000000,3394.000000, 0.338858,0.161142,0.161142,0.338858, maf-5-some-pop 677 chr1 12188613 12188614 rs17456501 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,genotype-conflict 678 chr1 12192252 12192253 rs7517758 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop 678 chr1 12192269 12192270 rs1201171 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1223.000000,3785.000000,3785.000000,1223.000000, 0.122105,0.377895,0.377895,0.122105, maf-5-some-pop,maf-5-all-pops 678 chr1 12192305 12192306 rs7551317 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop,genotype-conflict 678 chr1 12194450 12194451 rs1148472 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop 678 chr1 12194611 12194612 rs1148471 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2369.000000,2639.000000, 0.473043,0.526957, maf-5-some-pop,maf-5-all-pops 678 chr1 12194744 12194745 rs3766735 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 563.000000,4445.000000,4445.000000,563.000000, 0.056210,0.443790,0.443790,0.056210, maf-5-some-pop,genotype-conflict 678 chr1 12195728 12195729 rs6661027 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop 678 chr1 12204282 12204283 rs6673261 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EGP_SNPS,HGSV,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop 678 chr1 12205524 12205525 rs11121881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,genotype-conflict 678 chr1 12206314 12206315 rs1890586 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 40.000000,4968.000000, 0.007987,0.992013, 678 chr1 12216487 12216488 rs1148460 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3099.000000,1909.000000,1909.000000,3099.000000, 0.309405,0.190595,0.190595,0.309405, maf-5-some-pop,maf-5-all-pops 678 chr1 12217689 12217690 rs12075359 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 678 chr1 12217851 12217852 rs1148459 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3047.000000,1961.000000,1961.000000,3047.000000, 0.304213,0.195787,0.195787,0.304213, maf-5-some-pop,genotype-conflict 678 chr1 12223450 12223451 rs590368 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1263.000000,3745.000000,3745.000000,1263.000000, 0.126098,0.373902,0.373902,0.126098, maf-5-some-pop,genotype-conflict 678 chr1 12223481 12223482 rs590314 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1393.000000,3615.000000,3615.000000,1393.000000, 0.139077,0.360923,0.360923,0.139077, maf-5-some-pop,maf-5-all-pops 678 chr1 12223838 12223839 rs686190 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4712.000000,296.000000,296.000000,4712.000000, 0.470447,0.029553,0.029553,0.470447, maf-5-some-pop 678 chr1 12224238 12224239 rs522807 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 726.000000,4282.000000,4282.000000,726.000000, 0.072484,0.427516,0.427516,0.072484, maf-5-some-pop 678 chr1 12225350 12225351 rs652625 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PGA-UW-FHCRC,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 678 chr1 12230630 12230631 rs559011 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PGA-UW-FHCRC,PHARMGKB_PARC,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 678 chr1 12231653 12231654 rs12062134 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 678 chr1 12232515 12232516 rs11809661 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop 678 chr1 12232805 12232806 rs496888 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PGA-UW-FHCRC,PHARMGKB_PARC,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3627.000000,1381.000000,1381.000000,3627.000000, 0.362121,0.137879,0.137879,0.362121, maf-5-some-pop,maf-5-all-pops,genotype-conflict 678 chr1 12233007 12233008 rs494964 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PGA-UW-FHCRC,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 69.000000,4939.000000,4939.000000,69.000000, 0.006889,0.493111,0.493111,0.006889, maf-5-some-pop 678 chr1 12240414 12240415 rs5745984 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EGP_SNPS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP, 2 C,G, 4975.000000,33.000000, 0.993411,0.006589, 678 chr1 12248290 12248291 rs603151 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PGA-UW-FHCRC,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 678 chr1 12248502 12248503 rs5746001 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SSMP,TISHKOFF, 2 A,G, 554.000000,4454.000000, 0.110623,0.889377, maf-5-some-pop 678 chr1 12248738 12248739 rs5746003 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PGA-UW-FHCRC, 2 A,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 678 chr1 12249030 12249031 rs1201157 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1946.000000,3062.000000,3062.000000,1946.000000, 0.194289,0.305711,0.305711,0.194289, maf-5-some-pop,maf-5-all-pops,genotype-conflict 678 chr1 12249642 12249643 rs525891 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4022.000000,986.000000, 0.803115,0.196885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 678 chr1 12249769 12249770 rs548580 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop,maf-5-all-pops 678 chr1 12249987 12249988 rs550523 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 678 chr1 12250978 12250979 rs5746016 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,AFFY,CGM_KYOTO,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PGA-UW-FHCRC,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop 678 chr1 12251317 12251318 rs666078 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BL,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 712.000000,4296.000000,4296.000000,712.000000, 0.071086,0.428914,0.428914,0.071086, maf-5-some-pop 678 chr1 12262297 12262298 rs5746053 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PHARMGKB_PARC,SSMP,TISHKOFF, 2 A,G, 835.000000,4173.000000, 0.166733,0.833267, maf-5-some-pop,maf-5-all-pops 678 chr1 12262791 12262792 rs5746059 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,SSMP,TISHKOFF, 2 A,G, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop,genotype-conflict 678 chr1 12264354 12264355 rs235219 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,genotype-conflict 678 chr1 12267554 12267555 rs5746068 0 + C C C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 7 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 2 C,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 678 chr1 12267998 12267999 rs1061628 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PGA-UW-FHCRC,PHARMGKB_PARC,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3209.000000,1799.000000, 0.640775,0.359225, maf-5-some-pop,genotype-conflict 678 chr1 12268570 12268571 rs1800621 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 13 1000GENOMES,AFFY,BUSHMAN,EGP_SNPS,EVA-GONL,HGBASE,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SSMP,TISHKOFF, 2 A,G, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 678 chr1 12268720 12268721 rs5746074 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 14 1000GENOMES,AFFY,BUSHMAN,CGM_KYOTO,EGP_SNPS,EVA-GONL,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PHARMGKB_PARC,SSMP,TISHKOFF, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 678 chr1 12269706 12269707 rs742353 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,ILLUMINA,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF,TSC-CSHL, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 678 chr1 12269759 12269760 rs5746076 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,KRIBB_YJKIM,PGA-UW-FHCRC, 2 C,G, 4967.000000,41.000000, 0.991813,0.008187, maf-5-some-pop,genotype-conflict 678 chr1 12269946 12269947 rs235215 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2539.000000,2469.000000, 0.506989,0.493011, maf-5-some-pop,maf-5-all-pops 678 chr1 12277663 12277664 rs4846100 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 678 chr1 12279580 12279581 rs235237 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4579.000000,429.000000,429.000000,4579.000000, 0.457169,0.042831,0.042831,0.457169, maf-5-some-pop,genotype-conflict 678 chr1 12281272 12281273 rs17037861 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop 678 chr1 12306613 12306614 rs7547379 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop,genotype-conflict 678 chr1 12316370 12316371 rs235247 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 G,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop 678 chr1 12316583 12316584 rs235246 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop 679 chr1 12329294 12329295 rs3765339 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 787.000000,4221.000000,4221.000000,787.000000, 0.078574,0.421426,0.421426,0.078574, maf-5-some-pop 679 chr1 12339618 12339619 rs4845898 0 + A A A/T genomic single unknown 0 0 missense exact 1 21 1000GENOMES,AFFY,APPLERA_GI,BGI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop,genotype-conflict 679 chr1 12354306 12354307 rs12092335 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 679 chr1 12363810 12363811 rs7523900 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4313.000000,695.000000, 0.861222,0.138778, maf-5-some-pop 679 chr1 12373747 12373748 rs6685273 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,genotype-conflict 679 chr1 12418699 12418700 rs10864552 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 679 chr1 12420299 12420300 rs6660347 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 897.000000,4111.000000, 0.179113,0.820887, maf-5-some-pop 679 chr1 12426720 12426721 rs10864553 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4138.000000,870.000000, 0.826278,0.173722, maf-5-some-pop 679 chr1 12429610 12429611 rs2295338 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 324.000000,4684.000000,4684.000000,324.000000, 0.032348,0.467652,0.467652,0.032348, maf-5-some-pop 679 chr1 12436430 12436431 rs6541019 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop 679 chr1 12436897 12436898 rs17457661 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop,genotype-conflict 679 chr1 12440919 12440920 rs17423806 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BGI,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,T, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop,genotype-conflict 680 chr1 12458796 12458797 rs10492976 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,genotype-conflict 680 chr1 12463072 12463073 rs7547740 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3791.000000,1217.000000, 0.756989,0.243011, maf-5-some-pop,maf-5-all-pops 680 chr1 12488474 12488475 rs11121906 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop 680 chr1 12492581 12492582 rs6683371 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 680 chr1 12513377 12513378 rs639329 0 + A A A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 680 chr1 12515590 12515591 rs7519797 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4711.000000,297.000000, 0.940695,0.059305, maf-5-some-pop 680 chr1 12521028 12521029 rs12137084 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop 680 chr1 12526779 12526780 rs11121913 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 738.000000,4270.000000, 0.147364,0.852636, maf-5-some-pop,genotype-conflict 680 chr1 12533467 12533468 rs12408116 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 680 chr1 12546693 12546694 rs12125606 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop,genotype-conflict 680 chr1 12559765 12559766 rs17038046 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 46.000000,4962.000000, 0.009185,0.990815, maf-5-some-pop 680 chr1 12563237 12563238 rs7546762 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 680 chr1 12564126 12564127 rs11121916 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 G,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop 680 chr1 12564564 12564565 rs10864554 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,genotype-conflict 680 chr1 12575089 12575090 rs11121917 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 680 chr1 12581534 12581535 rs12565214 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 553.000000,4455.000000, 0.110423,0.889577, maf-5-some-pop 681 chr1 12606393 12606394 rs4845902 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop,genotype-conflict 681 chr1 12606724 12606725 rs10779770 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 681 chr1 12615068 12615069 rs6659122 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 681 chr1 12615534 12615535 rs7517198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop 681 chr1 12615887 12615888 rs11121928 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3591.000000,1417.000000, 0.717053,0.282947, maf-5-some-pop,maf-5-all-pops,genotype-conflict 681 chr1 12626209 12626210 rs6541038 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,C, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop,maf-5-all-pops 681 chr1 12626548 12626549 rs4846118 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3980.000000,1028.000000, 0.794728,0.205272, maf-5-some-pop,maf-5-all-pops 681 chr1 12627478 12627479 rs11121938 0 + C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,G, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop 681 chr1 12627679 12627680 rs4997711 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2866.000000,2142.000000, 0.572284,0.427716, maf-5-some-pop,maf-5-all-pops,genotype-conflict 681 chr1 12628636 12628637 rs4240900 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 681 chr1 12634033 12634034 rs4300229 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 G,T, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop 681 chr1 12634184 12634185 rs4845906 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2780.000000,2228.000000, 0.555112,0.444888, maf-5-some-pop,maf-5-all-pops 681 chr1 12637159 12637160 rs4845907 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2810.000000,2198.000000, 0.561102,0.438898, maf-5-some-pop,maf-5-all-pops 681 chr1 12638963 12638964 rs2275875 0 - T T A/G genomic single unknown 0 0 coding-synon,near-gene-3 exact 1 InconsistentAlleles 35 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 978.000000,4030.000000,4030.000000,978.000000, 0.097644,0.402356,0.402356,0.097644, maf-5-some-pop,maf-5-all-pops 681 chr1 12639167 12639168 rs3128461 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1123.000000,3885.000000,3885.000000,1123.000000, 0.112121,0.387879,0.387879,0.112121, maf-5-some-pop,maf-5-all-pops 681 chr1 12648865 12648866 rs3121607 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1006.000000,4002.000000, 0.200879,0.799121, maf-5-some-pop,genotype-conflict 681 chr1 12651472 12651473 rs4373773 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop 681 chr1 12652860 12652861 rs4240902 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 681 chr1 12653198 12653199 rs10864572 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 681 chr1 12663303 12663304 rs4846126 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2202.000000,2806.000000, 0.439696,0.560304, maf-5-some-pop,maf-5-all-pops,genotype-conflict 681 chr1 12668320 12668321 rs6541043 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops,genotype-conflict 681 chr1 12668830 12668831 rs12065616 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop 681 chr1 12671228 12671229 rs4394668 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1130.000000,3878.000000, 0.225639,0.774361, maf-5-some-pop,maf-5-all-pops,genotype-conflict 681 chr1 12671264 12671265 rs11121949 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops,genotype-conflict 681 chr1 12671323 12671324 rs4618985 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 3610.000000,1398.000000, 0.720847,0.279153, maf-5-some-pop,maf-5-all-pops 681 chr1 12671702 12671703 rs5022242 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2935.000000,2073.000000, 0.586062,0.413938, maf-5-some-pop,maf-5-all-pops 681 chr1 12672148 12672149 rs11121950 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1951.000000,3057.000000, 0.389577,0.610423, maf-5-some-pop 681 chr1 12672535 12672536 rs12046693 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 994.000000,4014.000000, 0.198482,0.801518, maf-5-some-pop 681 chr1 12683420 12683421 rs3000893 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4186.000000,822.000000,822.000000,4186.000000, 0.417931,0.082069,0.082069,0.417931, maf-5-some-pop,genotype-conflict 681 chr1 12684836 12684837 rs12402628 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3479.000000,1529.000000, 0.694688,0.305312, maf-5-some-pop 681 chr1 12686911 12686912 rs1892067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,genotype-conflict 681 chr1 12690118 12690119 rs12080789 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop 681 chr1 12693124 12693125 rs4845911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 816.000000,4192.000000, 0.162939,0.837061, maf-5-some-pop 681 chr1 12699336 12699337 rs3000891 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 939.000000,4069.000000,4069.000000,939.000000, 0.093750,0.406250,0.406250,0.093750, maf-5-some-pop,genotype-conflict 681 chr1 12699763 12699764 rs2489257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop 681 chr1 12700814 12700815 rs2489258 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 883.000000,4125.000000, 0.176318,0.823682, maf-5-some-pop 681 chr1 12702250 12702251 rs7526466 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop 681 chr1 12702392 12702393 rs7512542 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop 681 chr1 12709553 12709554 rs17458785 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1229.000000,3779.000000, 0.245407,0.754593, maf-5-some-pop,microattr-tpa,genotype-conflict 681 chr1 12710881 12710882 rs2493875 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 158.000000,4850.000000,4850.000000,158.000000, 0.015775,0.484225,0.484225,0.015775, maf-5-some-pop 682 chr1 12714227 12714228 rs6680005 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop 682 chr1 12717561 12717562 rs3010936 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,genotype-conflict 682 chr1 12724930 12724931 rs2027589 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1033.000000,3975.000000,3975.000000,1033.000000, 0.103135,0.396865,0.396865,0.103135, maf-5-some-pop,maf-5-all-pops 682 chr1 12730414 12730415 rs1857539 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1014.000000,3994.000000,3994.000000,1014.000000, 0.101238,0.398762,0.398762,0.101238, maf-5-some-pop,maf-5-all-pops 682 chr1 12734554 12734555 rs1892066 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3944.000000,1064.000000, 0.787540,0.212460, maf-5-some-pop,genotype-conflict 682 chr1 12734773 12734774 rs2265711 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop,genotype-conflict 682 chr1 12746536 12746537 rs7524074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3973.000000,1035.000000, 0.793331,0.206669, maf-5-some-pop 682 chr1 12753202 12753203 rs11121959 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 850.000000,4158.000000, 0.169728,0.830272, maf-5-some-pop 682 chr1 12756882 12756883 rs7547122 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3826.000000,1182.000000, 0.763978,0.236022, maf-5-some-pop,maf-5-all-pops 682 chr1 12757670 12757671 rs3010951 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop,maf-5-all-pops,genotype-conflict 682 chr1 12761389 12761390 rs3000877 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4920.000000,88.000000,88.000000,4920.000000, 0.491214,0.008786,0.008786,0.491214, maf-5-some-pop,genotype-conflict 682 chr1 12763888 12763889 rs3010868 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop 682 chr1 12765165 12765166 rs4568844 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1379.000000,3629.000000, 0.275359,0.724641, maf-5-some-pop,maf-5-all-pops,genotype-conflict 682 chr1 12770319 12770320 rs3000873 0 - T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 682 chr1 12775813 12775814 rs3000863 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 682 chr1 12775850 12775851 rs3000861 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1683.000000,3325.000000,3325.000000,1683.000000, 0.168031,0.331969,0.331969,0.168031, maf-5-some-pop,maf-5-all-pops 682 chr1 12776133 12776134 rs3010874 0 + C C A/C genomic single unknown 0 0 untranslated-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop,maf-5-all-pops 682 chr1 12780257 12780258 rs3010878 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop 682 chr1 12781915 12781916 rs17038427 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop 682 chr1 12783166 12783167 rs6698872 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops 682 chr1 12784231 12784232 rs3122569 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3533.000000,1475.000000, 0.705471,0.294529, maf-5-some-pop,maf-5-all-pops 682 chr1 12785092 12785093 rs4361998 0 + T T G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4030.000000,978.000000, 0.804712,0.195288, maf-5-some-pop,maf-5-all-pops 682 chr1 12785493 12785494 rs7513079 0 + G G G/T genomic single unknown 0 0 missense exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops 682 chr1 12785659 12785660 rs3000931 0 - G G A/C/G/T genomic single unknown 0 0 ncRNA,missense exact 1 SingleClassQuadAllelic 10 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,YSAMUELS, 4 A,C,G,T, 93.000000,4915.000000,4915.000000,93.000000, 0.009285,0.490715,0.490715,0.009285, clinically-assoc,maf-5-some-pop,submitted-by-lsdb,genotype-conflict 682 chr1 12785748 12785749 rs11121969 0 + C C C/T genomic single unknown 0 0 missense exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 682 chr1 12786322 12786323 rs4240904 0 + C C A/C/G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,WI_SSAHASNP, 3 C,G,T, 4516.000000,7.000000,485.000000, 0.901757,0.001398,0.096845, maf-5-some-pop,genotype-conflict 682 chr1 12786362 12786363 rs3010886 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1478.000000,3530.000000, 0.295128,0.704872, maf-5-some-pop,maf-5-all-pops 682 chr1 12788112 12788113 rs17038468 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 682 chr1 12788405 12788406 rs3000929 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4136.000000,872.000000,872.000000,4136.000000, 0.412939,0.087061,0.087061,0.412939, maf-5-some-pop,maf-5-all-pops,genotype-conflict 682 chr1 12799735 12799736 rs6541059 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,maf-5-all-pops 682 chr1 12803049 12803050 rs4603144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3486.000000,1522.000000, 0.696086,0.303914, maf-5-some-pop,maf-5-all-pops 682 chr1 12803556 12803557 rs10047037 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1523.000000,3485.000000, 0.304113,0.695887, maf-5-some-pop,maf-5-all-pops 682 chr1 12804401 12804402 rs3000922 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4139.000000,869.000000,869.000000,4139.000000, 0.413239,0.086761,0.086761,0.413239, maf-5-some-pop,maf-5-all-pops 682 chr1 12805935 12805936 rs17038489 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop,maf-5-all-pops 682 chr1 12806195 12806196 rs3000920 0 - C C G/T genomic single unknown 0 0 untranslated-5 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 826.000000,4182.000000,4182.000000,826.000000, 0.082468,0.417532,0.417532,0.082468, maf-5-some-pop 682 chr1 12808590 12808591 rs11809649 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop 682 chr1 12813273 12813274 rs9943106 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop 682 chr1 12813521 12813522 rs4548455 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,T, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop,genotype-conflict 682 chr1 12816315 12816316 rs10746500 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1404.000000,3604.000000, 0.280351,0.719649, maf-5-some-pop,genotype-conflict 682 chr1 12818840 12818841 rs12097286 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4464.000000,544.000000, 0.891374,0.108626, maf-5-some-pop 682 chr1 12819062 12819063 rs3795746 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 682 chr1 12821074 12821075 rs12059239 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop 682 chr1 12824579 12824580 rs10864584 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1770.000000,3238.000000, 0.353435,0.646565, maf-5-some-pop,maf-5-all-pops 682 chr1 12830012 12830013 rs2884717 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 183.000000,4825.000000,4825.000000,183.000000, 0.018271,0.481729,0.481729,0.018271, maf-5-some-pop 682 chr1 12831480 12831481 rs1008475 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 682 chr1 12834252 12834253 rs4282833 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1132.000000,3876.000000, 0.226038,0.773962, maf-5-some-pop,maf-5-all-pops 682 chr1 12835867 12835868 rs1812242 0 - T T A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1420.000000,3588.000000,3588.000000,1420.000000, 0.141773,0.358227,0.358227,0.141773, maf-5-some-pop,maf-5-all-pops,genotype-conflict 682 chr1 12836441 12836442 rs2076216 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 171.000000,4837.000000,4837.000000,171.000000, 0.017073,0.482927,0.482927,0.017073, maf-5-some-pop,genotype-conflict 682 chr1 12837839 12837840 rs848577 0 - G G C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 683 chr1 12852747 12852748 rs12567807 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4608.000000,400.000000, 0.920128,0.079872, maf-5-some-pop,maf-5-all-pops 683 chr1 12852871 12852872 rs2223390 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4282.000000,726.000000,726.000000,4282.000000, 0.427516,0.072484,0.072484,0.427516, maf-5-some-pop,genotype-conflict 683 chr1 12857862 12857863 rs11811816 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 683 chr1 12858052 12858053 rs1736769 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 697.000000,4311.000000,4311.000000,697.000000, 0.069589,0.430411,0.430411,0.069589, maf-5-some-pop,maf-5-all-pops 683 chr1 12858444 12858445 rs1769778 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1795.000000,3213.000000,3213.000000,1795.000000, 0.179213,0.320787,0.320787,0.179213, maf-5-some-pop,maf-5-all-pops 683 chr1 12882984 12882985 rs9728329 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,KRIBB_YJKIM, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 683 chr1 12909238 12909239 rs12354366 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop,maf-5-all-pops 683 chr1 12910135 12910136 rs1856638 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop,genotype-conflict 683 chr1 12911095 12911096 rs41468748 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,GMI,SSMP, 4 A,C,G,T, 387.000000,4621.000000,4621.000000,387.000000, 0.038638,0.461362,0.461362,0.038638, 683 chr1 12913147 12913148 rs17039272 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop,genotype-conflict 683 chr1 12915846 12915847 rs12135103 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 683 chr1 12918078 12918079 rs11122008 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4638.000000,370.000000, 0.926118,0.073882, maf-5-some-pop,maf-5-all-pops 684 chr1 12994589 12994590 rs10864597 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 AFFY,SC_SNP,SSMP, 0 684 chr1 12998267 12998268 rs7525044 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 AFFY,KRIBB_YJKIM, 0 684 chr1 13013116 13013117 rs11122073 0 + C C C/T genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 4 1000GENOMES,ENSEMBL,SC_SNP,SSMP, 2 A,G, 37.000000,4971.000000, 0.007388,0.992612, 690 chr1 13775025 13775026 rs10927559 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4311.000000,697.000000, 0.860823,0.139177, maf-5-some-pop,genotype-conflict 690 chr1 13793391 13793392 rs3013086 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1667.000000,3341.000000, 0.332867,0.667133, maf-5-some-pop,maf-5-all-pops 690 chr1 13795448 13795449 rs3013090 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1956.000000,3052.000000, 0.390575,0.609425, maf-5-some-pop,maf-5-all-pops 690 chr1 13797710 13797711 rs2924863 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4669.000000,339.000000,339.000000,4669.000000, 0.466154,0.033846,0.033846,0.466154, maf-5-some-pop 690 chr1 13798032 13798033 rs3013094 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 690 chr1 13800134 13800135 rs3013101 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop,maf-5-all-pops 690 chr1 13802223 13802224 rs3795750 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SEQUENOM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1742.000000,3266.000000, 0.347843,0.652157, maf-5-some-pop,maf-5-all-pops,genotype-conflict 690 chr1 13802324 13802325 rs3013105 0 + T T C/T genomic single unknown 0 0 missense exact 1 25 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 2314.000000,2694.000000, 0.462061,0.537939, maf-5-some-pop,genotype-conflict 690 chr1 13802436 13802437 rs3013106 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1626.000000,3382.000000, 0.324681,0.675319, maf-5-some-pop,maf-5-all-pops 690 chr1 13803886 13803887 rs2924854 0 - A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 690 chr1 13804339 13804340 rs2940309 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop 690 chr1 13804574 13804575 rs16850548 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4272.000000,736.000000, 0.853035,0.146965, maf-5-some-pop,genotype-conflict 690 chr1 13809226 13809227 rs3845608 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4755.000000,253.000000,253.000000,4755.000000, 0.474740,0.025260,0.025260,0.474740, maf-5-some-pop 690 chr1 13813461 13813462 rs454765 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 548.000000,4460.000000,4460.000000,548.000000, 0.054712,0.445288,0.445288,0.054712, maf-5-some-pop 690 chr1 13815791 13815792 rs375996 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4032.000000,976.000000,976.000000,4032.000000, 0.402556,0.097444,0.097444,0.402556, maf-5-some-pop,maf-5-all-pops 690 chr1 13821128 13821129 rs164868 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2004.000000,3004.000000, 0.400160,0.599840, maf-5-some-pop,maf-5-all-pops 690 chr1 13826841 13826842 rs354572 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 205.000000,4803.000000,4803.000000,205.000000, 0.020467,0.479533,0.479533,0.020467, maf-5-some-pop 690 chr1 13827438 13827439 rs10803381 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop 690 chr1 13835009 13835010 rs3013055 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3190.000000,1818.000000, 0.636981,0.363019, maf-5-some-pop,maf-5-all-pops 690 chr1 13837628 13837629 rs2940305 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,genotype-conflict 690 chr1 13838041 13838042 rs2990679 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2672.000000,2336.000000, 0.533546,0.466454, maf-5-some-pop,maf-5-all-pops 690 chr1 13841054 13841055 rs2990683 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3116.000000,1892.000000, 0.622204,0.377796, maf-5-some-pop,maf-5-all-pops 690 chr1 13842511 13842512 rs2282188 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,YUSUKE, 2 C,T, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop 690 chr1 13842585 13842586 rs2282189 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3833.000000,1175.000000, 0.765375,0.234625, maf-5-some-pop 690 chr1 13846422 13846423 rs12029242 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop 690 chr1 13846920 13846921 rs16851140 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop 690 chr1 13847664 13847665 rs410922 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1404.000000,3604.000000,3604.000000,1404.000000, 0.140176,0.359824,0.359824,0.140176, maf-5-some-pop 690 chr1 13852954 13852955 rs12750399 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2319.000000,2689.000000, 0.463059,0.536941, maf-5-some-pop,maf-5-all-pops 690 chr1 13855607 13855608 rs12072110 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop 690 chr1 13855634 13855635 rs12068106 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 690 chr1 13855757 13855758 rs12124179 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3598.000000,1410.000000, 0.718450,0.281550, maf-5-some-pop,maf-5-all-pops 690 chr1 13859569 13859570 rs3856278 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop,maf-5-all-pops,genotype-conflict 690 chr1 13861989 13861990 rs11805703 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 995.000000,4013.000000, 0.198682,0.801318, maf-5-some-pop,maf-5-all-pops 690 chr1 13862749 13862750 rs6661954 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop,maf-5-all-pops,genotype-conflict 690 chr1 13871941 13871942 rs3013061 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1929.000000,3079.000000, 0.385184,0.614816, maf-5-some-pop,maf-5-all-pops 690 chr1 13872987 13872988 rs10927854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop 690 chr1 13873607 13873608 rs367102 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3078.000000,1930.000000, 0.614617,0.385383, maf-5-some-pop,maf-5-all-pops 690 chr1 13874852 13874853 rs1610562 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2075.000000,2933.000000, 0.414337,0.585663, maf-5-some-pop,maf-5-all-pops 690 chr1 13875609 13875610 rs17391912 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 690 chr1 13875895 13875896 rs13375580 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 1507.000000,3501.000000, 0.300919,0.699081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 690 chr1 13876263 13876264 rs354581 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2392.000000,2616.000000, 0.477636,0.522364, maf-5-some-pop 690 chr1 13885202 13885203 rs10927872 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 691 chr1 13900467 13900468 rs655839 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2628.000000,2380.000000, 0.524760,0.475240, maf-5-some-pop,maf-5-all-pops 691 chr1 13905217 13905218 rs12735797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1467.000000,3541.000000, 0.292931,0.707069, maf-5-some-pop 691 chr1 13906526 13906527 rs2885135 0 - G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 691 chr1 13906553 13906554 rs2361030 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1159.000000,3849.000000,3849.000000,1159.000000, 0.115715,0.384285,0.384285,0.115715, maf-5-some-pop,genotype-conflict 691 chr1 13909141 13909142 rs355023 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1442.000000,3566.000000, 0.287939,0.712061, maf-5-some-pop 691 chr1 13914229 13914230 rs1148455 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2617.000000,2391.000000, 0.522564,0.477436, maf-5-some-pop,maf-5-all-pops 691 chr1 13916001 13916002 rs3845612 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop,genotype-conflict 691 chr1 13916808 13916809 rs434651 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3600.000000,1408.000000, 0.718850,0.281150, maf-5-some-pop,genotype-conflict 691 chr1 13918628 13918629 rs2990672 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3690.000000,1318.000000, 0.736821,0.263179, maf-5-some-pop,maf-5-all-pops 691 chr1 13918827 13918828 rs12034614 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop 691 chr1 13920166 13920167 rs16852000 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,genotype-conflict 691 chr1 13920192 13920193 rs1261025 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2349.000000,2659.000000,2659.000000,2349.000000, 0.234525,0.265475,0.265475,0.234525, maf-5-some-pop,maf-5-all-pops 691 chr1 13922116 13922117 rs12566684 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop,genotype-conflict 691 chr1 13931158 13931159 rs12039416 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 691 chr1 13932006 13932007 rs2788749 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 691 chr1 13934055 13934056 rs2483133 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,YUSUKE, 2 C,T, 1289.000000,3719.000000, 0.257388,0.742612, maf-5-some-pop 691 chr1 13935401 13935402 rs92406 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3392.000000,1616.000000,1616.000000,3392.000000, 0.338658,0.161342,0.161342,0.338658, maf-5-some-pop,maf-5-all-pops 691 chr1 13936952 13936953 rs12080985 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop 691 chr1 13937088 13937089 rs2487643 0 + G G G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 1694.000000,3314.000000, 0.338259,0.661741, maf-5-some-pop,maf-5-all-pops 691 chr1 13937280 13937281 rs4391657 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4122.000000,886.000000, 0.823083,0.176917, maf-5-some-pop 691 chr1 13937898 13937899 rs2487647 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1559.000000,3449.000000, 0.311302,0.688698, maf-5-some-pop,maf-5-all-pops 691 chr1 13938376 13938377 rs1412838 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 2831.000000,2177.000000, 0.565296,0.434704, maf-5-some-pop,maf-5-all-pops 691 chr1 13938510 13938511 rs1412839 0 + A A A/C genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP,YUSUKE, 2 A,C, 1633.000000,3375.000000, 0.326078,0.673922, maf-5-some-pop,maf-5-all-pops 691 chr1 13942901 13942902 rs12131411 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 691 chr1 13943723 13943724 rs1061615 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 996.000000,4012.000000, 0.198882,0.801118, maf-5-some-pop 691 chr1 13944567 13944568 rs876931 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2579.000000,2429.000000, 0.514976,0.485024, maf-5-some-pop 691 chr1 13946496 13946497 rs11587701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,genotype-conflict 691 chr1 13946867 13946868 rs1767676 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1263.000000,3745.000000, 0.252196,0.747804, maf-5-some-pop,maf-5-all-pops 691 chr1 13947518 13947519 rs1772636 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4016.000000,992.000000,992.000000,4016.000000, 0.400958,0.099042,0.099042,0.400958, maf-5-some-pop,genotype-conflict 691 chr1 13948046 13948047 rs12085273 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop 691 chr1 13948224 13948225 rs1772635 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3907.000000,1101.000000,1101.000000,3907.000000, 0.390076,0.109924,0.109924,0.390076, maf-5-some-pop,maf-5-all-pops,genotype-conflict 691 chr1 13948764 13948765 rs10927910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 691 chr1 13949086 13949087 rs17390405 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop 691 chr1 13949773 13949774 rs16852419 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 691 chr1 13949830 13949831 rs16852432 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop 691 chr1 13954852 13954853 rs10803420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2854.000000,2154.000000, 0.569888,0.430112, maf-5-some-pop,maf-5-all-pops 691 chr1 13955151 13955152 rs12409667 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop,genotype-conflict 691 chr1 13956483 13956484 rs10803421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, maf-5-some-pop,maf-5-all-pops 691 chr1 13957404 13957405 rs12143609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3625.000000,1383.000000, 0.723842,0.276158, maf-5-some-pop,maf-5-all-pops 691 chr1 13960280 13960281 rs12060059 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3987.000000,1021.000000, 0.796126,0.203874, maf-5-some-pop 691 chr1 13967843 13967844 rs4661998 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 655.000000,4353.000000, 0.130791,0.869209, maf-5-some-pop 691 chr1 13968703 13968704 rs11799571 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 640.000000,4368.000000, 0.127796,0.872204, maf-5-some-pop 691 chr1 13972071 13972072 rs12063638 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop,genotype-conflict 691 chr1 13973168 13973169 rs11799368 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 691 chr1 13973249 13973250 rs12561812 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 G,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop 691 chr1 13988255 13988256 rs6677791 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 691 chr1 13988402 13988403 rs2495024 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 753.000000,4255.000000, 0.150359,0.849641, maf-5-some-pop 691 chr1 13989226 13989227 rs2486182 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3860.000000,1148.000000,1148.000000,3860.000000, 0.385383,0.114617,0.114617,0.385383, maf-5-some-pop 691 chr1 13990257 13990258 rs2495029 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 754.000000,4254.000000, 0.150559,0.849441, maf-5-some-pop 691 chr1 13990290 13990291 rs2495030 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop,genotype-conflict 691 chr1 13994227 13994228 rs12076662 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 691 chr1 14014662 14014663 rs2487655 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop,genotype-conflict 691 chr1 14020404 14020405 rs4077841 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSAHASNP,TSC-CSHL, 2 C,T, 824.000000,4184.000000, 0.164537,0.835463, maf-5-some-pop,maf-5-all-pops,genotype-conflict 692 chr1 14040029 14040030 rs2495053 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4532.000000,476.000000,476.000000,4532.000000, 0.452476,0.047524,0.047524,0.452476, maf-5-some-pop,genotype-conflict 692 chr1 14043025 14043026 rs12049438 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop 692 chr1 14043423 14043424 rs12025538 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4187.000000,821.000000, 0.836062,0.163938, maf-5-some-pop 692 chr1 14043608 14043609 rs4344326 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop 692 chr1 14045393 14045394 rs6429794 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3712.000000,1296.000000, 0.741214,0.258786, maf-5-some-pop,maf-5-all-pops 692 chr1 14048198 14048199 rs2495051 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 692 chr1 14053473 14053474 rs16852866 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop 692 chr1 14055067 14055068 rs2473229 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 89.000000,4919.000000,4919.000000,89.000000, 0.008886,0.491114,0.491114,0.008886, 692 chr1 14055708 14055709 rs10489151 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 4 A,C,G,T, 1027.000000,3981.000000,3981.000000,1027.000000, 0.102536,0.397464,0.397464,0.102536, maf-5-some-pop 692 chr1 14067207 14067208 rs1203631 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3902.000000,1106.000000,1106.000000,3902.000000, 0.389577,0.110423,0.110423,0.389577, maf-5-some-pop,maf-5-all-pops 692 chr1 14067850 14067851 rs1203630 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 787.000000,4221.000000,4221.000000,787.000000, 0.078574,0.421426,0.421426,0.078574, maf-5-some-pop 692 chr1 14070825 14070826 rs1203628 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop 692 chr1 14080681 14080682 rs1203682 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 692 chr1 14096419 14096420 rs2359756 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2643.000000,2365.000000, 0.527756,0.472244, maf-5-some-pop,maf-5-all-pops 692 chr1 14096456 14096457 rs2235523 0 - T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 692 chr1 14096634 14096635 rs2884788 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop 692 chr1 14096820 14096821 rs1210110 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4137.000000,871.000000,871.000000,4137.000000, 0.413039,0.086961,0.086961,0.413039, maf-5-some-pop,genotype-conflict 692 chr1 14104817 14104818 rs11579363 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop 692 chr1 14105297 14105298 rs1203678 0 - G G C/T genomic single unknown 0 0 coding-synon,intron exact 1 InconsistentAlleles 30 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1584.000000,3424.000000,3424.000000,1584.000000, 0.158147,0.341853,0.341853,0.158147, maf-5-some-pop,genotype-conflict 692 chr1 14109113 14109114 rs1203651 0 - A A C/T genomic single unknown 0 0 coding-synon,intron exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3180.000000,1828.000000,1828.000000,3180.000000, 0.317492,0.182508,0.182508,0.317492, maf-5-some-pop,maf-5-all-pops 692 chr1 14112748 14112749 rs1203647 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSAHASNP,SSMP, 4 A,C,G,T, 4134.000000,874.000000,874.000000,4134.000000, 0.412740,0.087260,0.087260,0.412740, maf-5-some-pop 692 chr1 14116327 14116328 rs12033212 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BGI,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop 692 chr1 14117227 14117228 rs11580688 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop,genotype-conflict 692 chr1 14117875 14117876 rs1980472 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 692 chr1 14118118 14118119 rs1980471 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 692 chr1 14118407 14118408 rs1203644 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 692 chr1 14119084 14119085 rs1203642 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 4135.000000,873.000000,873.000000,4135.000000, 0.412839,0.087161,0.087161,0.412839, maf-5-some-pop 692 chr1 14119149 14119150 rs16852976 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop 692 chr1 14119338 14119339 rs11581840 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop 692 chr1 14120246 14120247 rs1203640 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,YUSUKE, 4 A,C,G,T, 864.000000,4144.000000,4144.000000,864.000000, 0.086262,0.413738,0.413738,0.086262, maf-5-some-pop,maf-5-all-pops,genotype-conflict 692 chr1 14120431 14120432 rs1203639 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1692.000000,3316.000000,3316.000000,1692.000000, 0.168930,0.331070,0.331070,0.168930, maf-5-some-pop,maf-5-all-pops 692 chr1 14125209 14125210 rs1015370 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 887.000000,4121.000000,4121.000000,887.000000, 0.088558,0.411442,0.411442,0.088558, maf-5-some-pop 692 chr1 14125226 14125227 rs2744692 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 874.000000,4134.000000,4134.000000,874.000000, 0.087260,0.412740,0.412740,0.087260, maf-5-some-pop 692 chr1 14125495 14125496 rs2697992 0 + G G C/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 3 C,G,N, 2549.000000,509.000000,2.000000, 0.833007,0.166340,0.000654, maf-5-some-pop,genotype-conflict 692 chr1 14126452 14126453 rs2014788 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3037.000000,1971.000000,1971.000000,3037.000000, 0.303215,0.196785,0.196785,0.303215, maf-5-some-pop,genotype-conflict 692 chr1 14127642 14127643 rs2281168 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1898.000000,3110.000000,3110.000000,1898.000000, 0.189497,0.310503,0.310503,0.189497, maf-5-some-pop,maf-5-all-pops 692 chr1 14128151 14128152 rs2281166 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3050.000000,1958.000000,1958.000000,3050.000000, 0.304513,0.195487,0.195487,0.304513, maf-5-some-pop,maf-5-all-pops 692 chr1 14128825 14128826 rs2235520 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 218.000000,4790.000000,4790.000000,218.000000, 0.021765,0.478235,0.478235,0.021765, maf-5-some-pop 692 chr1 14130627 14130628 rs2281164 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4045.000000,963.000000,963.000000,4045.000000, 0.403854,0.096146,0.096146,0.403854, maf-5-some-pop 692 chr1 14130676 14130677 rs1203672 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop 692 chr1 14133418 14133419 rs2697985 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 692 chr1 14133464 14133465 rs2463871 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4505.000000,503.000000,503.000000,4505.000000, 0.449780,0.050220,0.050220,0.449780, maf-5-some-pop 692 chr1 14134153 14134154 rs2244634 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4007.000000,1001.000000,1001.000000,4007.000000, 0.400060,0.099940,0.099940,0.400060, maf-5-some-pop,maf-5-all-pops,genotype-conflict 692 chr1 14135716 14135717 rs2235519 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 74.000000,4934.000000,4934.000000,74.000000, 0.007388,0.492612,0.492612,0.007388, maf-5-some-pop 692 chr1 14136435 14136436 rs2235518 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4081.000000,927.000000,927.000000,4081.000000, 0.407448,0.092552,0.092552,0.407448, maf-5-some-pop 692 chr1 14145913 14145914 rs1810474 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1670.000000,3338.000000,3338.000000,1670.000000, 0.166733,0.333267,0.333267,0.166733, maf-5-some-pop 692 chr1 14146712 14146713 rs12085812 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop 692 chr1 14148409 14148410 rs11807771 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 G,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop 692 chr1 14148440 14148441 rs2697971 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1420.000000,3588.000000,3588.000000,1420.000000, 0.141773,0.358227,0.358227,0.141773, maf-5-some-pop,maf-5-all-pops,genotype-conflict 692 chr1 14150031 14150032 rs2697967 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3302.000000,1706.000000,1706.000000,3302.000000, 0.329673,0.170327,0.170327,0.329673, maf-5-some-pop,maf-5-all-pops 692 chr1 14150137 14150138 rs3820012 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,YUSUKE, 4 A,C,G,T, 277.000000,4731.000000,4731.000000,277.000000, 0.027656,0.472344,0.472344,0.027656, maf-5-some-pop 692 chr1 14150991 14150992 rs2697962 0 - T T A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 912.000000,4096.000000,4096.000000,912.000000, 0.091054,0.408946,0.408946,0.091054, maf-5-some-pop,maf-5-all-pops 692 chr1 14155054 14155055 rs2495090 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 1970.000000,3038.000000,3038.000000,1970.000000, 0.196685,0.303315,0.303315,0.196685, maf-5-some-pop,maf-5-all-pops 693 chr1 14156650 14156651 rs12092520 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop 693 chr1 14157576 14157577 rs2697983 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 808.000000,4200.000000, 0.161342,0.838658, maf-5-some-pop,genotype-conflict 693 chr1 14157985 14157986 rs2495082 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 929.000000,4079.000000,4079.000000,929.000000, 0.092752,0.407248,0.407248,0.092752, maf-5-some-pop,maf-5-all-pops 693 chr1 14159448 14159449 rs6693629 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,SSMP, 2 A,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop 693 chr1 14162022 14162023 rs1203690 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 662.000000,4346.000000,4346.000000,662.000000, 0.066094,0.433906,0.433906,0.066094, maf-5-some-pop,genotype-conflict 693 chr1 14180831 14180832 rs2744669 0 - T T A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 746.000000,1250.000000, 0.373747,0.626253, maf-5-some-pop,maf-5-all-pops 693 chr1 14185581 14185582 rs6675055 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,genotype-conflict 693 chr1 14185681 14185682 rs6665674 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 693 chr1 14190031 14190032 rs956604 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,genotype-conflict 693 chr1 14190294 14190295 rs17346826 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop 693 chr1 14190327 14190328 rs10927942 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop 693 chr1 14192525 14192526 rs1203660 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2576.000000,2432.000000,2432.000000,2576.000000, 0.257188,0.242812,0.242812,0.257188, maf-5-some-pop,maf-5-all-pops 693 chr1 14192949 14192950 rs7537478 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4517.000000,491.000000, 0.901957,0.098043, maf-5-some-pop 693 chr1 14196211 14196212 rs16853069 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 646.000000,4362.000000, 0.128994,0.871006, maf-5-some-pop,maf-5-all-pops 693 chr1 14202879 14202880 rs17350963 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 693 chr1 14204008 14204009 rs2744657 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 4 A,C,G,T, 9.000000,4999.000000,4999.000000,9.000000, 0.000899,0.499101,0.499101,0.000899, 693 chr1 14208023 14208024 rs10754901 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2209.000000,2799.000000, 0.441094,0.558906, maf-5-some-pop 693 chr1 14209685 14209686 rs1203699 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 693 chr1 14209940 14209941 rs4557966 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2706.000000,2302.000000, 0.540335,0.459665, maf-5-some-pop,maf-5-all-pops 693 chr1 14213962 14213963 rs12091229 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop 693 chr1 14214347 14214348 rs1528787 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3327.000000,1681.000000,1681.000000,3327.000000, 0.332169,0.167831,0.167831,0.332169, maf-5-some-pop,maf-5-all-pops,genotype-conflict 693 chr1 14214473 14214474 rs1528785 0 - T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 693 chr1 14216112 14216113 rs1881559 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,genotype-conflict 693 chr1 14216149 14216150 rs17350970 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 693 chr1 14216925 14216926 rs2744650 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 693 chr1 14217673 14217674 rs2744649 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2416.000000,2592.000000,2592.000000,2416.000000, 0.241214,0.258786,0.258786,0.241214, maf-5-some-pop,maf-5-all-pops 693 chr1 14218866 14218867 rs2744648 0 - A A G/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 470.000000,4538.000000,4538.000000,470.000000, 0.046925,0.453075,0.453075,0.046925, maf-5-some-pop,genotype-conflict 693 chr1 14220185 14220186 rs1358577 0 + A A A/G genomic single unknown 0 0 missense exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3427.000000,1581.000000, 0.684305,0.315695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 693 chr1 14220818 14220819 rs11576840 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 3433.000000,1575.000000, 0.685503,0.314497, maf-5-some-pop,maf-5-all-pops 693 chr1 14220941 14220942 rs2744647 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 474.000000,4534.000000,4534.000000,474.000000, 0.047324,0.452676,0.452676,0.047324, maf-5-some-pop,genotype-conflict 693 chr1 14223722 14223723 rs7522358 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4115.000000,893.000000, 0.821685,0.178315, maf-5-some-pop 693 chr1 14224998 14224999 rs2038095 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3095.000000,1913.000000,1913.000000,3095.000000, 0.309006,0.190994,0.190994,0.309006, maf-5-some-pop,maf-5-all-pops,genotype-conflict 693 chr1 14225156 14225157 rs10927950 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 693 chr1 14225372 14225373 rs12086572 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3648.000000,1360.000000, 0.728435,0.271565, maf-5-some-pop,maf-5-all-pops 693 chr1 14226408 14226409 rs6677556 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4101.000000,907.000000, 0.818890,0.181110, maf-5-some-pop,maf-5-all-pops 693 chr1 14226607 14226608 rs2744645 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 907.000000,4101.000000,4101.000000,907.000000, 0.090555,0.409445,0.409445,0.090555, maf-5-some-pop 693 chr1 14228076 14228077 rs6429800 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop 693 chr1 14228489 14228490 rs1203709 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1731.000000,3277.000000,3277.000000,1731.000000, 0.172823,0.327177,0.327177,0.172823, maf-5-some-pop,maf-5-all-pops 693 chr1 14232890 14232891 rs7536590 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3957.000000,1051.000000, 0.790136,0.209864, maf-5-some-pop,maf-5-all-pops 693 chr1 14232928 14232929 rs7543809 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1087.000000,3921.000000, 0.217053,0.782947, maf-5-some-pop 693 chr1 14240591 14240592 rs2143087 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 4269.000000,739.000000,739.000000,4269.000000, 0.426218,0.073782,0.073782,0.426218, maf-5-some-pop 693 chr1 14240695 14240696 rs1005297 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL, 2 C,T, 4277.000000,731.000000, 0.854034,0.145966, maf-5-some-pop,genotype-conflict 693 chr1 14241623 14241624 rs12028358 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4524.000000,484.000000, 0.903355,0.096645, maf-5-some-pop 693 chr1 14243516 14243517 rs10927953 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 2209.000000,2799.000000, 0.441094,0.558906, maf-5-some-pop,maf-5-all-pops 693 chr1 14246930 14246931 rs11580525 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop 693 chr1 14249236 14249237 rs12563157 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 480.000000,4528.000000, 0.095847,0.904153, maf-5-some-pop 693 chr1 14249564 14249565 rs10927957 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1795.000000,3213.000000, 0.358427,0.641573, maf-5-some-pop,maf-5-all-pops,genotype-conflict 693 chr1 14250673 14250674 rs6429804 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2837.000000,2171.000000, 0.566494,0.433506, maf-5-some-pop,maf-5-all-pops 693 chr1 14252246 14252247 rs1534946 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4432.000000,576.000000,576.000000,4432.000000, 0.442492,0.057508,0.057508,0.442492, maf-5-some-pop 693 chr1 14252289 14252290 rs12125090 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop 693 chr1 14253565 14253566 rs10489150 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4406.000000,602.000000,602.000000,4406.000000, 0.439896,0.060104,0.060104,0.439896, maf-5-some-pop,microattr-tpa 693 chr1 14253820 14253821 rs10927959 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2129.000000,2879.000000, 0.425120,0.574880, maf-5-some-pop,maf-5-all-pops,genotype-conflict 693 chr1 14254539 14254540 rs6670657 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 877.000000,4131.000000, 0.175120,0.824880, maf-5-some-pop 693 chr1 14254635 14254636 rs6670754 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop,maf-5-all-pops 693 chr1 14254749 14254750 rs6661262 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2340.000000,2668.000000, 0.467252,0.532748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 693 chr1 14255113 14255114 rs12127981 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 724.000000,4284.000000, 0.144569,0.855431, maf-5-some-pop,maf-5-all-pops 693 chr1 14255209 14255210 rs7535450 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1267.000000,3741.000000, 0.252995,0.747005, maf-5-some-pop,maf-5-all-pops 693 chr1 14255977 14255978 rs7538374 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop 693 chr1 14256044 14256045 rs7522327 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 693 chr1 14256245 14256246 rs1005302 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 4537.000000,471.000000,471.000000,4537.000000, 0.452975,0.047025,0.047025,0.452975, maf-5-some-pop,genotype-conflict 693 chr1 14257198 14257199 rs16853208 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 693 chr1 14257666 14257667 rs6685990 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops 693 chr1 14257760 14257761 rs12029613 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 693 chr1 14260219 14260220 rs12133241 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop 693 chr1 14262211 14262212 rs12034432 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 693 chr1 14262576 14262577 rs10399935 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,EVA-GONL,GMI,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop,maf-5-all-pops 693 chr1 14274202 14274203 rs12135874 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop 693 chr1 14274231 14274232 rs12136764 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop 693 chr1 14275182 14275183 rs12135494 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 693 chr1 14275578 14275579 rs12567296 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 706.000000,4302.000000, 0.140974,0.859026, maf-5-some-pop 693 chr1 14277731 14277732 rs10927968 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop,genotype-conflict 693 chr1 14277863 14277864 rs4661455 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2224.000000,2784.000000, 0.444089,0.555911, maf-5-some-pop,maf-5-all-pops 693 chr1 14278580 14278581 rs10803437 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,T, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop 693 chr1 14278990 14278991 rs7532844 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,T, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 693 chr1 14279840 14279841 rs7533120 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop 693 chr1 14280561 14280562 rs2359896 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop,microattr-tpa 693 chr1 14280584 14280585 rs10803438 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop 693 chr1 14282744 14282745 rs11589608 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2821.000000,2187.000000, 0.563299,0.436701, maf-5-some-pop 693 chr1 14283443 14283444 rs16853268 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4396.000000,612.000000, 0.877796,0.122204, maf-5-some-pop 694 chr1 14288118 14288119 rs12044299 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop,genotype-conflict 694 chr1 14289508 14289509 rs12092233 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4586.000000,422.000000, 0.915735,0.084265, maf-5-some-pop 694 chr1 14294604 14294605 rs2076503 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3939.000000,1069.000000,1069.000000,3939.000000, 0.393271,0.106729,0.106729,0.393271, maf-5-some-pop,genotype-conflict 694 chr1 14294748 14294749 rs6429815 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop 694 chr1 14295461 14295462 rs2884821 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2707.000000,2301.000000, 0.540535,0.459465, maf-5-some-pop,maf-5-all-pops 694 chr1 14295512 14295513 rs978631 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 157.000000,4851.000000,4851.000000,157.000000, 0.015675,0.484325,0.484325,0.015675, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14297109 14297110 rs10927972 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2302.000000,2706.000000, 0.459665,0.540335, maf-5-some-pop,maf-5-all-pops 694 chr1 14297219 14297220 rs12024045 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3929.000000,1079.000000, 0.784545,0.215455, maf-5-some-pop,genotype-conflict 694 chr1 14297682 14297683 rs10803442 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2838.000000,2170.000000, 0.566693,0.433307, maf-5-some-pop,maf-5-all-pops 694 chr1 14297919 14297920 rs7543394 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2176.000000,2832.000000, 0.434505,0.565495, maf-5-some-pop,maf-5-all-pops 694 chr1 14299649 14299650 rs10927973 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1220.000000,3788.000000, 0.243610,0.756390, maf-5-some-pop 694 chr1 14300091 14300092 rs2359898 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,genotype-conflict 694 chr1 14301433 14301434 rs12028225 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3558.000000,1450.000000, 0.710463,0.289537, maf-5-some-pop,maf-5-all-pops 694 chr1 14301801 14301802 rs12123608 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop,maf-5-all-pops 694 chr1 14301941 14301942 rs16853319 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop,genotype-conflict 694 chr1 14304768 14304769 rs2359900 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 707.000000,4301.000000, 0.141174,0.858826, maf-5-some-pop,maf-5-all-pops 694 chr1 14305081 14305082 rs10927978 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop 694 chr1 14306506 14306507 rs12563104 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,SSMP, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop,maf-5-all-pops 694 chr1 14311373 14311374 rs7539510 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 484.000000,4524.000000, 0.096645,0.903355, maf-5-some-pop 694 chr1 14313273 14313274 rs12728009 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4271.000000,737.000000, 0.852835,0.147165, maf-5-some-pop,maf-5-all-pops 694 chr1 14313479 14313480 rs10489148 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 555.000000,4453.000000,4453.000000,555.000000, 0.055411,0.444589,0.444589,0.055411, maf-5-some-pop 694 chr1 14314552 14314553 rs7525185 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3014.000000,1994.000000, 0.601837,0.398163, maf-5-some-pop,maf-5-all-pops 694 chr1 14314579 14314580 rs6678410 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4338.000000,670.000000, 0.866214,0.133786, maf-5-some-pop 694 chr1 14315683 14315684 rs12125722 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4351.000000,657.000000, 0.868810,0.131190, maf-5-some-pop,genotype-conflict 694 chr1 14319716 14319717 rs12738601 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 620.000000,4388.000000, 0.123802,0.876198, maf-5-some-pop 694 chr1 14320349 14320350 rs12127946 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop 694 chr1 14320650 14320651 rs6691183 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 763.000000,4245.000000, 0.152356,0.847644, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14320862 14320863 rs6693784 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 694 chr1 14320889 14320890 rs12081727 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop 694 chr1 14322388 14322389 rs11585369 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop 694 chr1 14337600 14337601 rs17351165 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 452.000000,4556.000000, 0.090256,0.909744, maf-5-some-pop,genotype-conflict 694 chr1 14337880 14337881 rs6657972 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 694 chr1 14337925 14337926 rs6689299 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1821.000000,3187.000000, 0.363618,0.636382, maf-5-some-pop,maf-5-all-pops 694 chr1 14337936 14337937 rs6698891 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop 694 chr1 14337993 14337994 rs6689383 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1265.000000,3743.000000, 0.252596,0.747404, maf-5-some-pop,genotype-conflict 694 chr1 14338327 14338328 rs6429820 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3566.000000,1442.000000, 0.712061,0.287939, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14340184 14340185 rs17353372 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop,genotype-conflict 694 chr1 14340227 14340228 rs10927994 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2509.000000,2499.000000, 0.500998,0.499002, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14340279 14340280 rs10803449 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3174.000000,1834.000000, 0.633786,0.366214, maf-5-some-pop,maf-5-all-pops 694 chr1 14344054 14344055 rs6691889 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2307.000000,2701.000000, 0.460663,0.539337, maf-5-some-pop,maf-5-all-pops 694 chr1 14344913 14344914 rs12078958 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 576.000000,4432.000000, 0.115016,0.884984, maf-5-some-pop 694 chr1 14345543 14345544 rs4661465 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2476.000000,2532.000000, 0.494409,0.505591, maf-5-some-pop,maf-5-all-pops 694 chr1 14345813 14345814 rs6429823 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop 694 chr1 14345826 14345827 rs7512633 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop 694 chr1 14346017 14346018 rs7515012 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4147.000000,861.000000, 0.828075,0.171925, maf-5-some-pop 694 chr1 14346628 14346629 rs7520101 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 829.000000,4179.000000, 0.165535,0.834465, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14348250 14348251 rs926570 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 694 chr1 14350081 14350082 rs10927996 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2361.000000,2647.000000, 0.471446,0.528554, maf-5-some-pop,maf-5-all-pops 694 chr1 14358806 14358807 rs2206587 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4516.000000,492.000000,492.000000,4516.000000, 0.450879,0.049121,0.049121,0.450879, maf-5-some-pop 694 chr1 14359355 14359356 rs970898 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 767.000000,4241.000000,4241.000000,767.000000, 0.076577,0.423423,0.423423,0.076577, maf-5-some-pop 694 chr1 14359779 14359780 rs7414562 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2115.000000,2893.000000, 0.422324,0.577676, maf-5-some-pop,maf-5-all-pops 694 chr1 14363684 14363685 rs7527265 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 717.000000,4291.000000, 0.143171,0.856829, maf-5-some-pop 694 chr1 14364962 14364963 rs2359910 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1372.000000,3636.000000, 0.273962,0.726038, maf-5-some-pop,maf-5-all-pops 694 chr1 14365327 14365328 rs6693685 0 + A A A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop,genotype-conflict 694 chr1 14367634 14367635 rs1079989 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 1648.000000,3360.000000,3360.000000,1648.000000, 0.164537,0.335463,0.335463,0.164537, maf-5-some-pop,maf-5-all-pops 694 chr1 14367958 14367959 rs1079988 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1647.000000,3361.000000,3361.000000,1647.000000, 0.164437,0.335563,0.335563,0.164437, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14368586 14368587 rs9660152 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3356.000000,1652.000000, 0.670128,0.329872, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14370244 14370245 rs6657363 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1980.000000,3028.000000, 0.395367,0.604633, maf-5-some-pop,maf-5-all-pops 694 chr1 14370367 14370368 rs6662320 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2407.000000,2601.000000, 0.480631,0.519369, maf-5-some-pop,maf-5-all-pops 694 chr1 14372399 14372400 rs16853497 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4676.000000,332.000000, 0.933706,0.066294, maf-5-some-pop,maf-5-all-pops 694 chr1 14373155 14373156 rs4662090 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3027.000000,1981.000000, 0.604433,0.395567, maf-5-some-pop,maf-5-all-pops,genotype-conflict 694 chr1 14373177 14373178 rs4662091 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1110.000000,3898.000000, 0.221645,0.778355, maf-5-some-pop,maf-5-all-pops 694 chr1 14373219 14373220 rs17351284 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop 694 chr1 14373472 14373473 rs4661467 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1106.000000,3902.000000, 0.220847,0.779153, maf-5-some-pop,maf-5-all-pops 694 chr1 14376223 14376224 rs17353495 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 694 chr1 14376798 14376799 rs12748863 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 694 chr1 14377913 14377914 rs4662093 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop 694 chr1 14377937 14377938 rs16853513 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 694 chr1 14377965 14377966 rs4662094 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 473.000000,4535.000000, 0.094449,0.905551, maf-5-some-pop 694 chr1 14380325 14380326 rs7519048 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop,genotype-conflict 694 chr1 14381534 14381535 rs4662098 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 565.000000,4443.000000, 0.112819,0.887181, maf-5-some-pop,maf-5-all-pops 694 chr1 14386962 14386963 rs10489147 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4597.000000,411.000000,411.000000,4597.000000, 0.458966,0.041034,0.041034,0.458966, maf-5-some-pop 694 chr1 14388299 14388300 rs16853528 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop 694 chr1 14390136 14390137 rs10733143 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2249.000000,2759.000000, 0.449081,0.550919, maf-5-some-pop,genotype-conflict 694 chr1 14391319 14391320 rs16853532 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop,genotype-conflict 694 chr1 14397802 14397803 rs742545 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1111.000000,3897.000000, 0.221845,0.778155, maf-5-some-pop 694 chr1 14398150 14398151 rs12740636 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,C, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop 694 chr1 14399298 14399299 rs12131514 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 G,T, 4537.000000,471.000000, 0.905950,0.094049, maf-5-some-pop 694 chr1 14399626 14399627 rs12746681 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4127.000000,881.000000, 0.824081,0.175919, maf-5-some-pop,maf-5-all-pops 694 chr1 14401349 14401350 rs2246175 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1798.000000,3210.000000,3210.000000,1798.000000, 0.179513,0.320487,0.320487,0.179513, maf-5-some-pop,maf-5-all-pops 694 chr1 14403791 14403792 rs17351318 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 694 chr1 14406740 14406741 rs12037685 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1008.000000,4000.000000, 0.201278,0.798722, maf-5-some-pop,genotype-conflict 694 chr1 14408014 14408015 rs3817959 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1392.000000,3616.000000,3616.000000,1392.000000, 0.138978,0.361022,0.361022,0.138978, maf-5-some-pop,maf-5-all-pops 694 chr1 14408107 14408108 rs3817958 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,YUSUKE, 4 A,C,G,T, 4527.000000,481.000000,481.000000,4527.000000, 0.451977,0.048023,0.048023,0.451977, maf-5-some-pop 694 chr1 14409126 14409127 rs11586306 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop 694 chr1 14410211 14410212 rs16853565 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 470.000000,4538.000000, 0.093850,0.906150, maf-5-some-pop 694 chr1 14410737 14410738 rs12409852 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 694 chr1 14417166 14417167 rs11589207 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 695 chr1 14420139 14420140 rs16853584 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop 695 chr1 14423008 14423009 rs4661471 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop,genotype-conflict 695 chr1 14429249 14429250 rs11590117 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1608.000000,3400.000000, 0.321086,0.678914, maf-5-some-pop,maf-5-all-pops 695 chr1 14439041 14439042 rs7515917 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14439208 14439209 rs13374167 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3257.000000,1751.000000, 0.650359,0.349641, maf-5-some-pop,maf-5-all-pops 695 chr1 14439899 14439900 rs10928013 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1752.000000,3256.000000, 0.349840,0.650160, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14441383 14441384 rs7519796 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1202.000000,3806.000000, 0.240016,0.759984, maf-5-some-pop 695 chr1 14441737 14441738 rs10928016 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 695 chr1 14444424 14444425 rs2157565 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4087.000000,921.000000,921.000000,4087.000000, 0.408047,0.091953,0.091953,0.408047, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14444652 14444653 rs2157564 0 - T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 695 chr1 14445792 14445793 rs916430 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3720.000000,1288.000000,1288.000000,3720.000000, 0.371406,0.128594,0.128594,0.371406, maf-5-some-pop,maf-5-all-pops 695 chr1 14446516 14446517 rs4662104 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3020.000000,1988.000000, 0.603035,0.396965, maf-5-some-pop,maf-5-all-pops 695 chr1 14449770 14449771 rs744007 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3144.000000,1864.000000,1864.000000,3144.000000, 0.313898,0.186102,0.186102,0.313898, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14450544 14450545 rs10429936 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3137.000000,1871.000000, 0.626398,0.373602, maf-5-some-pop,maf-5-all-pops 695 chr1 14453002 14453003 rs4578218 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3264.000000,1744.000000, 0.651757,0.348243, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14455747 14455748 rs16853613 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 695 chr1 14460355 14460356 rs7546559 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 695 chr1 14460642 14460643 rs2227241 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3281.000000,1727.000000,1727.000000,3281.000000, 0.327576,0.172424,0.172424,0.327576, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14460985 14460986 rs2213847 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3278.000000,1730.000000,1730.000000,3278.000000, 0.327276,0.172724,0.172724,0.327276, maf-5-some-pop,maf-5-all-pops 695 chr1 14461134 14461135 rs4662114 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop,maf-5-all-pops 695 chr1 14462048 14462049 rs10737922 0 + A A A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1789.000000,3219.000000, 0.357228,0.642772, maf-5-some-pop,maf-5-all-pops 695 chr1 14463066 14463067 rs6671072 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3783.000000,1225.000000, 0.755391,0.244609, maf-5-some-pop 695 chr1 14463223 14463224 rs6671183 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1947.000000,3061.000000, 0.388778,0.611222, maf-5-some-pop,maf-5-all-pops 695 chr1 14464166 14464167 rs10803459 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3137.000000,1871.000000, 0.626398,0.373602, maf-5-some-pop,maf-5-all-pops 695 chr1 14464951 14464952 rs966927 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 695 chr1 14467592 14467593 rs4662120 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1475.000000,3533.000000, 0.294529,0.705471, maf-5-some-pop,maf-5-all-pops 695 chr1 14468556 14468557 rs1934656 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3308.000000,1700.000000,1700.000000,3308.000000, 0.330272,0.169728,0.169728,0.330272, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14468675 14468676 rs12083756 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 40.000000,4968.000000, 0.007987,0.992013, maf-5-some-pop 695 chr1 14468900 14468901 rs10803463 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3237.000000,1771.000000, 0.646366,0.353634, maf-5-some-pop,maf-5-all-pops 695 chr1 14469985 14469986 rs4662124 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2456.000000,2552.000000, 0.490415,0.509585, maf-5-some-pop,maf-5-all-pops 695 chr1 14470808 14470809 rs10928034 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3208.000000,1800.000000, 0.640575,0.359425, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14474714 14474715 rs11586283 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 1823.000000,3185.000000, 0.364018,0.635982, maf-5-some-pop,maf-5-all-pops 695 chr1 14477943 14477944 rs929125 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1605.000000,3403.000000,3403.000000,1605.000000, 0.160244,0.339756,0.339756,0.160244, maf-5-some-pop,maf-5-all-pops 695 chr1 14486565 14486566 rs10928041 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 695 chr1 14487283 14487284 rs10928043 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop 695 chr1 14489018 14489019 rs7545744 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1058.000000,3950.000000, 0.211262,0.788738, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14490496 14490497 rs9803674 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14490628 14490629 rs10429930 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 925.000000,4083.000000, 0.184704,0.815296, maf-5-some-pop,maf-5-all-pops 695 chr1 14491008 14491009 rs2884843 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1975.000000,3033.000000, 0.394369,0.605631, maf-5-some-pop,maf-5-all-pops 695 chr1 14494769 14494770 rs6692603 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop,maf-5-all-pops 695 chr1 14495002 14495003 rs10489144 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 4 A,C,G,T, 724.000000,4284.000000,4284.000000,724.000000, 0.072284,0.427716,0.427716,0.072284, maf-5-some-pop 695 chr1 14495069 14495070 rs12045417 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,G, 765.000000,4243.000000, 0.152756,0.847244, maf-5-some-pop,maf-5-all-pops 695 chr1 14495223 14495224 rs12092197 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop,maf-5-all-pops 695 chr1 14495894 14495895 rs10489143 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,microattr-tpa 695 chr1 14496137 14496138 rs10465643 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SC_SNP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 695 chr1 14496718 14496719 rs1339372 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 772.000000,4236.000000,4236.000000,772.000000, 0.077077,0.422923,0.422923,0.077077, maf-5-some-pop,maf-5-all-pops 695 chr1 14497556 14497557 rs2359953 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 772.000000,4236.000000, 0.154153,0.845847, maf-5-some-pop,maf-5-all-pops 695 chr1 14500562 14500563 rs4145433 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 772.000000,4236.000000,4236.000000,772.000000, 0.077077,0.422923,0.422923,0.077077, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14500605 14500606 rs4145435 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 766.000000,4242.000000,4242.000000,766.000000, 0.076478,0.423522,0.423522,0.076478, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14502161 14502162 rs12028521 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4039.000000,969.000000, 0.806510,0.193490, maf-5-some-pop,maf-5-all-pops 695 chr1 14505594 14505595 rs646835 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3469.000000,1539.000000, 0.692692,0.307308, maf-5-some-pop,maf-5-all-pops 695 chr1 14507528 14507529 rs526188 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2619.000000,2389.000000, 0.522963,0.477037, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14507541 14507542 rs675997 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1461.000000,3547.000000,3547.000000,1461.000000, 0.145867,0.354133,0.354133,0.145867, maf-5-some-pop,maf-5-all-pops 695 chr1 14507738 14507739 rs10754914 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2208.000000,2800.000000, 0.440895,0.559105, maf-5-some-pop,maf-5-all-pops 695 chr1 14508548 14508549 rs495937 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4139.000000,869.000000, 0.826478,0.173522, maf-5-some-pop,genotype-conflict 695 chr1 14508692 14508693 rs11580833 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1691.000000,3317.000000, 0.337660,0.662340, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14509275 14509276 rs577987 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4232.000000,776.000000, 0.845048,0.154952, maf-5-some-pop 695 chr1 14509675 14509676 rs16853736 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 695 chr1 14510163 14510164 rs12736835 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3122.000000,1886.000000, 0.623403,0.376597, maf-5-some-pop,maf-5-all-pops 695 chr1 14512985 14512986 rs565765 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2932.000000,2076.000000,2076.000000,2932.000000, 0.292732,0.207268,0.207268,0.292732, maf-5-some-pop,maf-5-all-pops 695 chr1 14520872 14520873 rs11582149 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 571.000000,4437.000000, 0.114018,0.885982, maf-5-some-pop 695 chr1 14523179 14523180 rs568434 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4783.000000,225.000000,225.000000,4783.000000, 0.477536,0.022464,0.022464,0.477536, maf-5-some-pop,genotype-conflict 695 chr1 14527849 14527850 rs515603 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2652.000000,2356.000000, 0.529553,0.470447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 695 chr1 14531406 14531407 rs529819 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,genotype-conflict 695 chr1 14539547 14539548 rs659483 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 695 chr1 14539781 14539782 rs560285 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2012.000000,2996.000000, 0.401757,0.598243, maf-5-some-pop,maf-5-all-pops 695 chr1 14540676 14540677 rs7518617 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 696 chr1 14553661 14553662 rs12723920 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3238.000000,1770.000000, 0.646565,0.353435, maf-5-some-pop,maf-5-all-pops 696 chr1 14559080 14559081 rs4478803 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop,maf-5-all-pops 696 chr1 14559106 14559107 rs4565709 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3277.000000,1731.000000, 0.654353,0.345647, maf-5-some-pop,maf-5-all-pops,genotype-conflict 696 chr1 14564259 14564260 rs7544219 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop 696 chr1 14564700 14564701 rs1953828 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 696 chr1 14566619 14566620 rs10803476 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2996.000000,2012.000000, 0.598243,0.401757, maf-5-some-pop,maf-5-all-pops 696 chr1 14566720 14566721 rs10928054 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 4975.000000,33.000000, 0.993411,0.006589, 696 chr1 14567242 14567243 rs1361336 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1608.000000,3400.000000,3400.000000,1608.000000, 0.160543,0.339457,0.339457,0.160543, maf-5-some-pop,maf-5-all-pops 696 chr1 14567690 14567691 rs12024171 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop,maf-5-all-pops 696 chr1 14575461 14575462 rs6693453 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop,genotype-conflict 696 chr1 14575841 14575842 rs6662041 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4237.000000,771.000000, 0.846046,0.153954, maf-5-some-pop,genotype-conflict 696 chr1 14577473 14577474 rs4631686 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1110.000000,3898.000000, 0.221645,0.778355, maf-5-some-pop,genotype-conflict 696 chr1 14579772 14579773 rs6673240 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3060.000000,1948.000000, 0.611022,0.388978, maf-5-some-pop,maf-5-all-pops,genotype-conflict 696 chr1 14583471 14583472 rs12403871 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4351.000000,657.000000, 0.868810,0.131190, maf-5-some-pop 696 chr1 14586317 14586318 rs10754915 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop 696 chr1 14586393 14586394 rs10492981 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop 696 chr1 14586541 14586542 rs4662137 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2223.000000,2785.000000, 0.443890,0.556110, maf-5-some-pop,maf-5-all-pops 696 chr1 14586553 14586554 rs4662138 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4419.000000,589.000000, 0.882388,0.117612, maf-5-some-pop 696 chr1 14586954 14586955 rs6667451 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 994.000000,4014.000000, 0.198482,0.801518, maf-5-some-pop 696 chr1 14593176 14593177 rs10803478 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop,maf-5-all-pops 696 chr1 14606001 14606002 rs16853867 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4969.000000,39.000000, 0.992212,0.007788, maf-5-some-pop 696 chr1 14620368 14620369 rs16853880 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4272.000000,736.000000, 0.853035,0.146965, maf-5-some-pop,genotype-conflict 696 chr1 14620538 14620539 rs10928063 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1851.000000,3157.000000, 0.369609,0.630391, maf-5-some-pop,maf-5-all-pops 696 chr1 14622769 14622770 rs1538534 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4592.000000,416.000000,416.000000,4592.000000, 0.458466,0.041534,0.041534,0.458466, maf-5-some-pop 696 chr1 14622822 14622823 rs12058269 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 696 chr1 14623469 14623470 rs6668724 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop,maf-5-all-pops 696 chr1 14623933 14623934 rs10927406 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3200.000000,1808.000000, 0.638978,0.361022, maf-5-some-pop,genotype-conflict 696 chr1 14625523 14625524 rs7527386 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops 696 chr1 14631624 14631625 rs12143153 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4514.000000,494.000000, 0.901358,0.098642, maf-5-some-pop 696 chr1 14634802 14634803 rs1578131 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4430.000000,578.000000,578.000000,4430.000000, 0.442292,0.057708,0.057708,0.442292, maf-5-some-pop,maf-5-all-pops 696 chr1 14638611 14638612 rs3737643 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 650.000000,4358.000000,4358.000000,650.000000, 0.064896,0.435104,0.435104,0.064896, maf-5-some-pop,genotype-conflict 696 chr1 14639145 14639146 rs12042048 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop 696 chr1 14647666 14647667 rs16853931 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 696 chr1 14648254 14648255 rs16853939 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 696 chr1 14648386 14648387 rs16853943 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop 696 chr1 14648591 14648592 rs16853946 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4494.000000,514.000000, 0.897364,0.102636, maf-5-some-pop 696 chr1 14648970 14648971 rs16853948 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop,maf-5-all-pops 696 chr1 14649004 14649005 rs16853950 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 696 chr1 14652781 14652782 rs2149507 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2148.000000,2860.000000, 0.428914,0.571086, maf-5-some-pop,maf-5-all-pops 696 chr1 14655423 14655424 rs16853960 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 696 chr1 14657198 14657199 rs16853966 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop,maf-5-all-pops 696 chr1 14662280 14662281 rs820622 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP, 4 A,C,G,T, 2963.000000,2045.000000,2045.000000,2963.000000, 0.295827,0.204173,0.204173,0.295827, maf-5-some-pop,maf-5-all-pops,genotype-conflict 696 chr1 14662718 14662719 rs820621 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3951.000000,1057.000000,1057.000000,3951.000000, 0.394469,0.105531,0.105531,0.394469, maf-5-some-pop,maf-5-all-pops 696 chr1 14665130 14665131 rs11803759 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4486.000000,522.000000, 0.895767,0.104233, maf-5-some-pop 696 chr1 14668268 14668269 rs2993797 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2857.000000,2151.000000, 0.570487,0.429513, maf-5-some-pop,maf-5-all-pops 696 chr1 14670763 14670764 rs2789742 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop 696 chr1 14673024 14673025 rs2789746 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1961.000000,3047.000000, 0.391573,0.608427, maf-5-some-pop 696 chr1 14673270 14673271 rs2794612 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop 696 chr1 14673384 14673385 rs12121975 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4003.000000,1005.000000, 0.799321,0.200679, maf-5-some-pop,maf-5-all-pops 696 chr1 14677728 14677729 rs12134023 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 738.000000,4270.000000, 0.147364,0.852636, maf-5-some-pop,genotype-conflict 697 chr1 14690875 14690876 rs4661486 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4342.000000,666.000000, 0.867013,0.132987, maf-5-some-pop,genotype-conflict 697 chr1 14694257 14694258 rs7548984 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 765.000000,4243.000000, 0.152756,0.847244, maf-5-some-pop 697 chr1 14697488 14697489 rs12407887 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 622.000000,4386.000000, 0.124201,0.875799, maf-5-some-pop 697 chr1 14701689 14701690 rs6429656 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1234.000000,3774.000000, 0.246406,0.753594, maf-5-some-pop 697 chr1 14702517 14702518 rs17396659 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop 697 chr1 14704440 14704441 rs6689141 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,maf-5-all-pops,genotype-conflict 697 chr1 14704675 14704676 rs735832 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops,genotype-conflict 697 chr1 14707650 14707651 rs820667 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1976.000000,3032.000000, 0.394569,0.605431, maf-5-some-pop,maf-5-all-pops 697 chr1 14708128 14708129 rs4415555 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1371.000000,3637.000000, 0.273762,0.726238, maf-5-some-pop,maf-5-all-pops 697 chr1 14719942 14719943 rs1556085 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,genotype-conflict 697 chr1 14720008 14720009 rs1328828 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop,maf-5-all-pops 697 chr1 14720661 14720662 rs4503336 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 2 C,T, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop,maf-5-all-pops 697 chr1 14725945 14725946 rs12048115 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 829.000000,4179.000000, 0.165535,0.834465, maf-5-some-pop,genotype-conflict 697 chr1 14725969 14725970 rs16850206 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 697 chr1 14726095 14726096 rs820668 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 72.000000,4936.000000,4936.000000,72.000000, 0.007188,0.492812,0.492812,0.007188, maf-5-some-pop 697 chr1 14726122 14726123 rs12045738 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 830.000000,4178.000000, 0.165735,0.834265, maf-5-some-pop 697 chr1 14726395 14726396 rs12122566 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 697 chr1 14731582 14731583 rs1328830 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1270.000000,3738.000000,3738.000000,1270.000000, 0.126797,0.373203,0.373203,0.126797, maf-5-some-pop,maf-5-all-pops 697 chr1 14732198 14732199 rs12023531 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 881.000000,4127.000000, 0.175919,0.824081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 697 chr1 14741574 14741575 rs6662750 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1980.000000,3028.000000, 0.395367,0.604633, maf-5-some-pop,maf-5-all-pops 697 chr1 14742102 14742103 rs6699064 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops 697 chr1 14742722 14742723 rs10754855 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop 697 chr1 14743971 14743972 rs4573512 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 697 chr1 14744590 14744591 rs12119451 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4235.000000,773.000000, 0.845647,0.154353, maf-5-some-pop,maf-5-all-pops,genotype-conflict 697 chr1 14744788 14744789 rs12130603 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop,maf-5-all-pops 697 chr1 14757239 14757240 rs12130873 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 4703.000000,305.000000, 0.939097,0.060903, maf-5-some-pop,genotype-conflict 697 chr1 14760633 14760634 rs2183102 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3060.000000,1948.000000, 0.611022,0.388978, maf-5-some-pop,maf-5-all-pops 697 chr1 14761481 14761482 rs4661493 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop 697 chr1 14761671 14761672 rs6680164 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3255.000000,1753.000000, 0.649960,0.350040, maf-5-some-pop,maf-5-all-pops 697 chr1 14766668 14766669 rs1079221 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4311.000000,697.000000,697.000000,4311.000000, 0.430411,0.069589,0.069589,0.430411, maf-5-some-pop 697 chr1 14767076 14767077 rs7547198 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4136.000000,872.000000, 0.825879,0.174121, maf-5-some-pop 697 chr1 14773231 14773232 rs12085004 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 697 chr1 14773655 14773656 rs6659859 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop 697 chr1 14775549 14775550 rs4450012 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 697 chr1 14776731 14776732 rs6659078 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2318.000000,2690.000000, 0.462859,0.537141, maf-5-some-pop,maf-5-all-pops 697 chr1 14778405 14778406 rs6668363 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1022.000000,3986.000000, 0.204073,0.795927, maf-5-some-pop 697 chr1 14780810 14780811 rs6429661 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,maf-5-all-pops 697 chr1 14781983 14781984 rs10492983 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 291.000000,4717.000000, 0.058107,0.941893, maf-5-some-pop,microattr-tpa 697 chr1 14782254 14782255 rs10927438 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2746.000000,2262.000000, 0.548323,0.451677, maf-5-some-pop,maf-5-all-pops 697 chr1 14782379 14782380 rs6682103 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2764.000000,2244.000000, 0.551917,0.448083, maf-5-some-pop,maf-5-all-pops 697 chr1 14782588 14782589 rs6690681 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2384.000000,2624.000000, 0.476038,0.523962, maf-5-some-pop,maf-5-all-pops 697 chr1 14782957 14782958 rs12567471 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 697 chr1 14783655 14783656 rs7530275 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2605.000000,2403.000000, 0.520168,0.479832, maf-5-some-pop,maf-5-all-pops,genotype-conflict 697 chr1 14786308 14786309 rs2486769 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2665.000000,2343.000000, 0.532149,0.467851, maf-5-some-pop,maf-5-all-pops 697 chr1 14787409 14787410 rs16850285 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop,genotype-conflict 697 chr1 14788117 14788118 rs10927439 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4520.000000,488.000000, 0.902556,0.097444, maf-5-some-pop,genotype-conflict 697 chr1 14790431 14790432 rs12119122 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop 697 chr1 14790630 14790631 rs4661496 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2642.000000,2366.000000, 0.527556,0.472444, maf-5-some-pop,maf-5-all-pops 697 chr1 14790841 14790842 rs10927440 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop 697 chr1 14790930 14790931 rs9429230 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 697 chr1 14792165 14792166 rs2480052 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 697 chr1 14792534 14792535 rs2480054 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2140.000000,2868.000000, 0.427316,0.572684, maf-5-some-pop,maf-5-all-pops,microattr-tpa 697 chr1 14795468 14795469 rs16850320 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop 697 chr1 14795783 14795784 rs1361396 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3397.000000,1611.000000,1611.000000,3397.000000, 0.339157,0.160843,0.160843,0.339157, maf-5-some-pop,maf-5-all-pops,genotype-conflict 697 chr1 14796431 14796432 rs2480057 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop 697 chr1 14796546 14796547 rs16850332 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 697 chr1 14799282 14799283 rs9429233 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4245.000000,763.000000, 0.847644,0.152356, maf-5-some-pop 697 chr1 14804873 14804874 rs7555566 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop,maf-5-all-pops 697 chr1 14805214 14805215 rs4369222 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop,maf-5-all-pops 697 chr1 14805992 14805993 rs11584308 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4249.000000,759.000000, 0.848442,0.151558, maf-5-some-pop 697 chr1 14807685 14807686 rs2486762 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 3323.000000,1685.000000,1685.000000,3323.000000, 0.331769,0.168231,0.168231,0.331769, maf-5-some-pop,maf-5-all-pops 697 chr1 14807835 14807836 rs12082114 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 697 chr1 14808755 14808756 rs2480061 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2074.000000,2934.000000, 0.414137,0.585863, maf-5-some-pop,maf-5-all-pops 697 chr1 14810261 14810262 rs2486761 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2220.000000,2788.000000,2788.000000,2220.000000, 0.221645,0.278355,0.278355,0.221645, maf-5-some-pop,maf-5-all-pops 698 chr1 14811780 14811781 rs2480063 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2257.000000,2751.000000, 0.450679,0.549321, maf-5-some-pop 698 chr1 14814758 14814759 rs10927442 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 698 chr1 14816877 14816878 rs12032621 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop 698 chr1 14819756 14819757 rs12129734 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4311.000000,697.000000, 0.860823,0.139177, maf-5-some-pop 698 chr1 14821609 14821610 rs12142754 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 698 chr1 14822385 14822386 rs12132708 0 + A A A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1195.000000,3813.000000, 0.238618,0.761382, maf-5-some-pop,maf-5-all-pops 698 chr1 14822915 14822916 rs16850384 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,genotype-conflict 698 chr1 14823189 14823190 rs16850389 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop,genotype-conflict 698 chr1 14825657 14825658 rs12136164 0 + C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop,genotype-conflict 698 chr1 14825695 14825696 rs12125185 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop 698 chr1 14826028 14826029 rs12733612 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1832.000000,3176.000000, 0.365815,0.634185, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14826608 14826609 rs12086025 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2560.000000,2448.000000, 0.511182,0.488818, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14827764 14827765 rs12035028 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 G,T, 4735.000000,273.000000, 0.945487,0.054513, maf-5-some-pop 698 chr1 14828081 14828082 rs10927446 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2505.000000,2503.000000, 0.500200,0.499800, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14831918 14831919 rs10754859 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3777.000000,1231.000000, 0.754193,0.245807, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14837705 14837706 rs16850413 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4357.000000,651.000000, 0.870008,0.129992, maf-5-some-pop 698 chr1 14837952 14837953 rs10927452 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop 698 chr1 14838730 14838731 rs10927453 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2149.000000,2859.000000, 0.429113,0.570887, maf-5-some-pop,maf-5-all-pops 698 chr1 14845458 14845459 rs12138326 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop 698 chr1 14849087 14849088 rs3892594 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3095.000000,1913.000000, 0.618011,0.381989, maf-5-some-pop,maf-5-all-pops 698 chr1 14849771 14849772 rs4279844 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 698 chr1 14849995 14849996 rs6673698 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 910.000000,4098.000000, 0.181709,0.818291, maf-5-some-pop 698 chr1 14852369 14852370 rs12759765 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2472.000000,2536.000000, 0.493610,0.506390, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14857642 14857643 rs2105239 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2931.000000,2077.000000, 0.585264,0.414736, maf-5-some-pop,maf-5-all-pops 698 chr1 14858675 14858676 rs10927458 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop 698 chr1 14859578 14859579 rs7540545 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2037.000000,2971.000000, 0.406749,0.593251, maf-5-some-pop,maf-5-all-pops 698 chr1 14859648 14859649 rs7540634 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop 698 chr1 14863560 14863561 rs1890784 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,C, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop 698 chr1 14870567 14870568 rs10927460 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3915.000000,1093.000000, 0.781749,0.218251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14875763 14875764 rs12025005 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2418.000000,2590.000000, 0.482827,0.517173, maf-5-some-pop,maf-5-all-pops 698 chr1 14876031 14876032 rs4385705 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2122.000000,2886.000000, 0.423722,0.576278, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14876594 14876595 rs4074527 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2511.000000,2497.000000,2497.000000,2511.000000, 0.250699,0.249301,0.249301,0.250699, maf-5-some-pop,maf-5-all-pops 698 chr1 14879490 14879491 rs11803051 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1741.000000,3267.000000, 0.347644,0.652356, maf-5-some-pop,maf-5-all-pops 698 chr1 14880824 14880825 rs10927462 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2328.000000,2680.000000, 0.464856,0.535144, maf-5-some-pop,maf-5-all-pops 698 chr1 14883843 14883844 rs17403250 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 937.000000,4071.000000, 0.187101,0.812899, maf-5-some-pop,maf-5-all-pops 698 chr1 14884297 14884298 rs12031919 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1644.000000,3364.000000, 0.328275,0.671725, maf-5-some-pop,maf-5-all-pops 698 chr1 14886099 14886100 rs869839 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 698 chr1 14899528 14899529 rs12096994 0 + C C A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 10 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 3 A,C,T, 227.000000,4775.000000,6.000000, 0.045327,0.953474,0.001198, maf-5-some-pop 698 chr1 14900353 14900354 rs6666337 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop 698 chr1 14900418 14900419 rs6703840 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 698 chr1 14901190 14901191 rs10927468 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3168.000000,1840.000000, 0.632588,0.367412, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14908072 14908073 rs2103694 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 526.000000,4482.000000,4482.000000,526.000000, 0.052516,0.447484,0.447484,0.052516, maf-5-some-pop,genotype-conflict 698 chr1 14908463 14908464 rs684975 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 476.000000,4532.000000,4532.000000,476.000000, 0.047524,0.452476,0.452476,0.047524, maf-5-some-pop,genotype-conflict 698 chr1 14908838 14908839 rs10803288 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 909.000000,4099.000000, 0.181510,0.818490, maf-5-some-pop 698 chr1 14910082 14910083 rs34982023 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop 698 chr1 14910919 14910920 rs6685406 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, maf-5-some-pop,maf-5-all-pops 698 chr1 14911004 14911005 rs809755 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4661.000000,347.000000,347.000000,4661.000000, 0.465355,0.034645,0.034645,0.465355, maf-5-some-pop 698 chr1 14915146 14915147 rs4661292 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3277.000000,1731.000000, 0.654353,0.345647, maf-5-some-pop,maf-5-all-pops,genotype-conflict 698 chr1 14917816 14917817 rs12145446 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,G, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop 698 chr1 14919084 14919085 rs1543362 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1149.000000,3859.000000,3859.000000,1149.000000, 0.114716,0.385284,0.385284,0.114716, maf-5-some-pop 698 chr1 14919894 14919895 rs664747 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2315.000000,2693.000000,2693.000000,2315.000000, 0.231130,0.268870,0.268870,0.231130, maf-5-some-pop,maf-5-all-pops 698 chr1 14920942 14920943 rs2486778 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1071.000000,3937.000000, 0.213858,0.786142, maf-5-some-pop 698 chr1 14927444 14927445 rs6676514 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,maf-5-all-pops 698 chr1 14929937 14929938 rs1737859 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1082.000000,3926.000000,3926.000000,1082.000000, 0.108027,0.391973,0.391973,0.108027, maf-5-some-pop,maf-5-all-pops 698 chr1 14934219 14934220 rs10803289 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 698 chr1 14934287 14934288 rs2473626 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1526.000000,3482.000000,3482.000000,1526.000000, 0.152356,0.347644,0.347644,0.152356, maf-5-some-pop,maf-5-all-pops 698 chr1 14934648 14934649 rs1997785 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 698 chr1 14941193 14941194 rs6668635 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1722.000000,3286.000000, 0.343850,0.656150, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 14944190 14944191 rs11578959 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 4090.000000,918.000000, 0.816693,0.183307, maf-5-some-pop 699 chr1 14944810 14944811 rs7553790 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop,maf-5-all-pops 699 chr1 14945040 14945041 rs7542378 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1802.000000,3206.000000, 0.359824,0.640176, maf-5-some-pop,maf-5-all-pops 699 chr1 14947919 14947920 rs11579756 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1931.000000,3077.000000, 0.385583,0.614417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 14951018 14951019 rs12085709 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 699 chr1 14955061 14955062 rs16850617 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,genotype-conflict 699 chr1 14960172 14960173 rs10927473 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 1903.000000,3105.000000, 0.379992,0.620008, maf-5-some-pop,maf-5-all-pops 699 chr1 14960684 14960685 rs12758763 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1933.000000,3075.000000, 0.385982,0.614018, maf-5-some-pop,maf-5-all-pops 699 chr1 14961082 14961083 rs16850635 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1576.000000,3432.000000, 0.314696,0.685304, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 14961660 14961661 rs6690379 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3807.000000,1201.000000, 0.760184,0.239816, maf-5-some-pop 699 chr1 14963295 14963296 rs16850640 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 699 chr1 14964468 14964469 rs12078810 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop 699 chr1 14966152 14966153 rs16850651 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 699 chr1 14966379 14966380 rs2294886 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2088.000000,2920.000000,2920.000000,2088.000000, 0.208466,0.291534,0.291534,0.208466, maf-5-some-pop,maf-5-all-pops 699 chr1 14966421 14966422 rs2294885 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 699 chr1 14967313 14967314 rs10803292 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop,maf-5-all-pops 699 chr1 14980999 14981000 rs7530236 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 699 chr1 14981239 14981240 rs7530538 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3013.000000,1995.000000, 0.601637,0.398363, maf-5-some-pop,maf-5-all-pops 699 chr1 14982116 14982117 rs7541391 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4410.000000,598.000000, 0.880591,0.119409, maf-5-some-pop 699 chr1 14982824 14982825 rs10927483 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 699 chr1 14984654 14984655 rs6429671 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 309.000000,4699.000000, 0.061701,0.938299, maf-5-some-pop 699 chr1 14990370 14990371 rs2310877 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3937.000000,1071.000000, 0.786142,0.213858, maf-5-some-pop,maf-5-all-pops 699 chr1 14999189 14999190 rs4661295 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3149.000000,1859.000000, 0.628794,0.371206, maf-5-some-pop,maf-5-all-pops 699 chr1 15001730 15001731 rs10803296 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop,maf-5-all-pops 699 chr1 15002812 15002813 rs12037545 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3100.000000,1908.000000, 0.619010,0.380990, maf-5-some-pop,maf-5-all-pops 699 chr1 15010446 15010447 rs4661513 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2493.000000,2515.000000, 0.497804,0.502196, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 15014788 15014789 rs10927503 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,genotype-conflict 699 chr1 15017014 15017015 rs10927504 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop,maf-5-all-pops 699 chr1 15024463 15024464 rs16850736 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 4684.000000,324.000000, 0.935304,0.064696, maf-5-some-pop,maf-5-all-pops 699 chr1 15028345 15028346 rs6689804 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2030.000000,2978.000000, 0.405351,0.594649, maf-5-some-pop,maf-5-all-pops 699 chr1 15031314 15031315 rs10803303 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3581.000000,1427.000000, 0.715056,0.284944, maf-5-some-pop,maf-5-all-pops 699 chr1 15031897 15031898 rs10927510 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1547.000000,3461.000000, 0.308906,0.691094, maf-5-some-pop,maf-5-all-pops 699 chr1 15032339 15032340 rs7534010 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops 699 chr1 15038770 15038771 rs4661300 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3546.000000,1462.000000, 0.708067,0.291933, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 15038790 15038791 rs4661515 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1392.000000,3616.000000, 0.277955,0.722045, maf-5-some-pop,maf-5-all-pops 699 chr1 15039410 15039411 rs7516095 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3603.000000,1405.000000, 0.719449,0.280551, maf-5-some-pop 699 chr1 15039672 15039673 rs12136961 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1770.000000,3238.000000, 0.353435,0.646565, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 15042746 15042747 rs6663124 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2093.000000,2915.000000, 0.417931,0.582069, maf-5-some-pop,maf-5-all-pops 699 chr1 15042874 15042875 rs6704445 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 699 chr1 15044795 15044796 rs1883576 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3568.000000,1440.000000,1440.000000,3568.000000, 0.356230,0.143770,0.143770,0.356230, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 15044947 15044948 rs6662845 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 699 chr1 15045764 15045765 rs6688730 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3118.000000,1890.000000, 0.622604,0.377396, maf-5-some-pop,maf-5-all-pops 699 chr1 15047170 15047171 rs10754867 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3342.000000,1666.000000, 0.667332,0.332668, maf-5-some-pop,maf-5-all-pops 699 chr1 15048048 15048049 rs12140709 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2202.000000,2806.000000, 0.439696,0.560304, maf-5-some-pop,maf-5-all-pops 699 chr1 15048870 15048871 rs12045403 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3854.000000,1154.000000, 0.769569,0.230431, maf-5-some-pop,maf-5-all-pops 699 chr1 15049952 15049953 rs6656371 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop 699 chr1 15050523 15050524 rs4661517 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3759.000000,1249.000000, 0.750599,0.249401, maf-5-some-pop,maf-5-all-pops 699 chr1 15053089 15053090 rs16850791 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop,genotype-conflict 699 chr1 15055981 15055982 rs7528350 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 699 chr1 15056095 15056096 rs6658908 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3595.000000,1413.000000, 0.717851,0.282149, maf-5-some-pop 699 chr1 15056291 15056292 rs2050125 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1239.000000,3769.000000,3769.000000,1239.000000, 0.123702,0.376298,0.376298,0.123702, maf-5-some-pop 699 chr1 15062625 15062626 rs2871738 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3479.000000,1529.000000, 0.694688,0.305312, maf-5-some-pop,maf-5-all-pops 699 chr1 15066943 15066944 rs10803311 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2008.000000,3000.000000, 0.400958,0.599042, maf-5-some-pop,maf-5-all-pops,genotype-conflict 699 chr1 15068996 15068997 rs6660333 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1050.000000,3958.000000, 0.209665,0.790335, maf-5-some-pop,maf-5-all-pops 699 chr1 15071734 15071735 rs3795755 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop 699 chr1 15072278 15072279 rs12132834 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 699 chr1 15072613 15072614 rs6429674 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1860.000000,3148.000000, 0.371406,0.628594, maf-5-some-pop,genotype-conflict 700 chr1 15075766 15075767 rs6429677 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1809.000000,3199.000000, 0.361222,0.638778, maf-5-some-pop,maf-5-all-pops 700 chr1 15076304 15076305 rs10927530 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop,genotype-conflict 700 chr1 15076482 15076483 rs6704226 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3515.000000,1493.000000, 0.701877,0.298123, maf-5-some-pop,maf-5-all-pops 700 chr1 15077451 15077452 rs12069127 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop 700 chr1 15081182 15081183 rs6683649 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2215.000000,2793.000000, 0.442292,0.557708, maf-5-some-pop,genotype-conflict 700 chr1 15082124 15082125 rs6678566 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1764.000000,3244.000000, 0.352236,0.647764, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15083514 15083515 rs742467 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2652.000000,2356.000000,2356.000000,2652.000000, 0.264776,0.235224,0.235224,0.264776, maf-5-some-pop,maf-5-all-pops 700 chr1 15085145 15085146 rs10803315 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2850.000000,2158.000000, 0.569089,0.430911, maf-5-some-pop,maf-5-all-pops 700 chr1 15085774 15085775 rs10927533 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop 700 chr1 15086012 15086013 rs6673847 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2376.000000,2632.000000, 0.474441,0.525559, maf-5-some-pop,maf-5-all-pops 700 chr1 15089766 15089767 rs4543785 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3323.000000,1685.000000, 0.663538,0.336462, maf-5-some-pop,maf-5-all-pops 700 chr1 15092812 15092813 rs4661302 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4136.000000,872.000000, 0.825879,0.174121, maf-5-some-pop,maf-5-all-pops 700 chr1 15096221 15096222 rs12141316 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop,genotype-conflict 700 chr1 15099721 15099722 rs4661524 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop 700 chr1 15100800 15100801 rs4661525 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3428.000000,1580.000000, 0.684505,0.315495, maf-5-some-pop,maf-5-all-pops 700 chr1 15100938 15100939 rs4661526 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15101343 15101344 rs12088443 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 700 chr1 15101471 15101472 rs4661303 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4486.000000,522.000000, 0.895767,0.104233, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15103037 15103038 rs16850836 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15106056 15106057 rs1473680 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4898.000000,110.000000,110.000000,4898.000000, 0.489018,0.010982,0.010982,0.489018, maf-5-some-pop 700 chr1 15107522 15107523 rs1810475 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2347.000000,2661.000000,2661.000000,2347.000000, 0.234325,0.265675,0.265675,0.234325, maf-5-some-pop,maf-5-all-pops 700 chr1 15113843 15113844 rs1737360 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3408.000000,1600.000000,1600.000000,3408.000000, 0.340256,0.159744,0.159744,0.340256, maf-5-some-pop,maf-5-all-pops 700 chr1 15114295 15114296 rs1630120 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2781.000000,2227.000000,2227.000000,2781.000000, 0.277656,0.222344,0.222344,0.277656, maf-5-some-pop,maf-5-all-pops 700 chr1 15115509 15115510 rs1721831 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 239.000000,4769.000000,4769.000000,239.000000, 0.023862,0.476138,0.476138,0.023862, maf-5-some-pop,genotype-conflict 700 chr1 15119707 15119708 rs6693267 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 700 chr1 15120525 15120526 rs1737352 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2609.000000,2399.000000,2399.000000,2609.000000, 0.260483,0.239517,0.239517,0.260483, maf-5-some-pop 700 chr1 15123099 15123100 rs7525851 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1144.000000,3864.000000, 0.228435,0.771565, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15124317 15124318 rs1737349 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3072.000000,1936.000000,1936.000000,3072.000000, 0.306709,0.193291,0.193291,0.306709, maf-5-some-pop,maf-5-all-pops 700 chr1 15124696 15124697 rs2014618 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 644.000000,4364.000000,4364.000000,644.000000, 0.064297,0.435703,0.435703,0.064297, maf-5-some-pop,genotype-conflict 700 chr1 15125842 15125843 rs3845589 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 4800.000000,208.000000,208.000000,4800.000000, 0.479233,0.020767,0.020767,0.479233, maf-5-some-pop 700 chr1 15126213 15126214 rs3930209 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1488.000000,3520.000000,3520.000000,1488.000000, 0.148562,0.351438,0.351438,0.148562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15127742 15127743 rs12563293 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15133667 15133668 rs804136 0 + C C A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15135252 15135253 rs10927556 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3190.000000,1818.000000, 0.636981,0.363019, maf-5-some-pop,maf-5-all-pops 700 chr1 15135527 15135528 rs6671110 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop 700 chr1 15136507 15136508 rs3916544 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3883.000000,1125.000000, 0.775359,0.224641, maf-5-some-pop 700 chr1 15140361 15140362 rs10489353 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1012.000000,3996.000000, 0.202077,0.797923, maf-5-some-pop 700 chr1 15140423 15140424 rs10733137 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,G, 2846.000000,2162.000000, 0.568291,0.431709, maf-5-some-pop,maf-5-all-pops 700 chr1 15141975 15141976 rs16850884 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop 700 chr1 15141986 15141987 rs6694657 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15142299 15142300 rs6658818 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3933.000000,1075.000000, 0.785343,0.214657, maf-5-some-pop,genotype-conflict 700 chr1 15144982 15144983 rs2311336 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2634.000000,2374.000000, 0.525958,0.474042, maf-5-some-pop,maf-5-all-pops 700 chr1 15145165 15145166 rs3888127 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3859.000000,1149.000000,1149.000000,3859.000000, 0.385284,0.114716,0.114716,0.385284, maf-5-some-pop,genotype-conflict 700 chr1 15148926 15148927 rs16850908 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop 700 chr1 15149170 15149171 rs6675636 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1183.000000,3825.000000, 0.236222,0.763778, maf-5-some-pop,genotype-conflict 700 chr1 15152754 15152755 rs12127407 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop 700 chr1 15153368 15153369 rs17368807 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop 700 chr1 15153655 15153656 rs705579 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 505.000000,4503.000000,4503.000000,505.000000, 0.050419,0.449581,0.449581,0.050419, maf-5-some-pop,genotype-conflict 700 chr1 15154629 15154630 rs12134149 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3784.000000,1224.000000, 0.755591,0.244409, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15154824 15154825 rs12123938 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1289.000000,3719.000000, 0.257388,0.742612, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15156735 15156736 rs2103117 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 485.000000,4523.000000,4523.000000,485.000000, 0.048423,0.451577,0.451577,0.048423, maf-5-some-pop,genotype-conflict 700 chr1 15157519 15157520 rs2005997 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 119.000000,4889.000000,4889.000000,119.000000, 0.011881,0.488119,0.488119,0.011881, maf-5-some-pop 700 chr1 15183209 15183210 rs16850971 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop,maf-5-all-pops 700 chr1 15188018 15188019 rs10803320 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3103.000000,1905.000000, 0.619609,0.380391, maf-5-some-pop,genotype-conflict 700 chr1 15189087 15189088 rs4661533 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2225.000000,2783.000000, 0.444289,0.555711, maf-5-some-pop,genotype-conflict 700 chr1 15189298 15189299 rs3845596 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2887.000000,2121.000000,2121.000000,2887.000000, 0.288239,0.211761,0.211761,0.288239, maf-5-some-pop,maf-5-all-pops 700 chr1 15189692 15189693 rs3845598 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1085.000000,3923.000000,3923.000000,1085.000000, 0.108327,0.391673,0.391673,0.108327, maf-5-some-pop,genotype-conflict 700 chr1 15190418 15190419 rs3765379 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1237.000000,3771.000000,3771.000000,1237.000000, 0.123502,0.376498,0.376498,0.123502, maf-5-some-pop,maf-5-all-pops,genotype-conflict 700 chr1 15192739 15192740 rs2807568 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3465.000000,1543.000000, 0.691893,0.308107, maf-5-some-pop,genotype-conflict 700 chr1 15192797 15192798 rs2690016 0 + A A A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1446.000000,3562.000000, 0.288738,0.711262, maf-5-some-pop 700 chr1 15192915 15192916 rs4661539 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,genotype-conflict 700 chr1 15193854 15193855 rs2690018 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1484.000000,3524.000000, 0.296326,0.703674, maf-5-some-pop,genotype-conflict 700 chr1 15195443 15195444 rs2807552 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3833.000000,1175.000000, 0.765375,0.234625, maf-5-some-pop 700 chr1 15197813 15197814 rs12564579 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3149.000000,1859.000000, 0.628794,0.371206, maf-5-some-pop,maf-5-all-pops 700 chr1 15202203 15202204 rs4661540 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3381.000000,1627.000000, 0.675120,0.324880, maf-5-some-pop,maf-5-all-pops 700 chr1 15202728 15202729 rs2803394 0 - T T A/G genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3283.000000,1725.000000,1725.000000,3283.000000, 0.327776,0.172224,0.172224,0.327776, maf-5-some-pop,maf-5-all-pops,genotype-conflict 701 chr1 15207010 15207011 rs11578834 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,T, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 701 chr1 15207502 15207503 rs16851000 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 701 chr1 15207951 15207952 rs2690022 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3977.000000,1031.000000, 0.794129,0.205871, maf-5-some-pop 701 chr1 15208211 15208212 rs2801178 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3388.000000,1620.000000, 0.676518,0.323482, maf-5-some-pop,maf-5-all-pops 701 chr1 15208305 15208306 rs41491744 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 102.000000,4906.000000, 0.020367,0.979633, 701 chr1 15208881 15208882 rs2049374 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2309.000000,2699.000000, 0.461062,0.538938, maf-5-some-pop,maf-5-all-pops 701 chr1 15213684 15213685 rs4661542 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,G, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 701 chr1 15224743 15224744 rs2801175 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 701 chr1 15225707 15225708 rs34053474 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 701 chr1 15226054 15226055 rs2807555 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop 701 chr1 15234028 15234029 rs2807562 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop 701 chr1 15234556 15234557 rs10449293 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1474.000000,3534.000000, 0.294329,0.705671, maf-5-some-pop,maf-5-all-pops 701 chr1 15237861 15237862 rs2807563 0 + A A A/C genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop 701 chr1 15238054 15238055 rs2690026 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2932.000000,2076.000000, 0.585463,0.414537, maf-5-some-pop,maf-5-all-pops 701 chr1 15238753 15238754 rs2801179 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 A,C, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 701 chr1 15240916 15240917 rs2690028 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1670.000000,3338.000000, 0.333466,0.666534, maf-5-some-pop,maf-5-all-pops 701 chr1 15245529 15245530 rs2490570 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3822.000000,1186.000000, 0.763179,0.236821, maf-5-some-pop,maf-5-all-pops 701 chr1 15253589 15253590 rs10927578 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop,maf-5-all-pops 701 chr1 15253723 15253724 rs10927580 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2968.000000,2040.000000, 0.592652,0.407348, maf-5-some-pop,maf-5-all-pops,genotype-conflict 701 chr1 15256120 15256121 rs7512398 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4068.000000,940.000000, 0.812300,0.187700, maf-5-some-pop,maf-5-all-pops 701 chr1 15256902 15256903 rs12141312 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2232.000000,2776.000000, 0.445687,0.554313, maf-5-some-pop,maf-5-all-pops 701 chr1 15257474 15257475 rs12567946 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop,genotype-conflict 701 chr1 15259396 15259397 rs12569359 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 763.000000,4245.000000, 0.152356,0.847644, maf-5-some-pop,maf-5-all-pops 701 chr1 15265403 15265404 rs6693394 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2951.000000,2057.000000, 0.589257,0.410743, maf-5-some-pop,genotype-conflict 701 chr1 15266212 15266213 rs940393 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop,genotype-conflict 701 chr1 15268362 15268363 rs12743836 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4513.000000,495.000000, 0.901158,0.098842, maf-5-some-pop 701 chr1 15268654 15268655 rs10754873 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop,maf-5-all-pops 701 chr1 15272744 15272745 rs10803326 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1814.000000,3194.000000, 0.362220,0.637780, maf-5-some-pop 701 chr1 15273096 15273097 rs7546786 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1640.000000,3368.000000, 0.327476,0.672524, maf-5-some-pop 701 chr1 15273114 15273115 rs6429695 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3003.000000,2005.000000, 0.599641,0.400359, maf-5-some-pop,genotype-conflict 701 chr1 15273180 15273181 rs6694029 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop,maf-5-all-pops 701 chr1 15273951 15273952 rs938253 0 - T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 701 chr1 15276483 15276484 rs12035178 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop,genotype-conflict 701 chr1 15276525 15276526 rs16851049 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,genotype-conflict 701 chr1 15277341 15277342 rs12563750 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop 701 chr1 15277709 15277710 rs4661548 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,maf-5-all-pops 701 chr1 15279195 15279196 rs7528855 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 701 chr1 15281665 15281666 rs12069438 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 701 chr1 15286095 15286096 rs12068752 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 4053.000000,955.000000, 0.809305,0.190695, maf-5-some-pop 701 chr1 15286571 15286572 rs16851068 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 701 chr1 15286804 15286805 rs6429696 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1971.000000,3037.000000, 0.393570,0.606430, maf-5-some-pop 701 chr1 15287125 15287126 rs11808058 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop 701 chr1 15288217 15288218 rs6663699 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3685.000000,1323.000000, 0.735823,0.264177, maf-5-some-pop,maf-5-all-pops,genotype-conflict 701 chr1 15289209 15289210 rs4421580 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,maf-5-all-pops 701 chr1 15289375 15289376 rs1398823 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop,maf-5-all-pops 701 chr1 15295332 15295333 rs10927602 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2192.000000,2816.000000, 0.437700,0.562300, maf-5-some-pop,maf-5-all-pops 701 chr1 15297248 15297249 rs7544674 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 701 chr1 15299671 15299672 rs2175773 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2835.000000,2173.000000, 0.566094,0.433906, maf-5-some-pop,genotype-conflict 701 chr1 15301947 15301948 rs1567798 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2946.000000,2062.000000, 0.588259,0.411741, maf-5-some-pop,maf-5-all-pops,genotype-conflict 701 chr1 15304601 15304602 rs6429698 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop,maf-5-all-pops 701 chr1 15304858 15304859 rs4661553 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop,genotype-conflict 701 chr1 15306050 15306051 rs7518989 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop,maf-5-all-pops 701 chr1 15307477 15307478 rs7522712 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1438.000000,3570.000000, 0.287141,0.712859, maf-5-some-pop,maf-5-all-pops 701 chr1 15308797 15308798 rs10927613 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3564.000000,1444.000000, 0.711661,0.288339, maf-5-some-pop,maf-5-all-pops,genotype-conflict 701 chr1 15309860 15309861 rs4080918 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,maf-5-all-pops 701 chr1 15309900 15309901 rs11589152 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop 701 chr1 15313261 15313262 rs10927616 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3357.000000,1651.000000, 0.670327,0.329673, maf-5-some-pop 701 chr1 15314119 15314120 rs12754000 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3256.000000,1752.000000, 0.650160,0.349840, maf-5-some-pop,maf-5-all-pops 701 chr1 15314310 15314311 rs12567150 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3256.000000,1752.000000, 0.650160,0.349840, maf-5-some-pop,maf-5-all-pops 701 chr1 15316646 15316647 rs10927617 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1732.000000,3276.000000, 0.345847,0.654153, maf-5-some-pop,maf-5-all-pops 701 chr1 15318398 15318399 rs1965402 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3414.000000,1594.000000, 0.681709,0.318291, maf-5-some-pop,genotype-conflict 701 chr1 15320448 15320449 rs4661310 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3871.000000,1137.000000, 0.772963,0.227037, maf-5-some-pop,maf-5-all-pops 701 chr1 15320460 15320461 rs16849136 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 3 A,G,T, 393.000000,4613.000000,2.000000, 0.078474,0.921126,0.000399, maf-5-some-pop 701 chr1 15323415 15323416 rs1316257 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1837.000000,3171.000000,3171.000000,1837.000000, 0.183407,0.316593,0.316593,0.183407, maf-5-some-pop,maf-5-all-pops 701 chr1 15329986 15329987 rs10754876 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2784.000000,2224.000000, 0.555911,0.444089, maf-5-some-pop,maf-5-all-pops,genotype-conflict 701 chr1 15330299 15330300 rs10803338 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4070.000000,938.000000, 0.812700,0.187300, maf-5-some-pop 701 chr1 15330480 15330481 rs6682548 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3848.000000,1160.000000, 0.768371,0.231629, maf-5-some-pop,maf-5-all-pops 701 chr1 15331285 15331286 rs12048071 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3770.000000,1238.000000, 0.752796,0.247204, maf-5-some-pop,maf-5-all-pops 701 chr1 15331602 15331603 rs7539545 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2124.000000,2884.000000, 0.424121,0.575879, maf-5-some-pop,maf-5-all-pops 701 chr1 15332889 15332890 rs12045446 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop 701 chr1 15333052 15333053 rs4633284 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3862.000000,1146.000000, 0.771166,0.228834, maf-5-some-pop 701 chr1 15333747 15333748 rs6429700 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4527.000000,481.000000, 0.903954,0.096046, maf-5-some-pop 702 chr1 15335858 15335859 rs6429701 0 + A A A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 493.000000,4515.000000, 0.098442,0.901558, maf-5-some-pop 702 chr1 15336521 15336522 rs938249 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3103.000000,1905.000000, 0.619609,0.380391, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15339959 15339960 rs6429703 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops,microattr-tpa 702 chr1 15340866 15340867 rs6663935 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop 702 chr1 15341412 15341413 rs4661563 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,genotype-conflict 702 chr1 15342570 15342571 rs10803339 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 702 chr1 15343093 15343094 rs10157110 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15344402 15344403 rs869712 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2137.000000,2871.000000, 0.426717,0.573283, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15346329 15346330 rs10927631 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,maf-5-all-pops 702 chr1 15346890 15346891 rs6657768 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1480.000000,3528.000000, 0.295527,0.704473, maf-5-some-pop,maf-5-all-pops 702 chr1 15347362 15347363 rs10927632 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2282.000000,2726.000000, 0.455671,0.544329, maf-5-some-pop,maf-5-all-pops 702 chr1 15351282 15351283 rs17413451 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop,maf-5-all-pops 702 chr1 15352819 15352820 rs6684496 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2580.000000,2428.000000, 0.515176,0.484824, maf-5-some-pop,maf-5-all-pops 702 chr1 15352957 15352958 rs6693853 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2432.000000,2576.000000, 0.485623,0.514377, maf-5-some-pop,maf-5-all-pops 702 chr1 15354295 15354296 rs16851160 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,genotype-conflict 702 chr1 15354398 15354399 rs11803332 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1712.000000,3296.000000, 0.341853,0.658147, maf-5-some-pop,maf-5-all-pops 702 chr1 15354996 15354997 rs12081961 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3790.000000,1218.000000, 0.756789,0.243211, maf-5-some-pop,maf-5-all-pops 702 chr1 15355240 15355241 rs6665012 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2405.000000,2603.000000, 0.480232,0.519768, maf-5-some-pop,maf-5-all-pops 702 chr1 15356028 15356029 rs16851164 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 702 chr1 15356564 15356565 rs10927634 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 538.000000,4470.000000, 0.107428,0.892572, maf-5-some-pop,genotype-conflict 702 chr1 15357504 15357505 rs2175771 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop,genotype-conflict 702 chr1 15359621 15359622 rs2311859 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1203.000000,3805.000000, 0.240216,0.759784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15359966 15359967 rs4520412 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15360720 15360721 rs938255 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop 702 chr1 15362355 15362356 rs16851168 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,genotype-conflict 702 chr1 15366689 15366690 rs4661314 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1570.000000,3438.000000, 0.313498,0.686502, maf-5-some-pop,maf-5-all-pops 702 chr1 15373037 15373038 rs10754879 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2012.000000,2996.000000, 0.401757,0.598243, maf-5-some-pop,maf-5-all-pops 702 chr1 15376090 15376091 rs10803341 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15377553 15377554 rs12138732 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop 702 chr1 15377686 15377687 rs761288 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2725.000000,2283.000000,2283.000000,2725.000000, 0.272065,0.227935,0.227935,0.272065, maf-5-some-pop,maf-5-all-pops 702 chr1 15379184 15379185 rs1513548 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4905.000000,103.000000,103.000000,4905.000000, 0.489716,0.010284,0.010284,0.489716, maf-5-some-pop 702 chr1 15393294 15393295 rs10803343 0 + G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 646.000000,4362.000000, 0.128994,0.871006, maf-5-some-pop,genotype-conflict 702 chr1 15398239 15398240 rs16851219 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3957.000000,1051.000000, 0.790136,0.209864, maf-5-some-pop 702 chr1 15399945 15399946 rs17371917 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop,genotype-conflict 702 chr1 15401157 15401158 rs16851241 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop,maf-5-all-pops 702 chr1 15405088 15405089 rs10489454 0 - C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 702 chr1 15405488 15405489 rs1000313 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2654.000000,2354.000000, 0.529952,0.470048, maf-5-some-pop,genotype-conflict 702 chr1 15405906 15405907 rs1000314 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2803.000000,2205.000000, 0.559704,0.440296, maf-5-some-pop,maf-5-all-pops 702 chr1 15406695 15406696 rs2175774 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1734.000000,3274.000000,3274.000000,1734.000000, 0.173123,0.326877,0.326877,0.173123, maf-5-some-pop,maf-5-all-pops 702 chr1 15407259 15407260 rs16851263 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 1077.000000,3931.000000, 0.215056,0.784944, maf-5-some-pop,maf-5-all-pops 702 chr1 15409155 15409156 rs4501834 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop,maf-5-all-pops 702 chr1 15412268 15412269 rs10803349 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2426.000000,2582.000000, 0.484425,0.515575, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15413354 15413355 rs2221926 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1873.000000,3135.000000,3135.000000,1873.000000, 0.187001,0.312999,0.312999,0.187001, maf-5-some-pop,maf-5-all-pops 702 chr1 15414412 15414413 rs4661575 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2380.000000,2628.000000, 0.475240,0.524760, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15424440 15424441 rs41496250 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 702 chr1 15428357 15428358 rs477953 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 280.000000,4728.000000,4728.000000,280.000000, 0.027955,0.472045,0.472045,0.027955, maf-5-some-pop 702 chr1 15428507 15428508 rs476859 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2288.000000,2720.000000,2720.000000,2288.000000, 0.228435,0.271565,0.271565,0.228435, maf-5-some-pop,maf-5-all-pops 702 chr1 15430227 15430228 rs529587 0 - G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 702 chr1 15430932 15430933 rs523125 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3423.000000,1585.000000,1585.000000,3423.000000, 0.341753,0.158247,0.158247,0.341753, maf-5-some-pop,maf-5-all-pops 702 chr1 15431656 15431657 rs494983 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2863.000000,2145.000000,2145.000000,2863.000000, 0.285843,0.214157,0.214157,0.285843, maf-5-some-pop,maf-5-all-pops 702 chr1 15435256 15435257 rs496567 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3621.000000,1387.000000,1387.000000,3621.000000, 0.361522,0.138478,0.138478,0.361522, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15438989 15438990 rs10803354 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 27 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2214.000000,2794.000000, 0.442093,0.557907, maf-5-some-pop,maf-5-all-pops,genotype-conflict 702 chr1 15447497 15447498 rs1546906 0 - A A C/T genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 119.000000,4889.000000,4889.000000,119.000000, 0.011881,0.488119,0.488119,0.011881, maf-5-some-pop 702 chr1 15447593 15447594 rs11812087 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP, 2 C,G, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop 702 chr1 15448759 15448760 rs733677 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1071.000000,3937.000000,3937.000000,1071.000000, 0.106929,0.393071,0.393071,0.106929, maf-5-some-pop,genotype-conflict 702 chr1 15455191 15455192 rs10803355 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3536.000000,1472.000000, 0.706070,0.293930, maf-5-some-pop,maf-5-all-pops 702 chr1 15455422 15455423 rs4661578 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3176.000000,1832.000000, 0.634185,0.365815, maf-5-some-pop,maf-5-all-pops 702 chr1 15456015 15456016 rs7524358 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 665.000000,4343.000000, 0.132788,0.867212, maf-5-some-pop 702 chr1 15456819 15456820 rs12025185 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 702 chr1 15464436 15464437 rs10927684 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,genotype-conflict 702 chr1 15465486 15465487 rs4661579 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,genotype-conflict 703 chr1 15469481 15469482 rs9660093 0 + G G A/G genomic single unknown 0 0 intron exact 1 MixedObserved 7 1000GENOMES,AFFY,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 912.000000,4096.000000, 0.182109,0.817891, maf-5-some-pop 703 chr1 15471172 15471173 rs10754883 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop 703 chr1 15471991 15471992 rs761301 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3004.000000,2004.000000,2004.000000,3004.000000, 0.299920,0.200080,0.200080,0.299920, maf-5-some-pop 703 chr1 15474915 15474916 rs9659498 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop 703 chr1 15476945 15476946 rs7543456 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1347.000000,3661.000000, 0.268970,0.731030, maf-5-some-pop,maf-5-all-pops 703 chr1 15477657 15477658 rs7555700 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3130.000000,1878.000000, 0.625000,0.375000, maf-5-some-pop,maf-5-all-pops 703 chr1 15478065 15478066 rs1883759 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1131.000000,3877.000000,3877.000000,1131.000000, 0.112919,0.387081,0.387081,0.112919, maf-5-some-pop 703 chr1 15482053 15482054 rs4661581 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop,genotype-conflict 703 chr1 15484464 15484465 rs10927689 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop 703 chr1 15485313 15485314 rs6429718 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop,maf-5-all-pops 703 chr1 15489637 15489638 rs10927690 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1399.000000,3609.000000, 0.279353,0.720647, maf-5-some-pop,maf-5-all-pops 703 chr1 15493909 15493910 rs6687242 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4185.000000,823.000000, 0.835663,0.164337, maf-5-some-pop 703 chr1 15495904 15495905 rs7539166 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,genotype-conflict 703 chr1 15500331 15500332 rs16851358 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4217.000000,791.000000, 0.842053,0.157947, maf-5-some-pop 703 chr1 15502480 15502481 rs10754886 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1260.000000,3748.000000, 0.251597,0.748403, maf-5-some-pop,genotype-conflict 703 chr1 15502538 15502539 rs10754887 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop 703 chr1 15503650 15503651 rs1883758 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3735.000000,1273.000000,1273.000000,3735.000000, 0.372903,0.127097,0.127097,0.372903, maf-5-some-pop 703 chr1 15504402 15504403 rs10927698 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1861.000000,3147.000000, 0.371605,0.628395, maf-5-some-pop,maf-5-all-pops,genotype-conflict 703 chr1 15504430 15504431 rs12039330 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop 703 chr1 15507196 15507197 rs12145963 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3826.000000,1182.000000, 0.763978,0.236022, maf-5-some-pop,genotype-conflict 703 chr1 15507319 15507320 rs12135755 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1183.000000,3825.000000, 0.236222,0.763778, maf-5-some-pop,genotype-conflict 703 chr1 15507951 15507952 rs4661594 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2704.000000,2304.000000, 0.539936,0.460064, maf-5-some-pop,maf-5-all-pops 703 chr1 15512130 15512131 rs11589870 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2789.000000,2219.000000, 0.556909,0.443091, maf-5-some-pop,maf-5-all-pops 703 chr1 15512177 15512178 rs11588245 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 703 chr1 15512221 15512222 rs11588628 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2787.000000,2221.000000, 0.556510,0.443490, maf-5-some-pop,maf-5-all-pops,genotype-conflict 703 chr1 15512339 15512340 rs4661596 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2791.000000,2217.000000, 0.557308,0.442692, maf-5-some-pop,maf-5-all-pops 703 chr1 15512756 15512757 rs761296 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2223.000000,2785.000000,2785.000000,2223.000000, 0.221945,0.278055,0.278055,0.221945, maf-5-some-pop,maf-5-all-pops 703 chr1 15514083 15514084 rs11808042 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 2221.000000,2787.000000, 0.443490,0.556510, maf-5-some-pop,maf-5-all-pops 703 chr1 15516298 15516299 rs10927709 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3438.000000,1570.000000, 0.686502,0.313498, maf-5-some-pop,genotype-conflict 703 chr1 15516751 15516752 rs6670249 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3439.000000,1569.000000, 0.686701,0.313299, maf-5-some-pop 703 chr1 15519681 15519682 rs742668 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4150.000000,858.000000,858.000000,4150.000000, 0.414337,0.085663,0.085663,0.414337, maf-5-some-pop 703 chr1 15522149 15522150 rs17382471 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 430.000000,4578.000000, 0.085863,0.914137, maf-5-some-pop,genotype-conflict 703 chr1 15522586 15522587 rs1883756 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1038.000000,3970.000000,3970.000000,1038.000000, 0.103634,0.396366,0.396366,0.103634, maf-5-some-pop 703 chr1 15522695 15522696 rs16851396 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4486.000000,522.000000, 0.895767,0.104233, maf-5-some-pop 703 chr1 15524848 15524849 rs4661598 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3531.000000,1477.000000, 0.705072,0.294928, maf-5-some-pop 703 chr1 15527322 15527323 rs4661326 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 407.000000,4601.000000, 0.081270,0.918730, maf-5-some-pop 703 chr1 15528333 15528334 rs4369223 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2216.000000,2792.000000, 0.442492,0.557508, maf-5-some-pop 703 chr1 15528486 15528487 rs2050233 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3947.000000,1061.000000,1061.000000,3947.000000, 0.394069,0.105931,0.105931,0.394069, maf-5-some-pop,genotype-conflict 703 chr1 15528666 15528667 rs17382617 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,genotype-conflict 703 chr1 15530259 15530260 rs7536482 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3521.000000,1487.000000, 0.703075,0.296925, maf-5-some-pop,genotype-conflict 703 chr1 15530328 15530329 rs10927718 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,genotype-conflict 703 chr1 15539258 15539259 rs12025158 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1485.000000,3523.000000, 0.296526,0.703474, maf-5-some-pop,maf-5-all-pops 703 chr1 15541072 15541073 rs7551863 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 626.000000,4382.000000, 0.125000,0.875000, maf-5-some-pop 703 chr1 15542072 15542073 rs3820064 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 807.000000,4201.000000,4201.000000,807.000000, 0.080571,0.419429,0.419429,0.080571, maf-5-some-pop,genotype-conflict 703 chr1 15542096 15542097 rs3820063 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2525.000000,2483.000000,2483.000000,2525.000000, 0.252097,0.247903,0.247903,0.252097, maf-5-some-pop,maf-5-all-pops 703 chr1 15543267 15543268 rs10927733 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4181.000000,827.000000, 0.834864,0.165136, maf-5-some-pop 703 chr1 15543353 15543354 rs17405463 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop,genotype-conflict 703 chr1 15544238 15544239 rs4297286 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 830.000000,4178.000000, 0.165735,0.834265, maf-5-some-pop 703 chr1 15544557 15544558 rs12062396 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 835.000000,4173.000000, 0.166733,0.833267, maf-5-some-pop 703 chr1 15544622 15544623 rs2312335 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop 703 chr1 15545009 15545010 rs10927734 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4083.000000,925.000000, 0.815296,0.184704, maf-5-some-pop,maf-5-all-pops 703 chr1 15545320 15545321 rs12118545 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop 703 chr1 15546076 15546077 rs3753313 0 - G G C/T genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1023.000000,3985.000000,3985.000000,1023.000000, 0.102137,0.397863,0.397863,0.102137, maf-5-some-pop 703 chr1 15548396 15548397 rs12124285 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop,genotype-conflict 703 chr1 15548635 15548636 rs10737909 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2857.000000,2151.000000, 0.570487,0.429513, maf-5-some-pop,maf-5-all-pops,microattr-tpa 703 chr1 15548672 15548673 rs4661327 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 446.000000,4562.000000, 0.089058,0.910942, maf-5-some-pop,genotype-conflict 703 chr1 15549557 15549558 rs16851448 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop 703 chr1 15550524 15550525 rs10803369 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2363.000000,2645.000000, 0.471845,0.528155, maf-5-some-pop,maf-5-all-pops 703 chr1 15553763 15553764 rs6692531 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2900.000000,2108.000000, 0.579073,0.420927, maf-5-some-pop,maf-5-all-pops 703 chr1 15558884 15558885 rs6429731 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1338.000000,3670.000000, 0.267173,0.732827, maf-5-some-pop,maf-5-all-pops 703 chr1 15559141 15559142 rs6429734 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop,maf-5-all-pops 703 chr1 15559787 15559788 rs1780590 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP, 2 A,C, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop,genotype-conflict 703 chr1 15566348 15566349 rs4661614 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop,genotype-conflict 703 chr1 15566698 15566699 rs10927744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4523.000000,485.000000, 0.903155,0.096845, maf-5-some-pop,genotype-conflict 703 chr1 15567799 15567800 rs7549959 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 703 chr1 15569711 15569712 rs11585810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 836.000000,4172.000000, 0.166933,0.833067, maf-5-some-pop,genotype-conflict 703 chr1 15572132 15572133 rs1752020 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 968.000000,4040.000000,4040.000000,968.000000, 0.096645,0.403355,0.403355,0.096645, maf-5-some-pop 703 chr1 15576104 15576105 rs2489670 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4013.000000,995.000000, 0.801318,0.198682, maf-5-some-pop 703 chr1 15578194 15578195 rs1622686 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2490.000000,2518.000000,2518.000000,2490.000000, 0.248602,0.251398,0.251398,0.248602, maf-5-some-pop,maf-5-all-pops 703 chr1 15579335 15579336 rs1752000 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4014.000000,994.000000,994.000000,4014.000000, 0.400759,0.099241,0.099241,0.400759, maf-5-some-pop 703 chr1 15579369 15579370 rs2479073 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 994.000000,4014.000000,4014.000000,994.000000, 0.099241,0.400759,0.400759,0.099241, maf-5-some-pop 703 chr1 15579778 15579779 rs1104686 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1953.000000,3055.000000, 0.389976,0.610024, maf-5-some-pop,maf-5-all-pops 703 chr1 15585612 15585613 rs7520597 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 703 chr1 15588758 15588759 rs6676098 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 966.000000,4042.000000, 0.192891,0.807109, maf-5-some-pop,genotype-conflict 703 chr1 15589885 15589886 rs10927751 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop 703 chr1 15591928 15591929 rs10927753 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3389.000000,1619.000000, 0.676717,0.323283, maf-5-some-pop,maf-5-all-pops 703 chr1 15593136 15593137 rs7526385 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,genotype-conflict 703 chr1 15593665 15593666 rs4661617 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3396.000000,1612.000000, 0.678115,0.321885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 703 chr1 15595533 15595534 rs6679212 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 704 chr1 15600048 15600049 rs10927757 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3229.000000,1779.000000, 0.644768,0.355232, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15600084 15600085 rs10927758 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1908.000000,3100.000000, 0.380990,0.619010, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15600648 15600649 rs12074861 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 704 chr1 15600798 15600799 rs4661618 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2259.000000,2749.000000, 0.451078,0.548922, maf-5-some-pop,maf-5-all-pops 704 chr1 15608417 15608418 rs12725686 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4304.000000,704.000000, 0.859425,0.140575, maf-5-some-pop 704 chr1 15608876 15608877 rs575530 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1123.000000,3885.000000,3885.000000,1123.000000, 0.112121,0.387879,0.387879,0.112121, maf-5-some-pop 704 chr1 15610003 15610004 rs10927765 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1964.000000,3044.000000, 0.392173,0.607827, maf-5-some-pop,maf-5-all-pops 704 chr1 15617053 15617054 rs10803377 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3726.000000,1282.000000, 0.744010,0.255990, maf-5-some-pop,maf-5-all-pops 704 chr1 15631431 15631432 rs6693441 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop 704 chr1 15631648 15631649 rs17377023 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,genotype-conflict 704 chr1 15636721 15636722 rs12088536 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop 704 chr1 15639580 15639581 rs10489962 0 + A A A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop 704 chr1 15647827 15647828 rs7518884 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops 704 chr1 15653871 15653872 rs10127456 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1101.000000,3907.000000, 0.219848,0.780152, maf-5-some-pop,genotype-conflict 704 chr1 15662605 15662606 rs7549599 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3969.000000,1039.000000, 0.792532,0.207468, maf-5-some-pop 704 chr1 15663383 15663384 rs2496331 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4318.000000,690.000000,690.000000,4318.000000, 0.431110,0.068890,0.068890,0.431110, maf-5-some-pop 704 chr1 15663430 15663431 rs7549759 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,genotype-conflict 704 chr1 15663943 15663944 rs11582833 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop,genotype-conflict 704 chr1 15668275 15668276 rs763821 0 - G G C/T genomic single unknown 0 0 coding-synon,intron,missense exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1732.000000,3276.000000,3276.000000,1732.000000, 0.172923,0.327077,0.327077,0.172923, maf-5-some-pop,genotype-conflict 704 chr1 15668318 15668319 rs12126178 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,genotype-conflict 704 chr1 15668814 15668815 rs2479084 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4375.000000,633.000000,633.000000,4375.000000, 0.436801,0.063199,0.063199,0.436801, maf-5-some-pop 704 chr1 15674268 15674269 rs2479082 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 140.000000,4868.000000,4868.000000,140.000000, 0.013978,0.486022,0.486022,0.013978, maf-5-some-pop 704 chr1 15677931 15677932 rs7532826 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2681.000000,2327.000000, 0.535343,0.464657, maf-5-some-pop,maf-5-all-pops 704 chr1 15680450 15680451 rs2473358 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2711.000000,2297.000000, 0.541334,0.458666, maf-5-some-pop,maf-5-all-pops 704 chr1 15681020 15681021 rs12081714 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 704 chr1 15681388 15681389 rs7545204 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1787.000000,3221.000000, 0.356829,0.643171, maf-5-some-pop,maf-5-all-pops 704 chr1 15682481 15682482 rs2473360 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2343.000000,2665.000000, 0.467851,0.532149, maf-5-some-pop,maf-5-all-pops 704 chr1 15683408 15683409 rs11582182 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 A,T, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 704 chr1 15686005 15686006 rs1751998 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1525.000000,3483.000000,3483.000000,1525.000000, 0.152256,0.347744,0.347744,0.152256, maf-5-some-pop,maf-5-all-pops 704 chr1 15687058 15687059 rs4661330 0 + A A A/G genomic single unknown 0 0 missense exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3741.000000,1267.000000, 0.747005,0.252995, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15691539 15691540 rs10803382 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops 704 chr1 15697182 15697183 rs876295 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3044.000000,1964.000000,1964.000000,3044.000000, 0.303914,0.196086,0.196086,0.303914, maf-5-some-pop,maf-5-all-pops 704 chr1 15699116 15699117 rs16851617 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop 704 chr1 15699326 15699327 rs2249097 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15701115 15701116 rs10927776 0 + C C C/T genomic single unknown 0 0 missense exact 1 11 1000GENOMES,AFFY,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,genotype-conflict 704 chr1 15701670 15701671 rs3765365 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop 704 chr1 15702129 15702130 rs17368978 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 704 chr1 15702433 15702434 rs17368999 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4762.000000,246.000000, 0.950879,0.049121, maf-5-some-pop 704 chr1 15705030 15705031 rs742365 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 420.000000,4588.000000,4588.000000,420.000000, 0.041933,0.458067,0.458067,0.041933, maf-5-some-pop 704 chr1 15705071 15705072 rs736185 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 626.000000,4382.000000, 0.125000,0.875000, maf-5-some-pop,genotype-conflict 704 chr1 15705129 15705130 rs742366 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 227.000000,4781.000000,4781.000000,227.000000, 0.022664,0.477336,0.477336,0.022664, maf-5-some-pop 704 chr1 15707136 15707137 rs3737690 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop 704 chr1 15710112 15710113 rs3737691 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop,maf-5-all-pops 704 chr1 15710410 15710411 rs2496338 0 - G G C/G genomic single unknown 0 0 intron,missense exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15711522 15711523 rs6429737 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,G, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop 704 chr1 15718469 15718470 rs2496330 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2888.000000,2120.000000,2120.000000,2888.000000, 0.288339,0.211661,0.211661,0.288339, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15723842 15723843 rs2294490 0 + G G A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1556.000000,3452.000000, 0.310703,0.689297, maf-5-some-pop,maf-5-all-pops 704 chr1 15724002 15724003 rs2253371 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3405.000000,1603.000000, 0.679912,0.320088, maf-5-some-pop,maf-5-all-pops 704 chr1 15724032 15724033 rs2253372 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1277.000000,3731.000000, 0.254992,0.745008, maf-5-some-pop,maf-5-all-pops 704 chr1 15726115 15726116 rs1883426 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1309.000000,3699.000000, 0.261382,0.738618, maf-5-some-pop,maf-5-all-pops 704 chr1 15726790 15726791 rs742362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop 704 chr1 15727347 15727348 rs12561771 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4390.000000,618.000000, 0.876597,0.123403, maf-5-some-pop 704 chr1 15728138 15728139 rs12562864 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 3726.000000,1282.000000, 0.744010,0.255990, maf-5-some-pop,maf-5-all-pops,genotype-conflict 704 chr1 15728288 15728289 rs2473344 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3704.000000,1304.000000, 0.739617,0.260383, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15731140 15731141 rs6429739 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,maf-5-all-pops 705 chr1 15733393 15733394 rs2092324 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3264.000000,1744.000000, 0.651757,0.348243, maf-5-some-pop,maf-5-all-pops 705 chr1 15734300 15734301 rs12562216 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15734386 15734387 rs16851637 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 705 chr1 15743883 15743884 rs2496321 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3499.000000,1509.000000,1509.000000,3499.000000, 0.349341,0.150659,0.150659,0.349341, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15759546 15759547 rs6700655 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1830.000000,3178.000000, 0.365415,0.634585, maf-5-some-pop,maf-5-all-pops 705 chr1 15763339 15763340 rs6693417 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2840.000000,2168.000000, 0.567093,0.432907, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15779112 15779113 rs16851653 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 571.000000,4437.000000, 0.114018,0.885982, maf-5-some-pop 705 chr1 15783770 15783771 rs16851662 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4267.000000,741.000000, 0.852037,0.147963, maf-5-some-pop 705 chr1 15788268 15788269 rs3737696 0 + A A A/C genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15788490 15788491 rs3737697 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3564.000000,1444.000000, 0.711661,0.288339, maf-5-some-pop,maf-5-all-pops 705 chr1 15789296 15789297 rs3815787 0 + A A A/C/T genomic single unknown 0 0 coding-synon exact 1 SingleClassTriAllelic,InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop 705 chr1 15789732 15789733 rs3815792 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3337.000000,1671.000000, 0.666334,0.333666, maf-5-some-pop 705 chr1 15792425 15792426 rs2901964 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 3469.000000,1539.000000, 0.692692,0.307308, maf-5-some-pop,maf-5-all-pops,microattr-tpa 705 chr1 15796713 15796714 rs7556116 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1209.000000,3799.000000, 0.241414,0.758586, maf-5-some-pop,maf-5-all-pops 705 chr1 15796807 15796808 rs10927791 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2712.000000,2296.000000, 0.541534,0.458466, maf-5-some-pop,genotype-conflict 705 chr1 15811345 15811346 rs6675825 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15814185 15814186 rs6667862 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1962.000000,3046.000000, 0.391773,0.608227, maf-5-some-pop,maf-5-all-pops 705 chr1 15815578 15815579 rs6429746 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1806.000000,3202.000000, 0.360623,0.639377, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15821399 15821400 rs4646093 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1733.000000,3275.000000,3275.000000,1733.000000, 0.173023,0.326977,0.326977,0.173023, maf-5-some-pop,maf-5-all-pops 705 chr1 15821584 15821585 rs4233532 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2080.000000,2928.000000, 0.415335,0.584665, maf-5-some-pop,maf-5-all-pops 705 chr1 15828593 15828594 rs4646070 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EGP_SNPS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 705 chr1 15828761 15828762 rs4646067 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 107.000000,4901.000000,4901.000000,107.000000, 0.010683,0.489317,0.489317,0.010683, maf-5-some-pop 705 chr1 15830862 15830863 rs4646054 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,EGP_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 103.000000,4905.000000,4905.000000,103.000000, 0.010284,0.489716,0.489716,0.010284, maf-5-some-pop 705 chr1 15831459 15831460 rs4646049 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4545.000000,463.000000,463.000000,4545.000000, 0.453774,0.046226,0.046226,0.453774, maf-5-some-pop,genotype-conflict 705 chr1 15831782 15831783 rs4646047 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2079.000000,2929.000000,2929.000000,2079.000000, 0.207568,0.292432,0.292432,0.207568, maf-5-some-pop,maf-5-all-pops 705 chr1 15831991 15831992 rs4646045 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2072.000000,2936.000000,2936.000000,2072.000000, 0.206869,0.293131,0.293131,0.206869, maf-5-some-pop,maf-5-all-pops 705 chr1 15832066 15832067 rs4646044 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2034.000000,2974.000000,2974.000000,2034.000000, 0.203075,0.296925,0.296925,0.203075, maf-5-some-pop,maf-5-all-pops 705 chr1 15834359 15834360 rs2020902 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,UWGC, 4 A,C,G,T, 4543.000000,465.000000,465.000000,4543.000000, 0.453574,0.046426,0.046426,0.453574, maf-5-some-pop 705 chr1 15841741 15841742 rs2042370 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2927.000000,2081.000000,2081.000000,2927.000000, 0.292232,0.207768,0.207768,0.292232, maf-5-some-pop,maf-5-all-pops 705 chr1 15843243 15843244 rs2042369 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1139.000000,3869.000000, 0.227436,0.772564, maf-5-some-pop 705 chr1 15843854 15843855 rs4646011 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2082.000000,2926.000000,2926.000000,2082.000000, 0.207867,0.292133,0.292133,0.207867, maf-5-some-pop,maf-5-all-pops,genotype-conflict 705 chr1 15849002 15849003 rs4645995 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 705 chr1 15857133 15857134 rs10927796 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 706 chr1 15860239 15860240 rs16851731 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3827.000000,1181.000000, 0.764177,0.235823, maf-5-some-pop,maf-5-all-pops,genotype-conflict 706 chr1 15860562 15860563 rs6703016 0 + T T A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 3 A,G,T, 3119.000000,58.000000,1831.000000, 0.622804,0.011582,0.365615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 706 chr1 15860802 15860803 rs11583306 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3857.000000,1151.000000, 0.770168,0.229832, maf-5-some-pop,maf-5-all-pops 706 chr1 15869898 15869899 rs12124078 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3217.000000,1791.000000, 0.642372,0.357628, maf-5-some-pop,maf-5-all-pops 706 chr1 15870502 15870503 rs16851781 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,genotype-conflict 706 chr1 15871153 15871154 rs7528011 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 706 chr1 15874278 15874279 rs11579378 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2027.000000,2981.000000, 0.404752,0.595248, maf-5-some-pop,maf-5-all-pops 706 chr1 15900516 15900517 rs41486146 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 706 chr1 15900536 15900537 rs6429753 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1461.000000,3547.000000, 0.291733,0.708267, maf-5-some-pop,maf-5-all-pops,genotype-conflict 706 chr1 15907907 15907908 rs12691551 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 2544.000000,2464.000000, 0.507987,0.492013, maf-5-some-pop,maf-5-all-pops 706 chr1 15909849 15909850 rs6429757 0 + C C C/G genomic single unknown 0 0 missense exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1837.000000,3171.000000, 0.366813,0.633187, maf-5-some-pop,maf-5-all-pops,genotype-conflict 706 chr1 15909894 15909895 rs6429758 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1939.000000,3069.000000, 0.387181,0.612819, maf-5-some-pop,maf-5-all-pops 706 chr1 15910002 15910003 rs6429759 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1937.000000,3071.000000, 0.386781,0.613219, maf-5-some-pop,maf-5-all-pops 706 chr1 15918675 15918676 rs3856275 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop,genotype-conflict 706 chr1 15918738 15918739 rs16851819 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1360.000000,3648.000000, 0.271565,0.728435, maf-5-some-pop 706 chr1 15922370 15922371 rs6669417 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 3648.000000,1360.000000, 0.728435,0.271565, maf-5-some-pop,genotype-conflict 706 chr1 15932931 15932932 rs12385690 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1413.000000,3595.000000, 0.282149,0.717851, maf-5-some-pop 706 chr1 15936853 15936854 rs7545080 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 706 chr1 15947946 15947947 rs12071463 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop 706 chr1 15950627 15950628 rs16851876 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3749.000000,1259.000000, 0.748602,0.251398, maf-5-some-pop 706 chr1 15954428 15954429 rs10927815 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,genotype-conflict 706 chr1 15959885 15959886 rs3795762 0 + C C C/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1703.000000,3305.000000, 0.340056,0.659944, maf-5-some-pop,maf-5-all-pops,genotype-conflict 706 chr1 15960607 15960608 rs11808281 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,KRIBB_YJKIM, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 706 chr1 15968609 15968610 rs6429769 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3532.000000,1476.000000, 0.705272,0.294728, maf-5-some-pop 706 chr1 15968769 15968770 rs6696286 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, maf-5-some-pop 706 chr1 15974813 15974814 rs6662685 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop 706 chr1 15976950 15976951 rs7536923 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 706 chr1 15983300 15983301 rs941686 0 - A A C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4185.000000,823.000000,823.000000,4185.000000, 0.417831,0.082169,0.082169,0.417831, maf-5-some-pop,genotype-conflict 706 chr1 15985305 15985306 rs17448778 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1724.000000,3284.000000, 0.344249,0.655751, maf-5-some-pop,genotype-conflict 706 chr1 15985939 15985940 rs6695903 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1712.000000,3296.000000, 0.341853,0.658147, maf-5-some-pop 707 chr1 15993337 15993338 rs10492987 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1862.000000,3146.000000, 0.371805,0.628195, maf-5-some-pop,genotype-conflict 707 chr1 15996554 15996555 rs10733139 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1838.000000,3170.000000, 0.367013,0.632987, maf-5-some-pop,maf-5-all-pops 707 chr1 15996857 15996858 rs7556473 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop 707 chr1 16005791 16005792 rs12082523 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,genotype-conflict 707 chr1 16012656 16012657 rs6692555 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop 707 chr1 16015318 16015319 rs12075016 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 791.000000,4217.000000, 0.157947,0.842053, maf-5-some-pop 707 chr1 16015783 16015784 rs7546138 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 767.000000,4241.000000, 0.153155,0.846845, maf-5-some-pop 707 chr1 16020501 16020502 rs7516683 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1645.000000,3363.000000, 0.328474,0.671526, maf-5-some-pop 707 chr1 16034200 16034201 rs10927835 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 763.000000,4245.000000, 0.152356,0.847644, maf-5-some-pop 707 chr1 16046108 16046109 rs1006147 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3474.000000,1534.000000,1534.000000,3474.000000, 0.346845,0.153155,0.153155,0.346845, maf-5-some-pop,genotype-conflict 707 chr1 16048037 16048038 rs12092485 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1562.000000,3446.000000, 0.311901,0.688099, maf-5-some-pop 707 chr1 16048113 16048114 rs12065705 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 707 chr1 16049284 16049285 rs41378647 0 - C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 707 chr1 16049892 16049893 rs6668919 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3444.000000,1564.000000, 0.687700,0.312300, maf-5-some-pop 707 chr1 16053492 16053493 rs41393951 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 4 A,C,G,T, 1187.000000,3821.000000,3821.000000,1187.000000, 0.118510,0.381490,0.381490,0.118510, maf-5-some-pop 707 chr1 16053808 16053809 rs7517033 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,CORNELL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 707 chr1 16059693 16059694 rs6682484 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 707 chr1 16075127 16075128 rs2062595 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 760.000000,4248.000000,4248.000000,760.000000, 0.075879,0.424121,0.424121,0.075879, maf-5-some-pop 707 chr1 16080170 16080171 rs12725198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 887.000000,4121.000000, 0.177117,0.822883, maf-5-some-pop,microattr-tpa,genotype-conflict 707 chr1 16087823 16087824 rs12091731 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3670.000000,1338.000000, 0.732827,0.267173, maf-5-some-pop,maf-5-all-pops 707 chr1 16109668 16109669 rs10737910 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 793.000000,4215.000000, 0.158347,0.841653, maf-5-some-pop,maf-5-all-pops,genotype-conflict 707 chr1 16115332 16115333 rs1472554 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3224.000000,1784.000000, 0.643770,0.356230, maf-5-some-pop 708 chr1 16125960 16125961 rs1000997 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3402.000000,1606.000000, 0.679313,0.320687, maf-5-some-pop,maf-5-all-pops 708 chr1 16126675 16126676 rs2013745 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1185.000000,3823.000000, 0.236621,0.763379, maf-5-some-pop,maf-5-all-pops 708 chr1 16137773 16137774 rs16852021 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 708 chr1 16138058 16138059 rs12121764 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1910.000000,3098.000000, 0.381390,0.618610, maf-5-some-pop 708 chr1 16138094 16138095 rs16852022 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop 708 chr1 16142959 16142960 rs2862162 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3831.000000,1177.000000, 0.764976,0.235024, maf-5-some-pop 708 chr1 16153884 16153885 rs4614254 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4122.000000,886.000000, 0.823083,0.176917, maf-5-some-pop,genotype-conflict 708 chr1 16165660 16165661 rs10927864 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3817.000000,1191.000000, 0.762181,0.237819, maf-5-some-pop 708 chr1 16167798 16167799 rs12135073 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 4265.000000,743.000000, 0.851637,0.148363, maf-5-some-pop,genotype-conflict 708 chr1 16167854 16167855 rs10737911 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2204.000000,2804.000000, 0.440096,0.559904, maf-5-some-pop,maf-5-all-pops 708 chr1 16196758 16196759 rs7552077 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2805.000000,2203.000000, 0.560104,0.439896, maf-5-some-pop,maf-5-all-pops 708 chr1 16201501 16201502 rs16852052 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop,genotype-conflict 708 chr1 16205101 16205102 rs6665768 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop,maf-5-all-pops 708 chr1 16226872 16226873 rs12079958 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 708 chr1 16251899 16251900 rs10927873 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop,microattr-tpa 708 chr1 16252532 16252533 rs16852096 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops,genotype-conflict 709 chr1 16252995 16252996 rs848206 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,genotype-conflict 709 chr1 16259812 16259813 rs848210 0 + A A A/G genomic single unknown 0 0 missense exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1758.000000,3250.000000, 0.351038,0.648962, maf-5-some-pop 709 chr1 16267146 16267147 rs848215 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4400.000000,608.000000, 0.878594,0.121406, maf-5-some-pop 709 chr1 16273994 16273995 rs742617 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 709 chr1 16275246 16275247 rs2268341 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3567.000000,1441.000000, 0.712260,0.287740, maf-5-some-pop,genotype-conflict 709 chr1 16279385 16279386 rs926619 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,genotype-conflict 709 chr1 16282775 16282776 rs4661346 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1174.000000,3834.000000, 0.234425,0.765575, maf-5-some-pop 709 chr1 16296694 16296695 rs41339145 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop 709 chr1 16299311 16299312 rs10927875 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3900.000000,1108.000000, 0.778754,0.221246, maf-5-some-pop,microattr-tpa,genotype-conflict 709 chr1 16302981 16302982 rs698893 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,KYUGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3225.000000,1783.000000, 0.643970,0.356030, maf-5-some-pop,maf-5-all-pops 709 chr1 16306845 16306846 rs3979179 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1081.000000,3927.000000, 0.215855,0.784145, maf-5-some-pop 709 chr1 16310108 16310109 rs12046247 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop 709 chr1 16310287 16310288 rs698894 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop 709 chr1 16314725 16314726 rs17383551 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 709 chr1 16317705 16317706 rs848306 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 535.000000,4473.000000,4473.000000,535.000000, 0.053415,0.446585,0.446585,0.053415, maf-5-some-pop 709 chr1 16321009 16321010 rs4661679 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3241.000000,1767.000000, 0.647165,0.352835, maf-5-some-pop 709 chr1 16327421 16327422 rs1739828 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop,maf-5-all-pops 709 chr1 16331908 16331909 rs1763613 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 980.000000,4028.000000,4028.000000,980.000000, 0.097843,0.402157,0.402157,0.097843, maf-5-some-pop,maf-5-all-pops 709 chr1 16331982 16331983 rs1739834 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1024.000000,3984.000000, 0.204473,0.795527, maf-5-some-pop,maf-5-all-pops 709 chr1 16332570 16332571 rs1763612 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 421.000000,4587.000000,4587.000000,421.000000, 0.042033,0.457967,0.457967,0.042033, maf-5-some-pop,genotype-conflict 709 chr1 16333568 16333569 rs1763611 0 - T T A/C/G/T genomic single unknown 0 0 near-gene-3 exact 1 SingleClassQuadAllelic 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 460.000000,4548.000000,4548.000000,460.000000, 0.045927,0.454073,0.454073,0.045927, maf-5-some-pop,genotype-conflict 709 chr1 16335526 16335527 rs1763610 0 - G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 709 chr1 16337251 16337252 rs1739836 0 + C C C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 489.000000,4519.000000, 0.097644,0.902356, maf-5-some-pop,genotype-conflict 709 chr1 16344663 16344664 rs872222 0 - G G C/T genomic single unknown 0 0 intron,missense,untranslated-5 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2184.000000,2824.000000,2824.000000,2184.000000, 0.218051,0.281949,0.281949,0.218051, maf-5-some-pop,maf-5-all-pops 709 chr1 16344826 16344827 rs1056207 0 - G G C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 267.000000,4741.000000,4741.000000,267.000000, 0.026657,0.473343,0.473343,0.026657, maf-5-some-pop,genotype-conflict 709 chr1 16345254 16345255 rs3754329 0 - C C G/T genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 451.000000,4557.000000,4557.000000,451.000000, 0.045028,0.454972,0.454972,0.045028, maf-5-some-pop 709 chr1 16363939 16363940 rs6604904 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop,maf-5-all-pops 709 chr1 16368132 16368133 rs6696416 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 596.000000,4412.000000, 0.119010,0.880990, maf-5-some-pop,genotype-conflict 709 chr1 16368402 16368403 rs6683445 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2497.000000,2511.000000, 0.498602,0.501398, maf-5-some-pop,maf-5-all-pops 709 chr1 16368976 16368977 rs2007471 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3085.000000,1923.000000, 0.616014,0.383986, maf-5-some-pop,maf-5-all-pops,genotype-conflict 709 chr1 16374329 16374330 rs945403 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 794.000000,4214.000000, 0.158546,0.841454, maf-5-some-pop,genotype-conflict 709 chr1 16379007 16379008 rs2050522 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1256.000000,3752.000000, 0.250799,0.749201, maf-5-some-pop 709 chr1 16379415 16379416 rs12015135 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop 710 chr1 16440391 16440392 rs7543472 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1160.000000,3848.000000, 0.231629,0.768371, clinically-assoc,maf-5-some-pop,has-omim-omia,genotype-conflict 710 chr1 16441727 16441728 rs11260867 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4605.000000,403.000000, 0.919529,0.080471, clinically-assoc,maf-5-some-pop,has-omim-omia,genotype-conflict 710 chr1 16449535 16449536 rs6698719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 710 chr1 16449679 16449680 rs6684802 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop 710 chr1 16449745 16449746 rs11260711 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3812.000000,1196.000000, 0.761182,0.238818, maf-5-some-pop,maf-5-all-pops 710 chr1 16474700 16474701 rs6603867 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1738.000000,3270.000000, 0.347045,0.652955, clinically-assoc,maf-5-some-pop,has-omim-omia 710 chr1 16484981 16484982 rs16852532 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop,maf-5-all-pops 710 chr1 16485810 16485811 rs11260822 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1881.000000,3127.000000, 0.375599,0.624401, maf-5-some-pop,maf-5-all-pops 710 chr1 16488266 16488267 rs12401559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop 710 chr1 16488668 16488669 rs12408813 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1057.000000,3951.000000, 0.211062,0.788938, maf-5-some-pop,genotype-conflict 710 chr1 16488822 16488823 rs904107 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 805.000000,4203.000000, 0.160743,0.839257, maf-5-some-pop,genotype-conflict 710 chr1 16495845 16495846 rs4661715 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 878.000000,4130.000000, 0.175319,0.824681, maf-5-some-pop,maf-5-all-pops 710 chr1 16495913 16495914 rs4661717 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,maf-5-all-pops 710 chr1 16498047 16498048 rs11588341 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2832.000000,2176.000000, 0.565495,0.434505, maf-5-some-pop,maf-5-all-pops 710 chr1 16507383 16507384 rs4233540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1898.000000,3110.000000, 0.378994,0.621006, maf-5-some-pop,maf-5-all-pops 710 chr1 16507617 16507618 rs6677710 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3475.000000,1533.000000, 0.693890,0.306110, maf-5-some-pop,maf-5-all-pops 710 chr1 16509694 16509695 rs12058819 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop 710 chr1 16510797 16510798 rs4537547 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1526.000000,3482.000000, 0.304712,0.695288, maf-5-some-pop,maf-5-all-pops 710 chr1 16514368 16514369 rs4661721 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 710 chr1 16514485 16514486 rs16852561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 711 chr1 16518865 16518866 rs6697459 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3770.000000,1238.000000, 0.752796,0.247204, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16525548 16525549 rs221032 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop,maf-5-all-pops 711 chr1 16526528 16526529 rs221035 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16530849 16530850 rs221049 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1341.000000,3667.000000, 0.267772,0.732228, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16534645 16534646 rs221058 0 + C C C/G genomic single unknown 0 0 missense exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop,maf-5-all-pops 711 chr1 16539576 16539577 rs12751725 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16539812 16539813 rs12728772 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4104.000000,904.000000, 0.819489,0.180511, maf-5-some-pop,maf-5-all-pops 711 chr1 16567621 16567622 rs6672616 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 692.000000,4316.000000, 0.138179,0.861821, maf-5-some-pop,maf-5-all-pops 711 chr1 16574381 16574382 rs6693451 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3653.000000,1355.000000, 0.729433,0.270567, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16575029 16575030 rs17369676 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 911.000000,4097.000000, 0.181909,0.818091, maf-5-some-pop,genotype-conflict 711 chr1 16579069 16579070 rs4661729 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3778.000000,1230.000000, 0.754393,0.245607, maf-5-some-pop,maf-5-all-pops 711 chr1 16579872 16579873 rs1002703 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop 711 chr1 16585817 16585818 rs10489599 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4095.000000,913.000000,913.000000,4095.000000, 0.408846,0.091154,0.091154,0.408846, maf-5-some-pop 711 chr1 16599489 16599490 rs4661360 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3673.000000,1335.000000, 0.733427,0.266573, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16602932 16602933 rs4661733 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4097.000000,911.000000, 0.818091,0.181909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16603143 16603144 rs12144597 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,T, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16607870 16607871 rs11590217 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 3678.000000,1330.000000, 0.734425,0.265575, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16617811 16617812 rs11260718 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 911.000000,4097.000000, 0.181909,0.818091, maf-5-some-pop,maf-5-all-pops,genotype-conflict 711 chr1 16620159 16620160 rs2994142 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3691.000000,1317.000000, 0.737021,0.262979, maf-5-some-pop,maf-5-all-pops 711 chr1 16620588 16620589 rs11260720 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1331.000000,3677.000000, 0.265775,0.734225, maf-5-some-pop,maf-5-all-pops 711 chr1 16621431 16621432 rs2983160 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4772.000000,236.000000,236.000000,4772.000000, 0.476438,0.023562,0.023562,0.476438, maf-5-some-pop 711 chr1 16622545 16622546 rs10489597 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 711 chr1 16627271 16627272 rs12068146 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop 711 chr1 16640071 16640072 rs11260725 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3207.000000,1801.000000, 0.640375,0.359625, maf-5-some-pop,maf-5-all-pops 712 chr1 16656517 16656518 rs12131407 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop 712 chr1 16667540 16667541 rs11260731 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1273.000000,3735.000000, 0.254193,0.745807, maf-5-some-pop,maf-5-all-pops,genotype-conflict 712 chr1 16668932 16668933 rs11260732 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 668.000000,4340.000000, 0.133387,0.866613, maf-5-some-pop,maf-5-all-pops 712 chr1 16700792 16700793 rs11260738 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2554.000000,2454.000000, 0.509984,0.490016, maf-5-some-pop,maf-5-all-pops 712 chr1 16701097 16701098 rs11803997 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 712 chr1 16716373 16716374 rs612727 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1747.000000,3261.000000,3261.000000,1747.000000, 0.174421,0.325579,0.325579,0.174421, maf-5-some-pop,maf-5-all-pops 712 chr1 16717119 16717120 rs12131558 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop 712 chr1 16720398 16720399 rs12567262 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1833.000000,3175.000000, 0.366014,0.633986, maf-5-some-pop,maf-5-all-pops 712 chr1 16723138 16723139 rs16852669 0 + C C A/C genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SEQUENOM,SSMP, 2 A,C, 198.000000,4810.000000, 0.039537,0.960463, maf-5-some-pop 712 chr1 16731509 16731510 rs525409 0 + C C C/G genomic single unknown 0 0 ncRNA,missense exact 1 20 1000GENOMES,ABI,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop 712 chr1 16734626 16734627 rs681104 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2957.000000,2051.000000,2051.000000,2957.000000, 0.295228,0.204772,0.204772,0.295228, maf-5-some-pop,maf-5-all-pops 712 chr1 16739952 16739953 rs4661747 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1166.000000,3842.000000, 0.232827,0.767173, maf-5-some-pop,maf-5-all-pops 712 chr1 16740034 16740035 rs4661748 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3844.000000,1164.000000, 0.767572,0.232428, maf-5-some-pop,maf-5-all-pops 712 chr1 16759615 16759616 rs11260756 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3636.000000,1372.000000, 0.726038,0.273962, maf-5-some-pop,maf-5-all-pops,genotype-conflict 712 chr1 16771645 16771646 rs12071176 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop 712 chr1 16776803 16776804 rs279779 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2792.000000,2216.000000, 0.557508,0.442492, maf-5-some-pop,maf-5-all-pops,genotype-conflict 713 chr1 16777811 16777812 rs279781 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL, 2 C,G, 1138.000000,3870.000000, 0.227236,0.772764, maf-5-some-pop,maf-5-all-pops 713 chr1 16781446 16781447 rs279786 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1762.000000,3246.000000, 0.351837,0.648163, maf-5-some-pop,maf-5-all-pops 713 chr1 16785563 16785564 rs11543230 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,CGAP-GAI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO, 4 A,C,G,T, 114.000000,4894.000000,4894.000000,114.000000, 0.011382,0.488618,0.488618,0.011382, maf-5-some-pop,genotype-conflict 713 chr1 16786167 16786168 rs279023 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop 713 chr1 16794146 16794147 rs16852757 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,genotype-conflict 713 chr1 16794269 16794270 rs7515803 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SI_EXO,TISHKOFF,WI_SSAHASNP, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 713 chr1 16794916 16794917 rs149565 0 - C C A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2219.000000,2789.000000,2789.000000,2219.000000, 0.221546,0.278454,0.278454,0.221546, maf-5-some-pop,maf-5-all-pops,genotype-conflict 713 chr1 16795200 16795201 rs149562 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP, 2 C,T, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop,genotype-conflict 713 chr1 16796720 16796721 rs157252 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2962.000000,2046.000000, 0.591454,0.408546, maf-5-some-pop,maf-5-all-pops 713 chr1 16797755 16797756 rs157134 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1342.000000,3666.000000,3666.000000,1342.000000, 0.133986,0.366014,0.366014,0.133986, maf-5-some-pop 713 chr1 16804340 16804341 rs156847 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3446.000000,1562.000000,1562.000000,3446.000000, 0.344050,0.155950,0.155950,0.344050, maf-5-some-pop,maf-5-all-pops,genotype-conflict 713 chr1 16806924 16806925 rs12093260 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop 713 chr1 16806956 16806957 rs277446 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 713 chr1 16808693 16808694 rs277447 0 + C C A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,genotype-conflict 713 chr1 16814993 16814994 rs156851 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4810.000000,198.000000,198.000000,4810.000000, 0.480232,0.019768,0.019768,0.480232, maf-5-some-pop,genotype-conflict 713 chr1 16828501 16828502 rs696605 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2501.000000,2507.000000,2507.000000,2501.000000, 0.249700,0.250300,0.250300,0.249700, maf-5-some-pop,maf-5-all-pops 713 chr1 16830507 16830508 rs156869 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 713 chr1 16831862 16831863 rs7537985 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1124.000000,3884.000000, 0.224441,0.775559, maf-5-some-pop 713 chr1 16846034 16846035 rs156913 0 - C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 713 chr1 16895275 16895276 rs3983186 0 - G G A/C/G/T genomic single by-cluster,by-frequency,by-hapmap 0.00927 0.067566 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 10 AFFY,BL,BUSHMAN,ENSEMBL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,SSMP,TSC-CSHL, 3 A,C,T, 1.000000,428.000000,1.000000, 0.002326,0.995349,0.002326, 714 chr1 16920125 16920126 rs3863786 0 - G G C/T genomic single by-cluster,by-2hit-2allele,by-hapmap 0 0 unknown exact 1 SingleAlleleFreq 8 CSHL-HAPMAP,GMI,HGSV,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 1 C, 4.000000, 1.000000, 714 chr1 16920270 16920271 rs9724879 0 + G G G/T genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.033403 0.124843 unknown exact 1 6 AFFY,BCM_SSAHASNP,CSHL-HAPMAP,HGSV,KRIBB_YJKIM,TISHKOFF, 2 G,T, 405.000000,7.000000, 0.983010,0.016990, 714 chr1 16923086 16923087 rs675952 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 AFFY,KRIBB_YJKIM,KWOK,SC_JCM,TSC-CSHL, 2 A,T, 110.000000,372.000000, 0.228216,0.771784, maf-5-some-pop,maf-5-all-pops 714 chr1 16923247 16923248 rs3863787 0 - A A C/T genomic single by-cluster,by-frequency,by-hapmap 0.061793 0.164554 unknown exact 1 3 AFFY,SC_JCM,TSC-CSHL, 2 C,T, 27.000000,819.000000, 0.031915,0.968085, maf-5-some-pop,maf-5-all-pops,genotype-conflict 714 chr1 16924150 16924151 rs4316363 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,genotype-conflict 714 chr1 16924334 16924335 rs3851919 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,HGSV,KRIBB_YJKIM,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4591.000000,417.000000,417.000000,4591.000000, 0.458367,0.041633,0.041633,0.458367, maf-5-some-pop,maf-5-all-pops,genotype-conflict 714 chr1 16927772 16927773 rs1759260 0 - A A C/T genomic single unknown 0 0 unknown exact 1 5 AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 C,T, 6.000000,414.000000, 0.014286,0.985714, maf-5-some-pop,maf-5-all-pops 714 chr1 16931642 16931643 rs11260821 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 22.000000,390.000000, 0.053398,0.946602, maf-5-some-pop 714 chr1 16943843 16943844 rs11260833 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.123855 0.215841 unknown exact 1 7 AFFY,COMPLETE_GENOMICS,GMI,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 26.000000,366.000000, 0.066326,0.933673, maf-5-some-pop 714 chr1 16945357 16945358 rs945905 0 - G G C/G genomic single by-cluster,by-frequency,by-hapmap 0.064127 0.167186 ncRNA exact 1 5 AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 C,G, 379.000000,13.000000, 0.966837,0.033163, maf-5-some-pop 714 chr1 16969094 16969095 rs849703 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 4045.000000,963.000000,963.000000,4045.000000, 0.403854,0.096146,0.096146,0.403854, maf-5-some-pop,maf-5-all-pops 714 chr1 17022268 17022269 rs530969 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 714 chr1 17035599 17035600 rs11260895 0 + C C A/C genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.250865 0.249999 intron exact 1 10 AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 35.000000,203.000000, 0.147059,0.852941, maf-5-some-pop,maf-5-all-pops 715 chr1 17045645 17045646 rs3915536 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.282869 0.24783 intron exact 1 10 AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 360.000000,74.000000, 0.829493,0.170507, maf-5-some-pop,maf-5-all-pops 715 chr1 17048432 17048433 rs9727887 0 + G G G/T genomic single by-cluster,by-2hit-2allele,by-hapmap 0 0 near-gene-5 exact 1 SingleAlleleFreq 5 AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 1 G, 290.000000, 1.000000, 715 chr1 17048872 17048873 rs2610572 0 + G G A/G genomic single by-cluster,by-2hit-2allele 0.375 0.216506 unknown exact 1 4 AFFY,BUSHMAN,HGSV,SC_JCM, 2 A,G, 1.000000,3.000000, 0.250000,0.750000, 715 chr1 17082700 17082701 rs1831696 0 - A A A/T genomic single by-cluster 0 0 untranslated-3 exact 1 5 AFFY,BCMHGSC_JDW,GMI,SC_JCM,TSC-CSHL, 0 716 chr1 17246170 17246171 rs7530021 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,genotype-conflict 716 chr1 17282424 17282425 rs2143808 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 803.000000,4205.000000,4205.000000,803.000000, 0.080172,0.419828,0.419828,0.080172, maf-5-some-pop 716 chr1 17283074 17283075 rs761424 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 4 1000GENOMES,AFFY,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 55.000000,4953.000000,4953.000000,55.000000, 0.005491,0.494509,0.494509,0.005491, 716 chr1 17286209 17286210 rs4920355 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop 716 chr1 17290057 17290058 rs6696928 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop 716 chr1 17298495 17298496 rs7513616 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3042.000000,1966.000000, 0.607428,0.392572, maf-5-some-pop,maf-5-all-pops,genotype-conflict 716 chr1 17299726 17299727 rs11203277 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop,genotype-conflict 716 chr1 17299982 17299983 rs12745538 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BL,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,G, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,genotype-conflict 717 chr1 17301671 17301672 rs761423 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CGM_KYOTO,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3116.000000,1892.000000,1892.000000,3116.000000, 0.311102,0.188898,0.188898,0.311102, maf-5-some-pop,maf-5-all-pops 717 chr1 17308157 17308158 rs9435732 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3343.000000,1665.000000, 0.667532,0.332468, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17314701 17314702 rs3738815 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1457.000000,3551.000000,3551.000000,1457.000000, 0.145467,0.354533,0.354533,0.145467, maf-5-some-pop,maf-5-all-pops 717 chr1 17325954 17325955 rs6684770 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1610.000000,3398.000000, 0.321486,0.678514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17340877 17340878 rs2647168 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 523.000000,4485.000000,4485.000000,523.000000, 0.052216,0.447784,0.447784,0.052216, maf-5-some-pop,genotype-conflict 717 chr1 17342923 17342924 rs9435739 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2393.000000,2615.000000, 0.477835,0.522165, maf-5-some-pop 717 chr1 17348846 17348847 rs761420 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 717 chr1 17359675 17359676 rs1022580 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 33 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,GSK-GENETICS,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LARRIBA,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4803.000000,205.000000,205.000000,4803.000000, 0.479533,0.020467,0.020467,0.479533, maf-5-some-pop,genotype-conflict 717 chr1 17366870 17366871 rs4920653 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1843.000000,3165.000000, 0.368011,0.631989, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17371222 17371223 rs2647169 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,GSK-GENETICS,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 532.000000,4476.000000,4476.000000,532.000000, 0.053115,0.446885,0.446885,0.053115, maf-5-some-pop 717 chr1 17371684 17371685 rs732679 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2380.000000,2628.000000,2628.000000,2380.000000, 0.237620,0.262380,0.262380,0.237620, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17371754 17371755 rs10887994 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1731.000000,3277.000000, 0.345647,0.654353, maf-5-some-pop,maf-5-all-pops 717 chr1 17372396 17372397 rs11203287 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop,maf-5-all-pops 717 chr1 17374662 17374663 rs7536679 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17374687 17374688 rs7545499 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17374741 17374742 rs7545518 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3277.000000,1731.000000, 0.654353,0.345647, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17378227 17378228 rs6586496 0 + A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,genotype-conflict 717 chr1 17379028 17379029 rs2235928 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3686.000000,1322.000000,1322.000000,3686.000000, 0.368011,0.131989,0.131989,0.368011, maf-5-some-pop 717 chr1 17382305 17382306 rs2746460 0 - A A A/T genomic single unknown 0 0 near-gene-5 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 717 chr1 17382561 17382562 rs2647209 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4549.000000,459.000000,459.000000,4549.000000, 0.454173,0.045827,0.045827,0.454173, maf-5-some-pop 717 chr1 17382945 17382946 rs3754507 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1853.000000,3155.000000,3155.000000,1853.000000, 0.185004,0.314996,0.314996,0.185004, maf-5-some-pop,maf-5-all-pops 717 chr1 17386103 17386104 rs12404121 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SNP500CANCER,SSMP,TISHKOFF, 2 C,T, 2653.000000,2355.000000, 0.529752,0.470248, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17386879 17386880 rs2746543 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2955.000000,2053.000000,2053.000000,2955.000000, 0.295028,0.204972,0.204972,0.295028, maf-5-some-pop,maf-5-all-pops 717 chr1 17388567 17388568 rs2746542 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4812.000000,196.000000,196.000000,4812.000000, 0.480431,0.019569,0.019569,0.480431, maf-5-some-pop,genotype-conflict 717 chr1 17389579 17389580 rs11203290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop 717 chr1 17391000 17391001 rs2143811 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 699.000000,4309.000000,4309.000000,699.000000, 0.069788,0.430212,0.430212,0.069788, maf-5-some-pop 717 chr1 17392285 17392286 rs11203292 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,genotype-conflict 717 chr1 17392351 17392352 rs2746535 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 395.000000,4613.000000,4613.000000,395.000000, 0.039437,0.460563,0.460563,0.039437, maf-5-some-pop 717 chr1 17392979 17392980 rs12134582 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops 717 chr1 17394622 17394623 rs10157387 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 655.000000,4353.000000, 0.130791,0.869209, maf-5-some-pop 717 chr1 17394774 17394775 rs2235927 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WUGSC_SSAHASNP,YUSUKE, 4 A,C,G,T, 2142.000000,2866.000000,2866.000000,2142.000000, 0.213858,0.286142,0.286142,0.213858, maf-5-some-pop,maf-5-all-pops 717 chr1 17396407 17396408 rs6701620 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop 717 chr1 17396497 17396498 rs2076596 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2795.000000,2213.000000,2213.000000,2795.000000, 0.279054,0.220946,0.220946,0.279054, maf-5-some-pop,maf-5-all-pops 717 chr1 17396591 17396592 rs11581590 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 17 1000GENOMES,AFFY,APPLERA_GI,BCMHGSC_JDW,CANCER-GENOME,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 717 chr1 17396702 17396703 rs2076595 0 - T T A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2781.000000,2227.000000,2227.000000,2781.000000, 0.277656,0.222344,0.222344,0.277656, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17401093 17401094 rs2295053 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2637.000000,2371.000000,2371.000000,2637.000000, 0.263279,0.236721,0.236721,0.263279, maf-5-some-pop,maf-5-all-pops 717 chr1 17401693 17401694 rs11587313 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,genotype-conflict 717 chr1 17401739 17401740 rs3818040 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2373.000000,2635.000000,2635.000000,2373.000000, 0.236921,0.263079,0.263079,0.236921, maf-5-some-pop,maf-5-all-pops 717 chr1 17401814 17401815 rs3818037 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2372.000000,2636.000000,2636.000000,2372.000000, 0.236821,0.263179,0.263179,0.236821, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17402134 17402135 rs3818034 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2373.000000,2635.000000,2635.000000,2373.000000, 0.236921,0.263079,0.263079,0.236921, maf-5-some-pop,maf-5-all-pops 717 chr1 17404005 17404006 rs1980509 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2860.000000,2148.000000,2148.000000,2860.000000, 0.285543,0.214457,0.214457,0.285543, maf-5-some-pop,maf-5-all-pops 717 chr1 17404920 17404921 rs9435751 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop 717 chr1 17406014 17406015 rs2057093 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4574.000000,434.000000,434.000000,4574.000000, 0.456669,0.043331,0.043331,0.456669, maf-5-some-pop 717 chr1 17407322 17407323 rs2647190 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2496.000000,2512.000000,2512.000000,2496.000000, 0.249201,0.250799,0.250799,0.249201, maf-5-some-pop,maf-5-all-pops 717 chr1 17408212 17408213 rs2295050 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2466.000000,2542.000000,2542.000000,2466.000000, 0.246206,0.253794,0.253794,0.246206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17409016 17409017 rs2076617 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1980.000000,3028.000000,3028.000000,1980.000000, 0.197684,0.302316,0.302316,0.197684, maf-5-some-pop,maf-5-all-pops 717 chr1 17409240 17409241 rs2235925 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2394.000000,2614.000000,2614.000000,2394.000000, 0.239018,0.260982,0.260982,0.239018, maf-5-some-pop,maf-5-all-pops 717 chr1 17412500 17412501 rs2076616 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2634.000000,2374.000000,2374.000000,2634.000000, 0.262979,0.237021,0.237021,0.262979, maf-5-some-pop,maf-5-all-pops 717 chr1 17412769 17412770 rs2647185 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4902.000000,106.000000,106.000000,4902.000000, 0.489417,0.010583,0.010583,0.489417, maf-5-some-pop,genotype-conflict 717 chr1 17413768 17413769 rs733785 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2937.000000,2071.000000,2071.000000,2937.000000, 0.293231,0.206769,0.206769,0.293231, maf-5-some-pop,maf-5-all-pops 717 chr1 17420588 17420589 rs16862492 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 717 chr1 17422301 17422302 rs2076608 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2188.000000,2820.000000,2820.000000,2188.000000, 0.218450,0.281550,0.281550,0.218450, maf-5-some-pop,maf-5-all-pops 717 chr1 17422609 17422610 rs2235918 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2538.000000,2470.000000,2470.000000,2538.000000, 0.253395,0.246605,0.246605,0.253395, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17422659 17422660 rs2076607 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2820.000000,2188.000000,2188.000000,2820.000000, 0.281550,0.218450,0.218450,0.281550, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17423071 17423072 rs2746515 0 - T T A/C genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2188.000000,2820.000000,2820.000000,2188.000000, 0.218450,0.281550,0.281550,0.218450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17423549 17423550 rs932453 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 123.000000,4885.000000,4885.000000,123.000000, 0.012280,0.487720,0.487720,0.012280, maf-5-some-pop,genotype-conflict 717 chr1 17424844 17424845 rs2235914 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2522.000000,2486.000000,2486.000000,2522.000000, 0.251797,0.248203,0.248203,0.251797, maf-5-some-pop,maf-5-all-pops 717 chr1 17425066 17425067 rs2746506 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4731.000000,277.000000,277.000000,4731.000000, 0.472344,0.027656,0.027656,0.472344, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17425076 17425077 rs2235913 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2522.000000,2486.000000,2486.000000,2522.000000, 0.251797,0.248203,0.248203,0.251797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 717 chr1 17425618 17425619 rs2235911 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2203.000000,2805.000000,2805.000000,2203.000000, 0.219948,0.280052,0.280052,0.219948, maf-5-some-pop,maf-5-all-pops 717 chr1 17426761 17426762 rs2746505 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4884.000000,124.000000,124.000000,4884.000000, 0.487620,0.012380,0.012380,0.487620, maf-5-some-pop,genotype-conflict 717 chr1 17428217 17428218 rs2746502 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 124.000000,4884.000000,4884.000000,124.000000, 0.012380,0.487620,0.487620,0.012380, maf-5-some-pop,genotype-conflict 717 chr1 17428542 17428543 rs2746501 0 - C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 717 chr1 17429952 17429953 rs2018865 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 70.000000,4938.000000,4938.000000,70.000000, 0.006989,0.493011,0.493011,0.006989, maf-5-some-pop,genotype-conflict 717 chr1 17432398 17432399 rs878269 0 + C C C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 915.000000,4093.000000, 0.182708,0.817292, maf-5-some-pop 718 chr1 17437329 17437330 rs10788656 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3109.000000,1899.000000, 0.620807,0.379193, maf-5-some-pop,maf-5-all-pops,genotype-conflict 718 chr1 17437887 17437888 rs1883912 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 575.000000,4433.000000,4433.000000,575.000000, 0.057408,0.442592,0.442592,0.057408, maf-5-some-pop 718 chr1 17439194 17439195 rs1022579 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 902.000000,4106.000000,4106.000000,902.000000, 0.090056,0.409944,0.409944,0.090056, maf-5-some-pop,genotype-conflict 718 chr1 17440853 17440854 rs2143810 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1532.000000,3476.000000,3476.000000,1532.000000, 0.152955,0.347045,0.347045,0.152955, maf-5-some-pop 718 chr1 17456645 17456646 rs6701639 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 237.000000,4771.000000, 0.047324,0.952676, maf-5-some-pop 718 chr1 17464779 17464780 rs10788657 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2323.000000,2685.000000, 0.463858,0.536142, maf-5-some-pop,maf-5-all-pops 718 chr1 17465173 17465174 rs2746486 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2550.000000,2458.000000,2458.000000,2550.000000, 0.254593,0.245407,0.245407,0.254593, maf-5-some-pop,maf-5-all-pops 718 chr1 17465500 17465501 rs7530306 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3060.000000,1948.000000, 0.611022,0.388978, maf-5-some-pop,maf-5-all-pops,genotype-conflict 718 chr1 17466412 17466413 rs1883907 0 - A A A/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 718 chr1 17469691 17469692 rs2746479 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4395.000000,613.000000,613.000000,4395.000000, 0.438798,0.061202,0.061202,0.438798, maf-5-some-pop 718 chr1 17471570 17471571 rs2647151 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 718 chr1 17474393 17474394 rs6693480 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1620.000000,3388.000000, 0.323482,0.676518, maf-5-some-pop,maf-5-all-pops 718 chr1 17476830 17476831 rs12085482 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4597.000000,411.000000, 0.917931,0.082069, maf-5-some-pop,genotype-conflict 718 chr1 17481196 17481197 rs1883911 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 376.000000,4632.000000,4632.000000,376.000000, 0.037540,0.462460,0.462460,0.037540, maf-5-some-pop 718 chr1 17483951 17483952 rs2454155 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop 718 chr1 17485652 17485653 rs2454160 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1471.000000,3537.000000, 0.293730,0.706270, maf-5-some-pop,maf-5-all-pops 718 chr1 17485913 17485914 rs2454161 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3588.000000,1420.000000, 0.716454,0.283546, maf-5-some-pop,maf-5-all-pops 718 chr1 17485939 17485940 rs2454162 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3536.000000,1472.000000, 0.706070,0.293930, maf-5-some-pop,maf-5-all-pops 718 chr1 17486721 17486722 rs4620585 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2443.000000,2565.000000, 0.487819,0.512181, maf-5-some-pop,maf-5-all-pops 718 chr1 17487950 17487951 rs2454163 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 718 chr1 17488708 17488709 rs2454165 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 785.000000,4223.000000, 0.156749,0.843251, maf-5-some-pop 718 chr1 17488865 17488866 rs2454166 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 G,T, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop 718 chr1 17490831 17490832 rs2501810 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop 718 chr1 17491353 17491354 rs2454171 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1494.000000,3514.000000, 0.298323,0.701677, maf-5-some-pop,maf-5-all-pops 718 chr1 17498461 17498462 rs11203321 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 718 chr1 17500226 17500227 rs2935931 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3987.000000,1021.000000, 0.796126,0.203874, maf-5-some-pop 718 chr1 17501719 17501720 rs3003452 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1172.000000,3836.000000, 0.234026,0.765974, maf-5-some-pop 718 chr1 17507607 17507608 rs3003456 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1225.000000,3783.000000, 0.244609,0.755391, maf-5-some-pop,genotype-conflict 718 chr1 17509629 17509630 rs2935927 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1380.000000,3628.000000,3628.000000,1380.000000, 0.137780,0.362220,0.362220,0.137780, maf-5-some-pop,genotype-conflict 718 chr1 17509944 17509945 rs7532433 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 718 chr1 17511784 17511785 rs3003462 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3894.000000,1114.000000, 0.777556,0.222444, maf-5-some-pop,maf-5-all-pops 718 chr1 17514733 17514734 rs3003464 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3829.000000,1179.000000, 0.764577,0.235423, maf-5-some-pop,genotype-conflict 718 chr1 17518901 17518902 rs2501818 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1411.000000,3597.000000, 0.281749,0.718251, maf-5-some-pop 718 chr1 17519093 17519094 rs12124688 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 718 chr1 17519206 17519207 rs2454178 0 - G G A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1233.000000,3775.000000,3775.000000,1233.000000, 0.123103,0.376897,0.376897,0.123103, maf-5-some-pop 718 chr1 17520007 17520008 rs11203327 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1239.000000,3769.000000, 0.247404,0.752596, maf-5-some-pop 718 chr1 17520111 17520112 rs2501819 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop,genotype-conflict 718 chr1 17523597 17523598 rs2977257 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 C,G, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop,genotype-conflict 718 chr1 17525064 17525065 rs2977259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4257.000000,751.000000, 0.850040,0.149960, maf-5-some-pop 718 chr1 17526623 17526624 rs11583629 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop 718 chr1 17526653 17526654 rs3003474 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop 718 chr1 17529310 17529311 rs1015082 0 - A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 718 chr1 17531581 17531582 rs2293910 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop,genotype-conflict 718 chr1 17534309 17534310 rs4384275 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3681.000000,1327.000000, 0.735024,0.264976, maf-5-some-pop,maf-5-all-pops,genotype-conflict 718 chr1 17540694 17540695 rs6667138 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop 718 chr1 17541948 17541949 rs2977283 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3210.000000,1798.000000, 0.640974,0.359026, maf-5-some-pop,maf-5-all-pops 718 chr1 17542447 17542448 rs2977284 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop 718 chr1 17546589 17546590 rs11589046 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1470.000000,3538.000000, 0.293530,0.706470, maf-5-some-pop,genotype-conflict 718 chr1 17550120 17550121 rs2293912 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,CORNELL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,YUSUKE, 2 A,G, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop,genotype-conflict 718 chr1 17550313 17550314 rs2293914 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop,maf-5-all-pops 718 chr1 17550600 17550601 rs3003482 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 718 chr1 17551033 17551034 rs2293915 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,T, 2928.000000,2080.000000, 0.584665,0.415335, maf-5-some-pop,maf-5-all-pops 718 chr1 17552874 17552875 rs2977290 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop 718 chr1 17554852 17554853 rs10127662 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop 718 chr1 17557177 17557178 rs2977235 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop,maf-5-all-pops 718 chr1 17557656 17557657 rs3003408 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2161.000000,2847.000000, 0.431510,0.568490, maf-5-some-pop,maf-5-all-pops 718 chr1 17557836 17557837 rs3003409 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2842.000000,2166.000000, 0.567492,0.432508, maf-5-some-pop,maf-5-all-pops 718 chr1 17559195 17559196 rs4268393 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1577.000000,3431.000000, 0.314896,0.685104, maf-5-some-pop,maf-5-all-pops 718 chr1 17559598 17559599 rs3750295 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop,genotype-conflict 718 chr1 17559675 17559676 rs3750297 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1359.000000,3649.000000, 0.271366,0.728634, maf-5-some-pop,maf-5-all-pops 718 chr1 17560971 17560972 rs11203339 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2935.000000,2073.000000, 0.586062,0.413938, maf-5-some-pop 719 chr1 17564846 17564847 rs3003412 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4418.000000,590.000000, 0.882188,0.117812, maf-5-some-pop,maf-5-all-pops 719 chr1 17569948 17569949 rs2977313 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop 719 chr1 17570285 17570286 rs2977222 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 975.000000,873.000000, 0.527597,0.472403, maf-5-some-pop,maf-5-all-pops 719 chr1 17573987 17573988 rs3003419 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 636.000000,4372.000000, 0.126997,0.873003, maf-5-some-pop,genotype-conflict 719 chr1 17576327 17576328 rs2977227 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2572.000000,2436.000000, 0.513578,0.486422, maf-5-some-pop,maf-5-all-pops 719 chr1 17578364 17578365 rs4920579 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop 719 chr1 17578418 17578419 rs4920580 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4405.000000,603.000000, 0.879593,0.120407, maf-5-some-pop,genotype-conflict 719 chr1 17578552 17578553 rs9803868 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4405.000000,603.000000, 0.879593,0.120407, maf-5-some-pop 719 chr1 17582087 17582088 rs12070008 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop 719 chr1 17586133 17586134 rs3750300 0 + A A A/G genomic single unknown 0 0 missense exact 1 17 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4337.000000,671.000000, 0.866014,0.133986, maf-5-some-pop,genotype-conflict 719 chr1 17586652 17586653 rs4363467 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,maf-5-all-pops 719 chr1 17588161 17588162 rs3003426 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2211.000000,2797.000000, 0.441494,0.558506, maf-5-some-pop,maf-5-all-pops 719 chr1 17589047 17589048 rs3003427 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 506.000000,4502.000000, 0.101038,0.898962, maf-5-some-pop 719 chr1 17590521 17590522 rs2977268 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17590921 17590922 rs6682638 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 670.000000,4338.000000, 0.133786,0.866214, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17591076 17591077 rs2977269 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3626.000000,1382.000000, 0.724042,0.275958, maf-5-some-pop,maf-5-all-pops 719 chr1 17591678 17591679 rs3003429 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 C,T, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,microattr-tpa,genotype-conflict 719 chr1 17593315 17593316 rs2272629 0 + G G A/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop,genotype-conflict 719 chr1 17595701 17595702 rs17378462 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop,genotype-conflict 719 chr1 17595810 17595811 rs10888012 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,genotype-conflict 719 chr1 17595924 17595925 rs17458091 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop,genotype-conflict 719 chr1 17599443 17599444 rs2977293 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop,microattr-tpa 719 chr1 17600316 17600317 rs12037653 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2898.000000,2110.000000, 0.578674,0.421326, maf-5-some-pop,maf-5-all-pops 719 chr1 17600436 17600437 rs2977295 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3947.000000,1061.000000, 0.788139,0.211861, maf-5-some-pop,maf-5-all-pops 719 chr1 17604700 17604701 rs2977299 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2760.000000,2248.000000, 0.551118,0.448882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17609744 17609745 rs16824888 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop,genotype-conflict 719 chr1 17611287 17611288 rs10492990 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17611547 17611548 rs2977303 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 565.000000,4443.000000, 0.112819,0.887181, maf-5-some-pop,maf-5-all-pops 719 chr1 17619278 17619279 rs2501776 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1025.000000,3983.000000, 0.204673,0.795327, maf-5-some-pop 719 chr1 17622653 17622654 rs7548900 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1623.000000,3385.000000, 0.324081,0.675919, maf-5-some-pop,maf-5-all-pops 719 chr1 17622896 17622897 rs7542629 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 889.000000,4119.000000, 0.177516,0.822484, maf-5-some-pop,maf-5-all-pops 719 chr1 17629044 17629045 rs2477141 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2962.000000,2046.000000,2046.000000,2962.000000, 0.295727,0.204273,0.204273,0.295727, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17630304 17630305 rs2477138 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2917.000000,2091.000000,2091.000000,2917.000000, 0.291234,0.208766,0.208766,0.291234, maf-5-some-pop,maf-5-all-pops 719 chr1 17630604 17630605 rs2477137 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 992.000000,4016.000000,4016.000000,992.000000, 0.099042,0.400958,0.400958,0.099042, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17630963 17630964 rs4625336 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop,maf-5-all-pops 719 chr1 17631352 17631353 rs877551 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2025.000000,2983.000000,2983.000000,2025.000000, 0.202177,0.297823,0.297823,0.202177, maf-5-some-pop,maf-5-all-pops 719 chr1 17631651 17631652 rs11800688 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,KRIBB_YJKIM, 2 C,T, 4014.000000,994.000000, 0.801518,0.198482, maf-5-some-pop,maf-5-all-pops 719 chr1 17633245 17633246 rs11579504 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,maf-5-all-pops 719 chr1 17633498 17633499 rs2501795 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4417.000000,591.000000, 0.881989,0.118011, maf-5-some-pop 719 chr1 17633521 17633522 rs2501796 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4447.000000,561.000000, 0.887979,0.112021, maf-5-some-pop,genotype-conflict 719 chr1 17633571 17633572 rs2477134 0 - G G A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3304.000000,1704.000000,1704.000000,3304.000000, 0.329872,0.170128,0.170128,0.329872, maf-5-some-pop,maf-5-all-pops 719 chr1 17635236 17635237 rs2501800 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop 719 chr1 17635395 17635396 rs1886302 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3121.000000,1887.000000,1887.000000,3121.000000, 0.311601,0.188399,0.188399,0.311601, maf-5-some-pop 719 chr1 17635410 17635411 rs1886301 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2080.000000,2928.000000,2928.000000,2080.000000, 0.207668,0.292332,0.292332,0.207668, maf-5-some-pop,maf-5-all-pops 719 chr1 17646525 17646526 rs2147333 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4655.000000,353.000000,353.000000,4655.000000, 0.464756,0.035244,0.035244,0.464756, maf-5-some-pop,genotype-conflict 719 chr1 17655406 17655407 rs1748041 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3101.000000,1907.000000,1907.000000,3101.000000, 0.309605,0.190395,0.190395,0.309605, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17655667 17655668 rs1957881 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2336.000000,2672.000000,2672.000000,2336.000000, 0.233227,0.266773,0.266773,0.233227, maf-5-some-pop,maf-5-all-pops 719 chr1 17657063 17657064 rs1359303 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2671.000000,2337.000000,2337.000000,2671.000000, 0.266673,0.233327,0.233327,0.266673, maf-5-some-pop,maf-5-all-pops 719 chr1 17657615 17657616 rs11203367 0 + T T C/T genomic single unknown 0 0 missense exact 1 28 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 2671.000000,2337.000000, 0.533347,0.466653, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17659555 17659556 rs1635597 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1964.000000,3044.000000,3044.000000,1964.000000, 0.196086,0.303914,0.303914,0.196086, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17661804 17661805 rs1635594 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1855.000000,3153.000000,3153.000000,1855.000000, 0.185204,0.314796,0.314796,0.185204, maf-5-some-pop,maf-5-all-pops 719 chr1 17661995 17661996 rs1748035 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1982.000000,3026.000000,3026.000000,1982.000000, 0.197883,0.302117,0.302117,0.197883, maf-5-some-pop,maf-5-all-pops 719 chr1 17665684 17665685 rs942460 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 719 chr1 17665880 17665881 rs16825533 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop 719 chr1 17666507 17666508 rs11203368 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2317.000000,2691.000000, 0.462660,0.537340, maf-5-some-pop,maf-5-all-pops 719 chr1 17666583 17666584 rs1748023 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,KRIBB_YJKIM,SC_JCM,SC_SNP, 4 A,C,G,T, 4904.000000,104.000000,104.000000,4904.000000, 0.489617,0.010383,0.010383,0.489617, maf-5-some-pop 719 chr1 17669910 17669911 rs6662651 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop 719 chr1 17674536 17674537 rs2240335 0 - C C G/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2110.000000,2898.000000,2898.000000,2110.000000, 0.210663,0.289337,0.289337,0.210663, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 719 chr1 17674820 17674821 rs12746451 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 719 chr1 17675120 17675121 rs12754590 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSAHASNP, 2 A,C, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 719 chr1 17675649 17675650 rs1748015 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4616.000000,392.000000,392.000000,4616.000000, 0.460863,0.039137,0.039137,0.460863, maf-5-some-pop,genotype-conflict 719 chr1 17675888 17675889 rs1613767 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 357.000000,4651.000000,4651.000000,357.000000, 0.035643,0.464357,0.464357,0.035643, maf-5-some-pop 719 chr1 17681276 17681277 rs6683201 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3883.000000,1125.000000, 0.775359,0.224641, maf-5-some-pop 719 chr1 17682214 17682215 rs16825849 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop 719 chr1 17686819 17686820 rs1635562 0 - T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 719 chr1 17687026 17687027 rs1635561 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1146.000000,3862.000000,3862.000000,1146.000000, 0.114417,0.385583,0.385583,0.114417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17690914 17690915 rs1408422 0 - T T A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4794.000000,214.000000,214.000000,4794.000000, 0.478634,0.021366,0.021366,0.478634, maf-5-some-pop 719 chr1 17691726 17691727 rs12096509 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop 719 chr1 17691982 17691983 rs7538597 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,genotype-conflict 719 chr1 17694614 17694615 rs1204891 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 848.000000,4160.000000,4160.000000,848.000000, 0.084665,0.415335,0.415335,0.084665, maf-5-some-pop,maf-5-all-pops,genotype-conflict 719 chr1 17694700 17694701 rs1204890 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3554.000000,1454.000000,1454.000000,3554.000000, 0.354832,0.145168,0.145168,0.354832, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17699233 17699234 rs1204871 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 720 chr1 17699336 17699337 rs942459 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 224.000000,4784.000000,4784.000000,224.000000, 0.022364,0.477636,0.477636,0.022364, maf-5-some-pop,genotype-conflict 720 chr1 17699462 17699463 rs1204869 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1315.000000,3693.000000,3693.000000,1315.000000, 0.131290,0.368710,0.368710,0.131290, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17703860 17703861 rs12563231 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop,genotype-conflict 720 chr1 17707738 17707739 rs1204898 0 - T T A/G genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1401.000000,3607.000000,3607.000000,1401.000000, 0.139876,0.360124,0.360124,0.139876, maf-5-some-pop,maf-5-all-pops 720 chr1 17707797 17707798 rs10788668 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1693.000000,3315.000000, 0.338059,0.661941, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17716393 17716394 rs2762896 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3397.000000,1611.000000, 0.678315,0.321685, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17719004 17719005 rs2800691 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3422.000000,1586.000000, 0.683307,0.316693, maf-5-some-pop,maf-5-all-pops 720 chr1 17720544 17720545 rs12073549 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop 720 chr1 17723125 17723126 rs2526833 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF, 4 A,C,G,T, 1828.000000,3180.000000,3180.000000,1828.000000, 0.182508,0.317492,0.317492,0.182508, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17727378 17727379 rs4920603 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1596.000000,3412.000000, 0.318690,0.681310, maf-5-some-pop,maf-5-all-pops 720 chr1 17733563 17733564 rs7191 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3180.000000,1828.000000, 0.634984,0.365016, maf-5-some-pop,maf-5-all-pops 720 chr1 17733995 17733996 rs3193024 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SEQUENOM,SSMP,YUSUKE, 2 A,G, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop 720 chr1 17739312 17739313 rs942458 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1905.000000,3103.000000,3103.000000,1905.000000, 0.190196,0.309804,0.309804,0.190196, maf-5-some-pop,maf-5-all-pops 720 chr1 17746032 17746033 rs12089849 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,C, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,genotype-conflict 720 chr1 17748026 17748027 rs1535874 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1788.000000,3220.000000,3220.000000,1788.000000, 0.178514,0.321486,0.321486,0.178514, maf-5-some-pop,maf-5-all-pops 720 chr1 17749503 17749504 rs730153 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1645.000000,3363.000000, 0.328474,0.671526, maf-5-some-pop,maf-5-all-pops 720 chr1 17750262 17750263 rs12728891 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,SSAHASNP, 2 C,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop 720 chr1 17754766 17754767 rs1408421 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1752.000000,3256.000000,3256.000000,1752.000000, 0.174920,0.325080,0.325080,0.174920, maf-5-some-pop,maf-5-all-pops 720 chr1 17754814 17754815 rs1408420 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1884.000000,3124.000000,3124.000000,1884.000000, 0.188099,0.311901,0.311901,0.188099, maf-5-some-pop,maf-5-all-pops 720 chr1 17755414 17755415 rs11577108 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,C, 41.000000,4967.000000, 0.008187,0.991813, 720 chr1 17763311 17763312 rs2800686 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1762.000000,3246.000000, 0.351837,0.648163, maf-5-some-pop,maf-5-all-pops 720 chr1 17763565 17763566 rs6586542 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1894.000000,3114.000000, 0.378195,0.621805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17781263 17781264 rs2996655 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3014.000000,1994.000000, 0.601837,0.398163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 720 chr1 17785735 17785736 rs2428740 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1766.000000,3242.000000,3242.000000,1766.000000, 0.176318,0.323682,0.323682,0.176318, maf-5-some-pop,maf-5-all-pops 720 chr1 17790243 17790244 rs4920371 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop 720 chr1 17794204 17794205 rs4920609 0 + C C A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,T, 3191.000000,1815.000000,2.000000, 0.637181,0.362420,0.000399, maf-5-some-pop,maf-5-all-pops 720 chr1 17808109 17808110 rs6671376 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 720 chr1 17819075 17819076 rs2353610 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop 721 chr1 17829955 17829956 rs11203414 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1243.000000,3765.000000, 0.248203,0.751797, maf-5-some-pop 721 chr1 17833144 17833145 rs2985872 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop,genotype-conflict 721 chr1 17836694 17836695 rs12061392 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop 721 chr1 17837604 17837605 rs11203417 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 721 chr1 17838287 17838288 rs7554933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop 721 chr1 17843168 17843169 rs2243430 0 + G G G/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2041.000000,2967.000000, 0.407548,0.592452, maf-5-some-pop 721 chr1 17846921 17846922 rs2244444 0 + C C C/T genomic single unknown 0 0 untranslated-5 exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2059.000000,2949.000000, 0.411142,0.588858, maf-5-some-pop,maf-5-all-pops,genotype-conflict 721 chr1 17855823 17855824 rs2248129 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 721 chr1 17857600 17857601 rs2244300 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2432.000000,2576.000000,2576.000000,2432.000000, 0.242812,0.257188,0.257188,0.242812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 721 chr1 17858534 17858535 rs2244432 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop 721 chr1 17868958 17868959 rs2477734 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop,genotype-conflict 721 chr1 17872027 17872028 rs4920374 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2750.000000,2258.000000, 0.549121,0.450879, maf-5-some-pop,maf-5-all-pops 721 chr1 17872109 17872110 rs2248697 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 721 chr1 17872658 17872659 rs2248713 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4703.000000,305.000000, 0.939097,0.060903, maf-5-some-pop 721 chr1 17872808 17872809 rs12093896 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 721 chr1 17877489 17877490 rs41530444 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop 721 chr1 17878618 17878619 rs1408953 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2852.000000,2156.000000,2156.000000,2852.000000, 0.284744,0.215256,0.215256,0.284744, maf-5-some-pop,maf-5-all-pops 721 chr1 17884356 17884357 rs17427202 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 430.000000,4578.000000, 0.085863,0.914137, maf-5-some-pop 721 chr1 17890573 17890574 rs2256500 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop 721 chr1 17892815 17892816 rs2256787 0 + A A A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 506.000000,4502.000000, 0.101038,0.898962, maf-5-some-pop 721 chr1 17895211 17895212 rs2257121 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 721 chr1 17903297 17903298 rs6702679 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops,genotype-conflict 721 chr1 17905189 17905190 rs12066034 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4322.000000,686.000000, 0.863019,0.136981, maf-5-some-pop 721 chr1 17908176 17908177 rs12026569 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4390.000000,618.000000, 0.876597,0.123403, maf-5-some-pop 721 chr1 17916918 17916919 rs10788678 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3352.000000,1656.000000, 0.669329,0.330671, maf-5-some-pop,maf-5-all-pops 721 chr1 17916961 17916962 rs10788679 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1535.000000,3473.000000, 0.306510,0.693490, maf-5-some-pop,maf-5-all-pops 721 chr1 17918599 17918600 rs4920380 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1923.000000,3085.000000, 0.383986,0.616014, maf-5-some-pop,maf-5-all-pops 721 chr1 17919206 17919207 rs1193341 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4759.000000,249.000000,249.000000,4759.000000, 0.475140,0.024860,0.024860,0.475140, maf-5-some-pop 721 chr1 17919235 17919236 rs1193340 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 312.000000,4696.000000,4696.000000,312.000000, 0.031150,0.468850,0.468850,0.031150, maf-5-some-pop 721 chr1 17919816 17919817 rs6693036 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop,microattr-tpa 721 chr1 17920154 17920155 rs1193339 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3954.000000,1054.000000,1054.000000,3954.000000, 0.394768,0.105232,0.105232,0.394768, maf-5-some-pop 721 chr1 17932066 17932067 rs10492992 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 721 chr1 17937552 17937553 rs12083884 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 721 chr1 17937996 17937997 rs17468149 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 721 chr1 17954485 17954486 rs12059707 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop,maf-5-all-pops 722 chr1 17962995 17962996 rs3753377 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1181.000000,3827.000000, 0.235823,0.764177, maf-5-some-pop,maf-5-all-pops,genotype-conflict 722 chr1 17967043 17967044 rs11800478 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 722 chr1 17976559 17976560 rs6703771 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3648.000000,1360.000000, 0.728435,0.271565, maf-5-some-pop 722 chr1 17977377 17977378 rs3766309 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4064.000000,944.000000, 0.811502,0.188498, maf-5-some-pop,maf-5-all-pops 722 chr1 17981912 17981913 rs11580813 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop 722 chr1 17985108 17985109 rs1109875 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4593.000000,415.000000,415.000000,4593.000000, 0.458566,0.041434,0.041434,0.458566, maf-5-some-pop,genotype-conflict 722 chr1 17989764 17989765 rs12067869 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,maf-5-all-pops 722 chr1 17998776 17998777 rs12565468 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop 722 chr1 17998919 17998920 rs17469160 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 408.000000,4600.000000, 0.081470,0.918530, maf-5-some-pop,genotype-conflict 722 chr1 18000612 18000613 rs869526 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 4 A,C,G,T, 117.000000,4891.000000,4891.000000,117.000000, 0.011681,0.488319,0.488319,0.011681, maf-5-some-pop 722 chr1 18000626 18000627 rs6657353 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4482.000000,526.000000, 0.894968,0.105032, maf-5-some-pop 722 chr1 18003945 18003946 rs6665721 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 722 chr1 18005222 18005223 rs7528550 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop 722 chr1 18005378 18005379 rs7531556 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,genotype-conflict 722 chr1 18014419 18014420 rs12091439 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop 722 chr1 18018856 18018857 rs12143113 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop,maf-5-all-pops 722 chr1 18019956 18019957 rs2134482 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 620.000000,4388.000000,4388.000000,620.000000, 0.061901,0.438099,0.438099,0.061901, maf-5-some-pop,maf-5-all-pops 722 chr1 18020200 18020201 rs1339800 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop,maf-5-all-pops 722 chr1 18020297 18020298 rs1339801 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop,maf-5-all-pops 722 chr1 18026003 18026004 rs12749985 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1071.000000,3937.000000, 0.213858,0.786142, maf-5-some-pop,maf-5-all-pops,genotype-conflict 722 chr1 18027553 18027554 rs2354291 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1081.000000,3927.000000, 0.215855,0.784145, maf-5-some-pop,maf-5-all-pops,genotype-conflict 722 chr1 18031532 18031533 rs12063085 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 775.000000,4233.000000, 0.154752,0.845248, maf-5-some-pop,genotype-conflict 722 chr1 18041526 18041527 rs11203446 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 722 chr1 18041694 18041695 rs11203447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop 722 chr1 18042034 18042035 rs1553400 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3809.000000,1199.000000, 0.760583,0.239417, maf-5-some-pop,maf-5-all-pops,microattr-tpa 722 chr1 18046286 18046287 rs4920626 0 + G G G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2006.000000,3002.000000, 0.400559,0.599441, maf-5-some-pop,maf-5-all-pops 722 chr1 18047392 18047393 rs4920627 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,genotype-conflict 722 chr1 18050437 18050438 rs6675004 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4668.000000,340.000000, 0.932109,0.067891, maf-5-some-pop 722 chr1 18056516 18056517 rs1890744 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,genotype-conflict 722 chr1 18057711 18057712 rs7546135 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3318.000000,1690.000000, 0.662540,0.337460, maf-5-some-pop,maf-5-all-pops 722 chr1 18059243 18059244 rs7512028 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,genotype-conflict 722 chr1 18060435 18060436 rs11584168 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop,maf-5-all-pops 722 chr1 18062257 18062258 rs6586573 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1785.000000,3223.000000, 0.356430,0.643570, maf-5-some-pop,maf-5-all-pops 722 chr1 18070407 18070408 rs4920628 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1698.000000,3310.000000, 0.339058,0.660942, maf-5-some-pop,maf-5-all-pops 722 chr1 18073504 18073505 rs1033846 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3106.000000,1902.000000,1902.000000,3106.000000, 0.310104,0.189896,0.189896,0.310104, maf-5-some-pop,maf-5-all-pops,genotype-conflict 722 chr1 18074341 18074342 rs4920630 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop,maf-5-all-pops,genotype-conflict 722 chr1 18079811 18079812 rs12136469 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3851.000000,1157.000000, 0.768970,0.231030, maf-5-some-pop,maf-5-all-pops 722 chr1 18083430 18083431 rs11810020 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop 722 chr1 18084289 18084290 rs1610410 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1662.000000,3346.000000, 0.331869,0.668131, maf-5-some-pop,maf-5-all-pops 723 chr1 18087992 18087993 rs6676457 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop,maf-5-all-pops 723 chr1 18088937 18088938 rs12086420 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 723 chr1 18090928 18090929 rs7547331 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2191.000000,2817.000000, 0.437500,0.562500, maf-5-some-pop,maf-5-all-pops 723 chr1 18090974 18090975 rs16830722 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 563.000000,4445.000000, 0.112420,0.887580, maf-5-some-pop,genotype-conflict 723 chr1 18091301 18091302 rs16830724 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4146.000000,862.000000, 0.827875,0.172125, maf-5-some-pop 723 chr1 18092287 18092288 rs6690507 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4021.000000,987.000000, 0.802915,0.197085, maf-5-some-pop,genotype-conflict 723 chr1 18092614 18092615 rs4920381 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2465.000000,2543.000000, 0.492212,0.507788, maf-5-some-pop,maf-5-all-pops 723 chr1 18098552 18098553 rs1977251 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 952.000000,4056.000000, 0.190096,0.809904, maf-5-some-pop 723 chr1 18110700 18110701 rs260519 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2507.000000,2501.000000, 0.500599,0.499401, maf-5-some-pop,maf-5-all-pops 723 chr1 18111954 18111955 rs1578214 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4252.000000,756.000000, 0.849042,0.150958, maf-5-some-pop,maf-5-all-pops 723 chr1 18112064 18112065 rs1599970 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 496.000000,4512.000000,4512.000000,496.000000, 0.049521,0.450479,0.450479,0.049521, maf-5-some-pop 723 chr1 18123331 18123332 rs4920385 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3628.000000,1380.000000, 0.724441,0.275559, maf-5-some-pop,maf-5-all-pops 723 chr1 18123460 18123461 rs4920386 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2631.000000,2377.000000, 0.525359,0.474641, maf-5-some-pop,maf-5-all-pops 723 chr1 18123956 18123957 rs1847235 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3595.000000,1413.000000, 0.717851,0.282149, maf-5-some-pop,maf-5-all-pops 723 chr1 18124293 18124294 rs4920387 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3838.000000,1170.000000, 0.766374,0.233626, maf-5-some-pop,maf-5-all-pops 723 chr1 18124415 18124416 rs4920641 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1407.000000,3601.000000, 0.280950,0.719050, maf-5-some-pop,maf-5-all-pops 723 chr1 18124526 18124527 rs16830757 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4338.000000,670.000000, 0.866214,0.133786, maf-5-some-pop 723 chr1 18125528 18125529 rs7553237 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop,genotype-conflict 723 chr1 18132268 18132269 rs500035 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 425.000000,4583.000000,4583.000000,425.000000, 0.042432,0.457568,0.457568,0.042432, maf-5-some-pop 723 chr1 18132600 18132601 rs560514 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2219.000000,2789.000000,2789.000000,2219.000000, 0.221546,0.278454,0.278454,0.221546, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18138176 18138177 rs480231 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2282.000000,2726.000000,2726.000000,2282.000000, 0.227835,0.272165,0.272165,0.227835, maf-5-some-pop,maf-5-all-pops 723 chr1 18141452 18141453 rs604800 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1526.000000,3482.000000,3482.000000,1526.000000, 0.152356,0.347644,0.347644,0.152356, maf-5-some-pop,maf-5-all-pops 723 chr1 18143673 18143674 rs508571 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1545.000000,3463.000000,3463.000000,1545.000000, 0.154253,0.345747,0.345747,0.154253, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18143742 18143743 rs11810763 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 723 chr1 18144013 18144014 rs505094 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2341.000000,2667.000000,2667.000000,2341.000000, 0.233726,0.266274,0.266274,0.233726, maf-5-some-pop,maf-5-all-pops 723 chr1 18144702 18144703 rs6674185 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 723 chr1 18148783 18148784 rs6679624 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,KRIBB_YJKIM, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 723 chr1 18149565 18149566 rs2296035 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,C, 2418.000000,2590.000000, 0.482827,0.517173, maf-5-some-pop,maf-5-all-pops 723 chr1 18151846 18151847 rs485291 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2575.000000,2433.000000,2433.000000,2575.000000, 0.257089,0.242911,0.242911,0.257089, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18156863 18156864 rs1890788 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4101.000000,907.000000, 0.818890,0.181110, maf-5-some-pop,genotype-conflict 723 chr1 18157848 18157849 rs472480 0 - G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 723 chr1 18158155 18158156 rs7545559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop,maf-5-all-pops 723 chr1 18158326 18158327 rs11203470 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop 723 chr1 18159494 18159495 rs685987 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1444.000000,3564.000000,3564.000000,1444.000000, 0.144169,0.355831,0.355831,0.144169, maf-5-some-pop,maf-5-all-pops 723 chr1 18159532 18159533 rs708090 0 + C C A/C genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 723 chr1 18160132 18160133 rs683259 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3791.000000,1217.000000,1217.000000,3791.000000, 0.378494,0.121506,0.121506,0.378494, maf-5-some-pop,maf-5-all-pops 723 chr1 18162911 18162912 rs11203475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1140.000000,3868.000000, 0.227636,0.772364, maf-5-some-pop 723 chr1 18163921 18163922 rs495347 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2476.000000,2532.000000,2532.000000,2476.000000, 0.247204,0.252796,0.252796,0.247204, maf-5-some-pop,maf-5-all-pops 723 chr1 18165169 18165170 rs573493 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2472.000000,2536.000000,2536.000000,2472.000000, 0.246805,0.253195,0.253195,0.246805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18169073 18169074 rs11203477 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,genotype-conflict 723 chr1 18170194 18170195 rs708092 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3147.000000,1861.000000, 0.628395,0.371605, maf-5-some-pop,maf-5-all-pops 723 chr1 18171346 18171347 rs807455 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2936.000000,2072.000000, 0.586262,0.413738, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18176172 18176173 rs11203219 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,T, 4322.000000,686.000000, 0.863019,0.136981, maf-5-some-pop,genotype-conflict 723 chr1 18177470 18177471 rs576091 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2536.000000,2472.000000,2472.000000,2536.000000, 0.253195,0.246805,0.246805,0.253195, maf-5-some-pop,maf-5-all-pops 723 chr1 18179275 18179276 rs696324 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18193603 18193604 rs587276 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2445.000000,2563.000000, 0.488219,0.511781, maf-5-some-pop,maf-5-all-pops 723 chr1 18196799 18196800 rs11203223 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1163.000000,3845.000000, 0.232228,0.767772, maf-5-some-pop,maf-5-all-pops 723 chr1 18201317 18201318 rs563835 0 + T T C/T genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2445.000000,2563.000000, 0.488219,0.511781, maf-5-some-pop,maf-5-all-pops,genotype-conflict 723 chr1 18201632 18201633 rs11203224 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop,maf-5-all-pops 723 chr1 18202180 18202181 rs7538231 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 1105.000000,3903.000000, 0.220647,0.779353, maf-5-some-pop,maf-5-all-pops 723 chr1 18203379 18203380 rs578987 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1191.000000,3817.000000, 0.237819,0.762181, maf-5-some-pop,maf-5-all-pops 723 chr1 18204831 18204832 rs622689 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1393.000000,3615.000000,3615.000000,1393.000000, 0.139077,0.360923,0.360923,0.139077, maf-5-some-pop,maf-5-all-pops 723 chr1 18204906 18204907 rs622590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop 723 chr1 18209808 18209809 rs10082297 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,genotype-conflict 723 chr1 18210027 18210028 rs638425 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 4 A,C,G,T, 433.000000,4575.000000,4575.000000,433.000000, 0.043231,0.456769,0.456769,0.043231, maf-5-some-pop 723 chr1 18212229 18212230 rs597865 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3771.000000,1237.000000, 0.752995,0.247005, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18220514 18220515 rs16861167 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop 724 chr1 18220785 18220786 rs678648 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3507.000000,1501.000000, 0.700280,0.299720, maf-5-some-pop,maf-5-all-pops 724 chr1 18221882 18221883 rs566599 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1445.000000,3563.000000, 0.288538,0.711462, maf-5-some-pop,maf-5-all-pops 724 chr1 18227959 18227960 rs1578238 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3983.000000,1025.000000, 0.795327,0.204673, maf-5-some-pop 724 chr1 18228860 18228861 rs679002 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3857.000000,1151.000000,1151.000000,3857.000000, 0.385084,0.114916,0.114916,0.385084, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18230534 18230535 rs510896 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3852.000000,1156.000000,1156.000000,3852.000000, 0.384585,0.115415,0.115415,0.384585, maf-5-some-pop 724 chr1 18233158 18233159 rs11580247 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 724 chr1 18236618 18236619 rs7524159 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3828.000000,1180.000000, 0.764377,0.235623, maf-5-some-pop 724 chr1 18239045 18239046 rs11804576 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1813.000000,3195.000000, 0.362021,0.637979, maf-5-some-pop,maf-5-all-pops 724 chr1 18240696 18240697 rs11203233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3938.000000,1070.000000, 0.786342,0.213658, maf-5-some-pop,maf-5-all-pops 724 chr1 18240898 18240899 rs2152390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2999.000000,2009.000000, 0.598842,0.401158, maf-5-some-pop,maf-5-all-pops 724 chr1 18241270 18241271 rs946737 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 724 chr1 18241308 18241309 rs12087706 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop 724 chr1 18242865 18242866 rs7545682 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3523.000000,1485.000000, 0.703474,0.296526, maf-5-some-pop,maf-5-all-pops 724 chr1 18243979 18243980 rs12133875 0 + G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 3 A,G,T, 60.000000,3465.000000,1483.000000, 0.011981,0.691893,0.296126, maf-5-some-pop,maf-5-all-pops 724 chr1 18244706 18244707 rs6686929 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2370.000000,2638.000000, 0.473243,0.526757, maf-5-some-pop,maf-5-all-pops,microattr-tpa 724 chr1 18246139 18246140 rs12073092 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 724 chr1 18249639 18249640 rs1537773 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 2 C,T, 3541.000000,1467.000000, 0.707069,0.292931, maf-5-some-pop,maf-5-all-pops 724 chr1 18249742 18249743 rs12092756 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,maf-5-all-pops 724 chr1 18251381 18251382 rs11584748 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 538.000000,4470.000000, 0.107428,0.892572, maf-5-some-pop 724 chr1 18253444 18253445 rs12408440 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 538.000000,4470.000000, 0.107428,0.892572, maf-5-some-pop 724 chr1 18253742 18253743 rs883136 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3016.000000,1992.000000, 0.602236,0.397764, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18256099 18256100 rs1416950 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 728.000000,4280.000000,4280.000000,728.000000, 0.072684,0.427316,0.427316,0.072684, maf-5-some-pop 724 chr1 18257177 18257178 rs4920397 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,G, 1466.000000,3542.000000, 0.292732,0.707268, maf-5-some-pop,maf-5-all-pops 724 chr1 18259242 18259243 rs642351 0 + A A A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1270.000000,3738.000000, 0.253594,0.746406, maf-5-some-pop,genotype-conflict 724 chr1 18263509 18263510 rs12089039 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3724.000000,1284.000000, 0.743610,0.256390, maf-5-some-pop 724 chr1 18264737 18264738 rs594011 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18265973 18265974 rs620950 0 - C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 724 chr1 18268404 18268405 rs652234 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3253.000000,1755.000000, 0.649561,0.350439, maf-5-some-pop 724 chr1 18268686 18268687 rs653561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2287.000000,2721.000000, 0.456669,0.543331, maf-5-some-pop,genotype-conflict 724 chr1 18269272 18269273 rs666394 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4092.000000,916.000000, 0.817093,0.182907, maf-5-some-pop,genotype-conflict 724 chr1 18270882 18270883 rs619345 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1304.000000,3704.000000, 0.260383,0.739617, maf-5-some-pop,maf-5-all-pops 724 chr1 18271362 18271363 rs1572345 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3707.000000,1301.000000, 0.740216,0.259784, maf-5-some-pop,genotype-conflict 724 chr1 18271747 18271748 rs1150903 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3642.000000,1366.000000,1366.000000,3642.000000, 0.363618,0.136382,0.136382,0.363618, maf-5-some-pop,maf-5-all-pops 724 chr1 18273841 18273842 rs7551015 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2971.000000,2037.000000, 0.593251,0.406749, maf-5-some-pop,maf-5-all-pops 724 chr1 18274303 18274304 rs10127575 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop,maf-5-all-pops 724 chr1 18274418 18274419 rs11203243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1408.000000,3600.000000, 0.281150,0.718850, maf-5-some-pop 724 chr1 18274897 18274898 rs1192586 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2709.000000,2299.000000,2299.000000,2709.000000, 0.270467,0.229533,0.229533,0.270467, maf-5-some-pop,maf-5-all-pops 724 chr1 18278256 18278257 rs673567 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2765.000000,2243.000000, 0.552117,0.447883, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18278421 18278422 rs12408792 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop 724 chr1 18281917 18281918 rs4920399 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 777.000000,4231.000000, 0.155152,0.844848, maf-5-some-pop,maf-5-all-pops 724 chr1 18282094 18282095 rs1192583 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4620.000000,388.000000,388.000000,4620.000000, 0.461262,0.038738,0.038738,0.461262, maf-5-some-pop 724 chr1 18284806 18284807 rs1192577 0 - G G C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 724 chr1 18286067 18286068 rs1192573 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4421.000000,587.000000,587.000000,4421.000000, 0.441394,0.058606,0.058606,0.441394, maf-5-some-pop,genotype-conflict 724 chr1 18286999 18287000 rs1192570 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4546.000000,462.000000,462.000000,4546.000000, 0.453874,0.046126,0.046126,0.453874, maf-5-some-pop 724 chr1 18289232 18289233 rs794229 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1061.000000,3947.000000,3947.000000,1061.000000, 0.105931,0.394069,0.394069,0.105931, maf-5-some-pop,maf-5-all-pops 724 chr1 18289251 18289252 rs794230 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 606.000000,4402.000000,4402.000000,606.000000, 0.060503,0.439497,0.439497,0.060503, maf-5-some-pop,microattr-tpa 724 chr1 18289480 18289481 rs4920402 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 788.000000,4220.000000, 0.157348,0.842652, maf-5-some-pop,maf-5-all-pops 724 chr1 18290340 18290341 rs794232 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 606.000000,4402.000000,4402.000000,606.000000, 0.060503,0.439497,0.439497,0.060503, maf-5-some-pop 724 chr1 18291013 18291014 rs3128752 0 + G G G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 724 chr1 18292800 18292801 rs1192559 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4480.000000,528.000000,528.000000,4480.000000, 0.447284,0.052716,0.052716,0.447284, maf-5-some-pop,genotype-conflict 724 chr1 18293126 18293127 rs1192558 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4480.000000,528.000000,528.000000,4480.000000, 0.447284,0.052716,0.052716,0.447284, maf-5-some-pop 724 chr1 18293454 18293455 rs1192556 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 724 chr1 18293847 18293848 rs4920403 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop,maf-5-all-pops 724 chr1 18294486 18294487 rs16861326 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EXOME_CHIP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 724 chr1 18297406 18297407 rs2095842 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4264.000000,744.000000,744.000000,4264.000000, 0.425719,0.074281,0.074281,0.425719, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18297687 18297688 rs871644 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 723.000000,4285.000000,4285.000000,723.000000, 0.072185,0.427815,0.427815,0.072185, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18298171 18298172 rs12076050 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 724 chr1 18300252 18300253 rs1192549 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1042.000000,3966.000000,3966.000000,1042.000000, 0.104034,0.395966,0.395966,0.104034, maf-5-some-pop,maf-5-all-pops 724 chr1 18305634 18305635 rs1192628 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 616.000000,4392.000000,4392.000000,616.000000, 0.061502,0.438498,0.438498,0.061502, maf-5-some-pop 724 chr1 18308054 18308055 rs17471689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 976.000000,4032.000000, 0.194888,0.805112, maf-5-some-pop,genotype-conflict 724 chr1 18308282 18308283 rs12082978 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop 724 chr1 18311068 18311069 rs16861364 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4080.000000,928.000000, 0.814696,0.185304, maf-5-some-pop 724 chr1 18311139 18311140 rs6685120 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop 724 chr1 18314620 18314621 rs11588830 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4103.000000,905.000000, 0.819289,0.180711, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18317077 18317078 rs4378244 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4574.000000,434.000000, 0.913339,0.086661, maf-5-some-pop 724 chr1 18317840 18317841 rs12726822 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 968.000000,4040.000000, 0.193291,0.806709, maf-5-some-pop 724 chr1 18318878 18318879 rs1769845 0 - A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 724 chr1 18319020 18319021 rs1339932 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 807.000000,4201.000000,4201.000000,807.000000, 0.080571,0.419429,0.419429,0.080571, maf-5-some-pop 724 chr1 18323909 18323910 rs11203252 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2999.000000,2009.000000, 0.598842,0.401158, maf-5-some-pop,maf-5-all-pops 724 chr1 18324557 18324558 rs16861382 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, maf-5-some-pop 724 chr1 18325256 18325257 rs12022529 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4080.000000,928.000000, 0.814696,0.185304, maf-5-some-pop 724 chr1 18326622 18326623 rs11203254 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 672.000000,4336.000000, 0.134185,0.865815, maf-5-some-pop 724 chr1 18329047 18329048 rs1769847 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1947.000000,3061.000000,3061.000000,1947.000000, 0.194389,0.305611,0.305611,0.194389, maf-5-some-pop,maf-5-all-pops 724 chr1 18330168 18330169 rs16861391 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,genotype-conflict 724 chr1 18332919 18332920 rs16861403 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 724 chr1 18333113 18333114 rs10887978 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops,genotype-conflict 724 chr1 18333980 18333981 rs16861407 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 724 chr1 18336902 18336903 rs1192618 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop,maf-5-all-pops 724 chr1 18337267 18337268 rs1192622 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 633.000000,4375.000000, 0.126398,0.873602, maf-5-some-pop,maf-5-all-pops 724 chr1 18337437 18337438 rs12023927 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3542.000000,1466.000000, 0.707268,0.292732, maf-5-some-pop,maf-5-all-pops 724 chr1 18338417 18338418 rs1192624 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop 724 chr1 18338597 18338598 rs6686302 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1468.000000,3540.000000, 0.293131,0.706869, maf-5-some-pop,maf-5-all-pops 724 chr1 18339747 18339748 rs6586487 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3858.000000,1150.000000, 0.770367,0.229633, maf-5-some-pop,maf-5-all-pops 724 chr1 18339790 18339791 rs1192625 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 672.000000,4336.000000,4336.000000,672.000000, 0.067093,0.432907,0.432907,0.067093, maf-5-some-pop 724 chr1 18339865 18339866 rs16861419 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,genotype-conflict 724 chr1 18340024 18340025 rs17472583 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop,maf-5-all-pops 724 chr1 18340224 18340225 rs11203256 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1887.000000,3121.000000, 0.376797,0.623203, maf-5-some-pop,maf-5-all-pops 724 chr1 18342806 18342807 rs1108624 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop 724 chr1 18342963 18342964 rs794237 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 724 chr1 18343024 18343025 rs12058798 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop,maf-5-all-pops 724 chr1 18343105 18343106 rs12058837 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4250.000000,758.000000, 0.848642,0.151358, maf-5-some-pop,maf-5-all-pops 724 chr1 18343287 18343288 rs7545072 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,genotype-conflict 724 chr1 18344232 18344233 rs11800261 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 724 chr1 18346091 18346092 rs17432613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3939.000000,1069.000000, 0.786542,0.213458, maf-5-some-pop 724 chr1 18346164 18346165 rs4920408 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop 724 chr1 18347598 18347599 rs4920292 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 724 chr1 18349763 18349764 rs2355459 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2201.000000,2807.000000, 0.439497,0.560503, maf-5-some-pop,maf-5-all-pops 724 chr1 18349820 18349821 rs4532860 0 + T T C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4097.000000,911.000000, 0.818091,0.181909, maf-5-some-pop 725 chr1 18350789 18350790 rs12057922 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop 725 chr1 18350865 18350866 rs1316880 0 - G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 875.000000,4133.000000,4133.000000,875.000000, 0.087360,0.412640,0.412640,0.087360, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18352457 18352458 rs2355462 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1211.000000,3797.000000, 0.241813,0.758187, maf-5-some-pop,maf-5-all-pops 725 chr1 18355579 18355580 rs6586490 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4207.000000,801.000000, 0.840056,0.159944, maf-5-some-pop,maf-5-all-pops 725 chr1 18356091 18356092 rs1416401 0 + A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 3 A,G,T, 257.000000,4742.000000,9.000000, 0.051318,0.946885,0.001797, maf-5-some-pop 725 chr1 18359802 18359803 rs7553324 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop,genotype-conflict 725 chr1 18362058 18362059 rs4920413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3294.000000,1714.000000, 0.657748,0.342252, maf-5-some-pop,maf-5-all-pops 725 chr1 18362683 18362684 rs12135074 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop,maf-5-all-pops 725 chr1 18363111 18363112 rs11203264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 35.000000,4973.000000, 0.006989,0.993011, genotype-conflict 725 chr1 18363267 18363268 rs1890498 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 886.000000,4122.000000, 0.176917,0.823083, maf-5-some-pop,genotype-conflict 725 chr1 18363306 18363307 rs16861487 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 725 chr1 18365670 18365671 rs6703371 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3220.000000,1788.000000, 0.642971,0.357029, maf-5-some-pop,maf-5-all-pops 725 chr1 18366685 18366686 rs10887985 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3482.000000,1526.000000, 0.695288,0.304712, maf-5-some-pop,maf-5-all-pops 725 chr1 18369433 18369434 rs6586493 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18373008 18373009 rs12034254 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2821.000000,2187.000000, 0.563299,0.436701, maf-5-some-pop,maf-5-all-pops 725 chr1 18373738 18373739 rs1551478 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2145.000000,2863.000000,2863.000000,2145.000000, 0.214157,0.285843,0.285843,0.214157, maf-5-some-pop,maf-5-all-pops 725 chr1 18374724 18374725 rs4920415 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3236.000000,1772.000000, 0.646166,0.353834, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18374837 18374838 rs4920416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4598.000000,410.000000, 0.918131,0.081869, maf-5-some-pop 725 chr1 18377760 18377761 rs11203271 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4976.000000,32.000000, 0.993610,0.006390, maf-5-some-pop 725 chr1 18377933 18377934 rs1031568 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 725 chr1 18381436 18381437 rs9943227 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,genotype-conflict 725 chr1 18382419 18382420 rs12073160 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4976.000000,32.000000, 0.993610,0.006390, maf-5-some-pop,genotype-conflict 725 chr1 18386302 18386303 rs4920420 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop 725 chr1 18386890 18386891 rs9728680 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop 725 chr1 18392607 18392608 rs4920421 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4220.000000,788.000000, 0.842652,0.157348, maf-5-some-pop 725 chr1 18392751 18392752 rs4920422 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 836.000000,4172.000000, 0.166933,0.833067, maf-5-some-pop 725 chr1 18393004 18393005 rs10158340 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 725 chr1 18393923 18393924 rs9286085 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 1683.000000,3325.000000, 0.336062,0.663938, maf-5-some-pop,maf-5-all-pops 725 chr1 18395712 18395713 rs17433514 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4013.000000,995.000000, 0.801318,0.198682, maf-5-some-pop 725 chr1 18404178 18404179 rs10492993 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 725 chr1 18405072 18405073 rs17486629 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4080.000000,928.000000, 0.814696,0.185304, maf-5-some-pop,genotype-conflict 725 chr1 18405425 18405426 rs4920424 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 725 chr1 18408766 18408767 rs9660584 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2463.000000,2545.000000, 0.491813,0.508187, maf-5-some-pop,maf-5-all-pops 725 chr1 18412380 18412381 rs897496 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 904.000000,4104.000000, 0.180511,0.819489, maf-5-some-pop 725 chr1 18416641 18416642 rs12730245 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 A,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 725 chr1 18420143 18420144 rs12565367 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,genotype-conflict 725 chr1 18422971 18422972 rs11261013 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3038.000000,1970.000000, 0.606629,0.393371, maf-5-some-pop 725 chr1 18425260 18425261 rs12079776 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 725 chr1 18425982 18425983 rs11261023 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2009.000000,2999.000000, 0.401158,0.598842, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18426108 18426109 rs9730657 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025958,0.974042, maf-5-some-pop 725 chr1 18426426 18426427 rs9725704 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 725 chr1 18427144 18427145 rs9659104 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop 725 chr1 18428765 18428766 rs1342572 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4609.000000,399.000000,399.000000,4609.000000, 0.460164,0.039836,0.039836,0.460164, maf-5-some-pop 725 chr1 18429436 18429437 rs41413647 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 C,T, 633.000000,4375.000000, 0.126398,0.873602, maf-5-some-pop,genotype-conflict 725 chr1 18431500 18431501 rs12724674 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 725 chr1 18432023 18432024 rs930850 0 - A A C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1268.000000,3740.000000,3740.000000,1268.000000, 0.126597,0.373403,0.373403,0.126597, maf-5-some-pop,maf-5-all-pops 725 chr1 18438929 18438930 rs10157701 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WUGSC_SSAHASNP, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 725 chr1 18441077 18441078 rs12409641 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 A,C, 3108.000000,1900.000000, 0.620607,0.379393, maf-5-some-pop 725 chr1 18441152 18441153 rs16861571 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 725 chr1 18441413 18441414 rs12403357 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3101.000000,1907.000000, 0.619209,0.380791, maf-5-some-pop 725 chr1 18443991 18443992 rs1342570 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3625.000000,1383.000000, 0.723842,0.276158, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18444008 18444009 rs1342571 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3560.000000,1448.000000, 0.710863,0.289137, maf-5-some-pop,maf-5-all-pops 725 chr1 18445938 18445939 rs12047174 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1986.000000,3022.000000, 0.396565,0.603435, maf-5-some-pop,maf-5-all-pops 725 chr1 18446544 18446545 rs4920297 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4221.000000,787.000000, 0.842851,0.157149, maf-5-some-pop,genotype-conflict 725 chr1 18446815 18446816 rs12756842 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop 725 chr1 18447489 18447490 rs16861578 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop,genotype-conflict 725 chr1 18447550 18447551 rs1858589 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 4285.000000,723.000000,723.000000,4285.000000, 0.427815,0.072185,0.072185,0.427815, maf-5-some-pop 725 chr1 18447852 18447853 rs11261050 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3081.000000,1927.000000, 0.615216,0.384784, maf-5-some-pop,maf-5-all-pops 725 chr1 18448391 18448392 rs11802688 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop 725 chr1 18449523 18449524 rs2355729 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3278.000000,1730.000000, 0.654553,0.345447, maf-5-some-pop 725 chr1 18451419 18451420 rs12401347 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop 725 chr1 18457862 18457863 rs12023227 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3088.000000,1920.000000, 0.616613,0.383387, maf-5-some-pop 725 chr1 18460468 18460469 rs12131391 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 4247.000000,761.000000, 0.848043,0.151957, maf-5-some-pop,genotype-conflict 725 chr1 18460525 18460526 rs9725656 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3256.000000,1752.000000, 0.650160,0.349840, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18464297 18464298 rs11583067 0 + C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 3 C,G,T, 4568.000000,3.000000,437.000000, 0.912141,0.000599,0.087260, maf-5-some-pop 725 chr1 18467264 18467265 rs2005334 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 725 chr1 18467283 18467284 rs753847 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4023.000000,985.000000, 0.803315,0.196685, maf-5-some-pop,maf-5-all-pops 725 chr1 18468753 18468754 rs11581496 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 470.000000,4538.000000, 0.093850,0.906150, maf-5-some-pop 725 chr1 18468788 18468789 rs1455913 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1555.000000,3453.000000,3453.000000,1555.000000, 0.155252,0.344748,0.344748,0.155252, maf-5-some-pop,genotype-conflict 725 chr1 18470008 18470009 rs753305 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1134.000000,3874.000000, 0.226438,0.773562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18470434 18470435 rs41487949 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB, 4 A,C,G,T, 4937.000000,71.000000,71.000000,4937.000000, 0.492911,0.007089,0.007089,0.492911, maf-5-some-pop 725 chr1 18471295 18471296 rs16861635 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop,genotype-conflict 725 chr1 18471736 18471737 rs11261094 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2279.000000,2729.000000, 0.455072,0.544928, maf-5-some-pop,maf-5-all-pops 725 chr1 18472239 18472240 rs9729211 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop,genotype-conflict 725 chr1 18473528 18473529 rs9659598 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 725 chr1 18475426 18475427 rs10492994 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 621.000000,4387.000000, 0.124002,0.875998, maf-5-some-pop,genotype-conflict 725 chr1 18475484 18475485 rs9660184 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3314.000000,1694.000000, 0.661741,0.338259, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18476186 18476187 rs9727014 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 725 chr1 18476230 18476231 rs9727948 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2344.000000,2664.000000, 0.468051,0.531949, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18477449 18477450 rs10796459 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4510.000000,498.000000, 0.900559,0.099441, maf-5-some-pop,maf-5-all-pops,genotype-conflict 725 chr1 18478268 18478269 rs12126587 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2353.000000,2655.000000, 0.469848,0.530152, maf-5-some-pop,maf-5-all-pops 725 chr1 18479722 18479723 rs11806379 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,maf-5-all-pops 725 chr1 18480157 18480158 rs9661646 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 725 chr1 18480496 18480497 rs9661678 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 473.000000,4535.000000, 0.094449,0.905551, maf-5-some-pop 726 chr1 18484109 18484110 rs9659686 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop 726 chr1 18484944 18484945 rs9726285 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 900.000000,4108.000000, 0.179712,0.820288, maf-5-some-pop,maf-5-all-pops 726 chr1 18487905 18487906 rs17435018 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop,genotype-conflict 726 chr1 18489318 18489319 rs12076097 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop 726 chr1 18490060 18490061 rs4920300 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop,genotype-conflict 726 chr1 18490268 18490269 rs11260939 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3473.000000,1535.000000, 0.693490,0.306510, maf-5-some-pop 726 chr1 18490708 18490709 rs11803718 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 726 chr1 18494716 18494717 rs17488056 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop,genotype-conflict 726 chr1 18503813 18503814 rs1031570 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2744.000000,2264.000000, 0.547923,0.452077, maf-5-some-pop,maf-5-all-pops 726 chr1 18504395 18504396 rs755967 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2471.000000,2537.000000,2537.000000,2471.000000, 0.246705,0.253295,0.253295,0.246705, maf-5-some-pop,maf-5-all-pops 726 chr1 18504791 18504792 rs4920448 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop 726 chr1 18507368 18507369 rs11260951 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3051.000000,1957.000000, 0.609225,0.390775, maf-5-some-pop,maf-5-all-pops 726 chr1 18509215 18509216 rs17435426 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,genotype-conflict 726 chr1 18509666 18509667 rs12087645 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,genotype-conflict 726 chr1 18510731 18510732 rs12733863 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop 726 chr1 18510984 18510985 rs17488361 0 + C C A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 3 A,C,G, 33.000000,4762.000000,213.000000, 0.006589,0.950879,0.042532, maf-5-some-pop,genotype-conflict 726 chr1 18514799 18514800 rs16861683 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,maf-5-all-pops 726 chr1 18516702 18516703 rs12567796 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 3910.000000,1098.000000, 0.780751,0.219249, maf-5-some-pop,genotype-conflict 726 chr1 18516988 18516989 rs1539051 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2538.000000,2470.000000, 0.506789,0.493211, maf-5-some-pop 726 chr1 18521738 18521739 rs12046227 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1345.000000,3663.000000, 0.268570,0.731430, maf-5-some-pop,maf-5-all-pops 726 chr1 18523330 18523331 rs4920453 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1369.000000,3639.000000, 0.273363,0.726637, maf-5-some-pop,maf-5-all-pops 726 chr1 18525023 18525024 rs908203 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,genotype-conflict 726 chr1 18525248 18525249 rs16861694 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 726 chr1 18526999 18527000 rs4920458 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3414.000000,1594.000000, 0.681709,0.318291, maf-5-some-pop,maf-5-all-pops 726 chr1 18527212 18527213 rs4920459 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3175.000000,1833.000000, 0.633986,0.366014, maf-5-some-pop,maf-5-all-pops 726 chr1 18527266 18527267 rs4920460 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3426.000000,1582.000000, 0.684105,0.315895, maf-5-some-pop,maf-5-all-pops 726 chr1 18529110 18529111 rs9659886 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2629.000000,2379.000000, 0.524960,0.475040, maf-5-some-pop,maf-5-all-pops 726 chr1 18533280 18533281 rs4920461 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop,maf-5-all-pops 726 chr1 18534362 18534363 rs1356000 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 734.000000,4274.000000, 0.146565,0.853435, maf-5-some-pop,maf-5-all-pops 726 chr1 18536943 18536944 rs4920463 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2021.000000,2987.000000, 0.403554,0.596446, maf-5-some-pop,maf-5-all-pops 726 chr1 18542055 18542056 rs12027569 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 726 chr1 18550408 18550409 rs1013007 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 3991.000000,1017.000000, 0.796925,0.203075, maf-5-some-pop 726 chr1 18550653 18550654 rs1417756 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2759.000000,2249.000000, 0.550919,0.449081, maf-5-some-pop,maf-5-all-pops 726 chr1 18550682 18550683 rs12033929 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4483.000000,525.000000, 0.895168,0.104832, maf-5-some-pop 726 chr1 18551193 18551194 rs2355999 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop 726 chr1 18553631 18553632 rs17489003 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1006.000000,4002.000000, 0.200879,0.799121, maf-5-some-pop 726 chr1 18554710 18554711 rs3738089 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 765.000000,4243.000000, 0.152756,0.847244, maf-5-some-pop,genotype-conflict 726 chr1 18555658 18555659 rs10907296 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4261.000000,747.000000, 0.850839,0.149161, maf-5-some-pop 726 chr1 18557203 18557204 rs10907297 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2407.000000,2601.000000, 0.480631,0.519369, maf-5-some-pop,maf-5-all-pops 726 chr1 18557744 18557745 rs12037086 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,C, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop 726 chr1 18561376 18561377 rs12041024 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop 726 chr1 18561515 18561516 rs12040189 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4009.000000,999.000000, 0.800519,0.199481, maf-5-some-pop 726 chr1 18562116 18562117 rs11584495 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2771.000000,2237.000000, 0.553315,0.446685, maf-5-some-pop,maf-5-all-pops 726 chr1 18562984 18562985 rs6663092 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041534, maf-5-some-pop 726 chr1 18563448 18563449 rs11260963 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2591.000000,2417.000000, 0.517372,0.482628, maf-5-some-pop,maf-5-all-pops 726 chr1 18563682 18563683 rs10907298 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1161.000000,3847.000000, 0.231829,0.768171, maf-5-some-pop,maf-5-all-pops 726 chr1 18563888 18563889 rs4920310 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2469.000000,2539.000000, 0.493011,0.506989, maf-5-some-pop,maf-5-all-pops 726 chr1 18564668 18564669 rs1341306 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1306.000000,3702.000000, 0.260783,0.739217, maf-5-some-pop 726 chr1 18565166 18565167 rs10907299 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop 726 chr1 18566850 18566851 rs2883821 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 726 chr1 18566989 18566990 rs997007 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 726 chr1 18570205 18570206 rs872730 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 726 chr1 18572900 18572901 rs109490 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2213.000000,2795.000000,2795.000000,2213.000000, 0.220946,0.279054,0.279054,0.220946, maf-5-some-pop,maf-5-all-pops 726 chr1 18576712 18576713 rs223198 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4245.000000,763.000000, 0.847644,0.152356, maf-5-some-pop 726 chr1 18577109 18577110 rs223199 0 + G G G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 205.000000,1780.000000, 0.103275,0.896725, maf-5-some-pop 726 chr1 18578074 18578075 rs1003741 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 G,T, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop,genotype-conflict 726 chr1 18578247 18578248 rs11260966 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop,maf-5-all-pops 726 chr1 18585019 18585020 rs223185 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 1439.000000,3569.000000, 0.287340,0.712660, maf-5-some-pop,genotype-conflict 726 chr1 18585844 18585845 rs223188 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4162.000000,846.000000, 0.831070,0.168930, maf-5-some-pop 726 chr1 18586419 18586420 rs371505 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop,genotype-conflict 726 chr1 18586814 18586815 rs402642 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop,maf-5-all-pops 726 chr1 18589619 18589620 rs419971 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1589.000000,3419.000000,3419.000000,1589.000000, 0.158646,0.341354,0.341354,0.158646, maf-5-some-pop,maf-5-all-pops 726 chr1 18589742 18589743 rs516656 0 - C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 726 chr1 18591320 18591321 rs7542149 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 726 chr1 18591751 18591752 rs223203 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3868.000000,1140.000000, 0.772364,0.227636, maf-5-some-pop,genotype-conflict 726 chr1 18594366 18594367 rs100622 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3766.000000,1242.000000, 0.751997,0.248003, maf-5-some-pop 726 chr1 18595425 18595426 rs10489572 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop 726 chr1 18595858 18595859 rs16861776 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop 726 chr1 18601601 18601602 rs223189 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4823.000000,185.000000,185.000000,4823.000000, 0.481530,0.018470,0.018470,0.481530, maf-5-some-pop 726 chr1 18601874 18601875 rs4083984 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3969.000000,1039.000000,1039.000000,3969.000000, 0.396266,0.103734,0.103734,0.396266, maf-5-some-pop 726 chr1 18606532 18606533 rs41388954 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,GMI,JMKIDD_LAB,SSMP, 2 C,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 726 chr1 18609245 18609246 rs4920470 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop 727 chr1 18612668 18612669 rs6670195 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4272.000000,736.000000, 0.853035,0.146965, maf-5-some-pop 727 chr1 18622404 18622405 rs223159 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2824.000000,2184.000000,2184.000000,2824.000000, 0.281949,0.218051,0.218051,0.281949, maf-5-some-pop,maf-5-all-pops 727 chr1 18623323 18623324 rs223160 0 - C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 727 chr1 18625607 18625608 rs16861799 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 727 chr1 18626916 18626917 rs1832787 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2539.000000,2469.000000,2469.000000,2539.000000, 0.253494,0.246506,0.246506,0.253494, maf-5-some-pop 727 chr1 18627711 18627712 rs223165 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 250.000000,4758.000000,4758.000000,250.000000, 0.024960,0.475040,0.475040,0.024960, maf-5-some-pop 727 chr1 18628583 18628584 rs586433 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 727 chr1 18630105 18630106 rs1533345 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 841.000000,4167.000000,4167.000000,841.000000, 0.083966,0.416034,0.416034,0.083966, maf-5-some-pop 727 chr1 18630149 18630150 rs1555219 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3016.000000,1992.000000, 0.602236,0.397764, maf-5-some-pop,maf-5-all-pops 727 chr1 18630212 18630213 rs223158 0 - A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 727 chr1 18630764 18630765 rs9651255 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3082.000000,1926.000000, 0.615415,0.384585, maf-5-some-pop,maf-5-all-pops 727 chr1 18631141 18631142 rs10907304 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2151.000000,2857.000000, 0.429513,0.570487, maf-5-some-pop,maf-5-all-pops 727 chr1 18631174 18631175 rs12134352 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2525.000000,2483.000000, 0.504193,0.495807, maf-5-some-pop 727 chr1 18632800 18632801 rs11260978 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2290.000000,2718.000000, 0.457268,0.542732, maf-5-some-pop,maf-5-all-pops 727 chr1 18633356 18633357 rs12127986 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 G,T, 4053.000000,955.000000, 0.809305,0.190695, maf-5-some-pop 727 chr1 18633939 18633940 rs761585 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2497.000000,2511.000000, 0.498602,0.501398, maf-5-some-pop,genotype-conflict 727 chr1 18643334 18643335 rs4920475 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop,genotype-conflict 727 chr1 18643348 18643349 rs4920476 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop 727 chr1 18643410 18643411 rs17277497 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 727 chr1 18645010 18645011 rs10796446 0 + T T A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3349.000000,1659.000000, 0.668730,0.331270, maf-5-some-pop 727 chr1 18645230 18645231 rs223210 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 193.000000,4815.000000,4815.000000,193.000000, 0.019269,0.480731,0.480731,0.019269, maf-5-some-pop 727 chr1 18646230 18646231 rs1040623 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3126.000000,1882.000000, 0.624201,0.375799, maf-5-some-pop,maf-5-all-pops 727 chr1 18648298 18648299 rs223218 0 - G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3285.000000,1723.000000,1723.000000,3285.000000, 0.327975,0.172025,0.172025,0.327975, maf-5-some-pop,maf-5-all-pops 727 chr1 18650793 18650794 rs223226 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 4665.000000,343.000000,343.000000,4665.000000, 0.465755,0.034245,0.034245,0.465755, maf-5-some-pop,genotype-conflict 727 chr1 18651072 18651073 rs737121 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop 727 chr1 18654306 18654307 rs223170 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1597.000000,3411.000000, 0.318890,0.681110, maf-5-some-pop 727 chr1 18654870 18654871 rs513728 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop 727 chr1 18655338 18655339 rs4920478 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1239.000000,3769.000000, 0.247404,0.752596, maf-5-some-pop 727 chr1 18655389 18655390 rs4920312 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1238.000000,3770.000000, 0.247204,0.752796, maf-5-some-pop 727 chr1 18656737 18656738 rs573262 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3855.000000,1153.000000,1153.000000,3855.000000, 0.384884,0.115116,0.115116,0.384884, maf-5-some-pop,maf-5-all-pops 727 chr1 18657449 18657450 rs851444 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2753.000000,2255.000000, 0.549720,0.450280, maf-5-some-pop,maf-5-all-pops 727 chr1 18658226 18658227 rs12411228 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3068.000000,1940.000000, 0.612620,0.387380, maf-5-some-pop,maf-5-all-pops,genotype-conflict 727 chr1 18658536 18658537 rs11260983 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,genotype-conflict 727 chr1 18661582 18661583 rs536540 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3100.000000,1908.000000,1908.000000,3100.000000, 0.309505,0.190495,0.190495,0.309505, maf-5-some-pop,maf-5-all-pops 727 chr1 18665123 18665124 rs33947700 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop 727 chr1 18666218 18666219 rs6603894 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3435.000000,1573.000000, 0.685903,0.314097, maf-5-some-pop,maf-5-all-pops 727 chr1 18668338 18668339 rs7517220 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 361.000000,4647.000000, 0.072085,0.927915, maf-5-some-pop 727 chr1 18668500 18668501 rs11260984 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3028.000000,1980.000000, 0.604633,0.395367, maf-5-some-pop,maf-5-all-pops 727 chr1 18669449 18669450 rs648097 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1900.000000,3108.000000,3108.000000,1900.000000, 0.189696,0.310304,0.310304,0.189696, maf-5-some-pop,maf-5-all-pops 727 chr1 18678169 18678170 rs16861827 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop 727 chr1 18681919 18681920 rs519312 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1657.000000,3351.000000,3351.000000,1657.000000, 0.165435,0.334565,0.334565,0.165435, maf-5-some-pop,maf-5-all-pops 727 chr1 18685201 18685202 rs10489573 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4117.000000,891.000000, 0.822085,0.177915, maf-5-some-pop 727 chr1 18687882 18687883 rs2003724 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 727 chr1 18687911 18687912 rs1763903 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4202.000000,806.000000,806.000000,4202.000000, 0.419529,0.080471,0.080471,0.419529, maf-5-some-pop,maf-5-all-pops 727 chr1 18688077 18688078 rs16861839 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 727 chr1 18689251 18689252 rs4920485 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3759.000000,1249.000000, 0.750599,0.249401, maf-5-some-pop 727 chr1 18689504 18689505 rs4920486 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3551.000000,1457.000000, 0.709065,0.290935, maf-5-some-pop,maf-5-all-pops 727 chr1 18689606 18689607 rs16861844 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,maf-5-all-pops 727 chr1 18690612 18690613 rs12070561 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 G,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop 727 chr1 18691613 18691614 rs12079178 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 838.000000,4170.000000, 0.167332,0.832668, maf-5-some-pop,maf-5-all-pops 727 chr1 18691683 18691684 rs11583843 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop 727 chr1 18693706 18693707 rs11260991 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop 727 chr1 18696134 18696135 rs12125819 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 774.000000,4234.000000, 0.154553,0.845447, maf-5-some-pop,maf-5-all-pops 727 chr1 18696346 18696347 rs11582494 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 727 chr1 18697022 18697023 rs7514110 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3699.000000,1309.000000, 0.738618,0.261382, maf-5-some-pop,maf-5-all-pops 727 chr1 18700011 18700012 rs11583062 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 3945.000000,1063.000000, 0.787740,0.212260, maf-5-some-pop,maf-5-all-pops 727 chr1 18701360 18701361 rs7556114 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop 727 chr1 18701730 18701731 rs12078718 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 727 chr1 18702486 18702487 rs11260995 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4076.000000,932.000000, 0.813898,0.186102, maf-5-some-pop,maf-5-all-pops 727 chr1 18702562 18702563 rs10157096 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1310.000000,3698.000000, 0.261581,0.738419, maf-5-some-pop,maf-5-all-pops,genotype-conflict 727 chr1 18703671 18703672 rs2271861 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop,maf-5-all-pops 727 chr1 18704292 18704293 rs11582444 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 727 chr1 18705499 18705500 rs945499 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1780.000000,3228.000000,3228.000000,1780.000000, 0.177716,0.322284,0.322284,0.177716, maf-5-some-pop,maf-5-all-pops 727 chr1 18705693 18705694 rs12566510 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3877.000000,1131.000000, 0.774161,0.225839, maf-5-some-pop 727 chr1 18707372 18707373 rs10492995 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop 727 chr1 18707466 18707467 rs4920489 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop 727 chr1 18708802 18708803 rs1889863 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop 727 chr1 18712834 18712835 rs11585826 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,KRIBB_YJKIM, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 727 chr1 18718304 18718305 rs11260998 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2091.000000,2917.000000, 0.417532,0.582468, maf-5-some-pop,maf-5-all-pops,genotype-conflict 727 chr1 18721877 18721878 rs2152552 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1320.000000,705.000000, 0.651852,0.348148, maf-5-some-pop,maf-5-all-pops 727 chr1 18722712 18722713 rs1336130 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2042.000000,2966.000000, 0.407748,0.592252, maf-5-some-pop,maf-5-all-pops,genotype-conflict 727 chr1 18722736 18722737 rs1336131 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 G,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop,genotype-conflict 727 chr1 18724931 18724932 rs12046126 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops 727 chr1 18725022 18725023 rs4920494 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1064.000000,3944.000000, 0.212460,0.787540, maf-5-some-pop,maf-5-all-pops 727 chr1 18728580 18728581 rs7512723 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3162.000000,1846.000000, 0.631390,0.368610, maf-5-some-pop,maf-5-all-pops 727 chr1 18730304 18730305 rs7523920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3288.000000,1720.000000, 0.656550,0.343450, maf-5-some-pop,maf-5-all-pops 727 chr1 18732979 18732980 rs867538 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3649.000000,1359.000000,1359.000000,3649.000000, 0.364317,0.135683,0.135683,0.364317, maf-5-some-pop 727 chr1 18733116 18733117 rs1878975 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3789.000000,1219.000000,1219.000000,3789.000000, 0.378295,0.121705,0.121705,0.378295, maf-5-some-pop,maf-5-all-pops 727 chr1 18733554 18733555 rs6660946 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3679.000000,1329.000000, 0.734625,0.265375, maf-5-some-pop,maf-5-all-pops 727 chr1 18733580 18733581 rs12059345 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop 727 chr1 18736535 18736536 rs9662941 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop,maf-5-all-pops,genotype-conflict 727 chr1 18736990 18736991 rs7512838 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2350.000000,2658.000000, 0.469249,0.530751, maf-5-some-pop,genotype-conflict 727 chr1 18737015 18737016 rs7512850 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 727 chr1 18737232 18737233 rs12119827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4225.000000,783.000000, 0.843650,0.156350, maf-5-some-pop 727 chr1 18737779 18737780 rs7529216 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop 728 chr1 18756579 18756580 rs4920495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 43.000000,4965.000000, 0.008586,0.991414, maf-5-some-pop 728 chr1 18758185 18758186 rs4920496 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2186.000000,2822.000000, 0.436502,0.563498, maf-5-some-pop,maf-5-all-pops 728 chr1 18761123 18761124 rs1336122 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2212.000000,2796.000000,2796.000000,2212.000000, 0.220847,0.279153,0.279153,0.220847, maf-5-some-pop,maf-5-all-pops 728 chr1 18761499 18761500 rs10796455 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2327.000000,2681.000000, 0.464657,0.535343, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18761892 18761893 rs1850750 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop 728 chr1 18764190 18764191 rs10907311 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops 728 chr1 18765152 18765153 rs17437569 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 593.000000,4415.000000, 0.118411,0.881589, maf-5-some-pop 728 chr1 18765307 18765308 rs1336128 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1246.000000,3762.000000,3762.000000,1246.000000, 0.124401,0.375599,0.375599,0.124401, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18766760 18766761 rs1568339 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2467.000000,2541.000000, 0.492612,0.507388, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18766812 18766813 rs11261011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SNP500CANCER,SSAHASNP,SSMP, 2 A,G, 749.000000,4259.000000, 0.149561,0.850439, maf-5-some-pop,genotype-conflict 728 chr1 18766849 18766850 rs1568340 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1650.000000,3358.000000, 0.329473,0.670527, maf-5-some-pop,maf-5-all-pops 728 chr1 18767080 18767081 rs12136062 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2548.000000,2460.000000, 0.508786,0.491214, maf-5-some-pop,maf-5-all-pops 728 chr1 18769574 18769575 rs12408368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4439.000000,569.000000, 0.886382,0.113618, maf-5-some-pop,genotype-conflict 728 chr1 18770053 18770054 rs2946527 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 973.000000,4035.000000, 0.194289,0.805711, maf-5-some-pop,maf-5-all-pops 728 chr1 18770212 18770213 rs2946528 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3420.000000,1588.000000, 0.682907,0.317093, maf-5-some-pop,maf-5-all-pops 728 chr1 18772970 18772971 rs2946532 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2983.000000,2025.000000,2025.000000,2983.000000, 0.297823,0.202177,0.202177,0.297823, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18781287 18781288 rs2184708 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 455.000000,4553.000000,4553.000000,455.000000, 0.045427,0.454573,0.454573,0.045427, maf-5-some-pop,genotype-conflict 728 chr1 18785465 18785466 rs10907312 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3717.000000,1291.000000, 0.742212,0.257788, maf-5-some-pop,genotype-conflict 728 chr1 18786778 18786779 rs7535812 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3226.000000,1782.000000, 0.644169,0.355831, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18787445 18787446 rs1414642 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 259.000000,4749.000000,4749.000000,259.000000, 0.025859,0.474141,0.474141,0.025859, maf-5-some-pop,genotype-conflict 728 chr1 18791010 18791011 rs12409379 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop 728 chr1 18792299 18792300 rs12144656 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop 728 chr1 18793385 18793386 rs12041192 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 251.000000,4757.000000, 0.050120,0.949880, maf-5-some-pop 728 chr1 18793519 18793520 rs3007727 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop,maf-5-all-pops 728 chr1 18793635 18793636 rs11261014 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3902.000000,1106.000000, 0.779153,0.220847, maf-5-some-pop,maf-5-all-pops 728 chr1 18794240 18794241 rs3007728 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop,genotype-conflict 728 chr1 18795254 18795255 rs3007729 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2233.000000,2775.000000, 0.445887,0.554113, maf-5-some-pop,microattr-tpa 728 chr1 18797099 18797100 rs3007730 0 + G G G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 649.000000,4359.000000, 0.129593,0.870407, maf-5-some-pop 728 chr1 18797702 18797703 rs2992736 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2763.000000,2245.000000,2245.000000,2763.000000, 0.275859,0.224141,0.224141,0.275859, maf-5-some-pop,maf-5-all-pops 728 chr1 18800246 18800247 rs6665151 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3216.000000,1792.000000, 0.642173,0.357827, maf-5-some-pop,maf-5-all-pops 728 chr1 18804143 18804144 rs2992764 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3394.000000,1614.000000,1614.000000,3394.000000, 0.338858,0.161142,0.161142,0.338858, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18807116 18807117 rs7528206 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 471.000000,4537.000000, 0.094049,0.905950, maf-5-some-pop 728 chr1 18808291 18808292 rs2992753 0 - C C G/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 30 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3370.000000,1638.000000,1638.000000,3370.000000, 0.336462,0.163538,0.163538,0.336462, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18808710 18808711 rs2992751 0 - G G C/G genomic single unknown 0 0 coding-synon exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 728 chr1 18809895 18809896 rs2992745 0 - A A A/T genomic single unknown 0 0 intron,untranslated-3 exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 728 chr1 18811667 18811668 rs3007719 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3581.000000,1427.000000, 0.715056,0.284944, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18812175 18812176 rs872355 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1511.000000,3497.000000, 0.301717,0.698283, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18812315 18812316 rs708088 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1952.000000,3056.000000,3056.000000,1952.000000, 0.194888,0.305112,0.305112,0.194888, maf-5-some-pop,maf-5-all-pops 728 chr1 18813008 18813009 rs11576505 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 728 chr1 18813025 18813026 rs3007720 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18814564 18814565 rs10907313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1011.000000,3997.000000, 0.201877,0.798123, maf-5-some-pop,genotype-conflict 728 chr1 18816270 18816271 rs12403697 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 A,C, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop 728 chr1 18816615 18816616 rs4531264 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1273.000000,3735.000000, 0.254193,0.745807, maf-5-some-pop,maf-5-all-pops 728 chr1 18821782 18821783 rs12404727 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18824362 18824363 rs909950 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 845.000000,4163.000000,4163.000000,845.000000, 0.084365,0.415635,0.415635,0.084365, maf-5-some-pop 728 chr1 18824841 18824842 rs909949 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 901.000000,4107.000000,4107.000000,901.000000, 0.089956,0.410044,0.410044,0.089956, maf-5-some-pop 728 chr1 18826464 18826465 rs6695257 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3106.000000,1902.000000, 0.620208,0.379792, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18826709 18826710 rs11261025 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4122.000000,886.000000, 0.823083,0.176917, maf-5-some-pop 728 chr1 18827049 18827050 rs10907315 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1271.000000,3737.000000, 0.253794,0.746206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18831011 18831012 rs12083039 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1946.000000,3062.000000, 0.388578,0.611422, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18838321 18838322 rs17351871 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop 728 chr1 18838667 18838668 rs2816063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,TISHKOFF, 2 C,T, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop 728 chr1 18839125 18839126 rs2745302 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2417.000000,2591.000000,2591.000000,2417.000000, 0.241314,0.258686,0.258686,0.241314, maf-5-some-pop,maf-5-all-pops 728 chr1 18839393 18839394 rs2294656 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1314.000000,3694.000000,3694.000000,1314.000000, 0.131190,0.368810,0.368810,0.131190, maf-5-some-pop,maf-5-all-pops 728 chr1 18839807 18839808 rs2982486 0 - T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 728 chr1 18845012 18845013 rs11806986 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 728 chr1 18845142 18845143 rs2816022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 728 chr1 18852832 18852833 rs6691999 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 G,T, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,genotype-conflict 728 chr1 18853489 18853490 rs2816027 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop 728 chr1 18855541 18855542 rs2816028 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 826.000000,4182.000000, 0.164936,0.835064, maf-5-some-pop 728 chr1 18855559 18855560 rs714174 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 728 chr1 18857491 18857492 rs3000058 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1602.000000,3406.000000,3406.000000,1602.000000, 0.159944,0.340056,0.340056,0.159944, maf-5-some-pop,maf-5-all-pops,genotype-conflict 728 chr1 18857597 18857598 rs2816030 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1613.000000,3395.000000, 0.322085,0.677915, maf-5-some-pop,maf-5-all-pops 728 chr1 18863501 18863502 rs12401403 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3441.000000,1567.000000, 0.687101,0.312899, maf-5-some-pop,maf-5-all-pops 728 chr1 18867273 18867274 rs9439712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 728 chr1 18869085 18869086 rs16862057 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 728 chr1 18871887 18871888 rs11581101 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 728 chr1 18872412 18872413 rs2745329 0 - A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 728 chr1 18874252 18874253 rs4375229 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop,genotype-conflict 729 chr1 18877476 18877477 rs16862061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1345.000000,3663.000000, 0.268570,0.731430, maf-5-some-pop 729 chr1 18887705 18887706 rs2816039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP, 2 C,T, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 729 chr1 18889535 18889536 rs2816040 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2171.000000,2837.000000, 0.433506,0.566494, maf-5-some-pop,maf-5-all-pops,genotype-conflict 729 chr1 18893707 18893708 rs2816046 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2711.000000,2297.000000, 0.541334,0.458666, maf-5-some-pop,maf-5-all-pops,genotype-conflict 729 chr1 18895843 18895844 rs2745318 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2883.000000,2125.000000,2125.000000,2883.000000, 0.287839,0.212161,0.212161,0.287839, maf-5-some-pop,maf-5-all-pops,genotype-conflict 729 chr1 18899510 18899511 rs11806753 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop,maf-5-all-pops 729 chr1 18899931 18899932 rs11806115 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 729 chr1 18903562 18903563 rs2816060 0 + A A A/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop,genotype-conflict 729 chr1 18903818 18903819 rs2816061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2222.000000,2786.000000, 0.443690,0.556310, maf-5-some-pop,maf-5-all-pops 729 chr1 18913557 18913558 rs4920334 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop,maf-5-all-pops 729 chr1 18913617 18913618 rs4920516 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1630.000000,3378.000000, 0.325479,0.674521, maf-5-some-pop,maf-5-all-pops 729 chr1 18913833 18913834 rs4920335 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1630.000000,3378.000000, 0.325479,0.674521, maf-5-some-pop,maf-5-all-pops,genotype-conflict 729 chr1 18914103 18914104 rs2816064 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2736.000000,2272.000000, 0.546326,0.453674, maf-5-some-pop,maf-5-all-pops 729 chr1 18915933 18915934 rs2982488 0 - T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 729 chr1 18920684 18920685 rs6684839 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop 729 chr1 18924919 18924920 rs12092183 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 729 chr1 18926588 18926589 rs6704504 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1970.000000,3038.000000, 0.393371,0.606629, maf-5-some-pop,maf-5-all-pops 729 chr1 18934080 18934081 rs6703076 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 729 chr1 18940726 18940727 rs16862099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 471.000000,4537.000000, 0.094049,0.905950, maf-5-some-pop 729 chr1 18945210 18945211 rs4027744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2511.000000,2497.000000, 0.501398,0.498602, maf-5-some-pop,maf-5-all-pops 729 chr1 18946307 18946308 rs16862102 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4450.000000,558.000000, 0.888578,0.111422, maf-5-some-pop,genotype-conflict 729 chr1 18950167 18950168 rs16862104 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 729 chr1 18951904 18951905 rs10489154 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 78.000000,4930.000000,4930.000000,78.000000, 0.007788,0.492212,0.492212,0.007788, maf-5-some-pop 729 chr1 18951984 18951985 rs7541797 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1221.000000,3787.000000, 0.243810,0.756190, maf-5-some-pop 729 chr1 18952033 18952034 rs6702821 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 729 chr1 18952111 18952112 rs17352100 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3518.000000,1490.000000, 0.702476,0.297524, maf-5-some-pop 729 chr1 18958476 18958477 rs9661940 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,genotype-conflict 729 chr1 18962094 18962095 rs1934057 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2773.000000,2235.000000, 0.553714,0.446286, maf-5-some-pop,maf-5-all-pops,genotype-conflict 729 chr1 18964020 18964021 rs10907325 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2236.000000,2772.000000, 0.446486,0.553514, maf-5-some-pop,maf-5-all-pops 729 chr1 18965359 18965360 rs10907326 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2511.000000,2497.000000, 0.501398,0.498602, maf-5-some-pop,maf-5-all-pops 729 chr1 18976216 18976217 rs7538945 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2142.000000,2866.000000, 0.427716,0.572284, maf-5-some-pop,maf-5-all-pops 729 chr1 18977336 18977337 rs2298893 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 274.000000,4734.000000,4734.000000,274.000000, 0.027356,0.472644,0.472644,0.027356, maf-5-some-pop 729 chr1 18980398 18980399 rs742070 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2737.000000,2271.000000,2271.000000,2737.000000, 0.273263,0.226737,0.226737,0.273263, maf-5-some-pop,maf-5-all-pops 729 chr1 18994433 18994434 rs3791031 0 - A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 729 chr1 18995325 18995326 rs12141588 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 729 chr1 19001747 19001748 rs2236830 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4682.000000,326.000000,326.000000,4682.000000, 0.467452,0.032548,0.032548,0.467452, maf-5-some-pop 729 chr1 19003592 19003593 rs11576839 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop,genotype-conflict 730 chr1 19006151 19006152 rs618941 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4256.000000,752.000000,752.000000,4256.000000, 0.424920,0.075080,0.075080,0.424920, maf-5-some-pop,genotype-conflict 730 chr1 19006932 19006933 rs9439718 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop 730 chr1 19012763 19012764 rs2860130 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 730 chr1 19014864 19014865 rs7527312 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4244.000000,764.000000, 0.847444,0.152556, maf-5-some-pop,genotype-conflict 730 chr1 19016521 19016522 rs545793 0 - G G C/G genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 730 chr1 19017854 19017855 rs2743208 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4116.000000,892.000000,892.000000,4116.000000, 0.410942,0.089058,0.089058,0.410942, maf-5-some-pop,maf-5-all-pops 730 chr1 19018130 19018131 rs2076021 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 549.000000,4459.000000,4459.000000,549.000000, 0.054812,0.445188,0.445188,0.054812, maf-5-some-pop 730 chr1 19018404 19018405 rs2076020 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,YUSUKE, 4 A,C,G,T, 506.000000,4502.000000,4502.000000,506.000000, 0.050519,0.449481,0.449481,0.050519, maf-5-some-pop 730 chr1 19019979 19019980 rs2236826 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4417.000000,591.000000,591.000000,4417.000000, 0.440994,0.059006,0.059006,0.440994, maf-5-some-pop 730 chr1 19021372 19021373 rs585075 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3611.000000,1397.000000,1397.000000,3611.000000, 0.360523,0.139477,0.139477,0.360523, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19023845 19023846 rs2282704 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 586.000000,4422.000000,4422.000000,586.000000, 0.058506,0.441494,0.441494,0.058506, maf-5-some-pop,genotype-conflict 730 chr1 19027801 19027802 rs2743200 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4702.000000,306.000000,306.000000,4702.000000, 0.469449,0.030551,0.030551,0.469449, maf-5-some-pop 730 chr1 19031893 19031894 rs515739 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19033326 19033327 rs16862193 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop 730 chr1 19035201 19035202 rs17352302 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 730 chr1 19035359 19035360 rs2282699 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 124.000000,4884.000000,4884.000000,124.000000, 0.012380,0.487620,0.487620,0.012380, maf-5-some-pop 730 chr1 19041261 19041262 rs2743197 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1433.000000,3575.000000,3575.000000,1433.000000, 0.143071,0.356929,0.356929,0.143071, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19041464 19041465 rs9439728 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop 730 chr1 19041597 19041598 rs6670751 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1623.000000,3385.000000, 0.324081,0.675919, maf-5-some-pop 730 chr1 19043988 19043989 rs11261052 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 886.000000,4122.000000, 0.176917,0.823083, maf-5-some-pop,maf-5-all-pops 730 chr1 19044876 19044877 rs624761 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4012.000000,996.000000,996.000000,4012.000000, 0.400559,0.099441,0.099441,0.400559, maf-5-some-pop,maf-5-all-pops 730 chr1 19046484 19046485 rs851123 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3667.000000,1341.000000,1341.000000,3667.000000, 0.366114,0.133886,0.133886,0.366114, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19049614 19049615 rs2236817 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 796.000000,4212.000000,4212.000000,796.000000, 0.079473,0.420527,0.420527,0.079473, maf-5-some-pop 730 chr1 19049945 19049946 rs2236815 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2046.000000,2962.000000,2962.000000,2046.000000, 0.204273,0.295727,0.295727,0.204273, maf-5-some-pop,maf-5-all-pops 730 chr1 19054977 19054978 rs2236808 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1855.000000,3153.000000,3153.000000,1855.000000, 0.185204,0.314796,0.314796,0.185204, maf-5-some-pop 730 chr1 19056381 19056382 rs2743189 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1309.000000,3699.000000,3699.000000,1309.000000, 0.130691,0.369309,0.369309,0.130691, maf-5-some-pop 730 chr1 19065785 19065786 rs9439734 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4655.000000,353.000000, 0.929513,0.070487, maf-5-some-pop 730 chr1 19066964 19066965 rs11261055 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 730 chr1 19067367 19067368 rs685300 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3176.000000,1832.000000,1832.000000,3176.000000, 0.317093,0.182907,0.182907,0.317093, maf-5-some-pop,maf-5-all-pops 730 chr1 19068261 19068262 rs2789328 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4691.000000,317.000000,317.000000,4691.000000, 0.468351,0.031649,0.031649,0.468351, maf-5-some-pop 730 chr1 19069341 19069342 rs9439687 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4596.000000,412.000000, 0.917732,0.082268, maf-5-some-pop 730 chr1 19069843 19069844 rs551027 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4484.000000,524.000000,524.000000,4484.000000, 0.447684,0.052316,0.052316,0.447684, maf-5-some-pop 730 chr1 19070567 19070568 rs12066169 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 730 chr1 19070608 19070609 rs2743185 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 323.000000,4685.000000,4685.000000,323.000000, 0.032248,0.467752,0.467752,0.032248, maf-5-some-pop 730 chr1 19072925 19072926 rs485874 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2082.000000,2926.000000, 0.415735,0.584265, maf-5-some-pop,maf-5-all-pops 730 chr1 19077824 19077825 rs626600 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 544.000000,4464.000000,4464.000000,544.000000, 0.054313,0.445687,0.445687,0.054313, maf-5-some-pop,genotype-conflict 730 chr1 19079949 19079950 rs851113 0 - C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 730 chr1 19080877 19080878 rs12405928 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1180.000000,3828.000000, 0.235623,0.764377, maf-5-some-pop 730 chr1 19082703 19082704 rs12049433 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 4060.000000,948.000000, 0.810703,0.189297, maf-5-some-pop 730 chr1 19084256 19084257 rs2056446 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 730 chr1 19084358 19084359 rs2743213 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4636.000000,372.000000,372.000000,4636.000000, 0.462859,0.037141,0.037141,0.462859, maf-5-some-pop,genotype-conflict 730 chr1 19084650 19084651 rs2789324 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4603.000000,405.000000,405.000000,4603.000000, 0.459565,0.040435,0.040435,0.459565, maf-5-some-pop,genotype-conflict 730 chr1 19090079 19090080 rs510843 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1728.000000,3280.000000,3280.000000,1728.000000, 0.172524,0.327476,0.327476,0.172524, maf-5-some-pop,maf-5-all-pops 730 chr1 19090349 19090350 rs12123797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,genotype-conflict 730 chr1 19091408 19091409 rs2789336 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 730 chr1 19091467 19091468 rs12075043 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 730 chr1 19093995 19093996 rs2841076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 730 chr1 19094789 19094790 rs7545724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop,genotype-conflict 730 chr1 19094828 19094829 rs9439743 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop,genotype-conflict 730 chr1 19094895 19094896 rs7416370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3359.000000,1649.000000, 0.670727,0.329273, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19095100 19095101 rs4920530 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3041.000000,1967.000000, 0.607228,0.392772, maf-5-some-pop,maf-5-all-pops 730 chr1 19096256 19096257 rs2841078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1667.000000,3341.000000, 0.332867,0.667133, maf-5-some-pop,maf-5-all-pops 730 chr1 19097976 19097977 rs4920532 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 730 chr1 19098596 19098597 rs2789346 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 730 chr1 19100056 19100057 rs6603908 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,genotype-conflict 730 chr1 19100177 19100178 rs2789337 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 758.000000,4250.000000,4250.000000,758.000000, 0.075679,0.424321,0.424321,0.075679, maf-5-some-pop 730 chr1 19100331 19100332 rs16862254 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4090.000000,918.000000, 0.816693,0.183307, maf-5-some-pop 730 chr1 19104380 19104381 rs4920344 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,genotype-conflict 730 chr1 19105312 19105313 rs12722849 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 730 chr1 19108909 19108910 rs4920345 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop 730 chr1 19109035 19109036 rs6669544 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop,genotype-conflict 730 chr1 19110093 19110094 rs17492231 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 730 chr1 19112849 19112850 rs7413291 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 730 chr1 19113025 19113026 rs4076925 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4003.000000,1005.000000,1005.000000,4003.000000, 0.399661,0.100339,0.100339,0.399661, maf-5-some-pop,maf-5-all-pops 730 chr1 19113057 19113058 rs6603910 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 410.000000,4598.000000, 0.081869,0.918131, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19116232 19116233 rs6603911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop 730 chr1 19117299 19117300 rs11261069 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 730 chr1 19119909 19119910 rs11261070 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1299.000000,3709.000000, 0.259385,0.740615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19120896 19120897 rs6682882 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2765.000000,2243.000000, 0.552117,0.447883, maf-5-some-pop,maf-5-all-pops 730 chr1 19121755 19121756 rs7539659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4077.000000,931.000000, 0.814097,0.185903, maf-5-some-pop,maf-5-all-pops,genotype-conflict 730 chr1 19123032 19123033 rs12566799 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop,maf-5-all-pops 730 chr1 19126198 19126199 rs11261074 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 767.000000,4241.000000, 0.153155,0.846845, maf-5-some-pop,maf-5-all-pops 730 chr1 19131079 19131080 rs7418296 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 641.000000,4367.000000, 0.127995,0.872005, maf-5-some-pop 730 chr1 19131154 19131155 rs12061114 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop 730 chr1 19134259 19134260 rs7411058 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 3875.000000,1133.000000, 0.773762,0.226238, maf-5-some-pop 731 chr1 19138531 19138532 rs7512463 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 563.000000,4445.000000, 0.112420,0.887580, maf-5-some-pop 731 chr1 19139516 19139517 rs12063142 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,microattr-tpa 731 chr1 19140201 19140202 rs6603914 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4711.000000,297.000000, 0.940695,0.059305, maf-5-some-pop,maf-5-all-pops,genotype-conflict 731 chr1 19142951 19142952 rs4920545 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2440.000000,2568.000000, 0.487220,0.512780, maf-5-some-pop,maf-5-all-pops,genotype-conflict 731 chr1 19143481 19143482 rs6704438 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3178.000000,1830.000000, 0.634585,0.365415, maf-5-some-pop,maf-5-all-pops 731 chr1 19145136 19145137 rs12028479 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,genotype-conflict 731 chr1 19146432 19146433 rs10158073 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, maf-5-some-pop,maf-5-all-pops 731 chr1 19153968 19153969 rs6684577 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2520.000000,2488.000000, 0.503195,0.496805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 731 chr1 19154064 19154065 rs6674964 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1656.000000,3352.000000, 0.330671,0.669329, maf-5-some-pop,maf-5-all-pops 731 chr1 19155968 19155969 rs6691420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3279.000000,1729.000000, 0.654752,0.345248, maf-5-some-pop,maf-5-all-pops 731 chr1 19156322 19156323 rs12565195 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 3079.000000,1929.000000, 0.614816,0.385184, maf-5-some-pop,maf-5-all-pops 731 chr1 19160159 19160160 rs4920549 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1921.000000,3087.000000, 0.383586,0.616414, maf-5-some-pop,maf-5-all-pops 731 chr1 19160235 19160236 rs4920550 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop 731 chr1 19164276 19164277 rs12034609 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3197.000000,1811.000000, 0.638379,0.361621, maf-5-some-pop,maf-5-all-pops 731 chr1 19166242 19166243 rs12075191 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop 731 chr1 19167370 19167371 rs3935570 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,genotype-conflict 731 chr1 19170077 19170078 rs7534618 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1546.000000,3462.000000, 0.308706,0.691294, maf-5-some-pop,maf-5-all-pops 731 chr1 19173613 19173614 rs7513755 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 827.000000,4181.000000, 0.165136,0.834864, maf-5-some-pop,maf-5-all-pops 731 chr1 19176666 19176667 rs6603923 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 3687.000000,1321.000000, 0.736222,0.263778, maf-5-some-pop,maf-5-all-pops,genotype-conflict 731 chr1 19179103 19179104 rs4920564 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop 731 chr1 19186128 19186129 rs9701796 0 + G G C/G genomic single unknown 0 0 missense exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop,maf-5-all-pops 731 chr1 19198894 19198895 rs9117 0 - A A C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 4456.000000,552.000000,552.000000,4456.000000, 0.444888,0.055112,0.055112,0.444888, maf-5-some-pop 731 chr1 19203996 19203997 rs2230705 0 - C C C/G genomic single unknown 0 0 coding-synon exact 1 31 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,PJP,SEATTLESEQ,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,WICVAR,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 731 chr1 19213667 19213668 rs9426721 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop 731 chr1 19214498 19214499 rs9426726 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 731 chr1 19215417 19215418 rs4912075 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3006.000000,2002.000000, 0.600240,0.399760, maf-5-some-pop,maf-5-all-pops 731 chr1 19221841 19221842 rs16862344 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop 731 chr1 19230262 19230263 rs4912044 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop 731 chr1 19237274 19237275 rs2024725 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,T, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 731 chr1 19237389 19237390 rs16862359 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 731 chr1 19239514 19239515 rs4911977 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 731 chr1 19241903 19241904 rs16862370 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop,maf-5-all-pops 731 chr1 19249115 19249116 rs4603153 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop,maf-5-all-pops 731 chr1 19258374 19258375 rs17387963 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1417.000000,3591.000000, 0.282947,0.717053, maf-5-some-pop,genotype-conflict 731 chr1 19258722 19258723 rs16862387 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2264.000000,2744.000000, 0.452077,0.547923, maf-5-some-pop,maf-5-all-pops 731 chr1 19263782 19263783 rs4912087 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 731 chr1 19266147 19266148 rs17388046 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1506.000000,3502.000000, 0.300719,0.699281, maf-5-some-pop,maf-5-all-pops,genotype-conflict 732 chr1 19273804 19273805 rs16862393 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 732 chr1 19274770 19274771 rs4912006 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 886.000000,4122.000000, 0.176917,0.823083, maf-5-some-pop,genotype-conflict 732 chr1 19276044 19276045 rs4912111 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4062.000000,946.000000, 0.811102,0.188898, maf-5-some-pop 732 chr1 19276934 19276935 rs4912117 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop,genotype-conflict 732 chr1 19284563 19284564 rs4912013 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2784.000000,2224.000000, 0.555911,0.444089, maf-5-some-pop,maf-5-all-pops 732 chr1 19296890 19296891 rs16862413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 732 chr1 19321461 19321462 rs17384449 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2253.000000,2755.000000, 0.449880,0.550120, maf-5-some-pop,maf-5-all-pops 732 chr1 19321494 19321495 rs16862426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,microattr-tpa 732 chr1 19322988 19322989 rs1925703 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1657.000000,3351.000000,3351.000000,1657.000000, 0.165435,0.334565,0.334565,0.165435, maf-5-some-pop,maf-5-all-pops 732 chr1 19323014 19323015 rs1925702 0 - T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 732 chr1 19323049 19323050 rs6690097 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 732 chr1 19323332 19323333 rs6659084 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 732 chr1 19331464 19331465 rs4912029 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 G,T, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop 732 chr1 19332075 19332076 rs7523455 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 732 chr1 19332773 19332774 rs16862452 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1304.000000,3704.000000, 0.260383,0.739617, maf-5-some-pop,maf-5-all-pops 732 chr1 19333582 19333583 rs7529889 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2419.000000,2589.000000, 0.483027,0.516973, maf-5-some-pop,maf-5-all-pops 732 chr1 19334298 19334299 rs9426629 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2416.000000,2592.000000, 0.482428,0.517572, maf-5-some-pop,maf-5-all-pops 732 chr1 19339069 19339070 rs6426630 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 529.000000,4479.000000, 0.105631,0.894369, maf-5-some-pop 732 chr1 19343295 19343296 rs2313062 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1194.000000,3814.000000,3814.000000,1194.000000, 0.119209,0.380791,0.380791,0.119209, maf-5-some-pop,maf-5-all-pops 732 chr1 19358014 19358015 rs912845 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4369.000000,639.000000,639.000000,4369.000000, 0.436202,0.063798,0.063798,0.436202, maf-5-some-pop 732 chr1 19365345 19365346 rs1570857 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3404.000000,1604.000000, 0.679712,0.320288, maf-5-some-pop,maf-5-all-pops,genotype-conflict 732 chr1 19365551 19365552 rs10492996 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 3460.000000,1548.000000, 0.690895,0.309105, maf-5-some-pop 732 chr1 19370987 19370988 rs17389189 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,genotype-conflict 732 chr1 19373587 19373588 rs12096703 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 732 chr1 19373604 19373605 rs7537573 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3006.000000,2002.000000, 0.600240,0.399760, maf-5-some-pop,maf-5-all-pops 732 chr1 19374451 19374452 rs16862478 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop,genotype-conflict 732 chr1 19374463 19374464 rs16862480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,genotype-conflict 732 chr1 19376016 19376017 rs4912036 0 + A A A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1623.000000,3385.000000, 0.324081,0.675919, maf-5-some-pop,maf-5-all-pops,genotype-conflict 732 chr1 19379846 19379847 rs12048640 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop 732 chr1 19391107 19391108 rs12060125 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 1957.000000,3051.000000, 0.390775,0.609225, maf-5-some-pop,maf-5-all-pops 732 chr1 19391131 19391132 rs12118553 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop 732 chr1 19391176 19391177 rs10916867 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop 732 chr1 19393032 19393033 rs10753508 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1123.000000,3885.000000, 0.224241,0.775759, maf-5-some-pop,maf-5-all-pops 732 chr1 19393709 19393710 rs12745238 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 1675.000000,3333.000000, 0.334465,0.665535, maf-5-some-pop,maf-5-all-pops 732 chr1 19396735 19396736 rs12738339 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop,maf-5-all-pops 733 chr1 19400625 19400626 rs3748762 0 - T T A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 4769.000000,239.000000,239.000000,4769.000000, 0.476138,0.023862,0.023862,0.476138, maf-5-some-pop 733 chr1 19400690 19400691 rs3748761 0 - C C C/G genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 733 chr1 19401404 19401405 rs2281748 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1939.000000,3069.000000,3069.000000,1939.000000, 0.193590,0.306410,0.306410,0.193590, maf-5-some-pop,maf-5-all-pops 733 chr1 19401967 19401968 rs1886024 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 141.000000,4867.000000,4867.000000,141.000000, 0.014077,0.485923,0.485923,0.014077, maf-5-some-pop 733 chr1 19402389 19402390 rs10158468 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,maf-5-all-pops 733 chr1 19403833 19403834 rs10158647 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WUGSC_SSAHASNP, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 733 chr1 19404543 19404544 rs2274010 0 - C C A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,PERLEGEN,YUSUKE, 4 A,C,G,T, 4.000000,5004.000000,5004.000000,4.000000, 0.000399,0.499601,0.499601,0.000399, genotype-conflict 733 chr1 19405236 19405237 rs2146866 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1925.000000,3083.000000,3083.000000,1925.000000, 0.192192,0.307808,0.307808,0.192192, maf-5-some-pop,maf-5-all-pops 733 chr1 19407770 19407771 rs16862514 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop 733 chr1 19408134 19408135 rs12164496 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 733 chr1 19408329 19408330 rs16862515 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 733 chr1 19408379 19408380 rs12164540 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1875.000000,3133.000000, 0.374401,0.625599, maf-5-some-pop,genotype-conflict 733 chr1 19408649 19408650 rs11802186 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4444.000000,564.000000, 0.887380,0.112620, maf-5-some-pop 733 chr1 19411499 19411500 rs2313508 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 733 chr1 19413925 19413926 rs12075030 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1872.000000,3136.000000, 0.373802,0.626198, maf-5-some-pop,maf-5-all-pops 733 chr1 19414813 19414814 rs732725 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 733 chr1 19415303 19415304 rs1043899 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2964.000000,2044.000000,2044.000000,2964.000000, 0.295927,0.204073,0.204073,0.295927, maf-5-some-pop,maf-5-all-pops 733 chr1 19415438 19415439 rs16862517 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 733 chr1 19416778 19416779 rs16862520 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 733 chr1 19431879 19431880 rs16862539 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 733 chr1 19433611 19433612 rs6674453 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,T, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,genotype-conflict 733 chr1 19433748 19433749 rs17390041 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop 733 chr1 19435431 19435432 rs4912048 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,maf-5-all-pops,genotype-conflict 733 chr1 19435673 19435674 rs16862542 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop 733 chr1 19437184 19437185 rs10916957 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop,genotype-conflict 733 chr1 19442507 19442508 rs4911974 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1449.000000,3559.000000, 0.289337,0.710663, maf-5-some-pop,maf-5-all-pops,genotype-conflict 733 chr1 19443951 19443952 rs16862547 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 733 chr1 19453364 19453365 rs16862558 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop 733 chr1 19457256 19457257 rs7547104 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3205.000000,1803.000000, 0.639976,0.360024, maf-5-some-pop,maf-5-all-pops 733 chr1 19461600 19461601 rs6426714 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1719.000000,3289.000000, 0.343251,0.656749, maf-5-some-pop,maf-5-all-pops,genotype-conflict 733 chr1 19464772 19464773 rs2274001 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3480.000000,1528.000000,1528.000000,3480.000000, 0.347444,0.152556,0.152556,0.347444, maf-5-some-pop,maf-5-all-pops 733 chr1 19470661 19470662 rs4912050 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 C,T, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop 733 chr1 19476580 19476581 rs942182 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 429.000000,4579.000000,4579.000000,429.000000, 0.042831,0.457169,0.457169,0.042831, maf-5-some-pop 733 chr1 19476648 19476649 rs2296107 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1680.000000,3328.000000, 0.335463,0.664537, maf-5-some-pop 733 chr1 19480828 19480829 rs6691238 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2586.000000,2422.000000, 0.516374,0.483626, maf-5-some-pop,maf-5-all-pops 733 chr1 19487370 19487371 rs16862575 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,genotype-conflict 733 chr1 19487655 19487656 rs3748759 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2192.000000,2816.000000,2816.000000,2192.000000, 0.218850,0.281150,0.281150,0.218850, maf-5-some-pop,maf-5-all-pops 733 chr1 19488838 19488839 rs1999967 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3567.000000,1441.000000,1441.000000,3567.000000, 0.356130,0.143870,0.143870,0.356130, maf-5-some-pop,maf-5-all-pops 733 chr1 19492706 19492707 rs6663221 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2476.000000,2532.000000, 0.494409,0.505591, maf-5-some-pop,maf-5-all-pops 733 chr1 19499119 19499120 rs10917061 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,maf-5-all-pops 733 chr1 19499559 19499560 rs16862578 0 + T T C/T genomic single unknown 0 0 missense exact 1 23 1000GENOMES,ABI,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,TISHKOFF, 2 C,T, 694.000000,4314.000000, 0.138578,0.861422, maf-5-some-pop,genotype-conflict 733 chr1 19500327 19500328 rs870482 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 423.000000,4585.000000,4585.000000,423.000000, 0.042232,0.457768,0.457768,0.042232, maf-5-some-pop 733 chr1 19512515 19512516 rs841371 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 733 chr1 19525484 19525485 rs16862588 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 733 chr1 19525584 19525585 rs841374 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3446.000000,1562.000000, 0.688099,0.311901, maf-5-some-pop,maf-5-all-pops 733 chr1 19526362 19526363 rs12122656 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 734 chr1 19548980 19548981 rs12405382 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3354.000000,1654.000000, 0.669728,0.330272, maf-5-some-pop,maf-5-all-pops 734 chr1 19557712 19557713 rs2275403 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 3345.000000,1663.000000, 0.667931,0.332069, maf-5-some-pop,maf-5-all-pops 734 chr1 19559962 19559963 rs10917240 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4035.000000,973.000000, 0.805711,0.194289, maf-5-some-pop,maf-5-all-pops 734 chr1 19563899 19563900 rs16862632 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop 734 chr1 19564036 19564037 rs710879 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 959.000000,4049.000000,4049.000000,959.000000, 0.095747,0.404253,0.404253,0.095747, maf-5-some-pop,maf-5-all-pops,genotype-conflict 734 chr1 19564048 19564049 rs710880 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 292.000000,4716.000000,4716.000000,292.000000, 0.029153,0.470847,0.470847,0.029153, maf-5-some-pop,genotype-conflict 734 chr1 19564201 19564202 rs710882 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 974.000000,4034.000000,4034.000000,974.000000, 0.097244,0.402756,0.402756,0.097244, maf-5-some-pop,maf-5-all-pops 734 chr1 19566295 19566296 rs2273046 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2881.000000,2127.000000,2127.000000,2881.000000, 0.287640,0.212360,0.212360,0.287640, maf-5-some-pop,maf-5-all-pops 734 chr1 19569782 19569783 rs12139436 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,C, 544.000000,4464.000000, 0.108626,0.891374, maf-5-some-pop 734 chr1 19569903 19569904 rs710883 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK, 4 A,C,G,T, 122.000000,4886.000000,4886.000000,122.000000, 0.012181,0.487819,0.487819,0.012181, maf-5-some-pop 734 chr1 19570145 19570146 rs6661253 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 13 1000GENOMES,AFFY,APPLERA_GI,BCM_SSAHASNP,CLINSEQ_SNP,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop 734 chr1 19571632 19571633 rs9426799 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 734 chr1 19576034 19576035 rs10917275 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1276.000000,3732.000000, 0.254792,0.745208, maf-5-some-pop,maf-5-all-pops,genotype-conflict 734 chr1 19582337 19582338 rs6694099 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop 734 chr1 19583329 19583330 rs2073102 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 734 chr1 19584003 19584004 rs1042380 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 21 1000GENOMES,AFFY,APPLERA_GI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,maf-5-all-pops,genotype-conflict 734 chr1 19585206 19585207 rs2294939 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,APPLERA_GI,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SSMP,YUSUKE, 4 A,C,G,T, 547.000000,4461.000000,4461.000000,547.000000, 0.054613,0.445387,0.445387,0.054613, maf-5-some-pop,maf-5-all-pops 734 chr1 19586570 19586571 rs1063986 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 577.000000,4431.000000, 0.115216,0.884784, maf-5-some-pop 734 chr1 19586966 19586967 rs4912058 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4501.000000,507.000000, 0.898762,0.101238, maf-5-some-pop,genotype-conflict 734 chr1 19604100 19604101 rs10917331 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 848.000000,4160.000000, 0.169329,0.830671, maf-5-some-pop,maf-5-all-pops 734 chr1 19604373 19604374 rs4483432 0 + T T A/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4069.000000,939.000000, 0.812500,0.187500, maf-5-some-pop,maf-5-all-pops,genotype-conflict 734 chr1 19608768 19608769 rs1738026 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 325.000000,4683.000000,4683.000000,325.000000, 0.032448,0.467552,0.467552,0.032448, maf-5-some-pop 734 chr1 19618600 19618601 rs9729157 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop,maf-5-all-pops 734 chr1 19622269 19622270 rs12133034 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop 734 chr1 19636040 19636041 rs11808495 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 952.000000,4056.000000, 0.190096,0.809904, maf-5-some-pop 734 chr1 19638308 19638309 rs2227295 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GENAISSANCE,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1452.000000,3556.000000,3556.000000,1452.000000, 0.144968,0.355032,0.355032,0.144968, maf-5-some-pop,maf-5-all-pops 734 chr1 19640675 19640676 rs859218 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1572.000000,3436.000000,3436.000000,1572.000000, 0.156949,0.343051,0.343051,0.156949, maf-5-some-pop,maf-5-all-pops 734 chr1 19640697 19640698 rs859217 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 139.000000,4869.000000,4869.000000,139.000000, 0.013878,0.486122,0.486122,0.013878, maf-5-some-pop,maf-5-all-pops 734 chr1 19645354 19645355 rs12146076 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3643.000000,1365.000000, 0.727436,0.272564, maf-5-some-pop,maf-5-all-pops 734 chr1 19645672 19645673 rs4912069 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1331.000000,3677.000000, 0.265775,0.734225, maf-5-some-pop,maf-5-all-pops,genotype-conflict 734 chr1 19646764 19646765 rs2473807 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2913.000000,2095.000000,2095.000000,2913.000000, 0.290835,0.209165,0.209165,0.290835, maf-5-some-pop,maf-5-all-pops,genotype-conflict 734 chr1 19658505 19658506 rs3748756 0 - C C A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 884.000000,4124.000000,4124.000000,884.000000, 0.088259,0.411741,0.411741,0.088259, maf-5-some-pop,maf-5-all-pops 734 chr1 19660492 19660493 rs214298 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2740.000000,2268.000000,2268.000000,2740.000000, 0.273562,0.226438,0.226438,0.273562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19660869 19660870 rs214297 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 2740.000000,2268.000000,2268.000000,2740.000000, 0.273562,0.226438,0.226438,0.273562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19662104 19662105 rs169956 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 2285.000000,2723.000000, 0.456270,0.543730, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19663082 19663083 rs214322 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3471.000000,1537.000000, 0.693091,0.306909, maf-5-some-pop 735 chr1 19667480 19667481 rs2268810 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 4092.000000,916.000000,916.000000,4092.000000, 0.408546,0.091454,0.091454,0.408546, maf-5-some-pop,maf-5-all-pops 735 chr1 19667551 19667552 rs2268809 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1186.000000,3822.000000,3822.000000,1186.000000, 0.118411,0.381589,0.381589,0.118411, maf-5-some-pop,genotype-conflict 735 chr1 19670446 19670447 rs3790774 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 187.000000,4821.000000,4821.000000,187.000000, 0.018670,0.481330,0.481330,0.018670, maf-5-some-pop,genotype-conflict 735 chr1 19675560 19675561 rs11805045 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4127.000000,881.000000, 0.824081,0.175919, maf-5-some-pop 735 chr1 19676425 19676426 rs2268807 0 - T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 735 chr1 19676513 19676514 rs12564715 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop,genotype-conflict 735 chr1 19677087 19677088 rs214331 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1187.000000,3821.000000, 0.237021,0.762979, maf-5-some-pop,genotype-conflict 735 chr1 19679872 19679873 rs214338 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 G,T, 2887.000000,2121.000000, 0.576478,0.423522, maf-5-some-pop,maf-5-all-pops 735 chr1 19680423 19680424 rs214340 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3774.000000,1234.000000, 0.753594,0.246406, maf-5-some-pop,maf-5-all-pops 735 chr1 19680531 19680532 rs12751502 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19680543 19680544 rs17477654 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop 735 chr1 19680557 19680558 rs214341 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2598.000000,2410.000000, 0.518770,0.481230, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19689278 19689279 rs736713 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 557.000000,4451.000000,4451.000000,557.000000, 0.055611,0.444389,0.444389,0.055611, maf-5-some-pop 735 chr1 19689855 19689856 rs41423949 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,AFFY_GWHS,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 837.000000,4171.000000,4171.000000,837.000000, 0.083566,0.416434,0.416434,0.083566, maf-5-some-pop 735 chr1 19691753 19691754 rs191942 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1837.000000,3171.000000, 0.366813,0.633187, maf-5-some-pop,maf-5-all-pops 735 chr1 19693127 19693128 rs214321 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2394.000000,2614.000000,2614.000000,2394.000000, 0.239018,0.260982,0.260982,0.239018, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19693649 19693650 rs10917429 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4449.000000,559.000000, 0.888379,0.111621, maf-5-some-pop,genotype-conflict 735 chr1 19697128 19697129 rs6690981 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop 735 chr1 19697377 19697378 rs937608 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1793.000000,3215.000000,3215.000000,1793.000000, 0.179014,0.320986,0.320986,0.179014, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19697914 19697915 rs10753558 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1438.000000,3570.000000, 0.287141,0.712859, maf-5-some-pop,maf-5-all-pops 735 chr1 19698025 19698026 rs10753559 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3567.000000,1441.000000, 0.712260,0.287740, maf-5-some-pop,maf-5-all-pops 735 chr1 19698823 19698824 rs3790766 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1609.000000,3399.000000,3399.000000,1609.000000, 0.160643,0.339357,0.339357,0.160643, maf-5-some-pop,maf-5-all-pops 735 chr1 19698860 19698861 rs10917432 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 735 chr1 19699345 19699346 rs884075 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop,genotype-conflict 735 chr1 19702372 19702373 rs3790761 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4831.000000,177.000000,177.000000,4831.000000, 0.482328,0.017672,0.017672,0.482328, maf-5-some-pop,genotype-conflict 735 chr1 19706996 19706997 rs11586038 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,KRIBB_YJKIM, 2 C,T, 4967.000000,41.000000, 0.991813,0.008187, 735 chr1 19707301 19707302 rs10917434 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 735 chr1 19711748 19711749 rs10917438 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop,maf-5-all-pops 735 chr1 19713003 19713004 rs1472566 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3197.000000,1811.000000, 0.638379,0.361621, maf-5-some-pop,maf-5-all-pops 735 chr1 19718823 19718824 rs7667 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1578.000000,3430.000000,3430.000000,1578.000000, 0.157548,0.342452,0.342452,0.157548, maf-5-some-pop,maf-5-all-pops,microattr-tpa 735 chr1 19720091 19720092 rs7529705 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1691.000000,3317.000000, 0.337660,0.662340, maf-5-some-pop,maf-5-all-pops 735 chr1 19721547 19721548 rs4912084 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1580.000000,3428.000000, 0.315495,0.684505, maf-5-some-pop,maf-5-all-pops 735 chr1 19723847 19723848 rs10917442 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop,maf-5-all-pops 735 chr1 19724078 19724079 rs10917443 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1148.000000,3860.000000, 0.229233,0.770767, maf-5-some-pop 735 chr1 19724099 19724100 rs17394376 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 803.000000,4205.000000, 0.160343,0.839657, maf-5-some-pop 735 chr1 19724479 19724480 rs4911988 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop 735 chr1 19727061 19727062 rs10799809 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1850.000000,3158.000000, 0.369409,0.630591, maf-5-some-pop,maf-5-all-pops 735 chr1 19727144 19727145 rs6698682 0 + T T G/T genomic single unknown 0 0 intron,ncRNA exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3338.000000,1670.000000, 0.666534,0.333466, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19727742 19727743 rs4911989 0 + C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3856.000000,1152.000000, 0.769968,0.230032, maf-5-some-pop 735 chr1 19727800 19727801 rs1566532 0 - C C A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1940.000000,3068.000000,3068.000000,1940.000000, 0.193690,0.306310,0.306310,0.193690, maf-5-some-pop,maf-5-all-pops 735 chr1 19729086 19729087 rs4912085 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3315.000000,1693.000000, 0.661941,0.338059, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19730345 19730346 rs7515937 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop 735 chr1 19730926 19730927 rs12403041 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4031.000000,977.000000, 0.804912,0.195088, maf-5-some-pop,maf-5-all-pops 735 chr1 19733960 19733961 rs881248 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3673.000000,1335.000000,1335.000000,3673.000000, 0.366713,0.133287,0.133287,0.366713, maf-5-some-pop,maf-5-all-pops 735 chr1 19734008 19734009 rs7512231 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 735 chr1 19736394 19736395 rs9287046 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 1334.000000,3674.000000, 0.266374,0.733626, maf-5-some-pop 735 chr1 19738189 19738190 rs4244002 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 3332.000000,1676.000000, 0.665335,0.334665, maf-5-some-pop,maf-5-all-pops 735 chr1 19739155 19739156 rs6426800 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3450.000000,1558.000000, 0.688898,0.311102, maf-5-some-pop,maf-5-all-pops 735 chr1 19739309 19739310 rs12062411 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,genotype-conflict 735 chr1 19740173 19740174 rs12030205 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop,maf-5-all-pops 735 chr1 19740822 19740823 rs6662273 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 735 chr1 19742139 19742140 rs17398869 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,genotype-conflict 735 chr1 19746598 19746599 rs3790759 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3908.000000,1100.000000,1100.000000,3908.000000, 0.390176,0.109824,0.109824,0.390176, maf-5-some-pop,maf-5-all-pops 735 chr1 19748143 19748144 rs9887876 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 735 chr1 19749401 19749402 rs4912090 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1130.000000,3878.000000, 0.225639,0.774361, maf-5-some-pop,maf-5-all-pops 735 chr1 19749849 19749850 rs17398986 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop 735 chr1 19749893 19749894 rs12033437 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3480.000000,1528.000000, 0.694888,0.305112, maf-5-some-pop,maf-5-all-pops 735 chr1 19753846 19753847 rs11583187 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 735 chr1 19759834 19759835 rs11585820 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3887.000000,1121.000000, 0.776158,0.223842, maf-5-some-pop,maf-5-all-pops 735 chr1 19762465 19762466 rs4912094 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop,maf-5-all-pops 735 chr1 19763378 19763379 rs12137160 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3971.000000,1037.000000, 0.792931,0.207069, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19763395 19763396 rs12137162 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1038.000000,3970.000000, 0.207268,0.792732, maf-5-some-pop,maf-5-all-pops 735 chr1 19765003 19765004 rs4911995 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19765204 19765205 rs4911996 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 924.000000,4084.000000, 0.184505,0.815495, maf-5-some-pop,genotype-conflict 735 chr1 19765517 19765518 rs12045440 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1446.000000,3562.000000, 0.288738,0.711262, maf-5-some-pop,maf-5-all-pops,microattr-tpa 735 chr1 19765668 19765669 rs4911997 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2195.000000,2813.000000, 0.438299,0.561701, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19769240 19769241 rs9651016 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1044.000000,3964.000000, 0.208466,0.791534, maf-5-some-pop,maf-5-all-pops 735 chr1 19769370 19769371 rs10492997 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2879.000000,2129.000000, 0.574880,0.425120, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19772133 19772134 rs904965 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2802.000000,2206.000000, 0.559505,0.440495, maf-5-some-pop,maf-5-all-pops 735 chr1 19772846 19772847 rs10492998 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop 735 chr1 19773432 19773433 rs1546263 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 736.000000,4272.000000, 0.146965,0.853035, maf-5-some-pop 735 chr1 19775491 19775492 rs10442635 0 + A A A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3827.000000,1181.000000, 0.764177,0.235823, maf-5-some-pop,maf-5-all-pops 735 chr1 19775565 19775566 rs1546264 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop,maf-5-all-pops 735 chr1 19775810 19775811 rs10753562 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2962.000000,2046.000000, 0.591454,0.408546, maf-5-some-pop,maf-5-all-pops,genotype-conflict 735 chr1 19779052 19779053 rs11589517 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop,maf-5-all-pops 735 chr1 19779672 19779673 rs11590840 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1220.000000,3788.000000, 0.243610,0.756390, maf-5-some-pop,maf-5-all-pops 735 chr1 19783645 19783646 rs1340422 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4507.000000,501.000000,501.000000,4507.000000, 0.449980,0.050020,0.050020,0.449980, maf-5-some-pop 736 chr1 19791955 19791956 rs2314147 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3213.000000,1795.000000,1795.000000,3213.000000, 0.320787,0.179213,0.179213,0.320787, maf-5-some-pop,genotype-conflict 736 chr1 19792526 19792527 rs12066114 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3566.000000,1442.000000, 0.712061,0.287939, maf-5-some-pop,maf-5-all-pops,genotype-conflict 736 chr1 19793983 19793984 rs999974 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3201.000000,1807.000000, 0.639177,0.360823, maf-5-some-pop,maf-5-all-pops 736 chr1 19794186 19794187 rs1542875 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3129.000000,1879.000000,1879.000000,3129.000000, 0.312400,0.187600,0.187600,0.312400, maf-5-some-pop,maf-5-all-pops 736 chr1 19796705 19796706 rs7528035 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 736 chr1 19797247 19797248 rs1002365 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2845.000000,2163.000000,2163.000000,2845.000000, 0.284046,0.215954,0.215954,0.284046, maf-5-some-pop,maf-5-all-pops,genotype-conflict 736 chr1 19799628 19799629 rs4912104 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,C, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,genotype-conflict 736 chr1 19800953 19800954 rs4912105 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 638.000000,4370.000000, 0.127396,0.872604, maf-5-some-pop 736 chr1 19801267 19801268 rs3813986 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4576.000000,432.000000, 0.913738,0.086262, maf-5-some-pop,genotype-conflict 736 chr1 19802181 19802182 rs1500968 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,G, 1071.000000,3937.000000, 0.213858,0.786142, maf-5-some-pop 736 chr1 19803246 19803247 rs12067162 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop 736 chr1 19805996 19805997 rs10799817 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2418.000000,2590.000000, 0.482827,0.517173, maf-5-some-pop,maf-5-all-pops 736 chr1 19806258 19806259 rs924519 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2430.000000,2578.000000, 0.485224,0.514776, maf-5-some-pop,maf-5-all-pops 736 chr1 19806691 19806692 rs10917459 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1180.000000,3828.000000, 0.235623,0.764377, maf-5-some-pop 736 chr1 19806849 19806850 rs6662017 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 736 chr1 19808827 19808828 rs4912106 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop 736 chr1 19809001 19809002 rs6669110 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3154.000000,1854.000000, 0.629792,0.370208, maf-5-some-pop,maf-5-all-pops 736 chr1 19809065 19809066 rs6703356 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1836.000000,3172.000000, 0.366613,0.633387, maf-5-some-pop,maf-5-all-pops 736 chr1 19809384 19809385 rs6669496 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1957.000000,3051.000000, 0.390775,0.609225, maf-5-some-pop,maf-5-all-pops 736 chr1 19809757 19809758 rs10917461 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1163.000000,3845.000000, 0.232228,0.767772, maf-5-some-pop,maf-5-all-pops 736 chr1 19810645 19810646 rs11802524 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF, 2 A,C, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop 736 chr1 19823328 19823329 rs873095 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,maf-5-all-pops 736 chr1 19824007 19824008 rs2314146 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2060.000000,2948.000000, 0.411342,0.588658, maf-5-some-pop,maf-5-all-pops 736 chr1 19831938 19831939 rs11807599 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3942.000000,1066.000000, 0.787141,0.212859, maf-5-some-pop,maf-5-all-pops 736 chr1 19832566 19832567 rs12084204 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3199.000000,1809.000000, 0.638778,0.361222, maf-5-some-pop,maf-5-all-pops 736 chr1 19839138 19839139 rs4130336 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4222.000000,786.000000, 0.843051,0.156949, maf-5-some-pop 736 chr1 19843353 19843354 rs10917468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops,microattr-tpa 736 chr1 19843575 19843576 rs10917469 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4154.000000,854.000000, 0.829473,0.170527, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia 736 chr1 19851030 19851031 rs12726742 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 1052.000000,3956.000000, 0.210064,0.789936, maf-5-some-pop 736 chr1 19858212 19858213 rs7553353 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2645.000000,2363.000000, 0.528155,0.471845, maf-5-some-pop,maf-5-all-pops 736 chr1 19858270 19858271 rs6426809 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1413.000000,3595.000000, 0.282149,0.717851, maf-5-some-pop,maf-5-all-pops,genotype-conflict 736 chr1 19860696 19860697 rs10917475 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop,maf-5-all-pops 736 chr1 19860839 19860840 rs10917476 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,genotype-conflict 736 chr1 19862410 19862411 rs12123337 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,genotype-conflict 736 chr1 19872789 19872790 rs4504911 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2326.000000,2682.000000, 0.464457,0.535543, maf-5-some-pop 736 chr1 19876024 19876025 rs4508039 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2355.000000,2653.000000, 0.470248,0.529752, maf-5-some-pop,maf-5-all-pops 736 chr1 19876437 19876438 rs4912122 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2681.000000,2327.000000, 0.535343,0.464657, maf-5-some-pop,genotype-conflict 736 chr1 19886479 19886480 rs10753566 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3947.000000,1061.000000, 0.788139,0.211861, maf-5-some-pop,maf-5-all-pops 736 chr1 19888653 19888654 rs10753569 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1061.000000,3947.000000, 0.211861,0.788139, maf-5-some-pop,maf-5-all-pops 736 chr1 19889921 19889922 rs1572824 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4037.000000,971.000000,971.000000,4037.000000, 0.403055,0.096945,0.096945,0.403055, maf-5-some-pop,maf-5-all-pops 736 chr1 19892799 19892800 rs10917497 0 + G G C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 3 C,G,T, 4564.000000,442.000000,2.000000, 0.911342,0.088259,0.000399, maf-5-some-pop,maf-5-all-pops 736 chr1 19893739 19893740 rs7517326 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop,genotype-conflict 736 chr1 19896219 19896220 rs3133373 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4584.000000,424.000000,424.000000,4584.000000, 0.457668,0.042332,0.042332,0.457668, maf-5-some-pop,genotype-conflict 736 chr1 19897941 19897942 rs12133620 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 736 chr1 19899536 19899537 rs2792029 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 531.000000,4477.000000, 0.106030,0.893970, maf-5-some-pop,genotype-conflict 736 chr1 19905645 19905646 rs717536 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 746.000000,4262.000000, 0.148962,0.851038, maf-5-some-pop,maf-5-all-pops 736 chr1 19921746 19921747 rs2745217 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1531.000000,3477.000000, 0.305711,0.694289, maf-5-some-pop 737 chr1 19927552 19927553 rs860847 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,C, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop,genotype-conflict 737 chr1 19927719 19927720 rs840265 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,TISHKOFF, 4 A,C,G,T, 4400.000000,608.000000,608.000000,4400.000000, 0.439297,0.060703,0.060703,0.439297, maf-5-some-pop,genotype-conflict 737 chr1 19928603 19928604 rs840264 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,genotype-conflict 737 chr1 19928740 19928741 rs41510945 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,ILLUMINA-UK, 4 A,C,G,T, 56.000000,4952.000000,4952.000000,56.000000, 0.005591,0.494409,0.494409,0.005591, maf-5-some-pop 737 chr1 19930251 19930252 rs1770483 0 - T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 737 chr1 19930638 19930639 rs2745220 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3284.000000,1724.000000, 0.655751,0.344249, maf-5-some-pop,maf-5-all-pops 737 chr1 19931028 19931029 rs2745221 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,TISHKOFF, 2 G,T, 4406.000000,602.000000, 0.879792,0.120208, maf-5-some-pop 737 chr1 19939448 19939449 rs1737422 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 737 chr1 19942001 19942002 rs7518758 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 737 chr1 19942930 19942931 rs12073300 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4250.000000,758.000000, 0.848642,0.151358, maf-5-some-pop,genotype-conflict 737 chr1 19943822 19943823 rs2294629 0 + C C A/C genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,AFFY,BGI,CGAP-GAI,COMPLETE_GENOMICS,CORNELL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,YUSUKE, 2 A,C, 1278.000000,3730.000000, 0.255192,0.744808, maf-5-some-pop,genotype-conflict 737 chr1 19945856 19945857 rs7531524 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 737 chr1 19951681 19951682 rs12161406 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 737 chr1 19956373 19956374 rs2792059 0 + T T G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP,YUSUKE, 2 G,T, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop,genotype-conflict 737 chr1 19958728 19958729 rs2792061 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 737 chr1 19960068 19960069 rs2792063 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop 737 chr1 19962873 19962874 rs7523079 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1962.000000,3046.000000, 0.391773,0.608227, maf-5-some-pop,maf-5-all-pops 737 chr1 19963046 19963047 rs7523192 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops 737 chr1 19973357 19973358 rs7522389 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3040.000000,1968.000000, 0.607029,0.392971, maf-5-some-pop,maf-5-all-pops 737 chr1 19973919 19973920 rs2854108 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 A,G, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop 737 chr1 19976781 19976782 rs1115163 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2953.000000,2055.000000, 0.589657,0.410343, maf-5-some-pop,maf-5-all-pops 737 chr1 19988893 19988894 rs1977101 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4349.000000,659.000000,659.000000,4349.000000, 0.434205,0.065795,0.065795,0.434205, maf-5-some-pop,genotype-conflict 737 chr1 19995490 19995491 rs6658108 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 881.000000,4127.000000, 0.175919,0.824081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 737 chr1 19996192 19996193 rs2872594 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 1644.000000,3364.000000, 0.328275,0.671725, maf-5-some-pop,maf-5-all-pops 737 chr1 19996231 19996232 rs3790756 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4254.000000,754.000000, 0.849441,0.150559, maf-5-some-pop,maf-5-all-pops 737 chr1 19997907 19997908 rs3790757 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,genotype-conflict 737 chr1 20002517 20002518 rs9659997 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2736.000000,2272.000000, 0.546326,0.453674, maf-5-some-pop,maf-5-all-pops 737 chr1 20008879 20008880 rs9064 0 - G G A/C genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2985.000000,2023.000000,2023.000000,2985.000000, 0.298023,0.201977,0.201977,0.298023, maf-5-some-pop,maf-5-all-pops,genotype-conflict 737 chr1 20011711 20011712 rs4912144 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3184.000000,1824.000000, 0.635783,0.364217, maf-5-some-pop,maf-5-all-pops 737 chr1 20013407 20013408 rs16822721 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 737 chr1 20014738 20014739 rs7533981 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2882.000000,2126.000000, 0.575479,0.424521, maf-5-some-pop,maf-5-all-pops 737 chr1 20014752 20014753 rs7527271 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2126.000000,2882.000000, 0.424521,0.575479, maf-5-some-pop,maf-5-all-pops 737 chr1 20015299 20015300 rs16822732 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop,microattr-tpa,genotype-conflict 737 chr1 20015654 20015655 rs3813987 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP,YUSUKE, 2 A,C, 3271.000000,1737.000000, 0.653155,0.346845, maf-5-some-pop 737 chr1 20015954 20015955 rs10159394 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop 737 chr1 20016848 20016849 rs2050121 0 - G G C/T genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2818.000000,2190.000000,2190.000000,2818.000000, 0.281350,0.218650,0.218650,0.281350, maf-5-some-pop,maf-5-all-pops,genotype-conflict 737 chr1 20017720 20017721 rs4912018 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2962.000000,2046.000000, 0.591454,0.408546, maf-5-some-pop,maf-5-all-pops 737 chr1 20018076 20018077 rs11582254 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3778.000000,1230.000000, 0.754393,0.245607, maf-5-some-pop,maf-5-all-pops 737 chr1 20018194 20018195 rs3748748 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 903.000000,4105.000000, 0.180312,0.819688, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 737 chr1 20018299 20018300 rs3748749 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2877.000000,2131.000000, 0.574481,0.425519, maf-5-some-pop,maf-5-all-pops 737 chr1 20018779 20018780 rs6668463 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1222.000000,3786.000000, 0.244010,0.755990, maf-5-some-pop,maf-5-all-pops 737 chr1 20025382 20025383 rs6699160 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1806.000000,3202.000000, 0.360623,0.639377, maf-5-some-pop,maf-5-all-pops 737 chr1 20026900 20026901 rs4912146 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop 737 chr1 20035183 20035184 rs4457604 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 773.000000,4235.000000, 0.154353,0.845647, maf-5-some-pop 737 chr1 20035648 20035649 rs12759415 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3545.000000,1463.000000, 0.707867,0.292133, maf-5-some-pop,maf-5-all-pops 737 chr1 20039819 20039820 rs6704156 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop,maf-5-all-pops,genotype-conflict 737 chr1 20047185 20047186 rs3934190 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2361.000000,2647.000000,2647.000000,2361.000000, 0.235723,0.264277,0.264277,0.235723, maf-5-some-pop,maf-5-all-pops 737 chr1 20049350 20049351 rs7539841 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4190.000000,818.000000, 0.836661,0.163339, maf-5-some-pop 737 chr1 20052347 20052348 rs3929669 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 627.000000,4381.000000,4381.000000,627.000000, 0.062600,0.437400,0.437400,0.062600, maf-5-some-pop,maf-5-all-pops 737 chr1 20052372 20052373 rs3929668 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1604.000000,3404.000000,3404.000000,1604.000000, 0.160144,0.339856,0.339856,0.160144, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20056630 20056631 rs4486471 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2502.000000,2506.000000, 0.499601,0.500399, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20056758 20056759 rs4326647 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,genotype-conflict 738 chr1 20056932 20056933 rs10917526 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop 738 chr1 20057204 20057205 rs10917527 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop 738 chr1 20058236 20058237 rs960243 0 - A A G/T genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3658.000000,1350.000000,1350.000000,3658.000000, 0.365216,0.134784,0.134784,0.365216, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20060964 20060965 rs11801111 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 738 chr1 20061455 20061456 rs3850533 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop 738 chr1 20061861 20061862 rs1002103 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4267.000000,741.000000, 0.852037,0.147963, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20064574 20064575 rs1782469 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3793.000000,1215.000000,1215.000000,3793.000000, 0.378694,0.121306,0.121306,0.378694, maf-5-some-pop,maf-5-all-pops 738 chr1 20065269 20065270 rs1269029 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 140.000000,4868.000000,4868.000000,140.000000, 0.013978,0.486022,0.486022,0.013978, maf-5-some-pop 738 chr1 20066132 20066133 rs1266444 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 31 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2550.000000,2458.000000,2458.000000,2550.000000, 0.254593,0.245407,0.245407,0.254593, maf-5-some-pop,maf-5-all-pops 738 chr1 20067042 20067043 rs12064049 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 738 chr1 20077776 20077777 rs1009631 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 156.000000,4852.000000,4852.000000,156.000000, 0.015575,0.484425,0.484425,0.015575, maf-5-some-pop 738 chr1 20078133 20078134 rs17378010 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 738 chr1 20080309 20080310 rs1473689 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1352.000000,3656.000000,3656.000000,1352.000000, 0.134984,0.365016,0.365016,0.134984, maf-5-some-pop,maf-5-all-pops 738 chr1 20081063 20081064 rs1983602 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 745.000000,4263.000000,4263.000000,745.000000, 0.074381,0.425619,0.425619,0.074381, maf-5-some-pop,maf-5-all-pops 738 chr1 20082848 20082849 rs10917532 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3946.000000,1062.000000, 0.787939,0.212061, maf-5-some-pop,maf-5-all-pops 738 chr1 20083196 20083197 rs12133589 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1380.000000,3628.000000, 0.275559,0.724441, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20091055 20091056 rs12035374 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop,maf-5-all-pops 738 chr1 20091858 20091859 rs16822850 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 738 chr1 20091961 20091962 rs1266448 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3261.000000,1747.000000,1747.000000,3261.000000, 0.325579,0.174421,0.174421,0.325579, maf-5-some-pop,maf-5-all-pops 738 chr1 20092175 20092176 rs2281245 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 986.000000,4022.000000,4022.000000,986.000000, 0.098442,0.401558,0.401558,0.098442, maf-5-some-pop,maf-5-all-pops 738 chr1 20092624 20092625 rs1883570 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3008.000000,2000.000000,2000.000000,3008.000000, 0.300319,0.199681,0.199681,0.300319, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20092943 20092944 rs2235655 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 738 chr1 20096287 20096288 rs2235651 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2662.000000,2346.000000,2346.000000,2662.000000, 0.265775,0.234225,0.234225,0.265775, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20099108 20099109 rs1266434 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1872.000000,3136.000000,3136.000000,1872.000000, 0.186901,0.313099,0.313099,0.186901, maf-5-some-pop,maf-5-all-pops 738 chr1 20109838 20109839 rs6669059 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 738 chr1 20128944 20128945 rs7546098 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop,genotype-conflict 738 chr1 20135821 20135822 rs10799838 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3424.000000,1584.000000, 0.683706,0.316294, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20137713 20137714 rs4655215 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20137972 20137973 rs7517297 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop 738 chr1 20138120 20138121 rs7513083 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4647.000000,361.000000, 0.927915,0.072085, maf-5-some-pop,genotype-conflict 738 chr1 20138435 20138436 rs7513369 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3920.000000,1088.000000, 0.782748,0.217252, maf-5-some-pop,genotype-conflict 738 chr1 20139889 20139890 rs6426827 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop 738 chr1 20140035 20140036 rs1317209 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1398.000000,3610.000000,3610.000000,1398.000000, 0.139577,0.360423,0.360423,0.139577, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa 738 chr1 20140339 20140340 rs3767216 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2690.000000,2318.000000, 0.537141,0.462859, maf-5-some-pop,genotype-conflict 738 chr1 20140388 20140389 rs3767217 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 4586.000000,422.000000, 0.915735,0.084265, maf-5-some-pop 738 chr1 20140580 20140581 rs3820317 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop,genotype-conflict 738 chr1 20142412 20142413 rs3820330 0 - C C G/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1103.000000,3905.000000,3905.000000,1103.000000, 0.110124,0.389876,0.389876,0.110124, maf-5-some-pop,maf-5-all-pops 738 chr1 20142433 20142434 rs3820329 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1138.000000,3870.000000,3870.000000,1138.000000, 0.113618,0.386382,0.386382,0.113618, maf-5-some-pop,maf-5-all-pops 738 chr1 20143141 20143142 rs10917547 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3081.000000,1927.000000, 0.615216,0.384784, maf-5-some-pop,maf-5-all-pops 738 chr1 20144142 20144143 rs12405608 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 588.000000,4420.000000, 0.117412,0.882588, maf-5-some-pop 738 chr1 20144331 20144332 rs17396847 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop,genotype-conflict 738 chr1 20144979 20144980 rs16822923 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20146416 20146417 rs9651026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1021.000000,3987.000000, 0.203874,0.796126, maf-5-some-pop,maf-5-all-pops 738 chr1 20150838 20150839 rs4655231 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3249.000000,1759.000000, 0.648762,0.351238, maf-5-some-pop,maf-5-all-pops 738 chr1 20150983 20150984 rs4654865 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3249.000000,1759.000000, 0.648762,0.351238, maf-5-some-pop,maf-5-all-pops 738 chr1 20150997 20150998 rs4655232 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3248.000000,1760.000000, 0.648562,0.351438, maf-5-some-pop,maf-5-all-pops 738 chr1 20151081 20151082 rs12076332 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop 738 chr1 20151289 20151290 rs12405439 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 1399.000000,3609.000000, 0.279353,0.720647, maf-5-some-pop,maf-5-all-pops 738 chr1 20151430 20151431 rs12405947 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 3545.000000,1463.000000, 0.707867,0.292133, maf-5-some-pop,maf-5-all-pops 738 chr1 20158240 20158241 rs4509550 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 738 chr1 20158333 20158334 rs10917552 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop,genotype-conflict 738 chr1 20158603 20158604 rs2314762 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20159376 20159377 rs2314763 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop 738 chr1 20167340 20167341 rs4272591 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 535.000000,4473.000000, 0.106829,0.893171, maf-5-some-pop,genotype-conflict 738 chr1 20171859 20171860 rs6426833 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2934.000000,2074.000000, 0.585863,0.414137, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa 738 chr1 20173035 20173036 rs10799845 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2118.000000,2890.000000, 0.422923,0.577077, maf-5-some-pop,genotype-conflict 738 chr1 20173262 20173263 rs10917557 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2998.000000,2010.000000, 0.598642,0.401358, maf-5-some-pop,maf-5-all-pops 738 chr1 20173857 20173858 rs10737482 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3675.000000,1333.000000, 0.733826,0.266174, maf-5-some-pop,maf-5-all-pops 738 chr1 20175111 20175112 rs12145220 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20177667 20177668 rs12136562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 738 chr1 20183341 20183342 rs6690967 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2498.000000,2510.000000, 0.498802,0.501198, maf-5-some-pop,maf-5-all-pops 738 chr1 20183412 20183413 rs12097713 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 738 chr1 20183444 20183445 rs12117495 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 738 chr1 20184081 20184082 rs10917559 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,T, 784.000000,4224.000000, 0.156550,0.843450, maf-5-some-pop 738 chr1 20184187 20184188 rs17397143 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 718.000000,4290.000000, 0.143371,0.856629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 738 chr1 20184559 20184560 rs16823039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop,maf-5-all-pops 738 chr1 20184602 20184603 rs16823043 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop 738 chr1 20184628 20184629 rs6694721 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop,genotype-conflict 738 chr1 20184934 20184935 rs10917560 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1073.000000,3935.000000, 0.214257,0.785743, maf-5-some-pop,genotype-conflict 739 chr1 20187320 20187321 rs7531128 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 739 chr1 20187510 20187511 rs6686814 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop 739 chr1 20188400 20188401 rs17397248 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop,maf-5-all-pops,genotype-conflict 739 chr1 20188457 20188458 rs16823060 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 739 chr1 20190671 20190672 rs16823061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop,maf-5-all-pops 739 chr1 20193850 20193851 rs17401427 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,G, 20.000000,4988.000000, 0.003994,0.996006, 739 chr1 20194314 20194315 rs16823076 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 739 chr1 20194701 20194702 rs6670226 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2276.000000,2732.000000, 0.454473,0.545527, maf-5-some-pop,maf-5-all-pops 739 chr1 20197977 20197978 rs12064952 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 943.000000,4065.000000, 0.188299,0.811701, maf-5-some-pop 739 chr1 20198936 20198937 rs7553638 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2733.000000,2275.000000, 0.545727,0.454273, maf-5-some-pop,maf-5-all-pops 739 chr1 20203633 20203634 rs10916662 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1291.000000,3717.000000, 0.257788,0.742212, maf-5-some-pop,maf-5-all-pops 739 chr1 20211791 20211792 rs2315059 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop 739 chr1 20216859 20216860 rs10799593 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2274.000000,2734.000000, 0.454073,0.545927, maf-5-some-pop,maf-5-all-pops 739 chr1 20234257 20234258 rs10916669 0 + G G G/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,TISHKOFF, 2 G,T, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop 739 chr1 20235029 20235030 rs16823095 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop 739 chr1 20240589 20240590 rs1111872 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop,genotype-conflict 739 chr1 20243146 20243147 rs1572783 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 4240.000000,768.000000,768.000000,4240.000000, 0.423323,0.076677,0.076677,0.423323, maf-5-some-pop 739 chr1 20243832 20243833 rs10916670 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3294.000000,1714.000000, 0.657748,0.342252, maf-5-some-pop,maf-5-all-pops 739 chr1 20244738 20244739 rs16823116 0 + C C A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 5.000000,4492.000000,511.000000, 0.000998,0.896965,0.102037, maf-5-some-pop 739 chr1 20247878 20247879 rs12410291 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop,maf-5-all-pops 739 chr1 20249509 20249510 rs877064 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1269.000000,3739.000000,3739.000000,1269.000000, 0.126697,0.373303,0.373303,0.126697, maf-5-some-pop,genotype-conflict 739 chr1 20250729 20250730 rs2233688 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GENAISSANCE,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 4118.000000,890.000000,890.000000,4118.000000, 0.411142,0.088858,0.088858,0.411142, maf-5-some-pop,maf-5-all-pops 739 chr1 20255598 20255599 rs1093731 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 739 chr1 20255698 20255699 rs6668942 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop 739 chr1 20255991 20255992 rs6660540 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop 739 chr1 20257350 20257351 rs12059920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 739 chr1 20257826 20257827 rs11578854 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 739 chr1 20257845 20257846 rs1093732 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4234.000000,774.000000, 0.845447,0.154553, maf-5-some-pop,maf-5-all-pops 739 chr1 20258472 20258473 rs1093733 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4509.000000,499.000000, 0.900359,0.099641, maf-5-some-pop 739 chr1 20266734 20266735 rs16823170 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop 739 chr1 20267630 20267631 rs16823174 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,genotype-conflict 739 chr1 20269023 20269024 rs41416448 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 507.000000,4501.000000,4501.000000,507.000000, 0.050619,0.449381,0.449381,0.050619, maf-5-some-pop 739 chr1 20269168 20269169 rs1774128 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop,maf-5-all-pops 739 chr1 20272917 20272918 rs6685105 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop,genotype-conflict 739 chr1 20275867 20275868 rs12083280 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop 739 chr1 20278923 20278924 rs12132830 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop,genotype-conflict 739 chr1 20281544 20281545 rs12083138 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop 739 chr1 20283942 20283943 rs818963 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1579.000000,3429.000000,3429.000000,1579.000000, 0.157648,0.342352,0.342352,0.157648, maf-5-some-pop,genotype-conflict 739 chr1 20286562 20286563 rs10916679 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop,genotype-conflict 739 chr1 20291949 20291950 rs12044628 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1720.000000,3288.000000, 0.343450,0.656550, maf-5-some-pop,maf-5-all-pops 739 chr1 20292005 20292006 rs12023742 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1720.000000,3288.000000, 0.343450,0.656550, maf-5-some-pop,maf-5-all-pops 739 chr1 20292377 20292378 rs13375942 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1111.000000,3897.000000, 0.221845,0.778155, maf-5-some-pop,maf-5-all-pops 739 chr1 20293535 20293536 rs17411146 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,genotype-conflict 739 chr1 20293790 20293791 rs6672057 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 739 chr1 20295021 20295022 rs4655020 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1944.000000,3064.000000, 0.388179,0.611821, maf-5-some-pop,maf-5-all-pops 739 chr1 20295991 20295992 rs10916681 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 739 chr1 20296318 20296319 rs17402685 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops 739 chr1 20301926 20301927 rs876018 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,RIVM-TOX,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,UWGC, 2 A,T, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop,maf-5-all-pops,genotype-conflict 739 chr1 20303150 20303151 rs955587 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 602.000000,4406.000000,4406.000000,602.000000, 0.060104,0.439896,0.439896,0.060104, maf-5-some-pop,genotype-conflict 739 chr1 20303606 20303607 rs818958 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4640.000000,368.000000,368.000000,4640.000000, 0.463259,0.036741,0.036741,0.463259, maf-5-some-pop 739 chr1 20305886 20305887 rs3753827 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 2078.000000,2930.000000, 0.414936,0.585064, maf-5-some-pop,maf-5-all-pops 739 chr1 20306570 20306571 rs11573152 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,BUSHMAN,EGP_SNPS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 58.000000,4950.000000,4950.000000,58.000000, 0.005791,0.494209,0.494209,0.005791, maf-5-some-pop 739 chr1 20309564 20309565 rs10916685 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3421.000000,1587.000000, 0.683107,0.316893, maf-5-some-pop,maf-5-all-pops,genotype-conflict 739 chr1 20315411 20315412 rs6676409 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4285.000000,723.000000, 0.855631,0.144369, maf-5-some-pop,maf-5-all-pops 740 chr1 20329744 20329745 rs1832571 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1874.000000,3134.000000,3134.000000,1874.000000, 0.187101,0.312899,0.312899,0.187101, maf-5-some-pop,maf-5-all-pops 740 chr1 20334628 20334629 rs1395470 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1030.000000,3978.000000,3978.000000,1030.000000, 0.102835,0.397165,0.397165,0.102835, maf-5-some-pop,maf-5-all-pops 740 chr1 20338100 20338101 rs818670 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2205.000000,2803.000000,2803.000000,2205.000000, 0.220148,0.279852,0.279852,0.220148, maf-5-some-pop,maf-5-all-pops 740 chr1 20350373 20350374 rs4655079 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 463.000000,4545.000000, 0.092452,0.907548, maf-5-some-pop,genotype-conflict 740 chr1 20367677 20367678 rs1578642 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2156.000000,2852.000000,2852.000000,2156.000000, 0.215256,0.284744,0.284744,0.215256, maf-5-some-pop,maf-5-all-pops 740 chr1 20369477 20369478 rs1774143 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2249.000000,2759.000000,2759.000000,2249.000000, 0.224541,0.275459,0.275459,0.224541, maf-5-some-pop,maf-5-all-pops 740 chr1 20369786 20369787 rs11589805 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 930.000000,4078.000000, 0.185703,0.814297, maf-5-some-pop 740 chr1 20373106 20373107 rs1848112 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 504.000000,4504.000000,4504.000000,504.000000, 0.050319,0.449681,0.449681,0.050319, maf-5-some-pop,genotype-conflict 740 chr1 20373968 20373969 rs527089 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 645.000000,4363.000000,4363.000000,645.000000, 0.064397,0.435603,0.435603,0.064397, maf-5-some-pop 740 chr1 20376754 20376755 rs483625 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,C, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop,genotype-conflict 740 chr1 20384783 20384784 rs12403822 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop,maf-5-all-pops 740 chr1 20386065 20386066 rs504583 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 2162.000000,2846.000000,2846.000000,2162.000000, 0.215855,0.284145,0.284145,0.215855, maf-5-some-pop,maf-5-all-pops 740 chr1 20387574 20387575 rs16823377 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 G,T, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop,genotype-conflict 740 chr1 20387605 20387606 rs558775 0 - A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 740 chr1 20392572 20392573 rs12080954 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop 740 chr1 20395496 20395497 rs10916703 0 + G G A/G genomic single unknown 0 0 near-gene-5,missense,untranslated-5 exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EGP_SNPS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 504.000000,4504.000000, 0.100639,0.899361, maf-5-some-pop,genotype-conflict 740 chr1 20395586 20395587 rs2148911 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop,genotype-conflict 740 chr1 20397239 20397240 rs656110 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2747.000000,2261.000000,2261.000000,2747.000000, 0.274261,0.225739,0.225739,0.274261, maf-5-some-pop,genotype-conflict 740 chr1 20397976 20397977 rs11573200 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 740 chr1 20399051 20399052 rs719543 0 - C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 740 chr1 20399642 20399643 rs3767225 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1412.000000,3596.000000, 0.281949,0.718051, maf-5-some-pop,maf-5-all-pops 740 chr1 20400620 20400621 rs11573209 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 G,T, 4966.000000,42.000000, 0.991613,0.008387, 740 chr1 20403097 20403098 rs11573222 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 1412.000000,3596.000000, 0.281949,0.718051, maf-5-some-pop,maf-5-all-pops 740 chr1 20404143 20404144 rs3767229 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,YUSUKE, 2 C,T, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 740 chr1 20405164 20405165 rs521179 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 774.000000,4234.000000,4234.000000,774.000000, 0.077276,0.422724,0.422724,0.077276, maf-5-some-pop,genotype-conflict 740 chr1 20409373 20409374 rs525380 0 + A A A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2273.000000,2735.000000, 0.453874,0.546126, maf-5-some-pop,maf-5-all-pops,genotype-conflict 740 chr1 20410794 20410795 rs660414 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3689.000000,1319.000000,1319.000000,3689.000000, 0.368311,0.131689,0.131689,0.368311, maf-5-some-pop,genotype-conflict 740 chr1 20411331 20411332 rs2020887 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF,UWGC, 2 C,T, 3749.000000,1259.000000, 0.748602,0.251398, maf-5-some-pop,maf-5-all-pops,genotype-conflict 740 chr1 20411644 20411645 rs7538957 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 740 chr1 20414025 20414026 rs11573269 0 + T T G/T genomic single unknown 0 0 intron exact 1 MixedObserved 7 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 G,T, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop 740 chr1 20414238 20414239 rs11573272 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3636.000000,1372.000000, 0.726038,0.273962, maf-5-some-pop,maf-5-all-pops 740 chr1 20416793 20416794 rs11573288 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4598.000000,410.000000, 0.918131,0.081869, maf-5-some-pop,genotype-conflict 740 chr1 20416877 20416878 rs565503 0 - C C C/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 740 chr1 20417764 20417765 rs11573291 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,genotype-conflict 740 chr1 20417980 20417981 rs534397 0 - C C C/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,ABI,AFFY,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 740 chr1 20423098 20423099 rs6699362 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop,maf-5-all-pops 740 chr1 20423209 20423210 rs765838 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 4949.000000,59.000000,59.000000,4949.000000, 0.494109,0.005891,0.005891,0.494109, maf-5-some-pop,genotype-conflict 740 chr1 20426905 20426906 rs607584 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 740 chr1 20428552 20428553 rs10916707 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,G, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,genotype-conflict 740 chr1 20435465 20435466 rs1395468 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3525.000000,1483.000000, 0.703874,0.296126, maf-5-some-pop,maf-5-all-pops 740 chr1 20441632 20441633 rs10916711 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop 740 chr1 20442053 20442054 rs584367 0 + T T C/T genomic single unknown 0 0 intron,missense exact 1 34 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3853.000000,1155.000000, 0.769369,0.230631, maf-5-some-pop 740 chr1 20442272 20442273 rs569039 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,EGP_SNPS,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 740 chr1 20442690 20442691 rs3736979 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2749.000000,2259.000000, 0.548922,0.451078, maf-5-some-pop,maf-5-all-pops,genotype-conflict 740 chr1 20444472 20444473 rs1567102 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 4237.000000,771.000000, 0.846046,0.153954, maf-5-some-pop,genotype-conflict 740 chr1 20444795 20444796 rs16823482 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop,genotype-conflict 741 chr1 20451811 20451812 rs636584 0 - C C C/G genomic single unknown 0 0 unknown exact 1 DuplicateObserved 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 741 chr1 20452433 20452434 rs623784 0 - A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3383.000000,1625.000000,1625.000000,3383.000000, 0.337760,0.162240,0.162240,0.337760, maf-5-some-pop 741 chr1 20452613 20452614 rs11582251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop 741 chr1 20467576 20467577 rs4654839 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4371.000000,637.000000, 0.872804,0.127196, maf-5-some-pop,genotype-conflict 741 chr1 20473178 20473179 rs11582551 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1319.000000,3689.000000, 0.263379,0.736621, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20480839 20480840 rs6426614 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1715.000000,3293.000000, 0.342452,0.657548, maf-5-some-pop,maf-5-all-pops 741 chr1 20491299 20491300 rs10753482 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop 741 chr1 20491841 20491842 rs7515752 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4275.000000,733.000000, 0.853634,0.146366, maf-5-some-pop,genotype-conflict 741 chr1 20493869 20493870 rs6667486 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1738.000000,3270.000000, 0.347045,0.652955, maf-5-some-pop,maf-5-all-pops 741 chr1 20494740 20494741 rs12025316 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4089.000000,919.000000, 0.816494,0.183506, maf-5-some-pop 741 chr1 20500590 20500591 rs7542968 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop,maf-5-all-pops 741 chr1 20502360 20502361 rs2301479 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,T, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop,genotype-conflict 741 chr1 20502760 20502761 rs10799612 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3853.000000,1155.000000, 0.769369,0.230631, maf-5-some-pop,maf-5-all-pops 741 chr1 20503182 20503183 rs11588698 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 741 chr1 20503709 20503710 rs10753483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2978.000000,2030.000000, 0.594649,0.405351, maf-5-some-pop,genotype-conflict 741 chr1 20511807 20511808 rs6426617 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2921.000000,2087.000000, 0.583267,0.416733, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20518225 20518226 rs3179690 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop,genotype-conflict 741 chr1 20519461 20519462 rs6685058 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 741 chr1 20519807 20519808 rs1061588 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SSMP,TISHKOFF, 2 A,G, 1756.000000,3252.000000, 0.350639,0.649361, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20525159 20525160 rs6426618 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 741 chr1 20526046 20526047 rs6668468 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1846.000000,3162.000000, 0.368610,0.631390, maf-5-some-pop,maf-5-all-pops 741 chr1 20526069 20526070 rs7523307 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,genotype-conflict 741 chr1 20532400 20532401 rs7517797 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,genotype-conflict 741 chr1 20536584 20536585 rs737647 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3816.000000,1192.000000, 0.761981,0.238019, maf-5-some-pop,genotype-conflict 741 chr1 20537225 20537226 rs10916721 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2098.000000,2910.000000, 0.418930,0.581070, maf-5-some-pop,maf-5-all-pops 741 chr1 20542979 20542980 rs7533370 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop 741 chr1 20544763 20544764 rs16823611 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 43.000000,4965.000000, 0.008586,0.991414, maf-5-some-pop 741 chr1 20544834 20544835 rs2213801 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1636.000000,3372.000000, 0.326677,0.673323, maf-5-some-pop,maf-5-all-pops 741 chr1 20550122 20550123 rs6685397 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1461.000000,3547.000000, 0.291733,0.708267, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20556028 20556029 rs12135822 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 741 chr1 20557581 20557582 rs10916727 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3851.000000,1157.000000, 0.768970,0.231030, maf-5-some-pop,genotype-conflict 741 chr1 20559926 20559927 rs17352664 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 408.000000,4600.000000, 0.081470,0.918530, maf-5-some-pop,genotype-conflict 741 chr1 20560334 20560335 rs10916730 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop 741 chr1 20560700 20560701 rs16823636 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,maf-5-all-pops 741 chr1 20560751 20560752 rs6667129 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 741 chr1 20561068 20561069 rs6656257 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 741 chr1 20561094 20561095 rs6692412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop,maf-5-all-pops 741 chr1 20561433 20561434 rs7514659 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 452.000000,4556.000000, 0.090256,0.909744, maf-5-some-pop 741 chr1 20564148 20564149 rs10916731 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop 741 chr1 20567938 20567939 rs16823647 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop,genotype-conflict 741 chr1 20572453 20572454 rs6426623 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1350.000000,3658.000000, 0.269569,0.730431, maf-5-some-pop,maf-5-all-pops 741 chr1 20572528 20572529 rs1010573 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3022.000000,1986.000000, 0.603435,0.396565, maf-5-some-pop,maf-5-all-pops 741 chr1 20572620 20572621 rs2157508 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1474.000000,3534.000000, 0.294329,0.705671, maf-5-some-pop,maf-5-all-pops 741 chr1 20572637 20572638 rs6426624 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20572686 20572687 rs17354951 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop,genotype-conflict 741 chr1 20572893 20572894 rs2157510 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,maf-5-all-pops 741 chr1 20575901 20575902 rs10489156 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3075.000000,1933.000000, 0.614018,0.385982, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20576255 20576256 rs10489157 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3448.000000,1560.000000, 0.688498,0.311502, maf-5-some-pop,maf-5-all-pops,genotype-conflict 741 chr1 20577029 20577030 rs4655167 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 891.000000,4117.000000, 0.177915,0.822085, maf-5-some-pop 742 chr1 20582417 20582418 rs11578017 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1147.000000,3861.000000, 0.229034,0.770966, maf-5-some-pop,maf-5-all-pops 742 chr1 20582684 20582685 rs736665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1299.000000,3709.000000, 0.259385,0.740615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20583059 20583060 rs11804672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4449.000000,559.000000, 0.888379,0.111621, maf-5-some-pop 742 chr1 20583237 20583238 rs743982 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 911.000000,4097.000000,4097.000000,911.000000, 0.090954,0.409046,0.409046,0.090954, maf-5-some-pop 742 chr1 20583321 20583322 rs743983 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3688.000000,1320.000000,1320.000000,3688.000000, 0.368211,0.131789,0.131789,0.368211, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20583733 20583734 rs17352761 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 742 chr1 20587359 20587360 rs11576548 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,SSAHASNP,SSMP, 2 G,T, 3623.000000,1385.000000, 0.723442,0.276558, 742 chr1 20592339 20592340 rs966366 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2815.000000,2193.000000, 0.562101,0.437899, maf-5-some-pop,maf-5-all-pops 742 chr1 20592874 20592875 rs3888820 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1008.000000,4000.000000,4000.000000,1008.000000, 0.100639,0.399361,0.399361,0.100639, maf-5-some-pop 742 chr1 20592954 20592955 rs743986 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 944.000000,4064.000000,4064.000000,944.000000, 0.094249,0.405751,0.405751,0.094249, maf-5-some-pop 742 chr1 20593850 20593851 rs10753491 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4064.000000,944.000000, 0.811502,0.188498, maf-5-some-pop 742 chr1 20593924 20593925 rs11581645 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 940.000000,4068.000000, 0.187700,0.812300, maf-5-some-pop,maf-5-all-pops 742 chr1 20598350 20598351 rs2017456 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4044.000000,964.000000,964.000000,4044.000000, 0.403754,0.096246,0.096246,0.403754, maf-5-some-pop,genotype-conflict 742 chr1 20604013 20604014 rs4655183 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 921.000000,4087.000000, 0.183906,0.816094, maf-5-some-pop 742 chr1 20607375 20607376 rs6426628 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 970.000000,4038.000000, 0.193690,0.806310, maf-5-some-pop 742 chr1 20608199 20608200 rs2142629 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1972.000000,3036.000000, 0.393770,0.606230, maf-5-some-pop,maf-5-all-pops 742 chr1 20611319 20611320 rs11803209 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,KRIBB_YJKIM,SSMP, 2 A,G, 4576.000000,432.000000, 0.913738,0.086262, maf-5-some-pop 742 chr1 20613062 20613063 rs4422977 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop,genotype-conflict 742 chr1 20613457 20613458 rs1076624 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1030.000000,3978.000000,3978.000000,1030.000000, 0.102835,0.397165,0.397165,0.102835, maf-5-some-pop 742 chr1 20614451 20614452 rs12139607 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3672.000000,1336.000000, 0.733227,0.266773, maf-5-some-pop,maf-5-all-pops 742 chr1 20615500 20615501 rs16823805 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop,genotype-conflict 742 chr1 20615720 20615721 rs12044483 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop 742 chr1 20621763 20621764 rs7532445 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3810.000000,1198.000000, 0.760783,0.239217, maf-5-some-pop,maf-5-all-pops 742 chr1 20622271 20622272 rs12093201 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop 742 chr1 20623630 20623631 rs12080654 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 695.000000,4313.000000, 0.138778,0.861222, maf-5-some-pop,genotype-conflict 742 chr1 20628115 20628116 rs10799626 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 616.000000,4392.000000, 0.123003,0.876997, maf-5-some-pop,genotype-conflict 742 chr1 20630833 20630834 rs10916755 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2527.000000,2481.000000, 0.504593,0.495407, maf-5-some-pop,maf-5-all-pops 742 chr1 20631011 20631012 rs16823838 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 742 chr1 20631245 20631246 rs10753495 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3913.000000,1095.000000, 0.781350,0.218650, maf-5-some-pop 742 chr1 20632907 20632908 rs10916756 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop 742 chr1 20633279 20633280 rs4655191 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3693.000000,1315.000000, 0.737420,0.262580, maf-5-some-pop 742 chr1 20633828 20633829 rs6676380 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2069.000000,2939.000000, 0.413139,0.586861, maf-5-some-pop 742 chr1 20634397 20634398 rs10916758 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 1320.000000,3688.000000, 0.263578,0.736422, maf-5-some-pop,maf-5-all-pops 742 chr1 20637373 20637374 rs10916761 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop,genotype-conflict 742 chr1 20638036 20638037 rs6661104 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM, 2 A,C, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop 742 chr1 20639362 20639363 rs16823861 0 + G G A/G genomic single unknown 0 0 coding-synon,untranslated-5 exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,CORNELL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,genotype-conflict 742 chr1 20644751 20644752 rs10916762 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1359.000000,3649.000000, 0.271366,0.728634, maf-5-some-pop 742 chr1 20647163 20647164 rs10916764 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1051.000000,3957.000000, 0.209864,0.790136, maf-5-some-pop,maf-5-all-pops 742 chr1 20649067 20649068 rs7523120 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1973.000000,3035.000000, 0.393970,0.606030, maf-5-some-pop 742 chr1 20651883 20651884 rs4655195 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3574.000000,1434.000000, 0.713658,0.286342, maf-5-some-pop,maf-5-all-pops 742 chr1 20651900 20651901 rs4655196 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3574.000000,1434.000000, 0.713658,0.286342, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20657886 20657887 rs1883165 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop,maf-5-all-pops 742 chr1 20658088 20658089 rs4329481 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3410.000000,1598.000000, 0.680911,0.319089, maf-5-some-pop,maf-5-all-pops 742 chr1 20662937 20662938 rs10916769 0 + A A A/G genomic single unknown 0 0 missense exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3886.000000,1122.000000, 0.775958,0.224042, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20664060 20664061 rs742056 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4705.000000,303.000000,303.000000,4705.000000, 0.469748,0.030252,0.030252,0.469748, maf-5-some-pop,genotype-conflict 742 chr1 20664412 20664413 rs16823895 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 742 chr1 20667004 20667005 rs11580208 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3037.000000,1971.000000, 0.606430,0.393570, maf-5-some-pop,genotype-conflict 742 chr1 20678550 20678551 rs230182 0 - A A C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,CLINSEQ_SNP,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,SC_SNP,SI_EXO,SSMP,TSC-CSHL, 4 A,C,G,T, 4830.000000,178.000000,178.000000,4830.000000, 0.482228,0.017772,0.017772,0.482228, maf-5-some-pop 742 chr1 20680717 20680718 rs2072751 0 + G G A/G genomic single unknown 0 0 missense exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1149.000000,3859.000000, 0.229433,0.770567, maf-5-some-pop,genotype-conflict 742 chr1 20683433 20683434 rs10916774 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1176.000000,3832.000000, 0.234824,0.765176, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20683864 20683865 rs12081729 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 742 chr1 20684704 20684705 rs230175 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2537.000000,2471.000000, 0.506589,0.493411, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20685996 20685997 rs2296451 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,YUSUKE, 4 A,C,G,T, 4153.000000,855.000000,855.000000,4153.000000, 0.414637,0.085363,0.085363,0.414637, maf-5-some-pop 742 chr1 20686161 20686162 rs230174 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop,maf-5-all-pops 742 chr1 20687284 20687285 rs12045792 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, maf-5-some-pop,genotype-conflict 742 chr1 20688235 20688236 rs6696105 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3606.000000,1402.000000, 0.720048,0.279952, maf-5-some-pop 742 chr1 20691862 20691863 rs11809282 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 742 chr1 20697722 20697723 rs12141992 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 742 chr1 20702230 20702231 rs6426634 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 743 chr1 20709518 20709519 rs12024068 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 773.000000,4235.000000, 0.154353,0.845647, maf-5-some-pop 743 chr1 20715708 20715709 rs41403446 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,AFFY_GWHS,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4900.000000,108.000000,108.000000,4900.000000, 0.489217,0.010783,0.010783,0.489217, maf-5-some-pop 743 chr1 20715868 20715869 rs12049377 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 855.000000,4153.000000, 0.170727,0.829273, maf-5-some-pop 743 chr1 20725731 20725732 rs12027661 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1254.000000,3754.000000, 0.250399,0.749601, maf-5-some-pop 743 chr1 20726738 20726739 rs4655207 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop 743 chr1 20728888 20728889 rs912813 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 743 chr1 20733375 20733376 rs10753498 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3098.000000,1910.000000, 0.618610,0.381390, maf-5-some-pop,maf-5-all-pops 743 chr1 20745073 20745074 rs1886737 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop,maf-5-all-pops 743 chr1 20745484 20745485 rs974332 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3564.000000,1444.000000, 0.711661,0.288339, maf-5-some-pop,genotype-conflict 743 chr1 20746567 20746568 rs764151 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 650.000000,4358.000000,4358.000000,650.000000, 0.064896,0.435104,0.435104,0.064896, maf-5-some-pop,genotype-conflict 743 chr1 20750560 20750561 rs7537381 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3072.000000,1936.000000, 0.613419,0.386581, maf-5-some-pop,maf-5-all-pops 743 chr1 20756893 20756894 rs912811 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3379.000000,1629.000000, 0.674720,0.325280, maf-5-some-pop,maf-5-all-pops 743 chr1 20758191 20758192 rs10753501 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1658.000000,3350.000000, 0.331070,0.668930, maf-5-some-pop,maf-5-all-pops 743 chr1 20758226 20758227 rs7547942 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop,maf-5-all-pops 743 chr1 20762132 20762133 rs7513147 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops 743 chr1 20762281 20762282 rs6668912 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1672.000000,3336.000000, 0.333866,0.666134, maf-5-some-pop,maf-5-all-pops 743 chr1 20762895 20762896 rs1555797 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop,genotype-conflict 743 chr1 20766156 20766157 rs4655210 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop 743 chr1 20766278 20766279 rs12044712 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop 743 chr1 20767523 20767524 rs10916799 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2588.000000,2420.000000, 0.516773,0.483227, maf-5-some-pop,maf-5-all-pops,microattr-tpa 743 chr1 20769183 20769184 rs750070 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2624.000000,2384.000000, 0.523962,0.476038, maf-5-some-pop,maf-5-all-pops,microattr-tpa 743 chr1 20769397 20769398 rs10799635 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1638.000000,3370.000000, 0.327077,0.672923, maf-5-some-pop,maf-5-all-pops 743 chr1 20770886 20770887 rs10799636 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 743 chr1 20772486 20772487 rs721360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop,maf-5-all-pops,genotype-conflict 743 chr1 20772816 20772817 rs7414922 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2866.000000,2142.000000, 0.572284,0.427716, maf-5-some-pop,maf-5-all-pops,genotype-conflict 743 chr1 20778267 20778268 rs10916802 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop 743 chr1 20782749 20782750 rs12729829 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 G,T, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 743 chr1 20782982 20782983 rs12743605 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop,maf-5-all-pops 743 chr1 20784415 20784416 rs419064 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4727.000000,281.000000,281.000000,4727.000000, 0.471945,0.028055,0.028055,0.471945, maf-5-some-pop 743 chr1 20785782 20785783 rs12161216 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop,maf-5-all-pops 743 chr1 20789632 20789633 rs2453020 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 522.000000,4486.000000,4486.000000,522.000000, 0.052117,0.447883,0.447883,0.052117, maf-5-some-pop 743 chr1 20789644 20789645 rs12023000 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop,maf-5-all-pops 743 chr1 20791009 20791010 rs11805579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 743 chr1 20791049 20791050 rs390423 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2144.000000,2864.000000,2864.000000,2144.000000, 0.214058,0.285942,0.285942,0.214058, maf-5-some-pop,maf-5-all-pops,genotype-conflict 743 chr1 20793014 20793015 rs6663450 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2204.000000,2804.000000, 0.440096,0.559904, maf-5-some-pop,maf-5-all-pops 743 chr1 20798594 20798595 rs12741740 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2049.000000,2959.000000, 0.409145,0.590855, maf-5-some-pop,maf-5-all-pops 743 chr1 20814521 20814522 rs1152984 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1530.000000,3478.000000, 0.305511,0.694489, maf-5-some-pop,maf-5-all-pops 743 chr1 20815401 20815402 rs6683578 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2950.000000,2058.000000, 0.589058,0.410942, maf-5-some-pop,maf-5-all-pops 743 chr1 20821964 20821965 rs12076947 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4195.000000,813.000000, 0.837660,0.162340, maf-5-some-pop,maf-5-all-pops 743 chr1 20822746 20822747 rs11589084 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 743 chr1 20825363 20825364 rs1152987 0 + A A A/C genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,C, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 743 chr1 20826242 20826243 rs1044332 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SEQUENOM,SI_EXO,SSMP,YUSUKE, 4 A,C,G,T, 289.000000,4719.000000,4719.000000,289.000000, 0.028854,0.471146,0.471146,0.028854, maf-5-some-pop 743 chr1 20829559 20829560 rs2641114 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2307.000000,2701.000000, 0.460663,0.539337, maf-5-some-pop 743 chr1 20830074 20830075 rs640244 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 743 chr1 20830126 20830127 rs17412284 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 743 chr1 20834737 20834738 rs610763 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 405.000000,4603.000000, 0.080871,0.919129, maf-5-some-pop,genotype-conflict 743 chr1 20835993 20835994 rs11589696 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 744 chr1 20855055 20855056 rs10916806 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop,genotype-conflict 744 chr1 20855878 20855879 rs10916809 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,maf-5-all-pops 744 chr1 20855981 20855982 rs597557 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 411.000000,4597.000000,4597.000000,411.000000, 0.041034,0.458966,0.458966,0.041034, maf-5-some-pop 744 chr1 20856976 20856977 rs534963 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 556.000000,4452.000000,4452.000000,556.000000, 0.055511,0.444489,0.444489,0.055511, maf-5-some-pop 744 chr1 20857063 20857064 rs6698887 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop,maf-5-all-pops 744 chr1 20865354 20865355 rs661784 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4512.000000,496.000000,496.000000,4512.000000, 0.450479,0.049521,0.049521,0.450479, maf-5-some-pop 744 chr1 20865702 20865703 rs660423 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4529.000000,479.000000,479.000000,4529.000000, 0.452177,0.047823,0.047823,0.452177, maf-5-some-pop 744 chr1 20865878 20865879 rs10493000 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1022.000000,3986.000000, 0.204073,0.795927, maf-5-some-pop 744 chr1 20866327 20866328 rs561411 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 479.000000,4529.000000,4529.000000,479.000000, 0.047823,0.452177,0.452177,0.047823, maf-5-some-pop 744 chr1 20866698 20866699 rs645548 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4502.000000,506.000000, 0.898962,0.101038, maf-5-some-pop,genotype-conflict 744 chr1 20866734 20866735 rs645496 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 499.000000,4509.000000,4509.000000,499.000000, 0.049820,0.450180,0.450180,0.049820, maf-5-some-pop,genotype-conflict 744 chr1 20869146 20869147 rs1764577 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4512.000000,496.000000,496.000000,4512.000000, 0.450479,0.049521,0.049521,0.450479, maf-5-some-pop,maf-5-all-pops,genotype-conflict 744 chr1 20872900 20872901 rs666501 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1021.000000,3987.000000,3987.000000,1021.000000, 0.101937,0.398063,0.398063,0.101937, maf-5-some-pop,maf-5-all-pops 744 chr1 20881753 20881754 rs10799637 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1236.000000,3772.000000, 0.246805,0.753195, maf-5-some-pop,maf-5-all-pops 744 chr1 20882522 20882523 rs6689263 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop,maf-5-all-pops 744 chr1 20883202 20883203 rs12565883 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop,maf-5-all-pops 744 chr1 20883421 20883422 rs675397 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2017.000000,2991.000000, 0.402756,0.597244, maf-5-some-pop,genotype-conflict 744 chr1 20883502 20883503 rs7545658 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3172.000000,1836.000000, 0.633387,0.366613, maf-5-some-pop,maf-5-all-pops 744 chr1 20883521 20883522 rs7555911 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2172.000000,2836.000000, 0.433706,0.566294, maf-5-some-pop,maf-5-all-pops,genotype-conflict 744 chr1 20883815 20883816 rs677214 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,microattr-tpa,genotype-conflict 744 chr1 20884940 20884941 rs12134554 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop 744 chr1 20886766 20886767 rs1253885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 744 chr1 20886779 20886780 rs10799639 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1988.000000,3020.000000, 0.396965,0.603035, maf-5-some-pop,maf-5-all-pops,genotype-conflict 744 chr1 20888347 20888348 rs657624 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop,maf-5-all-pops 744 chr1 20888561 20888562 rs1253887 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop,genotype-conflict 744 chr1 20890148 20890149 rs1253890 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 355.000000,4653.000000,4653.000000,355.000000, 0.035443,0.464557,0.464557,0.035443, maf-5-some-pop 744 chr1 20891825 20891826 rs41415447 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,maf-5-all-pops 744 chr1 20892324 20892325 rs1781466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop 744 chr1 20892930 20892931 rs10916814 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3373.000000,1635.000000, 0.673522,0.326478, maf-5-some-pop,maf-5-all-pops 744 chr1 20893964 20893965 rs472055 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3146.000000,1862.000000, 0.628195,0.371805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 744 chr1 20894449 20894450 rs476582 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4076.000000,932.000000, 0.813898,0.186102, maf-5-some-pop,genotype-conflict 744 chr1 20894617 20894618 rs477679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 A,G, 931.000000,4077.000000, 0.185903,0.814097, maf-5-some-pop 744 chr1 20895720 20895721 rs530104 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4074.000000,934.000000, 0.813498,0.186502, maf-5-some-pop 744 chr1 20895873 20895874 rs10916815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop,maf-5-all-pops 744 chr1 20900122 20900123 rs639400 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop 744 chr1 20901687 20901688 rs4655223 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 744 chr1 20903161 20903162 rs12407971 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop,maf-5-all-pops 744 chr1 20903984 20903985 rs10799646 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2198.000000,2810.000000, 0.438898,0.561102, maf-5-some-pop,maf-5-all-pops 744 chr1 20911007 20911008 rs680748 0 - C C C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 744 chr1 20911403 20911404 rs678980 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 608.000000,4400.000000,4400.000000,608.000000, 0.060703,0.439297,0.439297,0.060703, maf-5-some-pop 744 chr1 20916790 20916791 rs818202 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2774.000000,2234.000000,2234.000000,2774.000000, 0.276957,0.223043,0.223043,0.276957, maf-5-some-pop,maf-5-all-pops 744 chr1 20928153 20928154 rs577042 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3744.000000,1264.000000,1264.000000,3744.000000, 0.373802,0.126198,0.126198,0.373802, maf-5-some-pop,maf-5-all-pops 744 chr1 20933340 20933341 rs10916827 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1804.000000,3204.000000, 0.360224,0.639776, maf-5-some-pop,maf-5-all-pops 744 chr1 20934282 20934283 rs527912 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1608.000000,3400.000000, 0.321086,0.678914, maf-5-some-pop,maf-5-all-pops 744 chr1 20934439 20934440 rs41467355 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 1773.000000,3235.000000,3235.000000,1773.000000, 0.177017,0.322983,0.322983,0.177017, maf-5-some-pop,maf-5-all-pops 744 chr1 20934795 20934796 rs1689924 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2687.000000,2321.000000, 0.536542,0.463458, maf-5-some-pop,maf-5-all-pops 744 chr1 20936175 20936176 rs572529 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 744 chr1 20936232 20936233 rs573337 0 + C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop 744 chr1 20940257 20940258 rs488991 0 - T T A/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PHARMGKB_PPII,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 744 chr1 20943138 20943139 rs12072318 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop 744 chr1 20943194 20943195 rs12404655 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4277.000000,731.000000, 0.854034,0.145966, maf-5-some-pop 744 chr1 20943280 20943281 rs12072405 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop 744 chr1 20945685 20945686 rs10916833 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1107.000000,3901.000000, 0.221046,0.778954, maf-5-some-pop 744 chr1 20952125 20952126 rs10799651 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 836.000000,4172.000000, 0.166933,0.833067, maf-5-some-pop 744 chr1 20952270 20952271 rs10799652 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4173.000000,835.000000, 0.833267,0.166733, maf-5-some-pop 744 chr1 20955182 20955183 rs10916837 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 744 chr1 20961550 20961551 rs35731336 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 760.000000,4248.000000, 0.151757,0.848243, maf-5-some-pop,maf-5-all-pops 744 chr1 20964065 20964066 rs3102072 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2425.000000,2583.000000,2583.000000,2425.000000, 0.242113,0.257887,0.257887,0.242113, maf-5-some-pop,maf-5-all-pops 744 chr1 20964241 20964242 rs2298296 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 744 chr1 20964327 20964328 rs2298298 0 + A A A/G genomic single unknown 0 0 intron exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SHGC,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop,maf-5-all-pops 744 chr1 20968010 20968011 rs3102071 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 892.000000,4116.000000,4116.000000,892.000000, 0.089058,0.410942,0.410942,0.089058, maf-5-some-pop,maf-5-all-pops 745 chr1 20974801 20974802 rs2298299 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 A,G, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 745 chr1 20975462 20975463 rs2298300 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,AFFY,CLINSEQ_SNP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,genotype-conflict 745 chr1 20976534 20976535 rs17414302 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 745 chr1 20976999 20977000 rs1043424 0 + A A A/C genomic single unknown 0 0 ncRNA,missense exact 1 32 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CANCER-GENOME,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3503.000000,1505.000000, 0.699481,0.300519, maf-5-some-pop,maf-5-all-pops 745 chr1 20977379 20977380 rs1043443 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 28 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_SNP,SEQUENOM,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1503.000000,3505.000000, 0.300120,0.699880, maf-5-some-pop,maf-5-all-pops 745 chr1 20977598 20977599 rs8064 0 - C C C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SHGC,SI_EXO,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 745 chr1 20977673 20977674 rs16824318 0 + A A A/C genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 745 chr1 20977747 20977748 rs1043502 0 + T T G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SEQUENOM,SHGC,SI_EXO,SSAHASNP,TISHKOFF,TSC-CSHL, 2 G,T, 1502.000000,3506.000000, 0.299920,0.700080, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 20978057 20978058 rs650616 0 + G G A/G genomic single unknown 0 0 near-gene-3,ncRNA exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2422.000000,2586.000000, 0.483626,0.516374, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 20978136 20978137 rs10916843 0 + C C C/T genomic single unknown 0 0 near-gene-3,ncRNA exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SHGC,SI_EXO,TISHKOFF, 2 C,T, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 20979817 20979818 rs622525 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 809.000000,4199.000000, 0.161542,0.838458, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 20980449 20980450 rs2070660 0 - G G A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 853.000000,4155.000000,4155.000000,853.000000, 0.085164,0.414836,0.414836,0.085164, maf-5-some-pop,genotype-conflict 745 chr1 20983862 20983863 rs10799657 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 769.000000,4239.000000, 0.153554,0.846446, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 20984553 20984554 rs640742 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3229.000000,1779.000000,1779.000000,3229.000000, 0.322384,0.177616,0.177616,0.322384, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 745 chr1 20985795 20985796 rs625149 0 + G G A/G genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2761.000000,2247.000000, 0.551318,0.448682, maf-5-some-pop,maf-5-all-pops 745 chr1 20986077 20986078 rs623817 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1704.000000,3304.000000, 0.340256,0.659744, maf-5-some-pop,genotype-conflict 745 chr1 20986556 20986557 rs10916846 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 346.000000,4662.000000, 0.069090,0.930911, maf-5-some-pop 745 chr1 20988756 20988757 rs3753833 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 745 chr1 20988910 20988911 rs3753834 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop 745 chr1 20994951 20994952 rs2170336 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 465.000000,4543.000000,4543.000000,465.000000, 0.046426,0.453574,0.453574,0.046426, maf-5-some-pop 745 chr1 20997309 20997310 rs16824412 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 745 chr1 20997339 20997340 rs10157351 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 2375.000000,2633.000000, 0.474241,0.525759, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 21002801 21002802 rs12026680 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2196.000000,2812.000000, 0.438498,0.561502, maf-5-some-pop,maf-5-all-pops 745 chr1 21004471 21004472 rs685071 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 745 chr1 21009799 21009800 rs4655235 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4293.000000,715.000000, 0.857228,0.142772, maf-5-some-pop 745 chr1 21020404 21020405 rs17407280 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop 745 chr1 21020867 21020868 rs12728802 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop 745 chr1 21021174 21021175 rs2076856 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 329.000000,4679.000000,4679.000000,329.000000, 0.032847,0.467153,0.467153,0.032847, maf-5-some-pop 745 chr1 21021197 21021198 rs535696 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1865.000000,3143.000000, 0.372404,0.627596, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 21021225 21021226 rs536421 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop 745 chr1 21031982 21031983 rs6702859 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3644.000000,1364.000000, 0.727636,0.272364, maf-5-some-pop,genotype-conflict 745 chr1 21032040 21032041 rs752555 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3080.000000,1928.000000, 0.615016,0.384984, maf-5-some-pop,maf-5-all-pops 745 chr1 21033638 21033639 rs875015 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,genotype-conflict 745 chr1 21035107 21035108 rs6426644 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2183.000000,2825.000000, 0.435903,0.564097, maf-5-some-pop,maf-5-all-pops 745 chr1 21035148 21035149 rs6426645 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 1097.000000,3911.000000, 0.219050,0.780950, maf-5-some-pop 745 chr1 21035577 21035578 rs12042868 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops 745 chr1 21040150 21040151 rs10916851 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1387.000000,3621.000000, 0.276957,0.723043, maf-5-some-pop,maf-5-all-pops 745 chr1 21041554 21041555 rs666371 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1461.000000,3547.000000, 0.291733,0.708267, maf-5-some-pop,maf-5-all-pops 745 chr1 21043789 21043790 rs519209 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops,genotype-conflict 745 chr1 21047403 21047404 rs3738144 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop 745 chr1 21047615 21047616 rs637990 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1127.000000,3881.000000,3881.000000,1127.000000, 0.112520,0.387480,0.387480,0.112520, maf-5-some-pop,maf-5-all-pops 745 chr1 21047724 21047725 rs659046 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1328.000000,3680.000000,3680.000000,1328.000000, 0.132588,0.367412,0.367412,0.132588, maf-5-some-pop,maf-5-all-pops 745 chr1 21048116 21048117 rs11578911 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM, 2 A,C, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 745 chr1 21049517 21049518 rs12403580 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3625.000000,1383.000000, 0.723842,0.276158, maf-5-some-pop 745 chr1 21050399 21050400 rs3753046 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop 745 chr1 21050957 21050958 rs592060 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 30 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4405.000000,603.000000,603.000000,4405.000000, 0.439796,0.060204,0.060204,0.439796, maf-5-some-pop 745 chr1 21051714 21051715 rs12069700 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_SNP, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop 745 chr1 21060355 21060356 rs951805 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1194.000000,3814.000000, 0.238419,0.761581, maf-5-some-pop 745 chr1 21067000 21067001 rs12123092 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1892.000000,3116.000000, 0.377796,0.622204, maf-5-some-pop,genotype-conflict 745 chr1 21067505 21067506 rs16824570 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,genotype-conflict 745 chr1 21071966 21071967 rs2274119 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop 745 chr1 21072576 21072577 rs667687 0 + A A A/G genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1446.000000,3562.000000, 0.288738,0.711262, maf-5-some-pop,genotype-conflict 745 chr1 21094432 21094433 rs3014581 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 745 chr1 21097782 21097783 rs651085 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2031.000000,2977.000000, 0.405551,0.594449, maf-5-some-pop,maf-5-all-pops 745 chr1 21100915 21100916 rs10493001 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,genotype-conflict 746 chr1 21106015 21106016 rs1021077 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1807.000000,3201.000000, 0.360823,0.639177, maf-5-some-pop,maf-5-all-pops,genotype-conflict 746 chr1 21114832 21114833 rs3856173 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1791.000000,3217.000000, 0.357628,0.642372, maf-5-some-pop,maf-5-all-pops,genotype-conflict 746 chr1 21123731 21123732 rs10916864 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 746 chr1 21124289 21124290 rs1152998 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3094.000000,1914.000000, 0.617812,0.382188, maf-5-some-pop,maf-5-all-pops 746 chr1 21126409 21126410 rs6687357 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,genotype-conflict 746 chr1 21132574 21132575 rs12565504 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 746 chr1 21145659 21145660 rs935918 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1205.000000,3803.000000,3803.000000,1205.000000, 0.120308,0.379692,0.379692,0.120308, maf-5-some-pop 746 chr1 21147243 21147244 rs6671144 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop,genotype-conflict 746 chr1 21152639 21152640 rs10799665 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1775.000000,3233.000000, 0.354433,0.645567, maf-5-some-pop,maf-5-all-pops 746 chr1 21155194 21155195 rs2320590 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2129.000000,2879.000000, 0.425120,0.574880, maf-5-some-pop 746 chr1 21156666 21156667 rs4654874 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops 746 chr1 21156861 21156862 rs11805169 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1236.000000,3772.000000, 0.246805,0.753195, maf-5-some-pop,genotype-conflict 746 chr1 21164208 21164209 rs7515500 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 746 chr1 21166492 21166493 rs10799667 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 746 chr1 21166637 21166638 rs2320591 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop,genotype-conflict 746 chr1 21167101 21167102 rs935917 0 + T T A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 2996.000000,2012.000000, 0.598243,0.401757, maf-5-some-pop,maf-5-all-pops 746 chr1 21174428 21174429 rs17449243 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop,genotype-conflict 746 chr1 21180012 21180013 rs3767244 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 746 chr1 21199763 21199764 rs10737452 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1532.000000,3476.000000, 0.305911,0.694089, maf-5-some-pop 746 chr1 21199973 21199974 rs10916891 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1945.000000,3063.000000, 0.388379,0.611621, maf-5-some-pop,maf-5-all-pops 746 chr1 21200687 21200688 rs11580341 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 746 chr1 21201324 21201325 rs10916892 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop 746 chr1 21220490 21220491 rs4654885 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop,genotype-conflict 746 chr1 21220673 21220674 rs6704421 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2887.000000,2121.000000, 0.576478,0.423522, maf-5-some-pop,maf-5-all-pops 747 chr1 21234922 21234923 rs4654887 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3318.000000,1690.000000, 0.662540,0.337460, maf-5-some-pop,maf-5-all-pops 747 chr1 21239058 21239059 rs10916900 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3203.000000,1805.000000, 0.639577,0.360423, maf-5-some-pop,maf-5-all-pops 747 chr1 21239333 21239334 rs12726543 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSAHASNP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,genotype-conflict 747 chr1 21244581 21244582 rs10157616 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 747 chr1 21245000 21245001 rs10916901 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 747 chr1 21245834 21245835 rs6667793 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 785.000000,4223.000000, 0.156749,0.843251, maf-5-some-pop 747 chr1 21252645 21252646 rs16824850 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 786.000000,4222.000000, 0.156949,0.843051, maf-5-some-pop,genotype-conflict 747 chr1 21267253 21267254 rs7531492 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops,genotype-conflict 747 chr1 21271871 21271872 rs7554761 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,maf-5-all-pops 747 chr1 21281180 21281181 rs10916908 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 747 chr1 21282283 21282284 rs10916909 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,genotype-conflict 747 chr1 21294334 21294335 rs1869320 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4695.000000,313.000000,313.000000,4695.000000, 0.468750,0.031250,0.031250,0.468750, maf-5-some-pop 747 chr1 21299362 21299363 rs6700718 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 1766.000000,3242.000000, 0.352636,0.647364, maf-5-some-pop,maf-5-all-pops 747 chr1 21306160 21306161 rs12021529 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1941.000000,3067.000000, 0.387580,0.612420, maf-5-some-pop,maf-5-all-pops 747 chr1 21317523 21317524 rs10916919 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1200.000000,3808.000000, 0.239617,0.760383, maf-5-some-pop 747 chr1 21322268 21322269 rs7547482 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 747 chr1 21324490 21324491 rs2874367 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 747 chr1 21355219 21355220 rs7523514 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,genotype-conflict 747 chr1 21355840 21355841 rs6659152 0 + C C C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 3 C,G,T, 3293.000000,1595.000000,120.000000, 0.657548,0.318490,0.023962, maf-5-some-pop,maf-5-all-pops 748 chr1 21374809 21374810 rs6703227 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,maf-5-all-pops 748 chr1 21376913 21376914 rs6426662 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop,genotype-conflict 748 chr1 21391313 21391314 rs6658526 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4045.000000,963.000000, 0.807708,0.192292, maf-5-some-pop,genotype-conflict 748 chr1 21391874 21391875 rs1354792 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1892.000000,3116.000000, 0.377796,0.622204, maf-5-some-pop,maf-5-all-pops 748 chr1 21395356 21395357 rs10916930 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,maf-5-all-pops 748 chr1 21410230 21410231 rs4654899 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1791.000000,3217.000000, 0.357628,0.642372, maf-5-some-pop,maf-5-all-pops 748 chr1 21438238 21438239 rs7532667 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1225.000000,3783.000000, 0.244609,0.755391, maf-5-some-pop 748 chr1 21447934 21447935 rs12402486 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1858.000000,3150.000000, 0.371006,0.628994, maf-5-some-pop,maf-5-all-pops,genotype-conflict 748 chr1 21448681 21448682 rs9426649 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 G,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop 748 chr1 21461552 21461553 rs10799684 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops,genotype-conflict 748 chr1 21462052 21462053 rs9426655 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,C, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 748 chr1 21465594 21465595 rs12754368 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 748 chr1 21468009 21468010 rs4607847 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 748 chr1 21474479 21474480 rs10218584 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 2770.000000,2238.000000, 0.553115,0.446885, maf-5-some-pop,maf-5-all-pops 748 chr1 21484409 21484410 rs4483375 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 749 chr1 21515905 21515906 rs6702110 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop,maf-5-all-pops 749 chr1 21525227 21525228 rs1609558 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1925.000000,3083.000000, 0.384385,0.615615, maf-5-some-pop,maf-5-all-pops 749 chr1 21528834 21528835 rs10916951 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 3800.000000,1208.000000, 0.758786,0.241214, maf-5-some-pop 749 chr1 21543458 21543459 rs3026918 0 - C C A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 13 1000GENOMES,ACEVAN,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 4 A,C,G,T, 751.000000,4257.000000,4257.000000,751.000000, 0.074980,0.425020,0.425020,0.074980, maf-5-some-pop 749 chr1 21544600 21544601 rs3026913 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,ACEVAN,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1550.000000,3458.000000,3458.000000,1550.000000, 0.154752,0.345248,0.345248,0.154752, maf-5-some-pop,maf-5-all-pops,genotype-conflict 749 chr1 21551002 21551003 rs9426746 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 G,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop 749 chr1 21551340 21551341 rs11590928 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop,genotype-conflict 749 chr1 21551456 21551457 rs2038089 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,ACEVAN,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2552.000000,2456.000000, 0.509585,0.490415, maf-5-some-pop,genotype-conflict 749 chr1 21554318 21554319 rs6426676 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop 749 chr1 21557690 21557691 rs9287035 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 G,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 749 chr1 21571130 21571131 rs212509 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ACEVAN,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 441.000000,4567.000000, 0.088059,0.911941, maf-5-some-pop,genotype-conflict 749 chr1 21576795 21576796 rs9426750 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop 749 chr1 21579333 21579334 rs16825157 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 749 chr1 21581764 21581765 rs2282715 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ACEVAN,AFFY,BGI,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1487.000000,3521.000000,3521.000000,1487.000000, 0.148462,0.351538,0.351538,0.148462, maf-5-some-pop,genotype-conflict 749 chr1 21584584 21584585 rs212525 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1237.000000,3771.000000,3771.000000,1237.000000, 0.123502,0.376498,0.376498,0.123502, maf-5-some-pop,genotype-conflict 749 chr1 21584940 21584941 rs212526 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 32 1000GENOMES,ABI,ACEVAN,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1200.000000,3808.000000,3808.000000,1200.000000, 0.119808,0.380192,0.380192,0.119808, maf-5-some-pop 749 chr1 21585660 21585661 rs212528 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ACEVAN,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4343.000000,665.000000,665.000000,4343.000000, 0.433606,0.066394,0.066394,0.433606, maf-5-some-pop,genotype-conflict 749 chr1 21588115 21588116 rs2282713 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1580.000000,3428.000000,3428.000000,1580.000000, 0.157748,0.342252,0.342252,0.157748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 749 chr1 21590753 21590754 rs212534 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1693.000000,3315.000000,3315.000000,1693.000000, 0.169030,0.330970,0.330970,0.169030, maf-5-some-pop 749 chr1 21592391 21592392 rs212539 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1141.000000,3867.000000,3867.000000,1141.000000, 0.113918,0.386082,0.386082,0.113918, maf-5-some-pop,genotype-conflict 749 chr1 21593116 21593117 rs212540 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3831.000000,1177.000000,1177.000000,3831.000000, 0.382488,0.117512,0.117512,0.382488, maf-5-some-pop 749 chr1 21595552 21595553 rs1067216 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EGP_SNPS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop 749 chr1 21597940 21597941 rs3026869 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ACEVAN,AFFY,EGP_SNPS,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 4971.000000,37.000000,37.000000,4971.000000, 0.496306,0.003694,0.003694,0.496306, 749 chr1 21598135 21598136 rs3026868 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ACEVAN,AFFY,BCMHGSC_JDW,EGP_SNPS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 4 A,C,G,T, 193.000000,4815.000000,4815.000000,193.000000, 0.019269,0.480731,0.480731,0.019269, maf-5-some-pop 749 chr1 21606782 21606783 rs212544 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ACEVAN,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop,genotype-conflict 749 chr1 21621535 21621536 rs213051 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 G,T, 2341.000000,2667.000000, 0.467452,0.532548, maf-5-some-pop,maf-5-all-pops 750 chr1 21633966 21633967 rs11810746 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop 750 chr1 21636795 21636796 rs12746281 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 750 chr1 21637315 21637316 rs7525186 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop 750 chr1 21639624 21639625 rs3026838 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,ACEVAN,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP, 4 A,C,G,T, 228.000000,4780.000000,4780.000000,228.000000, 0.022764,0.477236,0.477236,0.022764, maf-5-some-pop 750 chr1 21639934 21639935 rs3026837 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ACEVAN,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4327.000000,681.000000,681.000000,4327.000000, 0.432009,0.067991,0.067991,0.432009, maf-5-some-pop,genotype-conflict 750 chr1 21639983 21639984 rs3026836 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ACEVAN,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 230.000000,4778.000000,4778.000000,230.000000, 0.022963,0.477037,0.477037,0.022963, maf-5-some-pop,genotype-conflict 750 chr1 21640394 21640395 rs213011 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 870.000000,4138.000000, 0.173722,0.826278, maf-5-some-pop 750 chr1 21640500 21640501 rs12116775 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop 750 chr1 21640564 21640565 rs169884 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop,maf-5-all-pops,genotype-conflict 750 chr1 21641521 21641522 rs84853 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2662.000000,2346.000000,2346.000000,2662.000000, 0.265775,0.234225,0.234225,0.265775, maf-5-some-pop,genotype-conflict 750 chr1 21642412 21642413 rs213012 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop,maf-5-all-pops 750 chr1 21643744 21643745 rs213014 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2301.000000,2707.000000, 0.459465,0.540535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 750 chr1 21644870 21644871 rs1111878 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ACEVAN,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop 750 chr1 21646509 21646510 rs2774026 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 322.000000,4686.000000,4686.000000,322.000000, 0.032149,0.467851,0.467851,0.032149, maf-5-some-pop,maf-5-all-pops,genotype-conflict 750 chr1 21646530 21646531 rs213018 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop,maf-5-all-pops,genotype-conflict 750 chr1 21651574 21651575 rs213025 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3776.000000,1232.000000, 0.753994,0.246006, maf-5-some-pop,maf-5-all-pops 750 chr1 21652176 21652177 rs213028 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2742.000000,2266.000000, 0.547524,0.452476, maf-5-some-pop,maf-5-all-pops 750 chr1 21655312 21655313 rs213035 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop,genotype-conflict 750 chr1 21655883 21655884 rs213037 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1618.000000,3390.000000, 0.323083,0.676917, maf-5-some-pop 750 chr1 21660474 21660475 rs213062 0 - T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 750 chr1 21664474 21664475 rs3026815 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,ACEVAN,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1158.000000,3850.000000,3850.000000,1158.000000, 0.115615,0.384385,0.384385,0.115615, maf-5-some-pop,maf-5-all-pops 750 chr1 21668691 21668692 rs3026812 0 - A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ACEVAN,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 750 chr1 21668872 21668873 rs11805268 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 560.000000,4448.000000, 0.111821,0.888179, maf-5-some-pop 750 chr1 21669466 21669467 rs10916961 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4441.000000,567.000000, 0.886781,0.113219, maf-5-some-pop,maf-5-all-pops 750 chr1 21669800 21669801 rs3026806 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ACEVAN,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 4 A,C,G,T, 141.000000,4867.000000,4867.000000,141.000000, 0.014077,0.485923,0.485923,0.014077, maf-5-some-pop,maf-5-all-pops 750 chr1 21670058 21670059 rs3026804 0 - C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ACEVAN,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 750 chr1 21675843 21675844 rs2176877 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2066.000000,2942.000000, 0.412540,0.587460, maf-5-some-pop,maf-5-all-pops 750 chr1 21675952 21675953 rs12137689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop 750 chr1 21685444 21685445 rs16825276 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3970.000000,1038.000000, 0.792732,0.207268, maf-5-some-pop,genotype-conflict 750 chr1 21687756 21687757 rs12084005 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 750 chr1 21687853 21687854 rs2796354 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2015.000000,2993.000000, 0.402356,0.597644, maf-5-some-pop,maf-5-all-pops,genotype-conflict 750 chr1 21688140 21688141 rs2682362 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1323.000000,3685.000000,3685.000000,1323.000000, 0.132089,0.367911,0.367911,0.132089, maf-5-some-pop,genotype-conflict 750 chr1 21688418 21688419 rs2796355 0 + G G G/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2014.000000,2994.000000, 0.402157,0.597843, maf-5-some-pop,maf-5-all-pops,genotype-conflict 750 chr1 21696435 21696436 rs785195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1735.000000,3273.000000, 0.346446,0.653554, maf-5-some-pop,maf-5-all-pops 750 chr1 21697468 21697469 rs785198 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 750 chr1 21699338 21699339 rs785205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop,genotype-conflict 750 chr1 21705310 21705311 rs4463635 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 750 chr1 21705377 21705378 rs4614227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop,genotype-conflict 750 chr1 21705451 21705452 rs4314858 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop 750 chr1 21705474 21705475 rs6426680 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 9 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 3 C,G,T, 4693.000000,110.000000,205.000000, 0.937101,0.021965,0.040934, maf-5-some-pop 750 chr1 21711730 21711731 rs10916972 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4080.000000,928.000000, 0.814696,0.185304, maf-5-some-pop 750 chr1 21723128 21723129 rs2682360 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 133.000000,4875.000000,4875.000000,133.000000, 0.013279,0.486721,0.486721,0.013279, maf-5-some-pop 750 chr1 21734461 21734462 rs1935574 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop 750 chr1 21736326 21736327 rs12750103 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,G, 4418.000000,590.000000, 0.882188,0.117812, maf-5-some-pop 750 chr1 21737465 21737466 rs1566524 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 3 C,G,T, 2935.000000,25.000000,2048.000000, 0.586062,0.004992,0.408946, maf-5-some-pop,maf-5-all-pops 750 chr1 21742736 21742737 rs10916983 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop,maf-5-all-pops 750 chr1 21756168 21756169 rs904937 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,EVA-GONL,GMI,KRIBB_YJKIM,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 751 chr1 21769996 21769997 rs10916992 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 751 chr1 21784298 21784299 rs4385671 0 + C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop,maf-5-all-pops 751 chr1 21790720 21790721 rs10916995 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 A,G, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop 751 chr1 21794060 21794061 rs17420195 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop 751 chr1 21804456 21804457 rs7518950 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop 751 chr1 21805047 21805048 rs4654947 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop,maf-5-all-pops 751 chr1 21819737 21819738 rs12082914 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3630.000000,1378.000000, 0.724840,0.275160, maf-5-some-pop 751 chr1 21820857 21820858 rs16825415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop 751 chr1 21820989 21820990 rs10799701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops,microattr-tpa 751 chr1 21821756 21821757 rs1780324 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2534.000000,2474.000000,2474.000000,2534.000000, 0.252995,0.247005,0.247005,0.252995, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa 751 chr1 21823291 21823292 rs1697421 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1891.000000,3117.000000,3117.000000,1891.000000, 0.188798,0.311202,0.311202,0.188798, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 751 chr1 21823628 21823629 rs1697420 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3585.000000,1423.000000,1423.000000,3585.000000, 0.357927,0.142073,0.142073,0.357927, maf-5-some-pop,maf-5-all-pops 751 chr1 21824107 21824108 rs1780321 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2729.000000,2279.000000,2279.000000,2729.000000, 0.272464,0.227536,0.227536,0.272464, maf-5-some-pop,maf-5-all-pops,genotype-conflict 751 chr1 21824987 21824988 rs16825427 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4966.000000,42.000000, 0.991613,0.008387, maf-5-some-pop 751 chr1 21825035 21825036 rs16825429 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 43.000000,4965.000000, 0.008586,0.991414, 751 chr1 21826565 21826566 rs6667242 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3990.000000,1018.000000, 0.796725,0.203275, maf-5-some-pop,genotype-conflict 751 chr1 21836933 21836934 rs6703976 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3873.000000,1135.000000, 0.773363,0.226637, maf-5-some-pop,maf-5-all-pops,genotype-conflict 751 chr1 21840708 21840709 rs7535497 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1711.000000,3297.000000, 0.341653,0.658347, maf-5-some-pop,genotype-conflict 751 chr1 21840885 21840886 rs7523855 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3298.000000,1710.000000, 0.658546,0.341454, maf-5-some-pop,maf-5-all-pops 751 chr1 21841362 21841363 rs1500932 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,BUSHMAN,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4939.000000,69.000000,69.000000,4939.000000, 0.493111,0.006889,0.006889,0.493111, maf-5-some-pop 751 chr1 21843255 21843256 rs12116570 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 G,T, 515.000000,4493.000000, 0.102835,0.897165, maf-5-some-pop,genotype-conflict 751 chr1 21843607 21843608 rs4654755 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops,genotype-conflict 751 chr1 21844821 21844822 rs7536545 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops 751 chr1 21857247 21857248 rs10493007 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 751 chr1 21861655 21861656 rs2840331 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1600.000000,3408.000000,3408.000000,1600.000000, 0.159744,0.340256,0.340256,0.159744, maf-5-some-pop,maf-5-all-pops 751 chr1 21863366 21863367 rs16825522 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,HGSV,KRIBB_YJKIM,PERLEGEN, 2 A,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,genotype-conflict 751 chr1 21863955 21863956 rs1780315 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3584.000000,1424.000000,1424.000000,3584.000000, 0.357827,0.142173,0.142173,0.357827, maf-5-some-pop,maf-5-all-pops,genotype-conflict 751 chr1 21866563 21866564 rs7547128 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2762.000000,2246.000000, 0.551518,0.448482, maf-5-some-pop,maf-5-all-pops 751 chr1 21866624 21866625 rs12565845 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 751 chr1 21870725 21870726 rs9662008 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4597.000000,411.000000, 0.917931,0.082069, maf-5-some-pop 751 chr1 21873001 21873002 rs12141569 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1682.000000,3326.000000, 0.335863,0.664137, maf-5-some-pop,maf-5-all-pops 751 chr1 21874995 21874996 rs1697414 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 751 chr1 21875389 21875390 rs6658127 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 751 chr1 21876491 21876492 rs1256342 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 483.000000,4525.000000,4525.000000,483.000000, 0.048223,0.451777,0.451777,0.048223, maf-5-some-pop 751 chr1 21880067 21880068 rs950922 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3533.000000,1475.000000,1475.000000,3533.000000, 0.352736,0.147264,0.147264,0.352736, maf-5-some-pop,maf-5-all-pops 751 chr1 21882819 21882820 rs1780327 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1368.000000,3640.000000,3640.000000,1368.000000, 0.136581,0.363419,0.363419,0.136581, maf-5-some-pop,maf-5-all-pops 752 chr1 21891733 21891734 rs1256334 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 360.000000,4648.000000,4648.000000,360.000000, 0.035942,0.464058,0.464058,0.035942, maf-5-some-pop,genotype-conflict 752 chr1 21894306 21894307 rs10917008 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1590.000000,3418.000000, 0.317492,0.682508, maf-5-some-pop,maf-5-all-pops 752 chr1 21894784 21894785 rs3738098 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 4 A,C,G,T, 918.000000,4090.000000,4090.000000,918.000000, 0.091653,0.408347,0.408347,0.091653, maf-5-some-pop,maf-5-all-pops 752 chr1 21894815 21894816 rs3738097 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3670.000000,1338.000000,1338.000000,3670.000000, 0.366414,0.133586,0.133586,0.366414, maf-5-some-pop 752 chr1 21894994 21894995 rs3738095 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 752 chr1 21895007 21895008 rs1256331 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 4 A,C,G,T, 407.000000,4601.000000,4601.000000,407.000000, 0.040635,0.459365,0.459365,0.040635, maf-5-some-pop 752 chr1 21895801 21895802 rs3767145 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3650.000000,1358.000000,1358.000000,3650.000000, 0.364417,0.135583,0.135583,0.364417, maf-5-some-pop,maf-5-all-pops 752 chr1 21899490 21899491 rs1780320 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 595.000000,4413.000000,4413.000000,595.000000, 0.059405,0.440595,0.440595,0.059405, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21900419 21900420 rs2275370 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1235.000000,3773.000000,3773.000000,1235.000000, 0.123303,0.376697,0.376697,0.123303, maf-5-some-pop,maf-5-all-pops 752 chr1 21900443 21900444 rs2275369 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3646.000000,1362.000000,1362.000000,3646.000000, 0.364018,0.135982,0.135982,0.364018, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21901456 21901457 rs1697404 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1299.000000,3709.000000, 0.259385,0.740615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21901557 21901558 rs3767142 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1457.000000,3551.000000,3551.000000,1457.000000, 0.145467,0.354533,0.354533,0.145467, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21917233 21917234 rs10917021 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21921057 21921058 rs829391 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3740.000000,1268.000000, 0.746805,0.253195, maf-5-some-pop,maf-5-all-pops 752 chr1 21933192 21933193 rs829370 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop,microattr-tpa,genotype-conflict 752 chr1 21935466 21935467 rs12130950 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 752 chr1 21936908 21936909 rs9426672 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,genotype-conflict 752 chr1 21937316 21937317 rs12083062 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4641.000000,367.000000, 0.926717,0.073283, maf-5-some-pop,genotype-conflict 752 chr1 21941022 21941023 rs947333 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4483.000000,525.000000, 0.895168,0.104832, maf-5-some-pop,genotype-conflict 752 chr1 21942956 21942957 rs7550977 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 752 chr1 21943503 21943504 rs829418 0 + A A A/G genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 407.000000,4601.000000, 0.081270,0.918730, maf-5-some-pop,microattr-tpa 752 chr1 21943819 21943820 rs2275360 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1633.000000,3375.000000,3375.000000,1633.000000, 0.163039,0.336961,0.336961,0.163039, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21947850 21947851 rs710946 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 800.000000,4208.000000,4208.000000,800.000000, 0.079872,0.420128,0.420128,0.079872, maf-5-some-pop 752 chr1 21949461 21949462 rs829406 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3794.000000,1214.000000, 0.757588,0.242412, maf-5-some-pop,maf-5-all-pops 752 chr1 21953137 21953138 rs829411 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1330.000000,3678.000000, 0.265575,0.734425, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21953286 21953287 rs7354914 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 775.000000,4233.000000, 0.154752,0.845248, maf-5-some-pop,maf-5-all-pops 752 chr1 21953303 21953304 rs1531829 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1939.000000,3069.000000, 0.387181,0.612819, maf-5-some-pop,maf-5-all-pops 752 chr1 21953435 21953436 rs829412 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 682.000000,4326.000000, 0.136182,0.863818, maf-5-some-pop,genotype-conflict 752 chr1 21957238 21957239 rs9426674 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1169.000000,3839.000000, 0.233427,0.766573, maf-5-some-pop,maf-5-all-pops 752 chr1 21958586 21958587 rs10799705 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4129.000000,879.000000, 0.824481,0.175519, maf-5-some-pop 752 chr1 21959589 21959590 rs9426772 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1981.000000,3027.000000, 0.395567,0.604433, maf-5-some-pop,maf-5-all-pops 752 chr1 21962550 21962551 rs6679565 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1158.000000,3850.000000, 0.231230,0.768770, maf-5-some-pop,maf-5-all-pops 752 chr1 21972479 21972480 rs6426721 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2382.000000,2626.000000, 0.475639,0.524361, maf-5-some-pop,genotype-conflict 752 chr1 21974833 21974834 rs4654975 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1828.000000,3180.000000, 0.365016,0.634984, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21988562 21988563 rs829373 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3973.000000,1035.000000, 0.793331,0.206669, maf-5-some-pop,maf-5-all-pops 752 chr1 21989374 21989375 rs6426723 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 752 chr1 21992567 21992568 rs931252 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1721.000000,3287.000000, 0.343650,0.656350, maf-5-some-pop,maf-5-all-pops 752 chr1 21992599 21992600 rs710948 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop 752 chr1 21993169 21993170 rs829377 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 359.000000,4649.000000,4649.000000,359.000000, 0.035843,0.464157,0.464157,0.035843, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21997281 21997282 rs3738091 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1766.000000,3242.000000, 0.352636,0.647364, maf-5-some-pop,maf-5-all-pops,genotype-conflict 752 chr1 21997977 21997978 rs829399 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop 752 chr1 21998837 21998838 rs12036106 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4309.000000,699.000000, 0.860423,0.139577, maf-5-some-pop 752 chr1 22000025 22000026 rs3818942 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4271.000000,737.000000,737.000000,4271.000000, 0.426418,0.073582,0.073582,0.426418, maf-5-some-pop,genotype-conflict 752 chr1 22001420 22001421 rs17457107 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 752 chr1 22002866 22002867 rs12128325 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 757.000000,4251.000000, 0.151158,0.848842, maf-5-some-pop 752 chr1 22003366 22003367 rs10917033 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 752 chr1 22003665 22003666 rs16825800 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 752 chr1 22003792 22003793 rs829396 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 891.000000,4117.000000, 0.177915,0.822085, maf-5-some-pop,maf-5-all-pops 752 chr1 22006720 22006721 rs3767132 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 752 chr1 22008797 22008798 rs12404648 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 752 chr1 22016718 22016719 rs1618590 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 114.000000,4894.000000,4894.000000,114.000000, 0.011382,0.488618,0.488618,0.011382, maf-5-some-pop,genotype-conflict 752 chr1 22018934 22018935 rs829384 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1021.000000,3987.000000, 0.203874,0.796126, maf-5-some-pop 753 chr1 22020151 22020152 rs3767133 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop 753 chr1 22020327 22020328 rs3767134 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 753 chr1 22021861 22021862 rs16825823 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop 753 chr1 22028803 22028804 rs16825842 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 753 chr1 22029246 22029247 rs10917036 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop 753 chr1 22033943 22033944 rs333170 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop 753 chr1 22035859 22035860 rs16825856 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 21.000000,4987.000000, 0.004193,0.995807, maf-5-some-pop 753 chr1 22036255 22036256 rs482791 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 149.000000,4859.000000,4859.000000,149.000000, 0.014876,0.485124,0.485124,0.014876, maf-5-some-pop 753 chr1 22038986 22038987 rs523504 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1400.000000,3608.000000,3608.000000,1400.000000, 0.139776,0.360224,0.360224,0.139776, maf-5-some-pop,genotype-conflict 753 chr1 22048650 22048651 rs900489 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4281.000000,727.000000, 0.854832,0.145168, maf-5-some-pop 753 chr1 22048663 22048664 rs12030578 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4094.000000,914.000000, 0.817492,0.182508, maf-5-some-pop 753 chr1 22063148 22063149 rs10753517 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2935.000000,2073.000000, 0.586062,0.413938, maf-5-some-pop,maf-5-all-pops 753 chr1 22067337 22067338 rs333174 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3672.000000,1336.000000,1336.000000,3672.000000, 0.366613,0.133387,0.133387,0.366613, maf-5-some-pop,maf-5-all-pops,genotype-conflict 753 chr1 22067907 22067908 rs7526162 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,genotype-conflict 753 chr1 22068258 22068259 rs1384673 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 796.000000,4212.000000,4212.000000,796.000000, 0.079473,0.420527,0.420527,0.079473, maf-5-some-pop,maf-5-all-pops,genotype-conflict 753 chr1 22069791 22069792 rs333177 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 753 chr1 22075824 22075825 rs333190 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 753 chr1 22076704 22076705 rs2315931 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3398.000000,1610.000000,1610.000000,3398.000000, 0.339257,0.160743,0.160743,0.339257, maf-5-some-pop,maf-5-all-pops 753 chr1 22077671 22077672 rs333195 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3675.000000,1333.000000,1333.000000,3675.000000, 0.366913,0.133087,0.133087,0.366913, maf-5-some-pop 753 chr1 22086166 22086167 rs7521867 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3515.000000,1493.000000, 0.701877,0.298123, maf-5-some-pop,maf-5-all-pops 753 chr1 22088840 22088841 rs6667223 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2641.000000,2367.000000, 0.527356,0.472644, maf-5-some-pop,maf-5-all-pops 753 chr1 22102159 22102160 rs6668648 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 753 chr1 22109369 22109370 rs10917042 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SSMP, 4 A,C,G,T, 1411.000000,3597.000000,3597.000000,1411.000000, 0.140875,0.359125,0.359125,0.140875, maf-5-some-pop 753 chr1 22110071 22110072 rs2315930 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 127.000000,4881.000000,4881.000000,127.000000, 0.012680,0.487320,0.487320,0.012680, maf-5-some-pop 753 chr1 22116811 22116812 rs10753520 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 753 chr1 22121366 22121367 rs10917043 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4039.000000,969.000000, 0.806510,0.193490, maf-5-some-pop 753 chr1 22124165 22124166 rs10917047 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 753 chr1 22138466 22138467 rs6656070 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1933.000000,3075.000000, 0.385982,0.614018, maf-5-some-pop,maf-5-all-pops 753 chr1 22147076 22147077 rs4654770 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 787.000000,4221.000000, 0.157149,0.842851, maf-5-some-pop 754 chr1 22152193 22152194 rs12040859 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop 754 chr1 22160110 22160111 rs17459139 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop,genotype-conflict 754 chr1 22168215 22168216 rs7556412 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1884.000000,3124.000000, 0.376198,0.623802, maf-5-some-pop,genotype-conflict 754 chr1 22168309 22168310 rs12043008 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3658.000000,1350.000000, 0.730431,0.269569, maf-5-some-pop,maf-5-all-pops 754 chr1 22174517 22174518 rs12737091 0 + G G G/T genomic single unknown 0 0 coding-synon exact 1 14 1000GENOMES,ABI,AFFY,CLINSEQ_SNP,CORNELL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSAHASNP,SSMP, 2 G,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop 754 chr1 22174910 22174911 rs12741617 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 754 chr1 22190932 22190933 rs12404444 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 506.000000,4502.000000, 0.101038,0.898962, maf-5-some-pop 754 chr1 22191030 22191031 rs897472 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4672.000000,336.000000,336.000000,4672.000000, 0.466454,0.033546,0.033546,0.466454, maf-5-some-pop 754 chr1 22198189 22198190 rs11586789 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 754 chr1 22201795 22201796 rs7355175 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop 754 chr1 22206648 22206649 rs989994 0 + T T C/T genomic single unknown 0 0 missense exact 1 32 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WICVAR,WI_SSAHASNP, 2 C,T, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 754 chr1 22208863 22208864 rs2445138 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop 754 chr1 22217899 22217900 rs10799718 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1610.000000,3398.000000, 0.321486,0.678514, maf-5-some-pop,maf-5-all-pops 754 chr1 22220609 22220610 rs7520609 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,genotype-conflict 754 chr1 22222454 22222455 rs1869780 0 + G G G/T genomic single unknown 0 0 missense,untranslated-5 exact 1 11 1000GENOMES,ABI,AFFY,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TSC-CSHL, 2 G,T, 4996.000000,12.000000, 0.997604,0.002396, genotype-conflict 754 chr1 22224101 22224102 rs11810496 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3724.000000,1284.000000, 0.743610,0.256390, maf-5-some-pop 754 chr1 22225742 22225743 rs2445142 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2649.000000,2359.000000, 0.528954,0.471046, maf-5-some-pop,maf-5-all-pops 754 chr1 22226122 22226123 rs12097123 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop 754 chr1 22227090 22227091 rs878949 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3238.000000,1770.000000, 0.646565,0.353435, maf-5-some-pop,maf-5-all-pops 754 chr1 22228835 22228836 rs2501257 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2402.000000,2606.000000,2606.000000,2402.000000, 0.239816,0.260184,0.260184,0.239816, maf-5-some-pop,maf-5-all-pops 754 chr1 22229089 22229090 rs6680566 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1559.000000,3449.000000, 0.311302,0.688698, maf-5-some-pop,maf-5-all-pops 754 chr1 22231445 22231446 rs16826031 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 777.000000,4231.000000, 0.155152,0.844848, maf-5-some-pop 754 chr1 22238774 22238775 rs1002480 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 754 chr1 22244022 22244023 rs6698486 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3067.000000,1941.000000, 0.612420,0.387580, maf-5-some-pop,maf-5-all-pops 754 chr1 22249056 22249057 rs9426783 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1336.000000,3672.000000, 0.266773,0.733227, maf-5-some-pop,maf-5-all-pops 754 chr1 22251606 22251607 rs7512059 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 754 chr1 22251800 22251801 rs9426787 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 754 chr1 22252261 22252262 rs4654773 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2046.000000,2962.000000, 0.408546,0.591454, maf-5-some-pop,maf-5-all-pops,genotype-conflict 754 chr1 22252789 22252790 rs9426790 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 754 chr1 22255683 22255684 rs16826053 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop 754 chr1 22265292 22265293 rs10917067 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 1580.000000,3428.000000, 0.315495,0.684505, maf-5-some-pop 754 chr1 22273832 22273833 rs16826074 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 754 chr1 22275695 22275696 rs7531732 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop 754 chr1 22276057 22276058 rs12025633 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 755 chr1 22282618 22282619 rs7529220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3752.000000,1256.000000, 0.749201,0.250799, maf-5-some-pop,maf-5-all-pops,genotype-conflict 755 chr1 22287865 22287866 rs17427572 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,genotype-conflict 755 chr1 22287940 22287941 rs12410694 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1242.000000,3766.000000, 0.248003,0.751997, maf-5-some-pop 755 chr1 22290034 22290035 rs4585955 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 430.000000,4578.000000, 0.085863,0.914137, maf-5-some-pop 755 chr1 22290155 22290156 rs8179387 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3801.000000,1207.000000, 0.758986,0.241014, maf-5-some-pop 755 chr1 22292265 22292266 rs6699127 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1656.000000,3352.000000, 0.330671,0.669329, maf-5-some-pop 755 chr1 22293896 22293897 rs12745683 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1271.000000,3737.000000, 0.253794,0.746206, maf-5-some-pop 755 chr1 22296306 22296307 rs10917079 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 A,C, 1245.000000,3763.000000, 0.248602,0.751398, maf-5-some-pop 755 chr1 22297425 22297426 rs7527325 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 755 chr1 22298007 22298008 rs10917084 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, 755 chr1 22300464 22300465 rs7537004 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,T, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop 755 chr1 22309873 22309874 rs6698785 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop 755 chr1 22310261 22310262 rs10733033 0 + G G C/G genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4404.000000,604.000000, 0.879393,0.120607, maf-5-some-pop 755 chr1 22311907 22311908 rs7520526 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 755 chr1 22320514 22320515 rs7529773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 AFFY,CSHL-HAPMAP,GMI,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 175.000000,611.000000, 0.222646,0.777354, maf-5-some-pop,maf-5-all-pops 755 chr1 22320634 22320635 rs28429707 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,ENSEMBL,GMI,KRIBB_YJKIM,SSAHASNP,SSMP, 2 A,G, 1522.000000,3486.000000, 0.303914,0.696086, maf-5-some-pop,maf-5-all-pops 755 chr1 22324704 22324705 rs7534936 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 2706.000000,2302.000000, 0.540335,0.459665, maf-5-some-pop,maf-5-all-pops 755 chr1 22326880 22326881 rs4532803 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2726.000000,2282.000000, 0.544329,0.455671, maf-5-some-pop,maf-5-all-pops 755 chr1 22328278 22328279 rs12751986 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,genotype-conflict 755 chr1 22328517 22328518 rs12070671 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 755 chr1 22330538 22330539 rs4556328 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,G, 893.000000,4115.000000, 0.178315,0.821685, maf-5-some-pop 755 chr1 22345092 22345093 rs3117048 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1992.000000,3016.000000,3016.000000,1992.000000, 0.198882,0.301118,0.301118,0.198882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 755 chr1 22345646 22345647 rs2501299 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2699.000000,2309.000000,2309.000000,2699.000000, 0.269469,0.230531,0.230531,0.269469, maf-5-some-pop,maf-5-all-pops 755 chr1 22348555 22348556 rs11586488 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 909.000000,4099.000000, 0.181510,0.818490, maf-5-some-pop 755 chr1 22358054 22358055 rs760922 0 - T T A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 141.000000,4867.000000,4867.000000,141.000000, 0.014077,0.485923,0.485923,0.014077, maf-5-some-pop,genotype-conflict 755 chr1 22361844 22361845 rs2473277 0 - G G C/T genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2837.000000,2171.000000,2171.000000,2837.000000, 0.283247,0.216753,0.216753,0.283247, maf-5-some-pop,maf-5-all-pops 755 chr1 22373623 22373624 rs2501276 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 372.000000,4636.000000,4636.000000,372.000000, 0.037141,0.462859,0.462859,0.037141, maf-5-some-pop,microattr-tpa,genotype-conflict 755 chr1 22384712 22384713 rs12035094 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 755 chr1 22386929 22386930 rs16826283 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BL,BUSHMAN,EGP_SNPS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 C,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop 755 chr1 22388890 22388891 rs2473324 0 - G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 755 chr1 22391766 22391767 rs16826354 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop 755 chr1 22394624 22394625 rs17837965 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop,genotype-conflict 755 chr1 22395250 22395251 rs2473317 0 - C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 755 chr1 22401537 22401538 rs10917139 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 594.000000,4414.000000, 0.118610,0.881390, maf-5-some-pop,genotype-conflict 755 chr1 22408464 22408465 rs2056976 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4866.000000,142.000000,142.000000,4866.000000, 0.485823,0.014177,0.014177,0.485823, maf-5-some-pop 755 chr1 22408526 22408527 rs2056975 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 213.000000,4795.000000,4795.000000,213.000000, 0.021266,0.478734,0.478734,0.021266, maf-5-some-pop 755 chr1 22409093 22409094 rs2056974 0 - T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 755 chr1 22412644 22412645 rs10917145 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop 756 chr1 22415409 22415410 rs2268177 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 3872.000000,1136.000000, 0.773163,0.226837, maf-5-some-pop 756 chr1 22415679 22415680 rs10917148 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 756 chr1 22415940 22415941 rs763442 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 142.000000,4866.000000,4866.000000,142.000000, 0.014177,0.485823,0.485823,0.014177, maf-5-some-pop 756 chr1 22425630 22425631 rs16826593 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,genotype-conflict 756 chr1 22425641 22425642 rs10917152 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop,genotype-conflict 756 chr1 22425861 22425862 rs16826595 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,genotype-conflict 756 chr1 22435146 22435147 rs11804768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 756 chr1 22435722 22435723 rs2092322 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 756 chr1 22436445 22436446 rs7412010 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP, 2 C,G, 1083.000000,3925.000000, 0.216254,0.783746, maf-5-some-pop,genotype-conflict 756 chr1 22442024 22442025 rs1474646 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 766.000000,4242.000000,4242.000000,766.000000, 0.076478,0.423522,0.423522,0.076478, maf-5-some-pop 756 chr1 22442982 22442983 rs7522784 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 756 chr1 22443759 22443760 rs2235530 0 - C C A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,YUSUKE, 4 A,C,G,T, 383.000000,4625.000000,4625.000000,383.000000, 0.038239,0.461761,0.461761,0.038239, maf-5-some-pop 756 chr1 22444489 22444490 rs4655023 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,genotype-conflict 756 chr1 22444809 22444810 rs7552004 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 MixedObserved 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4825.000000,183.000000, 0.963458,0.036542, maf-5-some-pop 756 chr1 22445990 22445991 rs3765351 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2165.000000,2843.000000,2843.000000,2165.000000, 0.216154,0.283846,0.283846,0.216154, maf-5-some-pop,maf-5-all-pops 756 chr1 22446264 22446265 rs2072920 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SHGC,SSMP,YUSUKE, 4 A,C,G,T, 4739.000000,269.000000,269.000000,4739.000000, 0.473143,0.026857,0.026857,0.473143, maf-5-some-pop 756 chr1 22453323 22453324 rs10917157 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop,genotype-conflict 756 chr1 22455141 22455142 rs7544210 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2218.000000,2790.000000, 0.442891,0.557109, maf-5-some-pop,maf-5-all-pops 756 chr1 22473409 22473410 rs7515106 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2215.000000,2793.000000, 0.442292,0.557708, maf-5-some-pop,maf-5-all-pops 756 chr1 22473657 22473658 rs4655026 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2152.000000,2856.000000, 0.429712,0.570288, maf-5-some-pop,maf-5-all-pops 756 chr1 22475815 22475816 rs10493011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,microattr-tpa,genotype-conflict 756 chr1 22477492 22477493 rs7542242 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3382.000000,1626.000000, 0.675319,0.324681, maf-5-some-pop,maf-5-all-pops 756 chr1 22480158 22480159 rs7517829 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2841.000000,2167.000000, 0.567292,0.432708, maf-5-some-pop,maf-5-all-pops 756 chr1 22485842 22485843 rs2807364 0 - G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 756 chr1 22485870 22485871 rs16826658 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1659.000000,3349.000000, 0.331270,0.668730, maf-5-some-pop,microattr-tpa 756 chr1 22487499 22487500 rs1569580 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL, 2 C,T, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop 756 chr1 22491983 22491984 rs2807357 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3543.000000,1465.000000,1465.000000,3543.000000, 0.353734,0.146266,0.146266,0.353734, maf-5-some-pop,genotype-conflict 756 chr1 22492886 22492887 rs3920498 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1184.000000,3824.000000, 0.236422,0.763578, maf-5-some-pop,maf-5-all-pops 756 chr1 22493017 22493018 rs16826677 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop 756 chr1 22493671 22493672 rs2807356 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 799.000000,4209.000000,4209.000000,799.000000, 0.079772,0.420228,0.420228,0.079772, maf-5-some-pop,genotype-conflict 756 chr1 22493976 22493977 rs2807355 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 647.000000,4361.000000,4361.000000,647.000000, 0.064597,0.435403,0.435403,0.064597, maf-5-some-pop,maf-5-all-pops 756 chr1 22494626 22494627 rs7534624 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3579.000000,1429.000000, 0.714657,0.285343, maf-5-some-pop,maf-5-all-pops 756 chr1 22496702 22496703 rs909813 0 + G G A/G genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop,maf-5-all-pops 756 chr1 22501715 22501716 rs16826705 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 756 chr1 22503775 22503776 rs10737465 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3032.000000,1976.000000, 0.605431,0.394569, maf-5-some-pop,maf-5-all-pops 756 chr1 22504271 22504272 rs2982282 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 756 chr1 22507422 22507423 rs2807346 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1686.000000,3322.000000,3322.000000,1686.000000, 0.168331,0.331669,0.331669,0.168331, maf-5-some-pop,maf-5-all-pops 756 chr1 22508649 22508650 rs6690588 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop 756 chr1 22508798 22508799 rs6678085 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3623.000000,1385.000000, 0.723442,0.276558, maf-5-some-pop,maf-5-all-pops 756 chr1 22508921 22508922 rs2807370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3171.000000,1837.000000, 0.633187,0.366813, maf-5-some-pop,maf-5-all-pops 756 chr1 22509205 22509206 rs2807371 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1838.000000,3170.000000, 0.367013,0.632987, maf-5-some-pop,maf-5-all-pops 756 chr1 22514069 22514070 rs2744716 0 + T T G/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3371.000000,1637.000000, 0.673123,0.326877, maf-5-some-pop,maf-5-all-pops 756 chr1 22514235 22514236 rs10753531 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops,genotype-conflict 756 chr1 22516419 22516420 rs2807377 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop 756 chr1 22519422 22519423 rs10799738 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4394.000000,614.000000, 0.877396,0.122604, maf-5-some-pop 756 chr1 22520750 22520751 rs4625251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 756 chr1 22523726 22523727 rs2744718 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3432.000000,1576.000000, 0.685304,0.314696, maf-5-some-pop,maf-5-all-pops,genotype-conflict 756 chr1 22523963 22523964 rs12086521 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,C, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop,genotype-conflict 756 chr1 22524135 22524136 rs10917173 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop,genotype-conflict 756 chr1 22526813 22526814 rs2870446 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2274.000000,2734.000000,2734.000000,2274.000000, 0.227037,0.272963,0.272963,0.227037, maf-5-some-pop,maf-5-all-pops,genotype-conflict 756 chr1 22528406 22528407 rs16826758 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop,genotype-conflict 756 chr1 22529766 22529767 rs2744719 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2060.000000,2948.000000, 0.411342,0.588658, maf-5-some-pop,maf-5-all-pops 756 chr1 22531133 22531134 rs926435 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 756 chr1 22531552 22531553 rs17356059 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3998.000000,1010.000000, 0.798323,0.201677, maf-5-some-pop,genotype-conflict 756 chr1 22535810 22535811 rs2473247 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3652.000000,1356.000000, 0.729233,0.270767, maf-5-some-pop,maf-5-all-pops,genotype-conflict 756 chr1 22536533 22536534 rs17356087 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,genotype-conflict 756 chr1 22536898 22536899 rs4655032 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1053.000000,3955.000000, 0.210264,0.789736, maf-5-some-pop 756 chr1 22537648 22537649 rs2473250 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3718.000000,1290.000000, 0.742412,0.257588, maf-5-some-pop,maf-5-all-pops,genotype-conflict 756 chr1 22543588 22543589 rs11576292 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop,maf-5-all-pops 757 chr1 22547289 22547290 rs7552560 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3848.000000,1160.000000, 0.768371,0.231629, maf-5-some-pop,maf-5-all-pops 757 chr1 22547351 22547352 rs1569583 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1602.000000,3406.000000, 0.319888,0.680112, maf-5-some-pop,maf-5-all-pops 757 chr1 22547478 22547479 rs2505709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2575.000000,2433.000000, 0.514177,0.485823, maf-5-some-pop,maf-5-all-pops 757 chr1 22549396 22549397 rs2491213 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2383.000000,2625.000000,2625.000000,2383.000000, 0.237919,0.262081,0.262081,0.237919, maf-5-some-pop,maf-5-all-pops 757 chr1 22549728 22549729 rs2744734 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3793.000000,1215.000000, 0.757388,0.242612, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22549763 22549764 rs17356177 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,genotype-conflict 757 chr1 22550623 22550624 rs732266 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2615.000000,2393.000000, 0.522165,0.477835, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22550957 22550958 rs2010062 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3789.000000,1219.000000,1219.000000,3789.000000, 0.378295,0.121705,0.121705,0.378295, maf-5-some-pop,maf-5-all-pops 757 chr1 22551812 22551813 rs2744738 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2524.000000,2484.000000, 0.503994,0.496006, maf-5-some-pop,maf-5-all-pops 757 chr1 22551924 22551925 rs2505711 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2394.000000,2614.000000, 0.478035,0.521965, maf-5-some-pop,maf-5-all-pops 757 chr1 22552735 22552736 rs1806422 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1109.000000,3899.000000,3899.000000,1109.000000, 0.110723,0.389277,0.389277,0.110723, maf-5-some-pop,maf-5-all-pops 757 chr1 22552936 22552937 rs2807378 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 124.000000,4884.000000,4884.000000,124.000000, 0.012380,0.487620,0.487620,0.012380, maf-5-some-pop 757 chr1 22552968 22552969 rs3856181 0 - C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 757 chr1 22553477 22553478 rs12749135 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3969.000000,1039.000000, 0.792532,0.207468, maf-5-some-pop 757 chr1 22559929 22559930 rs2807323 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP, 2 C,T, 1386.000000,3622.000000, 0.276757,0.723243, maf-5-some-pop,maf-5-all-pops 757 chr1 22561284 22561285 rs16826818 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,C, 3816.000000,1192.000000, 0.761981,0.238019, maf-5-some-pop 757 chr1 22563492 22563493 rs2807326 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 A,G, 1348.000000,3660.000000, 0.269169,0.730831, maf-5-some-pop,maf-5-all-pops 757 chr1 22564304 22564305 rs2807328 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop,genotype-conflict 757 chr1 22564786 22564787 rs12128603 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4139.000000,869.000000, 0.826478,0.173522, maf-5-some-pop,genotype-conflict 757 chr1 22565370 22565371 rs2744741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2903.000000,2105.000000, 0.579673,0.420327, maf-5-some-pop,maf-5-all-pops 757 chr1 22565424 22565425 rs6682936 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 3 A,C,G, 74.000000,4927.000000,7.000000, 0.014776,0.983826,0.001398, maf-5-some-pop,genotype-conflict 757 chr1 22573225 22573226 rs2744749 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop,maf-5-all-pops 757 chr1 22573258 22573259 rs10489160 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 901.000000,4107.000000, 0.179912,0.820088, maf-5-some-pop 757 chr1 22574425 22574426 rs2744750 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2048.000000,2960.000000, 0.408946,0.591054, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22575939 22575940 rs875975 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4055.000000,953.000000, 0.809704,0.190296, maf-5-some-pop,genotype-conflict 757 chr1 22576326 22576327 rs2744753 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop 757 chr1 22576397 22576398 rs875976 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2943.000000,2065.000000, 0.587660,0.412340, maf-5-some-pop,maf-5-all-pops 757 chr1 22577055 22577056 rs16826845 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 757 chr1 22578062 22578063 rs2807339 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 757 chr1 22578435 22578436 rs2143101 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1317.000000,3691.000000, 0.262979,0.737021, maf-5-some-pop,maf-5-all-pops 757 chr1 22579797 22579798 rs2744759 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2123.000000,2885.000000, 0.423922,0.576078, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22596599 22596600 rs2473241 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3470.000000,1538.000000, 0.692891,0.307109, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22600671 22600672 rs4654792 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops 757 chr1 22603365 22603366 rs909812 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3855.000000,1153.000000, 0.769768,0.230232, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22603660 22603661 rs1076678 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 925.000000,4083.000000,4083.000000,925.000000, 0.092352,0.407648,0.407648,0.092352, maf-5-some-pop,maf-5-all-pops 757 chr1 22603800 22603801 rs12045854 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4246.000000,762.000000, 0.847843,0.152157, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22612689 22612690 rs12737805 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4042.000000,966.000000, 0.807109,0.192891, maf-5-some-pop,maf-5-all-pops 757 chr1 22614838 22614839 rs1007243 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop 757 chr1 22615739 22615740 rs12734427 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop,maf-5-all-pops 757 chr1 22615803 22615804 rs17360519 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, maf-5-some-pop,genotype-conflict 757 chr1 22616582 22616583 rs1980473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1184.000000,3824.000000, 0.236422,0.763578, maf-5-some-pop,maf-5-all-pops 757 chr1 22622512 22622513 rs10917196 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2698.000000,2310.000000, 0.538738,0.461262, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22622956 22622957 rs4654793 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,genotype-conflict 757 chr1 22623862 22623863 rs10799744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 854.000000,4154.000000, 0.170527,0.829473, maf-5-some-pop,maf-5-all-pops 757 chr1 22624510 22624511 rs6426743 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 757 chr1 22625245 22625246 rs10799746 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3658.000000,1350.000000, 0.730431,0.269569, maf-5-some-pop,maf-5-all-pops 757 chr1 22626369 22626370 rs10917200 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3661.000000,1347.000000, 0.731030,0.268970, maf-5-some-pop,maf-5-all-pops 757 chr1 22629056 22629057 rs6426746 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop,genotype-conflict 757 chr1 22629187 22629188 rs7538267 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1202.000000,3806.000000, 0.240016,0.759984, maf-5-some-pop 757 chr1 22629354 22629355 rs12026987 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3976.000000,1032.000000, 0.793930,0.206070, maf-5-some-pop,maf-5-all-pops 757 chr1 22629386 22629387 rs4654794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop,genotype-conflict 757 chr1 22636658 22636659 rs4589079 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4421.000000,587.000000, 0.882788,0.117212, maf-5-some-pop,genotype-conflict 757 chr1 22636807 22636808 rs4589080 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2386.000000,2622.000000, 0.476438,0.523562, maf-5-some-pop 757 chr1 22639160 22639161 rs7531369 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop,maf-5-all-pops,genotype-conflict 757 chr1 22640191 22640192 rs4598465 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2377.000000,2631.000000, 0.474641,0.525359, maf-5-some-pop,maf-5-all-pops 757 chr1 22644856 22644857 rs16826918 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop 757 chr1 22648410 22648411 rs6690148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,maf-5-all-pops 757 chr1 22649486 22649487 rs11580218 0 + G G A/C/G/T genomic single unknown 0 0 missense exact 1 SingleClassQuadAllelic,InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 3 A,G,T, 66.000000,4311.000000,631.000000, 0.013179,0.860823,0.125998, maf-5-some-pop,genotype-conflict 757 chr1 22649993 22649994 rs10917209 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3287.000000,1721.000000, 0.656350,0.343650, maf-5-some-pop,maf-5-all-pops 757 chr1 22653549 22653550 rs4433361 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3375.000000,1633.000000, 0.673922,0.326078, maf-5-some-pop,maf-5-all-pops 757 chr1 22659242 22659243 rs6660965 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop 757 chr1 22664773 22664774 rs1934477 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 757 chr1 22665209 22665210 rs1934478 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2899.000000,2109.000000, 0.578874,0.421126, maf-5-some-pop,maf-5-all-pops 757 chr1 22666979 22666980 rs11584197 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop 757 chr1 22672845 22672846 rs10493012 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4659.000000,349.000000, 0.930312,0.069688, maf-5-some-pop,genotype-conflict 758 chr1 22675845 22675846 rs3856183 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1487.000000,3521.000000, 0.296925,0.703075, maf-5-some-pop 758 chr1 22682132 22682133 rs11578020 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop 758 chr1 22682365 22682366 rs12742784 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops,genotype-conflict 758 chr1 22683404 22683405 rs10917220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3477.000000,1531.000000, 0.694289,0.305711, maf-5-some-pop,maf-5-all-pops 758 chr1 22684754 22684755 rs12756978 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1363.000000,3645.000000, 0.272165,0.727835, maf-5-some-pop,maf-5-all-pops 758 chr1 22686492 22686493 rs12029258 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop 758 chr1 22688588 22688589 rs4233286 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2715.000000,2293.000000, 0.542133,0.457867, maf-5-some-pop,maf-5-all-pops 758 chr1 22689803 22689804 rs1320596 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 841.000000,4167.000000,4167.000000,841.000000, 0.083966,0.416034,0.416034,0.083966, maf-5-some-pop,genotype-conflict 758 chr1 22690382 22690383 rs12048775 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 840.000000,4168.000000, 0.167732,0.832268, maf-5-some-pop 758 chr1 22698446 22698447 rs7524102 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PAGE_STUDY,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3855.000000,1153.000000, 0.769768,0.230232, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa 758 chr1 22704633 22704634 rs11576345 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 G,T, 360.000000,4648.000000, 0.071885,0.928115, maf-5-some-pop 758 chr1 22705664 22705665 rs1320601 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 4 A,C,G,T, 200.000000,4808.000000,4808.000000,200.000000, 0.019968,0.480032,0.480032,0.019968, maf-5-some-pop 758 chr1 22706578 22706579 rs1317353 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1127.000000,3881.000000,3881.000000,1127.000000, 0.112520,0.387480,0.387480,0.112520, maf-5-some-pop,maf-5-all-pops 758 chr1 22707564 22707565 rs6426748 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4097.000000,911.000000, 0.818091,0.181909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 758 chr1 22709135 22709136 rs10917221 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop 758 chr1 22711207 22711208 rs6657950 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 C,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 758 chr1 22711377 22711378 rs7550872 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop,maf-5-all-pops 758 chr1 22722373 22722374 rs6677957 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4154.000000,854.000000, 0.829473,0.170527, maf-5-some-pop,maf-5-all-pops 758 chr1 22725824 22725825 rs2185341 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3598.000000,1410.000000, 0.718450,0.281550, maf-5-some-pop,maf-5-all-pops,genotype-conflict 758 chr1 22726677 22726678 rs17471975 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3352.000000,1656.000000, 0.669329,0.330671, maf-5-some-pop,maf-5-all-pops 758 chr1 22731268 22731269 rs7543680 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,maf-5-all-pops 758 chr1 22732517 22732518 rs4394609 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop,maf-5-all-pops,genotype-conflict 758 chr1 22732702 22732703 rs4609399 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1523.000000,3485.000000, 0.304113,0.695887, maf-5-some-pop,maf-5-all-pops,genotype-conflict 758 chr1 22732748 22732749 rs4409621 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop,maf-5-all-pops 758 chr1 22734590 22734591 rs10799749 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3028.000000,1980.000000, 0.604633,0.395367, maf-5-some-pop,maf-5-all-pops 758 chr1 22739167 22739168 rs6426754 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1587.000000,3421.000000, 0.316893,0.683107, maf-5-some-pop,maf-5-all-pops 758 chr1 22740364 22740365 rs7547689 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3362.000000,1646.000000, 0.671326,0.328674, maf-5-some-pop,maf-5-all-pops 758 chr1 22758582 22758583 rs6426755 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 758 chr1 22760899 22760900 rs11591062 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop 758 chr1 22761944 22761945 rs6685039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 758 chr1 22780926 22780927 rs12133700 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop,genotype-conflict 758 chr1 22782601 22782602 rs10917234 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2766.000000,2242.000000, 0.552316,0.447684, maf-5-some-pop,maf-5-all-pops 758 chr1 22790454 22790455 rs4233289 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops,genotype-conflict 758 chr1 22802071 22802072 rs1267001 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1004.000000,4004.000000,4004.000000,1004.000000, 0.100240,0.399760,0.399760,0.100240, maf-5-some-pop 759 chr1 22811522 22811523 rs1769820 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1701.000000,3307.000000, 0.339657,0.660343, maf-5-some-pop,maf-5-all-pops 759 chr1 22811806 22811807 rs10917238 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2735.000000,2273.000000, 0.546126,0.453874, maf-5-some-pop,maf-5-all-pops,genotype-conflict 759 chr1 22814288 22814289 rs4655067 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop,genotype-conflict 759 chr1 22814353 22814354 rs4655068 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3152.000000,1856.000000, 0.629393,0.370607, maf-5-some-pop,maf-5-all-pops 759 chr1 22821967 22821968 rs209753 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops,genotype-conflict 759 chr1 22822669 22822670 rs10799757 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2089.000000,2919.000000, 0.417133,0.582867, maf-5-some-pop,maf-5-all-pops 759 chr1 22827930 22827931 rs4655071 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3000.000000,2008.000000, 0.599042,0.400958, maf-5-some-pop,maf-5-all-pops 759 chr1 22829422 22829423 rs1267006 0 - T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 759 chr1 22831960 22831961 rs10917243 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1851.000000,3157.000000, 0.369609,0.630391, maf-5-some-pop,maf-5-all-pops 759 chr1 22835676 22835677 rs209729 0 - A A C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 32 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 889.000000,4119.000000,4119.000000,889.000000, 0.088758,0.411242,0.411242,0.088758, maf-5-some-pop,genotype-conflict 759 chr1 22836498 22836499 rs3754010 0 - A A A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4993.000000,15.000000,15.000000,4993.000000, 0.498502,0.001498,0.001498,0.498502, maf-5-some-pop,maf-5-all-pops,genotype-conflict 759 chr1 22843427 22843428 rs209722 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2439.000000,2569.000000,2569.000000,2439.000000, 0.243510,0.256490,0.256490,0.243510, maf-5-some-pop,maf-5-all-pops,genotype-conflict 759 chr1 22844950 22844951 rs104861 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 759 chr1 22846451 22846452 rs7551801 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3209.000000,1799.000000, 0.640775,0.359225, maf-5-some-pop,maf-5-all-pops 759 chr1 22847796 22847797 rs12754103 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop 759 chr1 22852903 22852904 rs2281355 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,YUSUKE, 4 A,C,G,T, 575.000000,4433.000000,4433.000000,575.000000, 0.057408,0.442592,0.442592,0.057408, maf-5-some-pop 759 chr1 22856338 22856339 rs12406194 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop 759 chr1 22857251 22857252 rs962889 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 2 A,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop 759 chr1 22863679 22863680 rs12756490 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1729.000000,3279.000000, 0.345248,0.654752, maf-5-some-pop,maf-5-all-pops 759 chr1 22871311 22871312 rs209714 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 426.000000,4582.000000,4582.000000,426.000000, 0.042532,0.457468,0.457468,0.042532, maf-5-some-pop 759 chr1 22871712 22871713 rs209713 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 440.000000,4568.000000,4568.000000,440.000000, 0.043930,0.456070,0.456070,0.043930, maf-5-some-pop 759 chr1 22872686 22872687 rs766910 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop,maf-5-all-pops,genotype-conflict 759 chr1 22875878 22875879 rs209710 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2139.000000,2869.000000,2869.000000,2139.000000, 0.213558,0.286442,0.286442,0.213558, maf-5-some-pop,maf-5-all-pops 759 chr1 22877239 22877240 rs11584687 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3395.000000,1613.000000, 0.677915,0.322085, maf-5-some-pop,maf-5-all-pops 759 chr1 22887433 22887434 rs742775 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 759 chr1 22894651 22894652 rs209749 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3764.000000,1244.000000,1244.000000,3764.000000, 0.375799,0.124201,0.124201,0.375799, maf-5-some-pop,maf-5-all-pops 759 chr1 22911377 22911378 rs482156 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1641.000000,3367.000000,3367.000000,1641.000000, 0.163838,0.336162,0.336162,0.163838, maf-5-some-pop,maf-5-all-pops 759 chr1 22914159 22914160 rs3767555 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 759 chr1 22916670 22916671 rs10917263 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,genotype-conflict 759 chr1 22922025 22922026 rs209693 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2294.000000,2714.000000, 0.458067,0.541933, maf-5-some-pop,maf-5-all-pops 759 chr1 22924782 22924783 rs11586741 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP, 2 C,T, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,genotype-conflict 759 chr1 22932161 22932162 rs12128121 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop,genotype-conflict 759 chr1 22932513 22932514 rs632684 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 785.000000,4223.000000, 0.156749,0.843251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 759 chr1 22934643 22934644 rs209705 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4239.000000,769.000000,769.000000,4239.000000, 0.423223,0.076777,0.076777,0.423223, maf-5-some-pop,maf-5-all-pops,genotype-conflict 760 chr1 22946546 22946547 rs158771 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1152.000000,3856.000000,3856.000000,1152.000000, 0.115016,0.384984,0.384984,0.115016, maf-5-some-pop,maf-5-all-pops 760 chr1 22946766 22946767 rs7536607 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,genotype-conflict 760 chr1 22952385 22952386 rs186037 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3889.000000,1119.000000,1119.000000,3889.000000, 0.388279,0.111721,0.111721,0.388279, maf-5-some-pop,maf-5-all-pops,genotype-conflict 760 chr1 22952822 22952823 rs158762 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3254.000000,1754.000000,1754.000000,3254.000000, 0.324880,0.175120,0.175120,0.324880, maf-5-some-pop,maf-5-all-pops,genotype-conflict 760 chr1 22958317 22958318 rs587585 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3855.000000,1153.000000,1153.000000,3855.000000, 0.384884,0.115116,0.115116,0.384884, maf-5-some-pop,maf-5-all-pops 760 chr1 22960353 22960354 rs665691 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 760 chr1 22961523 22961524 rs680123 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1813.000000,3195.000000, 0.362021,0.637979, maf-5-some-pop,maf-5-all-pops 760 chr1 22963470 22963471 rs2935542 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PJP,SC_JCM,SNP500CANCER,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4396.000000,612.000000, 0.877796,0.122204, maf-5-some-pop 760 chr1 22965002 22965003 rs12740591 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SNP500CANCER,SSAHASNP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 760 chr1 22969939 22969940 rs6676997 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 760 chr1 22972097 22972098 rs294183 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2959.000000,2049.000000,2049.000000,2959.000000, 0.295427,0.204573,0.204573,0.295427, maf-5-some-pop,maf-5-all-pops 760 chr1 22977221 22977222 rs291992 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1662.000000,3346.000000,3346.000000,1662.000000, 0.165935,0.334065,0.334065,0.165935, maf-5-some-pop 760 chr1 22977882 22977883 rs12734877 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2702.000000,2306.000000, 0.539537,0.460463, maf-5-some-pop,maf-5-all-pops 760 chr1 22980613 22980614 rs291987 0 + T T G/T genomic single unknown 0 0 intron,untranslated-5 exact 1 15 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop 760 chr1 22980685 22980686 rs291986 0 + C C C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 760 chr1 22981129 22981130 rs291984 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4977.000000,31.000000,31.000000,4977.000000, 0.496905,0.003095,0.003095,0.496905, 760 chr1 22981875 22981876 rs12756603 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3682.000000,1326.000000, 0.735224,0.264776, maf-5-some-pop,maf-5-all-pops 760 chr1 22982065 22982066 rs12722729 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1326.000000,3682.000000, 0.264776,0.735224, maf-5-some-pop,genotype-conflict 760 chr1 22986402 22986403 rs631090 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1282.000000,3726.000000, 0.255990,0.744010, maf-5-some-pop,genotype-conflict 760 chr1 22986737 22986738 rs629409 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1534.000000,3474.000000,3474.000000,1534.000000, 0.153155,0.346845,0.346845,0.153155, maf-5-some-pop,maf-5-all-pops,genotype-conflict 760 chr1 22989697 22989698 rs12040131 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 760 chr1 22989744 22989745 rs292010 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 767.000000,4241.000000,4241.000000,767.000000, 0.076577,0.423423,0.423423,0.076577, maf-5-some-pop 760 chr1 22990707 22990708 rs292009 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3681.000000,1327.000000,1327.000000,3681.000000, 0.367512,0.132488,0.132488,0.367512, maf-5-some-pop,maf-5-all-pops 760 chr1 22993334 22993335 rs292005 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1571.000000,3437.000000,3437.000000,1571.000000, 0.156849,0.343151,0.343151,0.156849, maf-5-some-pop 760 chr1 22993713 22993714 rs292004 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4857.000000,151.000000,151.000000,4857.000000, 0.484924,0.015076,0.015076,0.484924, maf-5-some-pop 760 chr1 22994963 22994964 rs292000 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1514.000000,3494.000000,3494.000000,1514.000000, 0.151158,0.348842,0.348842,0.151158, maf-5-some-pop 760 chr1 23000591 23000592 rs12085531 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop 760 chr1 23002458 23002459 rs294216 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,genotype-conflict 760 chr1 23007174 23007175 rs17486657 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop,genotype-conflict 760 chr1 23011970 23011971 rs167157 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3031.000000,1977.000000,1977.000000,3031.000000, 0.302616,0.197384,0.197384,0.302616, maf-5-some-pop,maf-5-all-pops 760 chr1 23019543 23019544 rs294230 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3405.000000,1603.000000, 0.679912,0.320088, maf-5-some-pop,genotype-conflict 760 chr1 23020256 23020257 rs2869514 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 314.000000,4694.000000,4694.000000,314.000000, 0.031350,0.468650,0.468650,0.031350, maf-5-some-pop 760 chr1 23020538 23020539 rs294206 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1603.000000,3405.000000,3405.000000,1603.000000, 0.160044,0.339956,0.339956,0.160044, maf-5-some-pop 760 chr1 23020562 23020563 rs294207 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,BUSHMAN,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4953.000000,55.000000,55.000000,4953.000000, 0.494509,0.005491,0.005491,0.494509, maf-5-some-pop 760 chr1 23031405 23031406 rs6687402 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 760 chr1 23031450 23031451 rs6676345 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3000.000000,2008.000000, 0.599042,0.400958, maf-5-some-pop,maf-5-all-pops 760 chr1 23038731 23038732 rs10917279 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4681.000000,327.000000, 0.934704,0.065296, maf-5-some-pop,genotype-conflict 760 chr1 23042126 23042127 rs6695566 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop,genotype-conflict 760 chr1 23044180 23044181 rs10917280 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3321.000000,1687.000000, 0.663139,0.336861, maf-5-some-pop 760 chr1 23044222 23044223 rs893960 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop 760 chr1 23045942 23045943 rs2869513 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3292.000000,1716.000000,1716.000000,3292.000000, 0.328674,0.171326,0.171326,0.328674, maf-5-some-pop 760 chr1 23048062 23048063 rs10917282 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1487.000000,3521.000000, 0.296925,0.703075, maf-5-some-pop 760 chr1 23050351 23050352 rs882025 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2925.000000,2083.000000, 0.584065,0.415935, maf-5-some-pop 760 chr1 23053535 23053536 rs16827476 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop 760 chr1 23060249 23060250 rs12566963 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,KRIBB_YJKIM, 2 C,T, 4961.000000,47.000000, 0.990615,0.009385, maf-5-some-pop 760 chr1 23061364 23061365 rs10442639 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 3416.000000,1592.000000, 0.682109,0.317891, maf-5-some-pop,genotype-conflict 760 chr1 23061550 23061551 rs6687487 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 626.000000,4382.000000, 0.125000,0.875000, maf-5-some-pop 760 chr1 23061991 23061992 rs10753541 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2307.000000,2701.000000, 0.460663,0.539337, maf-5-some-pop,maf-5-all-pops 760 chr1 23062907 23062908 rs10917284 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1936.000000,3072.000000, 0.386581,0.613419, maf-5-some-pop 760 chr1 23063929 23063930 rs4263970 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3350.000000,1658.000000, 0.668930,0.331070, maf-5-some-pop,genotype-conflict 760 chr1 23065119 23065120 rs16827484 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 761 chr1 23071844 23071845 rs10917288 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,G, 3634.000000,1374.000000, 0.725639,0.274361, maf-5-some-pop 761 chr1 23073166 23073167 rs6698922 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4506.000000,502.000000, 0.899760,0.100240, maf-5-some-pop,maf-5-all-pops 761 chr1 23073621 23073622 rs6686970 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,genotype-conflict 761 chr1 23076915 23076916 rs10157808 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 761 chr1 23081926 23081927 rs4655099 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop,genotype-conflict 761 chr1 23082135 23082136 rs4655102 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop,genotype-conflict 761 chr1 23086095 23086096 rs893964 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1414.000000,3594.000000,3594.000000,1414.000000, 0.141174,0.358826,0.358826,0.141174, maf-5-some-pop,maf-5-all-pops 761 chr1 23089260 23089261 rs2582021 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 162.000000,4846.000000,4846.000000,162.000000, 0.016174,0.483826,0.483826,0.016174, maf-5-some-pop,genotype-conflict 761 chr1 23092065 23092066 rs3122405 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,C, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 761 chr1 23094420 23094421 rs4654814 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4232.000000,776.000000, 0.845048,0.154952, maf-5-some-pop 761 chr1 23096817 23096818 rs7516175 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop 761 chr1 23101687 23101688 rs1561624 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1544.000000,3464.000000,3464.000000,1544.000000, 0.154153,0.345847,0.345847,0.154153, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23106473 23106474 rs2817907 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1164.000000,3844.000000,3844.000000,1164.000000, 0.116214,0.383786,0.383786,0.116214, maf-5-some-pop 761 chr1 23109290 23109291 rs2817901 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 962.000000,4046.000000,4046.000000,962.000000, 0.096046,0.403954,0.403954,0.096046, maf-5-some-pop,maf-5-all-pops 761 chr1 23112368 23112369 rs10799762 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop,maf-5-all-pops 761 chr1 23113909 23113910 rs12076863 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop 761 chr1 23115748 23115749 rs12724658 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2602.000000,2406.000000, 0.519569,0.480431, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23115938 23115939 rs11801544 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 761 chr1 23117459 23117460 rs10799764 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop 761 chr1 23118172 23118173 rs893961 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3309.000000,1699.000000,1699.000000,3309.000000, 0.330371,0.169629,0.169629,0.330371, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23122539 23122540 rs16827555 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop 761 chr1 23123330 23123331 rs1866792 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3542.000000,1466.000000,1466.000000,3542.000000, 0.353634,0.146366,0.146366,0.353634, maf-5-some-pop,maf-5-all-pops 761 chr1 23127875 23127876 rs4506436 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3375.000000,1633.000000, 0.673922,0.326078, maf-5-some-pop,maf-5-all-pops 761 chr1 23128715 23128716 rs7530478 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop 761 chr1 23128939 23128940 rs2582036 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 761 chr1 23137630 23137631 rs4655117 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3004.000000,2004.000000, 0.599840,0.400160, maf-5-some-pop,maf-5-all-pops 761 chr1 23137760 23137761 rs12723359 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2368.000000,2640.000000, 0.472843,0.527157, maf-5-some-pop,maf-5-all-pops 761 chr1 23142350 23142351 rs2165332 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3199.000000,1809.000000,1809.000000,3199.000000, 0.319389,0.180611,0.180611,0.319389, maf-5-some-pop,maf-5-all-pops 761 chr1 23142495 23142496 rs7536195 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop 761 chr1 23142715 23142716 rs12143574 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3938.000000,1070.000000, 0.786342,0.213658, maf-5-some-pop,maf-5-all-pops 761 chr1 23143777 23143778 rs751023 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,TSC-CSHL, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23145238 23145239 rs6667416 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 798.000000,4210.000000, 0.159345,0.840655, maf-5-some-pop 761 chr1 23147402 23147403 rs4589082 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,T, 4364.000000,644.000000, 0.871406,0.128594, maf-5-some-pop 761 chr1 23147540 23147541 rs10917307 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1111.000000,3897.000000, 0.221845,0.778155, maf-5-some-pop,maf-5-all-pops 761 chr1 23148335 23148336 rs4361967 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 761 chr1 23148918 23148919 rs4654819 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop,maf-5-all-pops 761 chr1 23151875 23151876 rs10799766 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops 761 chr1 23152987 23152988 rs6701399 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2999.000000,2009.000000, 0.598842,0.401158, maf-5-some-pop,maf-5-all-pops 761 chr1 23155230 23155231 rs12090415 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2189.000000,2819.000000, 0.437101,0.562899, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23156101 23156102 rs12027585 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4364.000000,644.000000, 0.871406,0.128594, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23156288 23156289 rs6687094 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2189.000000,2819.000000, 0.437101,0.562899, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23158121 23158122 rs10753545 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2313.000000,2695.000000, 0.461861,0.538139, maf-5-some-pop,maf-5-all-pops 761 chr1 23162807 23162808 rs10917317 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2815.000000,2193.000000, 0.562101,0.437899, maf-5-some-pop,maf-5-all-pops 761 chr1 23164755 23164756 rs16827646 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1257.000000,3751.000000, 0.250998,0.749002, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23168960 23168961 rs12404289 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2570.000000,2438.000000, 0.513179,0.486821, maf-5-some-pop,maf-5-all-pops 761 chr1 23169502 23169503 rs4655128 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3238.000000,1770.000000, 0.646565,0.353435, maf-5-some-pop,maf-5-all-pops,genotype-conflict 761 chr1 23169527 23169528 rs4655129 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop,maf-5-all-pops 761 chr1 23174162 23174163 rs12061624 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3539.000000,1469.000000, 0.706669,0.293331, maf-5-some-pop 761 chr1 23174590 23174591 rs7519206 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1075.000000,3933.000000, 0.214657,0.785343, maf-5-some-pop 761 chr1 23175150 23175151 rs6667289 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 761 chr1 23175355 23175356 rs6658894 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop 761 chr1 23175993 23175994 rs4655130 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3574.000000,1434.000000, 0.713658,0.286342, maf-5-some-pop 761 chr1 23176739 23176740 rs4427376 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SC_JCM, 2 A,C, 38.000000,4970.000000, 0.007588,0.992412, 761 chr1 23176758 23176759 rs17488885 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop 761 chr1 23182683 23182684 rs16827672 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1672.000000,3336.000000, 0.333866,0.666134, maf-5-some-pop 761 chr1 23184205 23184206 rs7413155 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1576.000000,3432.000000, 0.314696,0.685304, maf-5-some-pop 761 chr1 23184263 23184264 rs10753546 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 761 chr1 23185448 23185449 rs16827678 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 761 chr1 23189058 23189059 rs6703896 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop,genotype-conflict 761 chr1 23197524 23197525 rs2138542 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4274.000000,734.000000,734.000000,4274.000000, 0.426717,0.073283,0.073283,0.426717, maf-5-some-pop 761 chr1 23197912 23197913 rs2817893 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 105.000000,4903.000000,4903.000000,105.000000, 0.010483,0.489517,0.489517,0.010483, maf-5-some-pop 761 chr1 23198618 23198619 rs4655134 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2034.000000,2974.000000, 0.406150,0.593850, maf-5-some-pop 761 chr1 23199310 23199311 rs16827697 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop,genotype-conflict 761 chr1 23199401 23199402 rs7554093 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2934.000000,2074.000000, 0.585863,0.414137, maf-5-some-pop,genotype-conflict 761 chr1 23199725 23199726 rs4654825 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop 762 chr1 23199948 23199949 rs4655136 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 762 chr1 23200128 23200129 rs16827699 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 762 chr1 23200158 23200159 rs4147362 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 762 chr1 23204182 23204183 rs12239985 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 762 chr1 23205317 23205318 rs7528104 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 762 chr1 23206683 23206684 rs10799771 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3720.000000,1288.000000, 0.742812,0.257188, maf-5-some-pop,microattr-tpa 762 chr1 23207351 23207352 rs10158095 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop 762 chr1 23209277 23209278 rs10917325 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 3572.000000,1436.000000, 0.713259,0.286741, maf-5-some-pop 762 chr1 23209561 23209562 rs170129 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 560.000000,4448.000000,4448.000000,560.000000, 0.055911,0.444089,0.444089,0.055911, maf-5-some-pop,genotype-conflict 762 chr1 23212739 23212740 rs309476 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2160.000000,2848.000000,2848.000000,2160.000000, 0.215655,0.284345,0.284345,0.215655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23215594 23215595 rs2765849 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 705.000000,4303.000000,4303.000000,705.000000, 0.070387,0.429613,0.429613,0.070387, maf-5-some-pop 762 chr1 23217803 23217804 rs2765854 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4511.000000,497.000000,497.000000,4511.000000, 0.450379,0.049621,0.049621,0.450379, maf-5-some-pop 762 chr1 23218713 23218714 rs309473 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 762 chr1 23220025 23220026 rs309471 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1777.000000,3231.000000,3231.000000,1777.000000, 0.177416,0.322584,0.322584,0.177416, maf-5-some-pop,maf-5-all-pops 762 chr1 23225321 23225322 rs309543 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1272.000000,3736.000000,3736.000000,1272.000000, 0.126997,0.373003,0.373003,0.126997, maf-5-some-pop 762 chr1 23226073 23226074 rs2675495 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 762 chr1 23229176 23229177 rs7340102 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2029.000000,2979.000000, 0.405152,0.594848, maf-5-some-pop,maf-5-all-pops 762 chr1 23229639 23229640 rs10799772 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,C, 3945.000000,1063.000000, 0.787740,0.212260, maf-5-some-pop 762 chr1 23234945 23234946 rs309499 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2271.000000,2737.000000,2737.000000,2271.000000, 0.226737,0.273263,0.273263,0.226737, maf-5-some-pop,maf-5-all-pops 762 chr1 23237824 23237825 rs2817890 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 291.000000,4717.000000,4717.000000,291.000000, 0.029054,0.470946,0.470946,0.029054, maf-5-some-pop 762 chr1 23238022 23238023 rs309495 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1253.000000,3755.000000,3755.000000,1253.000000, 0.125100,0.374900,0.374900,0.125100, maf-5-some-pop,maf-5-all-pops 762 chr1 23241600 23241601 rs2295022 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,YUSUKE, 2 C,T, 4997.000000,11.000000, 0.997804,0.002196, 762 chr1 23247394 23247395 rs744834 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1361.000000,3647.000000,3647.000000,1361.000000, 0.135883,0.364117,0.364117,0.135883, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23259626 23259627 rs2817899 0 - T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23259640 23259641 rs4655137 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3652.000000,1356.000000, 0.729233,0.270767, maf-5-some-pop,maf-5-all-pops 762 chr1 23266339 23266340 rs6701919 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,G, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,genotype-conflict 762 chr1 23266938 23266939 rs1832047 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TSC-CSHL, 4 A,C,G,T, 198.000000,4810.000000,4810.000000,198.000000, 0.019768,0.480232,0.480232,0.019768, maf-5-some-pop 762 chr1 23271431 23271432 rs614202 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1406.000000,3602.000000,3602.000000,1406.000000, 0.140375,0.359625,0.359625,0.140375, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23271503 23271504 rs2903995 0 - T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23278631 23278632 rs620514 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23281545 23281546 rs309506 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,KWOK,SC_JCM,WI_SSAHASNP, 2 A,T, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 762 chr1 23282059 23282060 rs600941 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_JCM,WI_SSAHASNP, 2 C,T, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop,maf-5-all-pops 762 chr1 23286751 23286752 rs751168 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2023.000000,2985.000000, 0.403954,0.596046, maf-5-some-pop,maf-5-all-pops 762 chr1 23288898 23288899 rs6426776 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1495.000000,3513.000000, 0.298522,0.701478, maf-5-some-pop,maf-5-all-pops 762 chr1 23291581 23291582 rs4655138 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2642.000000,2366.000000, 0.527556,0.472444, maf-5-some-pop,maf-5-all-pops 762 chr1 23294670 23294671 rs637168 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1300.000000,3708.000000, 0.259585,0.740415, maf-5-some-pop,maf-5-all-pops 762 chr1 23294838 23294839 rs648322 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops 762 chr1 23295928 23295929 rs309531 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,TISHKOFF, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop 762 chr1 23297509 23297510 rs309533 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop 762 chr1 23299905 23299906 rs6692586 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1685.000000,3323.000000, 0.336462,0.663538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 762 chr1 23308553 23308554 rs10429877 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1685.000000,3323.000000, 0.336462,0.663538, maf-5-some-pop,maf-5-all-pops 762 chr1 23312024 23312025 rs4655141 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1675.000000,3333.000000, 0.334465,0.665535, maf-5-some-pop,maf-5-all-pops 763 chr1 23338898 23338899 rs12135629 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2975.000000,2033.000000, 0.594050,0.405950, maf-5-some-pop,maf-5-all-pops 763 chr1 23338983 23338984 rs522802 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3640.000000,1368.000000,1368.000000,3640.000000, 0.363419,0.136581,0.136581,0.363419, maf-5-some-pop,maf-5-all-pops 763 chr1 23362687 23362688 rs669731 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,C, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop 763 chr1 23375692 23375693 rs5027299 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop,maf-5-all-pops,genotype-conflict 763 chr1 23376540 23376541 rs10917347 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 G,T, 1026.000000,3982.000000, 0.204872,0.795128, maf-5-some-pop 763 chr1 23386165 23386166 rs998894 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4715.000000,293.000000,293.000000,4715.000000, 0.470747,0.029253,0.029253,0.470747, maf-5-some-pop,maf-5-all-pops 763 chr1 23386319 23386320 rs12081529 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop 763 chr1 23401681 23401682 rs6426783 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 529.000000,4479.000000, 0.105631,0.894369, maf-5-some-pop 763 chr1 23409537 23409538 rs2235546 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,YUSUKE, 4 A,C,G,T, 1647.000000,3361.000000,3361.000000,1647.000000, 0.164437,0.335563,0.335563,0.164437, maf-5-some-pop 763 chr1 23414208 23414209 rs17278869 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 C,T, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop,genotype-conflict 763 chr1 23422691 23422692 rs614612 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1308.000000,3700.000000,3700.000000,1308.000000, 0.130591,0.369409,0.369409,0.130591, maf-5-some-pop,maf-5-all-pops 763 chr1 23432345 23432346 rs1208930 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2958.000000,2050.000000,2050.000000,2958.000000, 0.295327,0.204673,0.204673,0.295327, maf-5-some-pop,maf-5-all-pops 763 chr1 23435537 23435538 rs16827981 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 664.000000,4344.000000, 0.132588,0.867412, maf-5-some-pop 763 chr1 23445450 23445451 rs12408468 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 3978.000000,1030.000000, 0.794329,0.205671, maf-5-some-pop,maf-5-all-pops 763 chr1 23446271 23446272 rs16828001 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 763 chr1 23446610 23446611 rs7534311 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3019.000000,1989.000000, 0.602835,0.397165, maf-5-some-pop,maf-5-all-pops 763 chr1 23452741 23452742 rs11809418 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,CSHL-HAPMAP,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 763 chr1 23453238 23453239 rs16828013 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4989.000000,19.000000, 0.996206,0.003794, maf-5-some-pop 764 chr1 23463467 23463468 rs12038873 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23471764 23471765 rs9426690 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2002.000000,3006.000000, 0.399760,0.600240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23472340 23472341 rs3845521 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 897.000000,4111.000000, 0.179113,0.820887, maf-5-some-pop,maf-5-all-pops 764 chr1 23492781 23492782 rs2776822 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop 764 chr1 23501353 23501354 rs643492 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1708.000000,3300.000000, 0.341054,0.658946, maf-5-some-pop,maf-5-all-pops 764 chr1 23504794 23504795 rs2806561 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2230.000000,2778.000000, 0.445288,0.554712, maf-5-some-pop,maf-5-all-pops 764 chr1 23505893 23505894 rs1757042 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 962.000000,4046.000000,4046.000000,962.000000, 0.096046,0.403954,0.403954,0.096046, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23506624 23506625 rs2806563 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3148.000000,1860.000000, 0.628594,0.371406, maf-5-some-pop 764 chr1 23507171 23507172 rs2806566 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4047.000000,961.000000, 0.808107,0.191893, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23510583 23510584 rs2776815 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3291.000000,1717.000000,1717.000000,3291.000000, 0.328574,0.171426,0.171426,0.328574, maf-5-some-pop,maf-5-all-pops 764 chr1 23513046 23513047 rs6704440 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,C, 1030.000000,3978.000000, 0.205671,0.794329, maf-5-some-pop,maf-5-all-pops 764 chr1 23513979 23513980 rs641032 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3292.000000,1716.000000, 0.657348,0.342652, maf-5-some-pop,maf-5-all-pops 764 chr1 23521339 23521340 rs676643 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,AFFY,BGI,BL,CGM_KYOTO,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HG_BONN_CNS_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 937.000000,4071.000000, 0.187101,0.812899, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23527004 23527005 rs2806570 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1675.000000,3333.000000, 0.334465,0.665535, maf-5-some-pop,maf-5-all-pops 764 chr1 23537554 23537555 rs627304 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2672.000000,2336.000000, 0.533546,0.466454, maf-5-some-pop,maf-5-all-pops 764 chr1 23539009 23539010 rs10917360 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1689.000000,3319.000000, 0.337260,0.662740, maf-5-some-pop,maf-5-all-pops,microattr-tpa 764 chr1 23540124 23540125 rs16828047 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop,maf-5-all-pops 764 chr1 23540427 23540428 rs6694445 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2667.000000,2341.000000, 0.532548,0.467452, maf-5-some-pop,maf-5-all-pops 764 chr1 23540542 23540543 rs16828054 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 764 chr1 23541077 23541078 rs7519093 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1645.000000,3363.000000, 0.328474,0.671526, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23545786 23545787 rs10799793 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,maf-5-all-pops 764 chr1 23551358 23551359 rs4655151 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 1916.000000,3092.000000, 0.382588,0.617412, maf-5-some-pop,maf-5-all-pops 764 chr1 23554665 23554666 rs1122096 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23557416 23557417 rs12143690 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,T, 2273.000000,2735.000000, 0.453874,0.546126, maf-5-some-pop 764 chr1 23559999 23560000 rs4654837 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4127.000000,881.000000, 0.824081,0.175919, maf-5-some-pop,maf-5-all-pops 764 chr1 23571248 23571249 rs16828133 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop 764 chr1 23574050 23574051 rs9662343 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2639.000000,2369.000000, 0.526957,0.473043, maf-5-some-pop,maf-5-all-pops 764 chr1 23577072 23577073 rs1535180 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3478.000000,1530.000000,1530.000000,3478.000000, 0.347244,0.152756,0.152756,0.347244, maf-5-some-pop,maf-5-all-pops 764 chr1 23577665 23577666 rs2144732 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 633.000000,4375.000000,4375.000000,633.000000, 0.063199,0.436801,0.436801,0.063199, maf-5-some-pop 764 chr1 23582879 23582880 rs2749146 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3603.000000,1405.000000,1405.000000,3603.000000, 0.359724,0.140276,0.140276,0.359724, maf-5-some-pop,maf-5-all-pops,genotype-conflict 764 chr1 23590410 23590411 rs16828154 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 764 chr1 23590650 23590651 rs667311 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 733.000000,4275.000000,4275.000000,733.000000, 0.073183,0.426817,0.426817,0.073183, maf-5-some-pop,maf-5-all-pops 765 chr1 23604004 23604005 rs616406 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_JCM, 2 G,T, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop,maf-5-all-pops 765 chr1 23607502 23607503 rs656868 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 874.000000,4134.000000, 0.174521,0.825479, maf-5-some-pop 765 chr1 23607714 23607715 rs16828167 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop 765 chr1 23607902 23607903 rs658636 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop,maf-5-all-pops,genotype-conflict 765 chr1 23607959 23607960 rs12096254 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop,maf-5-all-pops 765 chr1 23612143 23612144 rs10917369 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 765 chr1 23616287 23616288 rs1198498 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3266.000000,1742.000000, 0.652157,0.347843, maf-5-some-pop,maf-5-all-pops 765 chr1 23619008 23619009 rs10753554 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2326.000000,2682.000000, 0.464457,0.535543, maf-5-some-pop,maf-5-all-pops,genotype-conflict 765 chr1 23622698 23622699 rs589939 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop,maf-5-all-pops 765 chr1 23628435 23628436 rs1047694 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SC_JCM,TISHKOFF, 4 A,C,G,T, 299.000000,4709.000000,4709.000000,299.000000, 0.029852,0.470148,0.470148,0.029852, maf-5-some-pop 765 chr1 23628639 23628640 rs1198489 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,TISHKOFF, 2 C,T, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 765 chr1 23631713 23631714 rs2849021 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 G,T, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,maf-5-all-pops 765 chr1 23633380 23633381 rs17489856 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 40.000000,4968.000000, 0.007987,0.992013, maf-5-some-pop 765 chr1 23639008 23639009 rs1535179 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL,YUSUKE, 2 A,G, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 765 chr1 23639548 23639549 rs3765941 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,YUSUKE, 4 A,C,G,T, 2316.000000,2692.000000,2692.000000,2316.000000, 0.231230,0.268770,0.268770,0.231230, maf-5-some-pop,maf-5-all-pops,genotype-conflict 765 chr1 23645454 23645455 rs16828286 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 765 chr1 23656704 23656705 rs648473 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF, 2 A,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop,maf-5-all-pops 765 chr1 23661121 23661122 rs12083279 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop 765 chr1 23679842 23679843 rs618036 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4310.000000,698.000000, 0.860623,0.139377, maf-5-some-pop 765 chr1 23684976 23684977 rs1198494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop,genotype-conflict 765 chr1 23685036 23685037 rs12097859 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 765 chr1 23685784 23685785 rs604742 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 403.000000,4605.000000, 0.080471,0.919529, maf-5-some-pop 765 chr1 23686797 23686798 rs601786 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 765 chr1 23687826 23687827 rs644749 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1373.000000,3635.000000, 0.274161,0.725839, maf-5-some-pop,maf-5-all-pops,genotype-conflict 765 chr1 23690672 23690673 rs12127143 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop 765 chr1 23691254 23691255 rs2849027 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM, 4 A,C,G,T, 59.000000,4949.000000,4949.000000,59.000000, 0.005891,0.494109,0.494109,0.005891, maf-5-some-pop 765 chr1 23694020 23694021 rs588641 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 426.000000,4582.000000,4582.000000,426.000000, 0.042532,0.457468,0.457468,0.042532, maf-5-some-pop 765 chr1 23703117 23703118 rs10753555 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 2490.000000,2518.000000, 0.497204,0.502796, maf-5-some-pop,maf-5-all-pops,genotype-conflict 765 chr1 23706652 23706653 rs6666439 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop 765 chr1 23707400 23707401 rs651542 0 - A A A/T genomic single unknown 0 0 near-gene-3 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 765 chr1 23708918 23708919 rs10737472 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2877.000000,2131.000000, 0.574481,0.425519, maf-5-some-pop,maf-5-all-pops 765 chr1 23708988 23708989 rs10917375 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,maf-5-all-pops 765 chr1 23709198 23709199 rs12076866 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop 765 chr1 23709868 23709869 rs687886 0 - T T A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1052.000000,3956.000000,3956.000000,1052.000000, 0.105032,0.394968,0.394968,0.105032, maf-5-some-pop 765 chr1 23710474 23710475 rs2298632 0 - C C A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,YUSUKE, 4 A,C,G,T, 1849.000000,3159.000000,3159.000000,1849.000000, 0.184605,0.315395,0.315395,0.184605, maf-5-some-pop 765 chr1 23711375 23711376 rs2092933 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4266.000000,742.000000,742.000000,4266.000000, 0.425919,0.074081,0.074081,0.425919, maf-5-some-pop,genotype-conflict 765 chr1 23712337 23712338 rs685895 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 765 chr1 23712527 23712528 rs649458 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops,genotype-conflict 765 chr1 23712624 23712625 rs12126283 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 548.000000,4460.000000, 0.109425,0.890575, maf-5-some-pop 765 chr1 23720184 23720185 rs4648892 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2735.000000,2273.000000, 0.546126,0.453874, maf-5-some-pop,maf-5-all-pops 765 chr1 23720259 23720260 rs2486078 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 766 chr1 23729224 23729225 rs1616772 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,G, 4459.000000,549.000000, 0.890375,0.109625, maf-5-some-pop 766 chr1 23730724 23730725 rs1787653 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4467.000000,541.000000,541.000000,4467.000000, 0.445986,0.054014,0.054014,0.445986, maf-5-some-pop 766 chr1 23731610 23731611 rs3017182 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4553.000000,455.000000,455.000000,4553.000000, 0.454573,0.045427,0.045427,0.454573, maf-5-some-pop,genotype-conflict 766 chr1 23734349 23734350 rs1767141 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 571.000000,4437.000000, 0.114018,0.885982, maf-5-some-pop 766 chr1 23742151 23742152 rs1787646 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 766 chr1 23743295 23743296 rs6682786 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop 766 chr1 23743580 23743581 rs2156087 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 2379.000000,2629.000000, 0.475040,0.524960, maf-5-some-pop,maf-5-all-pops 766 chr1 23743697 23743698 rs1767142 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop 766 chr1 23746624 23746625 rs716243 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4696.000000,312.000000,312.000000,4696.000000, 0.468850,0.031150,0.031150,0.468850, maf-5-some-pop 766 chr1 23747765 23747766 rs946268 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4348.000000,660.000000, 0.868211,0.131789, maf-5-some-pop,maf-5-all-pops 766 chr1 23748439 23748440 rs7515139 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop,genotype-conflict 766 chr1 23748783 23748784 rs11588134 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop 766 chr1 23749592 23749593 rs1198439 0 - A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 766 chr1 23755512 23755513 rs1198430 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop,maf-5-all-pops 766 chr1 23755715 23755716 rs1198431 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,maf-5-all-pops 766 chr1 23756154 23756155 rs1198432 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,maf-5-all-pops,genotype-conflict 766 chr1 23756694 23756695 rs1198433 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1798.000000,3210.000000, 0.359026,0.640974, maf-5-some-pop,genotype-conflict 766 chr1 23758133 23758134 rs1198434 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 646.000000,4362.000000, 0.128994,0.871006, maf-5-some-pop,maf-5-all-pops,genotype-conflict 766 chr1 23760407 23760408 rs1207124 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop,genotype-conflict 766 chr1 23765806 23765807 rs12132844 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop 766 chr1 23765927 23765928 rs16828494 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop 766 chr1 23766232 23766233 rs1077514 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3196.000000,1812.000000,1812.000000,3196.000000, 0.319089,0.180911,0.180911,0.319089, maf-5-some-pop,maf-5-all-pops,microattr-tpa 766 chr1 23767486 23767487 rs17184553 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop 766 chr1 23776393 23776394 rs16828528 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4960.000000,48.000000, 0.990415,0.009585, maf-5-some-pop 766 chr1 23786202 23786203 rs1555024 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2736.000000,2272.000000, 0.546326,0.453674, maf-5-some-pop,maf-5-all-pops 766 chr1 23789566 23789567 rs7523811 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 766 chr1 23789697 23789698 rs7546989 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop,maf-5-all-pops 766 chr1 23791736 23791737 rs12132473 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 983.000000,4025.000000, 0.196286,0.803714, maf-5-some-pop 766 chr1 23792897 23792898 rs41521247 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop 766 chr1 23794781 23794782 rs7554117 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 2267.000000,2741.000000, 0.452676,0.547324, maf-5-some-pop,maf-5-all-pops,genotype-conflict 766 chr1 23802536 23802537 rs2742957 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop,genotype-conflict 766 chr1 23807577 23807578 rs10799796 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4898.000000,110.000000, 0.978035,0.021965, 766 chr1 23823797 23823798 rs1009590 0 - G G C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 5.000000,5003.000000,5003.000000,5.000000, 0.000499,0.499501,0.499501,0.000499, maf-5-some-pop 766 chr1 23828903 23828904 rs1119439 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops 766 chr1 23834485 23834486 rs3820028 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,YUSUKE, 4 A,C,G,T, 1765.000000,3243.000000,3243.000000,1765.000000, 0.176218,0.323782,0.323782,0.176218, maf-5-some-pop 766 chr1 23837559 23837560 rs3218203 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 766 chr1 23838054 23838055 rs2811971 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop 766 chr1 23841545 23841546 rs3218190 0 - G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EGP_SNPS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 766 chr1 23845287 23845288 rs3218177 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 720.000000,4288.000000,4288.000000,720.000000, 0.071885,0.428115,0.428115,0.071885, maf-5-some-pop 766 chr1 23845962 23845963 rs3218173 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 4 A,C,G,T, 4249.000000,759.000000,759.000000,4249.000000, 0.424221,0.075779,0.075779,0.424221, maf-5-some-pop 766 chr1 23848041 23848042 rs2038027 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1893.000000,3115.000000, 0.377995,0.622005, maf-5-some-pop 767 chr1 23887879 23887880 rs4649097 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2480.000000,2528.000000, 0.495208,0.504792, maf-5-some-pop,maf-5-all-pops 767 chr1 23890780 23890781 rs909536 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1637.000000,3371.000000, 0.326877,0.673123, maf-5-some-pop 767 chr1 23907660 23907661 rs12239465 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 767 chr1 23907701 23907702 rs4649099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1559.000000,3449.000000, 0.311302,0.688698, maf-5-some-pop,maf-5-all-pops 767 chr1 23912166 23912167 rs4514282 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,genotype-conflict 767 chr1 23914062 23914063 rs2811948 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4962.000000,46.000000, 0.990815,0.009185, maf-5-some-pop 767 chr1 23915059 23915060 rs2683061 0 - A A C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1131.000000,219.000000, 0.837778,0.162222, maf-5-some-pop 767 chr1 23915596 23915597 rs2813874 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4314.000000,694.000000,694.000000,4314.000000, 0.430711,0.069289,0.069289,0.430711, maf-5-some-pop 767 chr1 23924220 23924221 rs16828599 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop 767 chr1 23926255 23926256 rs2864889 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2639.000000,2369.000000,2369.000000,2639.000000, 0.263478,0.236522,0.236522,0.263478, maf-5-some-pop 767 chr1 23927928 23927929 rs4649100 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1548.000000,3460.000000, 0.309105,0.690895, maf-5-some-pop,maf-5-all-pops 767 chr1 23928398 23928399 rs12405372 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1458.000000,3550.000000, 0.291134,0.708866, maf-5-some-pop,maf-5-all-pops 767 chr1 23928762 23928763 rs16828611 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop 767 chr1 23929468 23929469 rs10799798 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1122.000000,1864.000000, 0.375754,0.624246, maf-5-some-pop,maf-5-all-pops,genotype-conflict 767 chr1 23937038 23937039 rs2811989 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1816.000000,3192.000000,3192.000000,1816.000000, 0.181310,0.318690,0.318690,0.181310, maf-5-some-pop 767 chr1 23939011 23939012 rs2811985 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3199.000000,1809.000000,1809.000000,3199.000000, 0.319389,0.180611,0.180611,0.319389, maf-5-some-pop 767 chr1 23941051 23941052 rs7534452 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 767 chr1 23942801 23942802 rs6677615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1813.000000,3195.000000, 0.362021,0.637979, maf-5-some-pop,maf-5-all-pops 767 chr1 23945442 23945443 rs2864884 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2527.000000,2481.000000,2481.000000,2527.000000, 0.252296,0.247704,0.247704,0.252296, maf-5-some-pop,maf-5-all-pops 767 chr1 23945582 23945583 rs1316855 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,KRIBB_YJKIM,TSC-CSHL, 2 A,G, 50.000000,4958.000000, 0.009984,0.990016, 767 chr1 23950146 23950147 rs2811981 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4598.000000,410.000000,410.000000,4598.000000, 0.459065,0.040935,0.040935,0.459065, maf-5-some-pop 767 chr1 23958920 23958921 rs2683063 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 628.000000,4380.000000,4380.000000,628.000000, 0.062700,0.437300,0.437300,0.062700, maf-5-some-pop 767 chr1 23968742 23968743 rs4648910 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 767 chr1 23970649 23970650 rs4649104 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2540.000000,2468.000000, 0.507188,0.492812, maf-5-some-pop,maf-5-all-pops 767 chr1 23980451 23980452 rs12084240 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3663.000000,1345.000000, 0.731430,0.268570, maf-5-some-pop 767 chr1 23985308 23985309 rs6684096 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1792.000000,3216.000000, 0.357827,0.642173, maf-5-some-pop,maf-5-all-pops 768 chr1 23996452 23996453 rs6703825 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3310.000000,1698.000000, 0.660942,0.339058, maf-5-some-pop,maf-5-all-pops,genotype-conflict 768 chr1 23997194 23997195 rs1579047 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop,maf-5-all-pops 768 chr1 23998608 23998609 rs7517283 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1074.000000,3934.000000, 0.214457,0.785543, maf-5-some-pop 768 chr1 24003425 24003426 rs4316398 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1840.000000,3168.000000, 0.367412,0.632588, maf-5-some-pop,maf-5-all-pops 768 chr1 24004098 24004099 rs2864705 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3541.000000,1467.000000,1467.000000,3541.000000, 0.353534,0.146466,0.146466,0.353534, maf-5-some-pop 768 chr1 24004201 24004202 rs2864704 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1466.000000,3542.000000,3542.000000,1466.000000, 0.146366,0.353634,0.353634,0.146366, maf-5-some-pop,maf-5-all-pops 768 chr1 24004512 24004513 rs10799801 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3582.000000,1426.000000, 0.715256,0.284744, maf-5-some-pop 768 chr1 24009543 24009544 rs10799802 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1499.000000,3509.000000, 0.299321,0.700679, maf-5-some-pop,maf-5-all-pops,genotype-conflict 768 chr1 24020033 24020034 rs6682672 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,KRIBB_YJKIM,TISHKOFF, 2 G,T, 4962.000000,46.000000, 0.990815,0.009185, maf-5-some-pop 768 chr1 24053464 24053465 rs571479 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2908.000000,2100.000000, 0.580671,0.419329, maf-5-some-pop,maf-5-all-pops,genotype-conflict 768 chr1 24055717 24055718 rs586173 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3451.000000,1557.000000,1557.000000,3451.000000, 0.344549,0.155451,0.155451,0.344549, maf-5-some-pop,maf-5-all-pops 768 chr1 24062986 24062987 rs10917420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2508.000000,2500.000000, 0.500799,0.499201, maf-5-some-pop,maf-5-all-pops,genotype-conflict 768 chr1 24072354 24072355 rs550850 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop 768 chr1 24078939 24078940 rs550252 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP, 2 C,T, 4964.000000,44.000000, 0.991214,0.008786, 768 chr1 24083493 24083494 rs2076345 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 25 1000GENOMES,ABI,AFFY,APPLERA_GI,BL,CGAP-GAI,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop,maf-5-all-pops 768 chr1 24083648 24083649 rs2076346 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CGM_KYOTO,ENSEMBL,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1467.000000,3541.000000, 0.292931,0.707069, maf-5-some-pop,genotype-conflict 768 chr1 24100222 24100223 rs7514394 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2199.000000,2809.000000, 0.439097,0.560903, maf-5-some-pop,maf-5-all-pops 768 chr1 24114128 24114129 rs4237 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 32 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,UWGC,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3368.000000,1640.000000,1640.000000,3368.000000, 0.336262,0.163738,0.163738,0.336262, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia 769 chr1 24132304 24132305 rs2256179 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 2928.000000,2080.000000, 0.584665,0.415335, maf-5-some-pop,maf-5-all-pops 769 chr1 24148987 24148988 rs16828744 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4981.000000,27.000000, 0.994609,0.005391, maf-5-some-pop,genotype-conflict 769 chr1 24175762 24175763 rs12404321 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop 769 chr1 24181040 24181041 rs665 0 - C C A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,WIAF, 4 A,C,G,T, 5.000000,5003.000000,5003.000000,5.000000, 0.000499,0.499501,0.499501,0.000499, 769 chr1 24182347 24182348 rs11803575 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3976.000000,1032.000000, 0.793930,0.206070, maf-5-some-pop,maf-5-all-pops 769 chr1 24196400 24196401 rs3123554 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1737.000000,3271.000000, 0.346845,0.653155, maf-5-some-pop,maf-5-all-pops 769 chr1 24196956 24196957 rs2503002 0 - C C C/G genomic single unknown 0 0 near-gene-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 769 chr1 24216180 24216181 rs2501392 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop,maf-5-all-pops 769 chr1 24221833 24221834 rs9424398 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3927.000000,1081.000000, 0.784145,0.215855, maf-5-some-pop,maf-5-all-pops 769 chr1 24228593 24228594 rs6669546 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop 769 chr1 24234368 24234369 rs6671665 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop 769 chr1 24237630 24237631 rs3123558 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 472.000000,4536.000000, 0.094249,0.905751, maf-5-some-pop 769 chr1 24239077 24239078 rs2501415 0 + T T G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop 770 chr1 24289056 24289057 rs1043880 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 14 AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,LEE,SEQUENOM,SSMP, 2 C,G, 816.000000,1174.000000, 0.410050,0.589950, maf-5-some-pop,maf-5-all-pops 770 chr1 24300848 24300849 rs6667686 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,GMI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 526.000000,1450.000000, 0.266194,0.733806, maf-5-some-pop,microattr-tpa 770 chr1 24342410 24342411 rs2506085 0 - C C G/T genomic single unknown 0 0 unknown exact 1 14 ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_JCM,SSMP, 2 G,T, 205.000000,217.000000, 0.485782,0.514218, maf-5-some-pop,maf-5-all-pops 770 chr1 24378025 24378026 rs7537874 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2957.000000,2051.000000, 0.590455,0.409545, maf-5-some-pop,maf-5-all-pops 771 chr1 24382233 24382234 rs4649166 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1495.000000,3513.000000, 0.298522,0.701478, maf-5-some-pop 771 chr1 24382483 24382484 rs6424148 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3488.000000,1520.000000, 0.696486,0.303514, maf-5-some-pop 771 chr1 24385329 24385330 rs6693386 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 771 chr1 24386376 24386377 rs4649167 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 771 chr1 24388370 24388371 rs4649168 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 771 chr1 24390376 24390377 rs12404800 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24391180 24391181 rs11249085 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop,genotype-conflict 771 chr1 24391741 24391742 rs16829059 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3902.000000,1106.000000, 0.779153,0.220847, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24391965 24391966 rs4575029 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop,maf-5-all-pops 771 chr1 24393281 24393282 rs10903077 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 1355.000000,3653.000000, 0.270567,0.729433, maf-5-some-pop 771 chr1 24393562 24393563 rs16829071 0 + C C C/T genomic single unknown 0 0 missense exact 1 18 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop,maf-5-all-pops 771 chr1 24397635 24397636 rs16829083 0 + A A A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,AFFY,APPLERA_GI,COMPLETE_GENOMICS,EXOME_CHIP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 771 chr1 24401198 24401199 rs11249102 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24404987 24404988 rs12719820 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24405072 24405073 rs12562826 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3174.000000,1834.000000, 0.633786,0.366214, maf-5-some-pop,maf-5-all-pops 771 chr1 24405165 24405166 rs12562385 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops 771 chr1 24405338 24405339 rs4308923 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2930.000000,2078.000000, 0.585064,0.414936, maf-5-some-pop,maf-5-all-pops 771 chr1 24406646 24406647 rs4649175 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 29 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1774.000000,3234.000000, 0.354233,0.645767, maf-5-some-pop,maf-5-all-pops 771 chr1 24408413 24408414 rs4313343 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3173.000000,1835.000000, 0.633586,0.366414, maf-5-some-pop,maf-5-all-pops 771 chr1 24409164 24409165 rs4320728 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,ABI,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop,maf-5-all-pops 771 chr1 24415046 24415047 rs4378147 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3569.000000,1439.000000, 0.712660,0.287340, maf-5-some-pop 771 chr1 24417867 24417868 rs4487973 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24421803 24421804 rs11249142 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 3866.000000,1142.000000, 0.771965,0.228035, maf-5-some-pop 771 chr1 24422625 24422626 rs12568789 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,genotype-conflict 771 chr1 24444540 24444541 rs12092673 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop,genotype-conflict 771 chr1 24447115 24447116 rs3795302 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2438.000000,2570.000000,2570.000000,2438.000000, 0.243411,0.256589,0.256589,0.243411, maf-5-some-pop 771 chr1 24450204 24450205 rs12071691 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 771 chr1 24450932 24450933 rs7355010 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 771 chr1 24452398 24452399 rs11249201 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 611.000000,4397.000000, 0.122005,0.877995, maf-5-some-pop 771 chr1 24452762 24452763 rs11578307 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop,maf-5-all-pops 771 chr1 24453077 24453078 rs11577442 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3218.000000,1790.000000, 0.642572,0.357428, maf-5-some-pop,maf-5-all-pops 771 chr1 24454687 24454688 rs16829204 0 + C C C/T genomic single unknown 0 0 missense exact 1 18 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4244.000000,764.000000, 0.847444,0.152556, maf-5-some-pop 771 chr1 24464704 24464705 rs2502450 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2186.000000,2822.000000, 0.436502,0.563498, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24466258 24466259 rs10751768 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2359.000000,2649.000000, 0.471046,0.528954, maf-5-some-pop,maf-5-all-pops,genotype-conflict 771 chr1 24470923 24470924 rs12746876 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 771 chr1 24471199 24471200 rs4448470 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3278.000000,1730.000000, 0.654553,0.345447, maf-5-some-pop 771 chr1 24474766 24474767 rs10736936 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop,genotype-conflict 771 chr1 24475176 24475177 rs4648940 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 874.000000,4134.000000, 0.174521,0.825479, maf-5-some-pop 771 chr1 24475251 24475252 rs4649190 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 771 chr1 24476369 24476370 rs4330872 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 707.000000,4301.000000, 0.141174,0.858826, maf-5-some-pop,microattr-tpa,genotype-conflict 771 chr1 24482473 24482474 rs11249006 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,maf-5-all-pops 771 chr1 24482747 24482748 rs2153334 0 - T T A/C genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 100.000000,4908.000000,4908.000000,100.000000, 0.009984,0.490016,0.490016,0.009984, maf-5-some-pop 771 chr1 24487401 24487402 rs12565101 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1999.000000,3009.000000, 0.399161,0.600839, maf-5-some-pop,maf-5-all-pops 771 chr1 24496661 24496662 rs11249017 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2188.000000,2820.000000, 0.436901,0.563099, maf-5-some-pop,maf-5-all-pops 771 chr1 24496999 24497000 rs12128905 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,maf-5-all-pops 771 chr1 24506048 24506049 rs3893319 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4422.000000,586.000000, 0.882987,0.117013, maf-5-some-pop 771 chr1 24506860 24506861 rs3897440 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 771 chr1 24507854 24507855 rs10903046 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2008.000000,3000.000000, 0.400958,0.599042, maf-5-some-pop,maf-5-all-pops 771 chr1 24509073 24509074 rs10903047 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1644.000000,3364.000000, 0.328275,0.671725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 772 chr1 24510931 24510932 rs7532146 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop,genotype-conflict 772 chr1 24512054 24512055 rs4489498 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 771.000000,4237.000000, 0.153954,0.846046, maf-5-some-pop,maf-5-all-pops 772 chr1 24518205 24518206 rs10794648 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3274.000000,1734.000000, 0.653754,0.346246, maf-5-some-pop,maf-5-all-pops 772 chr1 24518642 24518643 rs7552167 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 738.000000,4270.000000, 0.147364,0.852636, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 772 chr1 24525995 24525996 rs870549 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2685.000000,2323.000000, 0.536142,0.463858, maf-5-some-pop 772 chr1 24527094 24527095 rs11249024 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1369.000000,3639.000000, 0.273363,0.726637, maf-5-some-pop 772 chr1 24527815 24527816 rs16860735 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 772 chr1 24530963 24530964 rs11249028 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 772 chr1 24531153 24531154 rs4466594 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1914.000000,3094.000000, 0.382188,0.617812, maf-5-some-pop,maf-5-all-pops 772 chr1 24531633 24531634 rs946662 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3246.000000,1762.000000, 0.648163,0.351837, maf-5-some-pop,maf-5-all-pops 772 chr1 24532143 24532144 rs16860738 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1284.000000,3724.000000, 0.256390,0.743610, maf-5-some-pop,maf-5-all-pops 772 chr1 24536669 24536670 rs12067029 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop 772 chr1 24540227 24540228 rs11249034 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 772 chr1 24541154 24541155 rs10751770 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4415.000000,593.000000, 0.881589,0.118411, maf-5-some-pop 772 chr1 24541242 24541243 rs11249035 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop 772 chr1 24546197 24546198 rs11582184 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops 772 chr1 24552834 24552835 rs11249039 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops 772 chr1 24552880 24552881 rs11585428 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 772 chr1 24557759 24557760 rs11249045 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop 772 chr1 24558059 24558060 rs4648850 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1587.000000,3421.000000, 0.316893,0.683107, maf-5-some-pop,maf-5-all-pops 772 chr1 24564126 24564127 rs11249047 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops 772 chr1 24564642 24564643 rs10903063 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3563.000000,1445.000000, 0.711462,0.288538, maf-5-some-pop 772 chr1 24568089 24568090 rs4648955 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop,genotype-conflict 772 chr1 24568803 24568804 rs12135904 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3016.000000,1992.000000, 0.602236,0.397764, maf-5-some-pop 772 chr1 24572079 24572080 rs7516592 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 772 chr1 24574992 24574993 rs11586494 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 784.000000,4224.000000, 0.156550,0.843450, maf-5-some-pop 772 chr1 24577505 24577506 rs12081094 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop,maf-5-all-pops 772 chr1 24578010 24578011 rs12407356 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SSMP, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop 772 chr1 24580992 24580993 rs12045815 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops,genotype-conflict 772 chr1 24581276 24581277 rs11249056 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 772 chr1 24581337 24581338 rs12086860 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 772 chr1 24581415 24581416 rs4233034 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop 772 chr1 24581492 24581493 rs11249057 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2321.000000,2687.000000, 0.463458,0.536542, maf-5-some-pop,maf-5-all-pops,genotype-conflict 772 chr1 24582161 24582162 rs12088212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,maf-5-all-pops 772 chr1 24582303 24582304 rs12144166 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 772 chr1 24583451 24583452 rs11249058 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3021.000000,1987.000000, 0.603235,0.396765, maf-5-some-pop,maf-5-all-pops 772 chr1 24590690 24590691 rs6424169 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 672.000000,4336.000000, 0.134185,0.865815, maf-5-some-pop,maf-5-all-pops 772 chr1 24593907 24593908 rs4564081 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1722.000000,3286.000000, 0.343850,0.656150, maf-5-some-pop 772 chr1 24601572 24601573 rs10430148 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 584.000000,4424.000000, 0.116613,0.883387, maf-5-some-pop 772 chr1 24602625 24602626 rs12065087 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP, 3 A,C,G, 218.000000,4749.000000,41.000000, 0.043530,0.948283,0.008187, maf-5-some-pop 772 chr1 24602794 24602795 rs4233036 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 772 chr1 24603517 24603518 rs4648959 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1608.000000,305.000000, 0.840565,0.159435, maf-5-some-pop 772 chr1 24606558 24606559 rs4648858 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop 772 chr1 24606791 24606792 rs7525692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2612.000000,2396.000000, 0.521565,0.478435, maf-5-some-pop,maf-5-all-pops,genotype-conflict 772 chr1 24607418 24607419 rs7535789 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 772 chr1 24609752 24609753 rs12403824 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,G, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops,genotype-conflict 772 chr1 24610583 24610584 rs12121909 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2020.000000,2988.000000, 0.403355,0.596645, maf-5-some-pop,maf-5-all-pops,genotype-conflict 772 chr1 24610940 24610941 rs12070291 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4711.000000,297.000000, 0.940695,0.059305, maf-5-some-pop 772 chr1 24612341 24612342 rs4492558 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop,maf-5-all-pops 772 chr1 24614898 24614899 rs6682923 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop 772 chr1 24616293 24616294 rs1572786 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2175.000000,2833.000000, 0.434305,0.565695, maf-5-some-pop 772 chr1 24617922 24617923 rs11249070 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1922.000000,3086.000000, 0.383786,0.616214, maf-5-some-pop,maf-5-all-pops 772 chr1 24617988 24617989 rs12563854 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1916.000000,3092.000000, 0.382588,0.617412, maf-5-some-pop,maf-5-all-pops 772 chr1 24620800 24620801 rs12405071 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1901.000000,3107.000000, 0.379593,0.620407, maf-5-some-pop,maf-5-all-pops 772 chr1 24621300 24621301 rs11249073 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 1755.000000,3253.000000, 0.350439,0.649561, maf-5-some-pop,maf-5-all-pops 772 chr1 24630445 24630446 rs11807804 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 772 chr1 24630464 24630465 rs7514013 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2665.000000,2343.000000, 0.532149,0.467851, maf-5-some-pop,maf-5-all-pops 772 chr1 24632289 24632290 rs11249081 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2338.000000,2670.000000, 0.466853,0.533147, maf-5-some-pop,maf-5-all-pops 772 chr1 24634426 24634427 rs942542 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 66.000000,4942.000000,4942.000000,66.000000, 0.006589,0.493411,0.493411,0.006589, maf-5-some-pop 772 chr1 24635314 24635315 rs16829432 0 + G G C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 3 C,G,T, 410.000000,4580.000000,18.000000, 0.081869,0.914537,0.003594, maf-5-some-pop 772 chr1 24636199 24636200 rs1099285 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1762.000000,3246.000000,3246.000000,1762.000000, 0.175919,0.324081,0.324081,0.175919, maf-5-some-pop,maf-5-all-pops 772 chr1 24636806 24636807 rs672138 0 - T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 772 chr1 24636834 24636835 rs672511 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 404.000000,4604.000000,4604.000000,404.000000, 0.040335,0.459665,0.459665,0.040335, maf-5-some-pop 772 chr1 24640455 24640456 rs622345 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1342.000000,3666.000000,3666.000000,1342.000000, 0.133986,0.366014,0.366014,0.133986, maf-5-some-pop 772 chr1 24641334 24641335 rs635539 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 A,G, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop,maf-5-all-pops 773 chr1 24641964 24641965 rs2251344 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 390.000000,4618.000000,4618.000000,390.000000, 0.038938,0.461062,0.461062,0.038938, maf-5-some-pop,genotype-conflict 773 chr1 24651860 24651861 rs12561866 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop 773 chr1 24658062 24658063 rs2486668 0 - C C C/G genomic single unknown 0 0 missense exact 1 20 1000GENOMES,ABI,AFFY,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 773 chr1 24659046 24659047 rs16829445 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 38.000000,4970.000000, 0.007588,0.992412, maf-5-some-pop 773 chr1 24659434 24659435 rs10903078 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1311.000000,3697.000000, 0.261781,0.738219, maf-5-some-pop 773 chr1 24666933 24666934 rs12401714 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 773 chr1 24667422 24667423 rs12568609 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 754.000000,4254.000000, 0.150559,0.849441, maf-5-some-pop,maf-5-all-pops 773 chr1 24669793 24669794 rs3887581 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3677.000000,1331.000000,1331.000000,3677.000000, 0.367113,0.132887,0.132887,0.367113, maf-5-some-pop,maf-5-all-pops 773 chr1 24669807 24669808 rs3887580 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SI_EXO,SSMP,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1240.000000,3768.000000,3768.000000,1240.000000, 0.123802,0.376198,0.376198,0.123802, maf-5-some-pop 773 chr1 24670263 24670264 rs4648975 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3653.000000,1355.000000, 0.729433,0.270567, maf-5-some-pop,maf-5-all-pops,genotype-conflict 773 chr1 24673865 24673866 rs6691722 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2117.000000,2891.000000, 0.422724,0.577276, maf-5-some-pop,maf-5-all-pops 773 chr1 24675460 24675461 rs11591176 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 G,T, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,genotype-conflict 773 chr1 24684115 24684116 rs7527465 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 745.000000,4263.000000, 0.148762,0.851238, maf-5-some-pop 773 chr1 24686545 24686546 rs6424094 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop 773 chr1 24690079 24690080 rs486575 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2327.000000,2681.000000, 0.464657,0.535343, maf-5-some-pop,maf-5-all-pops 773 chr1 24695150 24695151 rs7537875 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1833.000000,3175.000000, 0.366014,0.633986, maf-5-some-pop,maf-5-all-pops,genotype-conflict 773 chr1 24699177 24699178 rs34648406 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 773 chr1 24704262 24704263 rs12135404 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2094.000000,2914.000000, 0.418131,0.581869, maf-5-some-pop,maf-5-all-pops 773 chr1 24706291 24706292 rs1142057 0 - T T A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 31 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SEQUENOM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3177.000000,1831.000000,1831.000000,3177.000000, 0.317192,0.182808,0.182808,0.317192, maf-5-some-pop,maf-5-all-pops 773 chr1 24707732 24707733 rs11249096 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop,genotype-conflict 773 chr1 24707882 24707883 rs11249097 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2930.000000,2078.000000, 0.585064,0.414936, maf-5-some-pop,maf-5-all-pops 773 chr1 24711119 24711120 rs527567 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1689.000000,3319.000000, 0.337260,0.662740, maf-5-some-pop,maf-5-all-pops 773 chr1 24712582 24712583 rs11249098 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop 773 chr1 24712721 24712722 rs507908 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1583.000000,3425.000000, 0.316094,0.683906, maf-5-some-pop,maf-5-all-pops 773 chr1 24713522 24713523 rs41420648 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop 773 chr1 24713654 24713655 rs519782 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1169.000000,3839.000000, 0.233427,0.766573, maf-5-some-pop,maf-5-all-pops 773 chr1 24714395 24714396 rs10489439 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3447.000000,1561.000000, 0.688299,0.311701, maf-5-some-pop,maf-5-all-pops 773 chr1 24715827 24715828 rs11589294 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1924.000000,3084.000000, 0.384185,0.615815, maf-5-some-pop,maf-5-all-pops 773 chr1 24716888 24716889 rs520206 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,genotype-conflict 773 chr1 24738841 24738842 rs6696136 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop,maf-5-all-pops,genotype-conflict 773 chr1 24743602 24743603 rs6694932 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops,genotype-conflict 773 chr1 24743782 24743783 rs760967 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4089.000000,919.000000, 0.816494,0.183506, maf-5-some-pop 773 chr1 24743878 24743879 rs760968 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 4025.000000,983.000000, 0.803714,0.196286, maf-5-some-pop 773 chr1 24745614 24745615 rs1016209 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1975.000000,3033.000000, 0.394369,0.605631, maf-5-some-pop,maf-5-all-pops,genotype-conflict 773 chr1 24745703 24745704 rs760969 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 G,T, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop,genotype-conflict 773 chr1 24746204 24746205 rs12125143 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3470.000000,1538.000000, 0.692891,0.307109, maf-5-some-pop,maf-5-all-pops 773 chr1 24748309 24748310 rs6686862 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop,maf-5-all-pops,genotype-conflict 773 chr1 24748773 24748774 rs6687289 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop 773 chr1 24748828 24748829 rs2235550 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3610.000000,1398.000000, 0.720847,0.279153, maf-5-some-pop,maf-5-all-pops 773 chr1 24749078 24749079 rs10489442 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 773 chr1 24749376 24749377 rs12129892 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3396.000000,1612.000000, 0.678115,0.321885, maf-5-some-pop,maf-5-all-pops 773 chr1 24749705 24749706 rs10489443 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1419.000000,3589.000000, 0.283347,0.716653, maf-5-some-pop,maf-5-all-pops 773 chr1 24755437 24755438 rs10903087 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2116.000000,2892.000000, 0.422524,0.577476, maf-5-some-pop 773 chr1 24756473 24756474 rs2360785 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2095.000000,2913.000000, 0.418331,0.581669, maf-5-some-pop,maf-5-all-pops 773 chr1 24764753 24764754 rs7542174 0 + G G A/G genomic single unknown 0 0 intron exact 1 MixedObserved 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1632.000000,3376.000000, 0.325879,0.674121, maf-5-some-pop,maf-5-all-pops 773 chr1 24764914 24764915 rs7534396 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3518.000000,1490.000000, 0.702476,0.297524, maf-5-some-pop,maf-5-all-pops 773 chr1 24771929 24771930 rs41406445 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,HGSV,ILLUMINA,TISHKOFF, 4 A,C,G,T, 69.000000,4939.000000,4939.000000,69.000000, 0.006889,0.493111,0.493111,0.006889, maf-5-some-pop 774 chr1 24773802 24773803 rs9424363 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop,maf-5-all-pops 774 chr1 24776796 24776797 rs6688479 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4634.000000,374.000000, 0.925319,0.074680, maf-5-some-pop,genotype-conflict 774 chr1 24784034 24784035 rs7518379 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop 774 chr1 24784138 24784139 rs10903089 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3187.000000,1821.000000, 0.636382,0.363618, maf-5-some-pop,maf-5-all-pops 774 chr1 24785392 24785393 rs2272935 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 24 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3474.000000,1534.000000, 0.693690,0.306310, maf-5-some-pop,maf-5-all-pops,genotype-conflict 774 chr1 24785825 24785826 rs16829686 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 774 chr1 24788949 24788950 rs6688953 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop 774 chr1 24795093 24795094 rs6691538 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop,maf-5-all-pops 774 chr1 24810068 24810069 rs195700 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2277.000000,2731.000000, 0.454673,0.545327, maf-5-some-pop,maf-5-all-pops 774 chr1 24813154 24813155 rs195704 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1151.000000,3857.000000, 0.229832,0.770168, maf-5-some-pop 774 chr1 24813421 24813422 rs195705 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1101.000000,3907.000000, 0.219848,0.780152, maf-5-some-pop 774 chr1 24822023 24822024 rs1929304 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4389.000000,619.000000,619.000000,4389.000000, 0.438199,0.061801,0.061801,0.438199, maf-5-some-pop,maf-5-all-pops 774 chr1 24822499 24822500 rs9424374 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2157.000000,2851.000000, 0.430711,0.569289, maf-5-some-pop,maf-5-all-pops 774 chr1 24827828 24827829 rs431454 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop 774 chr1 24833935 24833936 rs196398 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1927.000000,3081.000000, 0.384784,0.615216, maf-5-some-pop,maf-5-all-pops 774 chr1 24834000 24834001 rs196399 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,G,N, 883.000000,2160.000000,7.000000, 0.289508,0.708197,0.002295, maf-5-some-pop 774 chr1 24849239 24849240 rs9424380 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop 774 chr1 24849436 24849437 rs9424381 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop 774 chr1 24851899 24851900 rs196411 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3118.000000,1890.000000, 0.622604,0.377396, maf-5-some-pop,maf-5-all-pops 774 chr1 24855192 24855193 rs196416 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2495.000000,2513.000000, 0.498203,0.501797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 774 chr1 24861747 24861748 rs16829813 0 + C C A/C genomic single unknown 0 0 missense,untranslated-3 exact 1 12 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,TISHKOFF, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,genotype-conflict 774 chr1 24863284 24863285 rs11231 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop,maf-5-all-pops 774 chr1 24863529 24863530 rs10489444 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop,genotype-conflict 774 chr1 24864575 24864576 rs7540973 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 G,T, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 774 chr1 24865473 24865474 rs6682514 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 372.000000,4636.000000, 0.074281,0.925719, maf-5-some-pop,genotype-conflict 774 chr1 24871729 24871730 rs196426 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2313.000000,2695.000000, 0.461861,0.538139, maf-5-some-pop,maf-5-all-pops 774 chr1 24871992 24871993 rs196427 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1945.000000,3063.000000, 0.388379,0.611621, maf-5-some-pop,maf-5-all-pops 774 chr1 24875489 24875490 rs2809964 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3149.000000,1859.000000, 0.628794,0.371206, maf-5-some-pop,maf-5-all-pops 774 chr1 24877457 24877458 rs12065278 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop 774 chr1 24898452 24898453 rs6424106 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop,genotype-conflict 774 chr1 24901862 24901863 rs12138020 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2419.000000,2589.000000, 0.483027,0.516973, maf-5-some-pop,maf-5-all-pops 774 chr1 24901997 24901998 rs6687818 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 788.000000,4220.000000, 0.157348,0.842652, maf-5-some-pop 774 chr1 24902075 24902076 rs7527096 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 775 chr1 24904254 24904255 rs12129478 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3858.000000,1150.000000, 0.770367,0.229633, maf-5-some-pop,maf-5-all-pops 775 chr1 24907414 24907415 rs4073051 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3433.000000,1575.000000,1575.000000,3433.000000, 0.342752,0.157248,0.157248,0.342752, maf-5-some-pop,maf-5-all-pops 775 chr1 24910318 24910319 rs11249138 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2476.000000,2532.000000, 0.494409,0.505591, maf-5-some-pop,maf-5-all-pops 775 chr1 24917455 24917456 rs9328948 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop,genotype-conflict 775 chr1 24917542 24917543 rs9729036 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 A,G, 2574.000000,2434.000000, 0.513978,0.486022, maf-5-some-pop,maf-5-all-pops 775 chr1 24922055 24922056 rs12353957 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 893.000000,4115.000000, 0.178315,0.821685, maf-5-some-pop,maf-5-all-pops 775 chr1 24926989 24926990 rs11249139 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1847.000000,3161.000000, 0.368810,0.631190, maf-5-some-pop,maf-5-all-pops 775 chr1 24927000 24927001 rs4425931 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop,maf-5-all-pops 775 chr1 24927560 24927561 rs4553122 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2764.000000,2244.000000, 0.551917,0.448083, maf-5-some-pop,maf-5-all-pops 775 chr1 24927624 24927625 rs4378146 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 974.000000,4034.000000, 0.194489,0.805511, maf-5-some-pop,maf-5-all-pops 775 chr1 24932732 24932733 rs11249141 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop,maf-5-all-pops 775 chr1 24936929 24936930 rs12062858 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,genotype-conflict 775 chr1 24937257 24937258 rs12062985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,genotype-conflict 775 chr1 24938155 24938156 rs4301588 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1972.000000,3036.000000, 0.393770,0.606230, maf-5-some-pop,maf-5-all-pops 775 chr1 24945654 24945655 rs4487976 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1371.000000,3637.000000, 0.273762,0.726238, maf-5-some-pop,maf-5-all-pops 775 chr1 24947185 24947186 rs10903097 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3593.000000,1415.000000, 0.717452,0.282548, maf-5-some-pop,maf-5-all-pops 775 chr1 24950916 24950917 rs12239628 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 775 chr1 24954965 24954966 rs2105184 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2327.000000,2681.000000, 0.464657,0.535343, maf-5-some-pop,maf-5-all-pops 775 chr1 24959271 24959272 rs9725784 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop 775 chr1 24959533 24959534 rs9725821 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop 775 chr1 24962220 24962221 rs12085979 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop,maf-5-all-pops 775 chr1 24967164 24967165 rs12072370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 48.000000,4960.000000, 0.009585,0.990415, maf-5-some-pop 775 chr1 24968289 24968290 rs9725269 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2104.000000,2904.000000, 0.420128,0.579872, maf-5-some-pop,maf-5-all-pops 775 chr1 25006449 25006450 rs7524610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 775 chr1 25013904 25013905 rs16829921 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop 775 chr1 25014808 25014809 rs12068506 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4232.000000,776.000000, 0.845048,0.154952, maf-5-some-pop,genotype-conflict 775 chr1 25015513 25015514 rs4649013 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2292.000000,2716.000000, 0.457668,0.542332, maf-5-some-pop,maf-5-all-pops 775 chr1 25015529 25015530 rs4649014 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1826.000000,3182.000000, 0.364617,0.635383, maf-5-some-pop,maf-5-all-pops,genotype-conflict 775 chr1 25021180 25021181 rs4233039 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1277.000000,3731.000000, 0.254992,0.745008, maf-5-some-pop,maf-5-all-pops 775 chr1 25021471 25021472 rs4274010 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3292.000000,1716.000000, 0.657348,0.342652, maf-5-some-pop,maf-5-all-pops 775 chr1 25022030 25022031 rs16829932 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 416.000000,4592.000000, 0.083067,0.916933, maf-5-some-pop 775 chr1 25022054 25022055 rs11249163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 613.000000,4395.000000, 0.122404,0.877596, maf-5-some-pop,maf-5-all-pops 775 chr1 25023043 25023044 rs11805783 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,TISHKOFF, 2 A,C, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop 776 chr1 25043779 25043780 rs3122037 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1702.000000,3306.000000, 0.339856,0.660144, maf-5-some-pop,maf-5-all-pops 776 chr1 25043880 25043881 rs3131511 0 - T T A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 776 chr1 25044110 25044111 rs4601530 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2995.000000,2013.000000, 0.598043,0.401957, maf-5-some-pop,maf-5-all-pops,microattr-tpa 776 chr1 25054222 25054223 rs7520844 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3119.000000,1889.000000, 0.622804,0.377196, maf-5-some-pop,maf-5-all-pops 776 chr1 25059427 25059428 rs3131505 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1284.000000,3724.000000,3724.000000,1284.000000, 0.128195,0.371805,0.371805,0.128195, maf-5-some-pop,maf-5-all-pops 776 chr1 25064000 25064001 rs1538416 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3723.000000,1285.000000,1285.000000,3723.000000, 0.371705,0.128295,0.128295,0.371705, maf-5-some-pop,genotype-conflict 776 chr1 25066447 25066448 rs3131502 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1935.000000,3073.000000,3073.000000,1935.000000, 0.193191,0.306809,0.306809,0.193191, maf-5-some-pop,maf-5-all-pops,genotype-conflict 776 chr1 25075367 25075368 rs3131500 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 130.000000,4878.000000,4878.000000,130.000000, 0.012979,0.487021,0.487021,0.012979, maf-5-some-pop 776 chr1 25075800 25075801 rs1890449 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2295.000000,2713.000000,2713.000000,2295.000000, 0.229133,0.270867,0.270867,0.229133, maf-5-some-pop,maf-5-all-pops 776 chr1 25076295 25076296 rs3131499 0 - A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 776 chr1 25090445 25090446 rs6604978 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 776 chr1 25099437 25099438 rs6604979 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2036.000000,2972.000000, 0.406550,0.593450, maf-5-some-pop,maf-5-all-pops 776 chr1 25105255 25105256 rs7553761 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 776 chr1 25111039 25111040 rs3122056 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 A,T, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop,genotype-conflict 776 chr1 25121934 25121935 rs12058768 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 776 chr1 25128122 25128123 rs10732912 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 133.000000,4875.000000, 0.026558,0.973442, maf-5-some-pop 776 chr1 25129857 25129858 rs7533367 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,genotype-conflict 776 chr1 25142096 25142097 rs4428828 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop 776 chr1 25144572 25144573 rs4233040 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop 777 chr1 25168123 25168124 rs9259 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 777 chr1 25169874 25169875 rs4649025 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop 777 chr1 25173036 25173037 rs7535819 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2584.000000,2424.000000, 0.515974,0.484026, maf-5-some-pop,maf-5-all-pops 777 chr1 25178309 25178310 rs7551842 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 777 chr1 25180511 25180512 rs7549156 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 493.000000,4515.000000, 0.098442,0.901558, maf-5-some-pop 777 chr1 25182421 25182422 rs12089485 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 130.000000,4878.000000, 0.025958,0.974042, maf-5-some-pop 777 chr1 25185196 25185197 rs4437822 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1867.000000,3141.000000, 0.372804,0.627196, maf-5-some-pop,maf-5-all-pops 777 chr1 25186068 25186069 rs6600275 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2058.000000,2950.000000, 0.410942,0.589058, maf-5-some-pop,maf-5-all-pops 777 chr1 25186694 25186695 rs11587431 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop,genotype-conflict 777 chr1 25186715 25186716 rs7523543 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3039.000000,1969.000000, 0.606829,0.393171, maf-5-some-pop,maf-5-all-pops 777 chr1 25193008 25193009 rs7513516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2107.000000,2901.000000, 0.420727,0.579273, maf-5-some-pop,maf-5-all-pops,genotype-conflict 777 chr1 25193154 25193155 rs3131513 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3554.000000,1454.000000, 0.709665,0.290335, maf-5-some-pop,maf-5-all-pops,microattr-tpa 777 chr1 25194298 25194299 rs2361150 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3171.000000,1837.000000, 0.633187,0.366813, maf-5-some-pop 777 chr1 25197154 25197155 rs4648881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2120.000000,2888.000000, 0.423323,0.576677, maf-5-some-pop,maf-5-all-pops 777 chr1 25197276 25197277 rs17360973 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 36.000000,4972.000000, 0.007188,0.992812, maf-5-some-pop,genotype-conflict 777 chr1 25199281 25199282 rs6686594 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1664.000000,3344.000000, 0.332268,0.667732, maf-5-some-pop,maf-5-all-pops 777 chr1 25199498 25199499 rs3131521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1600.000000,3408.000000, 0.319489,0.680511, maf-5-some-pop,maf-5-all-pops 777 chr1 25204752 25204753 rs3116863 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1346.000000,3662.000000, 0.268770,0.731230, maf-5-some-pop,maf-5-all-pops 777 chr1 25206403 25206404 rs2223365 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 1362.000000,3646.000000, 0.271965,0.728035, maf-5-some-pop,maf-5-all-pops,genotype-conflict 777 chr1 25207628 25207629 rs4649033 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3641.000000,1367.000000, 0.727037,0.272963, maf-5-some-pop,genotype-conflict 777 chr1 25213378 25213379 rs12027805 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop 777 chr1 25215749 25215750 rs10903113 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2567.000000,2441.000000, 0.512580,0.487420, maf-5-some-pop,maf-5-all-pops 777 chr1 25215988 25215989 rs11578143 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 874.000000,4134.000000, 0.174521,0.825479, maf-5-some-pop,genotype-conflict 777 chr1 25216030 25216031 rs7513064 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 777 chr1 25216045 25216046 rs7513066 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3570.000000,1438.000000, 0.712859,0.287141, maf-5-some-pop,maf-5-all-pops 777 chr1 25216151 25216152 rs11249196 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop,genotype-conflict 777 chr1 25216164 25216165 rs10458603 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 777 chr1 25218125 25218126 rs7519472 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3677.000000,1331.000000, 0.734225,0.265775, maf-5-some-pop,maf-5-all-pops 777 chr1 25220540 25220541 rs9438856 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1277.000000,3731.000000, 0.254992,0.745008, maf-5-some-pop,maf-5-all-pops 777 chr1 25222378 25222379 rs6663310 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2280.000000,2728.000000, 0.455272,0.544728, maf-5-some-pop,maf-5-all-pops,genotype-conflict 777 chr1 25224009 25224010 rs7553295 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2811.000000,2197.000000, 0.561302,0.438698, maf-5-some-pop 777 chr1 25224320 25224321 rs9438859 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1556.000000,3452.000000, 0.310703,0.689297, maf-5-some-pop,genotype-conflict 777 chr1 25226751 25226752 rs16830118 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 G,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop 777 chr1 25239288 25239289 rs16830141 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop 777 chr1 25261385 25261386 rs4648884 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2726.000000,2282.000000, 0.544329,0.455671, maf-5-some-pop,maf-5-all-pops 777 chr1 25261695 25261696 rs10903115 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2270.000000,2738.000000, 0.453275,0.546725, maf-5-some-pop,maf-5-all-pops 777 chr1 25261739 25261740 rs11249204 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2256.000000,2752.000000, 0.450479,0.549521, maf-5-some-pop,maf-5-all-pops 777 chr1 25267921 25267922 rs4649038 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1617.000000,688.000000, 0.701518,0.298482, maf-5-some-pop,genotype-conflict 777 chr1 25281014 25281015 rs4478762 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 800.000000,4208.000000, 0.159744,0.840256, maf-5-some-pop,genotype-conflict 777 chr1 25281042 25281043 rs1006265 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2127.000000,2881.000000,2881.000000,2127.000000, 0.212360,0.287640,0.287640,0.212360, maf-5-some-pop,maf-5-all-pops,genotype-conflict 777 chr1 25282855 25282856 rs1848186 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3907.000000,1101.000000,1101.000000,3907.000000, 0.390076,0.109924,0.109924,0.390076, maf-5-some-pop 777 chr1 25282992 25282993 rs4288539 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3907.000000,1101.000000, 0.780152,0.219848, maf-5-some-pop 777 chr1 25283355 25283356 rs11580845 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 1294.000000,3714.000000, 0.258387,0.741613, maf-5-some-pop,maf-5-all-pops 777 chr1 25283591 25283592 rs10903117 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3924.000000,1084.000000, 0.783546,0.216454, maf-5-some-pop 777 chr1 25286150 25286151 rs4648888 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1659.000000,3349.000000, 0.331270,0.668730, maf-5-some-pop,maf-5-all-pops,genotype-conflict 777 chr1 25293940 25293941 rs4648890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2984.000000,2024.000000, 0.595847,0.404153, maf-5-some-pop,maf-5-all-pops 777 chr1 25294344 25294345 rs7536848 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2296.000000,2712.000000, 0.458466,0.541534, maf-5-some-pop 777 chr1 25294877 25294878 rs10903118 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2705.000000,2303.000000, 0.540136,0.459864, maf-5-some-pop,maf-5-all-pops 777 chr1 25295579 25295580 rs7529070 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2963.000000,2045.000000, 0.591653,0.408347, maf-5-some-pop 778 chr1 25297183 25297184 rs11249215 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2408.000000,2600.000000, 0.480831,0.519169, maf-5-some-pop,maf-5-all-pops,microattr-tpa 778 chr1 25297282 25297283 rs11249217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4255.000000,753.000000, 0.849641,0.150359, maf-5-some-pop 778 chr1 25298407 25298408 rs11581762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 773.000000,4235.000000, 0.154353,0.845647, maf-5-some-pop,genotype-conflict 778 chr1 25299636 25299637 rs7550635 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1820.000000,3188.000000, 0.363419,0.636581, maf-5-some-pop,maf-5-all-pops 778 chr1 25300631 25300632 rs12036815 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1807.000000,3201.000000, 0.360823,0.639177, maf-5-some-pop,maf-5-all-pops 778 chr1 25304551 25304552 rs10794667 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2235.000000,2773.000000, 0.446286,0.553714, maf-5-some-pop,maf-5-all-pops 778 chr1 25309821 25309822 rs1702304 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2376.000000,2632.000000,2632.000000,2376.000000, 0.237220,0.262780,0.262780,0.237220, maf-5-some-pop,maf-5-all-pops 778 chr1 25310008 25310009 rs423539 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1627.000000,3381.000000, 0.324880,0.675120, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25310513 25310514 rs16830218 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop 778 chr1 25310681 25310682 rs16830221 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop 778 chr1 25312027 25312028 rs435833 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2755.000000,2253.000000, 0.550120,0.449880, maf-5-some-pop,maf-5-all-pops 778 chr1 25314117 25314118 rs11584631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,genotype-conflict 778 chr1 25316923 25316924 rs311432 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3911.000000,1097.000000, 0.780950,0.219050, maf-5-some-pop,maf-5-all-pops 778 chr1 25317227 25317228 rs311433 0 + C C C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 740.000000,4268.000000, 0.147764,0.852236, maf-5-some-pop 778 chr1 25320235 25320236 rs311438 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25320347 25320348 rs16830237 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,genotype-conflict 778 chr1 25322776 25322777 rs10794668 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1582.000000,3426.000000, 0.315895,0.684105, maf-5-some-pop,genotype-conflict 778 chr1 25322838 25322839 rs9438883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4261.000000,747.000000, 0.850839,0.149161, maf-5-some-pop,genotype-conflict 778 chr1 25326548 25326549 rs10903123 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3807.000000,1201.000000, 0.760184,0.239816, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25327405 25327406 rs407765 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop 778 chr1 25329751 25329752 rs11249231 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop,maf-5-all-pops 778 chr1 25329777 25329778 rs311466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop,maf-5-all-pops 778 chr1 25329990 25329991 rs387175 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4590.000000,418.000000, 0.916534,0.083466, maf-5-some-pop 778 chr1 25331584 25331585 rs11249232 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2616.000000,2392.000000, 0.522364,0.477636, maf-5-some-pop,maf-5-all-pops 778 chr1 25333263 25333264 rs12058910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop,maf-5-all-pops 778 chr1 25333415 25333416 rs12058996 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 883.000000,4125.000000, 0.176318,0.823682, maf-5-some-pop,maf-5-all-pops 778 chr1 25333898 25333899 rs755394 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2058.000000,2950.000000, 0.410942,0.589058, maf-5-some-pop,maf-5-all-pops 778 chr1 25337586 25337587 rs1555220 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1615.000000,3393.000000, 0.322484,0.677516, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25338798 25338799 rs10489161 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2236.000000,2772.000000, 0.446486,0.553514, maf-5-some-pop,maf-5-all-pops,microattr-tpa 778 chr1 25339219 25339220 rs10794669 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2237.000000,2771.000000, 0.446685,0.553315, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25340884 25340885 rs178134 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,SC_SNP, 2 C,G, 43.000000,4965.000000, 0.008586,0.991414, 778 chr1 25341749 25341750 rs11249240 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2257.000000,2751.000000, 0.450679,0.549321, maf-5-some-pop,maf-5-all-pops 778 chr1 25345009 25345010 rs11249242 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2295.000000,2713.000000, 0.458267,0.541733, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25353945 25353946 rs12027713 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 593.000000,4415.000000, 0.118411,0.881589, maf-5-some-pop,maf-5-all-pops 778 chr1 25354019 25354020 rs11249245 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4218.000000,790.000000, 0.842252,0.157748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25356718 25356719 rs311425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop 778 chr1 25358210 25358211 rs311426 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2931.000000,2077.000000, 0.585264,0.414736, maf-5-some-pop,maf-5-all-pops 778 chr1 25359372 25359373 rs11249247 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 8 1000GENOMES,AFFY,BCM-HGSC-SUB,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 3 A,C,T, 18.000000,4865.000000,125.000000, 0.003594,0.971446,0.024960, maf-5-some-pop 778 chr1 25359928 25359929 rs387240 0 - T T A/G genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1075.000000,3933.000000,3933.000000,1075.000000, 0.107328,0.392672,0.392672,0.107328, maf-5-some-pop,maf-5-all-pops 778 chr1 25363655 25363656 rs452044 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3422.000000,1586.000000,1586.000000,3422.000000, 0.341653,0.158347,0.158347,0.341653, maf-5-some-pop,maf-5-all-pops 778 chr1 25366181 25366182 rs380497 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 615.000000,4393.000000, 0.122804,0.877196, maf-5-some-pop 778 chr1 25366623 25366624 rs451171 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2038.000000,2970.000000, 0.406949,0.593051, maf-5-some-pop 778 chr1 25366986 25366987 rs404100 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2995.000000,2013.000000, 0.598043,0.401957, maf-5-some-pop,maf-5-all-pops 778 chr1 25369237 25369238 rs430022 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop,genotype-conflict 778 chr1 25370098 25370099 rs1739124 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 558.000000,4450.000000, 0.111422,0.888578, maf-5-some-pop,maf-5-all-pops 778 chr1 25372256 25372257 rs311441 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop,genotype-conflict 778 chr1 25375176 25375177 rs4649057 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops 778 chr1 25375582 25375583 rs11248971 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 778 chr1 25376547 25376548 rs10794641 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop 778 chr1 25377165 25377166 rs11248972 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1682.000000,3326.000000, 0.335863,0.664137, maf-5-some-pop,maf-5-all-pops 778 chr1 25377907 25377908 rs4082732 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop,genotype-conflict 778 chr1 25378357 25378358 rs11248973 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1704.000000,3304.000000, 0.340256,0.659744, maf-5-some-pop,maf-5-all-pops 778 chr1 25378443 25378444 rs369427 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2438.000000,2570.000000, 0.486821,0.513179, maf-5-some-pop,maf-5-all-pops 778 chr1 25378512 25378513 rs11248974 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop,maf-5-all-pops 778 chr1 25379394 25379395 rs10489162 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop 778 chr1 25379483 25379484 rs11581848 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4259.000000,749.000000, 0.850439,0.149561, maf-5-some-pop,maf-5-all-pops 778 chr1 25384436 25384437 rs10437112 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop 778 chr1 25391628 25391629 rs12031599 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4254.000000,754.000000, 0.849441,0.150559, maf-5-some-pop 778 chr1 25392126 25392127 rs11582016 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 601.000000,4407.000000, 0.120008,0.879992, maf-5-some-pop 778 chr1 25395132 25395133 rs448385 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2217.000000,2791.000000, 0.442692,0.557308, maf-5-some-pop,maf-5-all-pops 778 chr1 25395758 25395759 rs380149 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3517.000000,1491.000000, 0.702276,0.297724, maf-5-some-pop,genotype-conflict 778 chr1 25397966 25397967 rs4568778 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1924.000000,3084.000000, 0.384185,0.615815, maf-5-some-pop,maf-5-all-pops 778 chr1 25400811 25400812 rs16830335 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 548.000000,4460.000000, 0.109425,0.890575, maf-5-some-pop,genotype-conflict 778 chr1 25403782 25403783 rs443523 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3590.000000,1418.000000, 0.716853,0.283147, maf-5-some-pop,genotype-conflict 778 chr1 25404108 25404109 rs12040971 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 3867.000000,1141.000000, 0.772165,0.227835, maf-5-some-pop 778 chr1 25405808 25405809 rs7514299 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,T, 760.000000,4248.000000, 0.151757,0.848243, maf-5-some-pop 778 chr1 25407853 25407854 rs10493026 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop,microattr-tpa 778 chr1 25408432 25408433 rs178135 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2680.000000,2328.000000,2328.000000,2680.000000, 0.267572,0.232428,0.232428,0.267572, maf-5-some-pop,maf-5-all-pops 778 chr1 25408464 25408465 rs311482 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2336.000000,2672.000000,2672.000000,2336.000000, 0.233227,0.266773,0.266773,0.233227, maf-5-some-pop,maf-5-all-pops 778 chr1 25408518 25408519 rs311481 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2657.000000,2351.000000,2351.000000,2657.000000, 0.265276,0.234724,0.234724,0.265276, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25408684 25408685 rs12081177 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop 778 chr1 25408927 25408928 rs311480 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 2325.000000,2683.000000, 0.464257,0.535743, maf-5-some-pop,maf-5-all-pops,genotype-conflict 778 chr1 25411939 25411940 rs16830361 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 778 chr1 25413465 25413466 rs7533661 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1147.000000,3861.000000, 0.229034,0.770966, maf-5-some-pop,maf-5-all-pops 778 chr1 25415681 25415682 rs311473 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 506.000000,4502.000000,4502.000000,506.000000, 0.050519,0.449481,0.449481,0.050519, maf-5-some-pop 778 chr1 25424888 25424889 rs803314 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop 779 chr1 25430217 25430218 rs803323 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 779 chr1 25431724 25431725 rs4649065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop 779 chr1 25434241 25434242 rs803313 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3815.000000,1193.000000, 0.761781,0.238219, maf-5-some-pop 779 chr1 25435561 25435562 rs12093629 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 779 chr1 25441015 25441016 rs2753306 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,genotype-conflict 779 chr1 25441723 25441724 rs2660352 0 - A A C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4689.000000,319.000000,319.000000,4689.000000, 0.468151,0.031849,0.031849,0.468151, maf-5-some-pop 779 chr1 25443360 25443361 rs2753310 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 779 chr1 25444813 25444814 rs2753311 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 779 chr1 25444859 25444860 rs2753312 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop 779 chr1 25445019 25445020 rs2753313 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop 779 chr1 25445509 25445510 rs2753314 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop,genotype-conflict 779 chr1 25447388 25447389 rs7514417 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop 779 chr1 25447421 25447422 rs2255979 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4784.000000,224.000000,224.000000,4784.000000, 0.477636,0.022364,0.022364,0.477636, maf-5-some-pop,genotype-conflict 779 chr1 25449409 25449410 rs4560984 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1222.000000,3786.000000, 0.244010,0.755990, maf-5-some-pop,maf-5-all-pops 779 chr1 25452436 25452437 rs11248985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2532.000000,2476.000000, 0.505591,0.494409, maf-5-some-pop,maf-5-all-pops 779 chr1 25455524 25455525 rs803301 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop 779 chr1 25455534 25455535 rs803302 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SSMP,TISHKOFF, 2 A,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop 779 chr1 25456033 25456034 rs11802471 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,TISHKOFF, 2 C,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 779 chr1 25458698 25458699 rs803306 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 779 chr1 25459431 25459432 rs2753320 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops,genotype-conflict 779 chr1 25462078 25462079 rs11804893 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3488.000000,1520.000000, 0.696486,0.303514, maf-5-some-pop,maf-5-all-pops 779 chr1 25463635 25463636 rs12736320 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop,maf-5-all-pops 779 chr1 25463850 25463851 rs12744222 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4094.000000,914.000000, 0.817492,0.182508, maf-5-some-pop 779 chr1 25464819 25464820 rs12122408 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2492.000000,2516.000000, 0.497604,0.502396, maf-5-some-pop 779 chr1 25465980 25465981 rs12735622 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4042.000000,966.000000, 0.807109,0.192891, maf-5-some-pop,maf-5-all-pops 779 chr1 25473289 25473290 rs2143163 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 779 chr1 25475417 25475418 rs4649067 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4406.000000,602.000000, 0.879792,0.120208, maf-5-some-pop 779 chr1 25479735 25479736 rs2050069 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 779 chr1 25486202 25486203 rs926461 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3936.000000,1072.000000, 0.785942,0.214058, maf-5-some-pop 779 chr1 25488412 25488413 rs6681610 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1072.000000,3936.000000, 0.214058,0.785942, maf-5-some-pop 779 chr1 25488740 25488741 rs9438893 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1072.000000,3936.000000, 0.214058,0.785942, maf-5-some-pop 779 chr1 25490199 25490200 rs1883463 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop 779 chr1 25497791 25497792 rs10158481 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 1886.000000,3122.000000, 0.376597,0.623403, maf-5-some-pop,maf-5-all-pops 779 chr1 25515193 25515194 rs4649077 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 779 chr1 25519133 25519134 rs7551191 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop 779 chr1 25521089 25521090 rs12736858 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4258.000000,750.000000, 0.850240,0.149760, maf-5-some-pop,maf-5-all-pops 779 chr1 25523287 25523288 rs16830471 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 779 chr1 25529037 25529038 rs2375278 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop,genotype-conflict 779 chr1 25549736 25549737 rs1045554 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,CGAP-GAI,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,TISHKOFF, 4 A,C,G,T, 4560.000000,448.000000,448.000000,4560.000000, 0.455272,0.044728,0.044728,0.455272, maf-5-some-pop,genotype-conflict 779 chr1 25558559 25558560 rs9328945 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop 780 chr1 25562086 25562087 rs11249010 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 780 chr1 25570640 25570641 rs12096700 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop 780 chr1 25570829 25570830 rs11547 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SEQUENOM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 780 chr1 25628072 25628073 rs1053359 0 + G G C/G genomic single unknown 0 0 intron,missense exact 1 8 1000GENOMES,AFFY,EXOME_CHIP,KRIBB_YJKIM,LEE,NHLBI-ESP,SEQUENOM,TISHKOFF, 2 C,G, 360.000000,4648.000000, 0.071885,0.928115, maf-5-some-pop 780 chr1 25628087 25628088 rs1053360 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 5 1000GENOMES,AFFY,LEE,NHLBI-ESP,SEQUENOM, 2 A,G, 1.000000,5007.000000, 0.000200,0.999800, maf-5-some-pop 780 chr1 25688275 25688276 rs9689 0 + A A A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PGA-UW-FHCRC,PJP,SEQUENOM,SSMP,TISHKOFF, 2 A,G, 2709.000000,2299.000000, 0.540935,0.459065, maf-5-some-pop,maf-5-all-pops 781 chr1 25717307 25717308 rs1053361 0 - G G C/G genomic single unknown 0 0 intron,missense exact 1 12 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 781 chr1 25717364 25717365 rs609320 0 + C C C/G genomic single unknown 0 0 intron,missense exact 1 25 1000GENOMES,ABI,AFFY,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 4288.000000,720.000000, 0.856230,0.143770, clinically-assoc,maf-5-some-pop,has-omim-omia,submitted-by-lsdb,genotype-conflict 781 chr1 25719510 25719511 rs666686 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2022.000000,2986.000000, 0.403754,0.596246, maf-5-some-pop,maf-5-all-pops 781 chr1 25719598 25719599 rs686631 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops 781 chr1 25753637 25753638 rs926438 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2504.000000,2504.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 781 chr1 25758654 25758655 rs873308 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1684.000000,3324.000000,3324.000000,1684.000000, 0.168131,0.331869,0.331869,0.168131, maf-5-some-pop,maf-5-all-pops 781 chr1 25760919 25760920 rs11802413 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2571.000000,2437.000000, 0.513379,0.486621, maf-5-some-pop,maf-5-all-pops 781 chr1 25768936 25768937 rs10903129 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2572.000000,2436.000000, 0.513578,0.486422, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 782 chr1 25889421 25889422 rs12096438 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2839.000000,2169.000000, 0.566893,0.433107, maf-5-some-pop,maf-5-all-pops 782 chr1 25891453 25891454 rs3922724 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 782 chr1 25892879 25892880 rs3924486 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2936.000000,2072.000000, 0.586262,0.413738, maf-5-some-pop,genotype-conflict 782 chr1 25894852 25894853 rs11563 0 - G G A/C genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2860.000000,2148.000000,2148.000000,2860.000000, 0.285543,0.214457,0.214457,0.285543, maf-5-some-pop,maf-5-all-pops 782 chr1 25899164 25899165 rs11806326 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop,maf-5-all-pops 782 chr1 25900239 25900240 rs4659357 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 725.000000,4283.000000, 0.144768,0.855232, maf-5-some-pop,maf-5-all-pops,genotype-conflict 782 chr1 25907086 25907087 rs4075441 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops,genotype-conflict 782 chr1 25910532 25910533 rs4573505 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 A,T, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop 782 chr1 25910623 25910624 rs12088274 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 936.000000,4072.000000, 0.186901,0.813099, maf-5-some-pop 782 chr1 25914100 25914101 rs7514835 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 782 chr1 25914218 25914219 rs7546822 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop,genotype-conflict 782 chr1 25917241 25917242 rs7524617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop 782 chr1 25932185 25932186 rs4488019 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,T, 4494.000000,514.000000, 0.897364,0.102636, maf-5-some-pop 782 chr1 25936249 25936250 rs12075373 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop,maf-5-all-pops 782 chr1 25939573 25939574 rs12068771 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4228.000000,780.000000, 0.844249,0.155751, maf-5-some-pop,maf-5-all-pops 782 chr1 25940019 25940020 rs11247855 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4293.000000,715.000000, 0.857228,0.142772, maf-5-some-pop,genotype-conflict 782 chr1 25946758 25946759 rs3767923 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3800.000000,1208.000000,1208.000000,3800.000000, 0.379393,0.120607,0.120607,0.379393, maf-5-some-pop 782 chr1 25946798 25946799 rs3767922 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3805.000000,1203.000000,1203.000000,3805.000000, 0.379892,0.120108,0.120108,0.379892, maf-5-some-pop 783 chr1 25964744 25964745 rs11247912 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,C, 4222.000000,786.000000, 0.843051,0.156949, maf-5-some-pop,maf-5-all-pops 783 chr1 25965177 25965178 rs2982304 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2609.000000,2399.000000, 0.520966,0.479034, maf-5-some-pop,maf-5-all-pops 783 chr1 25967510 25967511 rs3767911 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 746.000000,4262.000000,4262.000000,746.000000, 0.074481,0.425519,0.425519,0.074481, maf-5-some-pop,maf-5-all-pops 783 chr1 25967561 25967562 rs3767910 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3862.000000,1146.000000,1146.000000,3862.000000, 0.385583,0.114417,0.114417,0.385583, maf-5-some-pop,genotype-conflict 783 chr1 25975428 25975429 rs3754158 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 783 chr1 25978926 25978927 rs3014717 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1312.000000,3696.000000,3696.000000,1312.000000, 0.130990,0.369010,0.369010,0.130990, maf-5-some-pop,maf-5-all-pops 783 chr1 25979174 25979175 rs12401509 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 745.000000,4263.000000, 0.148762,0.851238, maf-5-some-pop 783 chr1 25980130 25980131 rs3014715 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1309.000000,3699.000000,3699.000000,1309.000000, 0.130691,0.369309,0.369309,0.130691, maf-5-some-pop,maf-5-all-pops 783 chr1 25984263 25984264 rs876765 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop 783 chr1 25986521 25986522 rs2982309 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 783 chr1 25995935 25995936 rs10218563 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3612.000000,1396.000000, 0.721246,0.278754, maf-5-some-pop 783 chr1 25997141 25997142 rs17162850 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop,maf-5-all-pops 783 chr1 25997867 25997868 rs11802540 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 941.000000,4067.000000, 0.187899,0.812101, maf-5-some-pop,maf-5-all-pops,genotype-conflict 783 chr1 25999516 25999517 rs2982313 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2766.000000,2242.000000, 0.552316,0.447684, maf-5-some-pop,genotype-conflict 783 chr1 26005359 26005360 rs7533178 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 783 chr1 26013251 26013252 rs2744778 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop 783 chr1 26014023 26014024 rs2786864 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4660.000000,348.000000, 0.930511,0.069489, maf-5-some-pop 783 chr1 26015804 26015805 rs2786866 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1403.000000,3605.000000, 0.280152,0.719848, maf-5-some-pop,maf-5-all-pops 783 chr1 26015836 26015837 rs2786867 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3606.000000,1402.000000, 0.720048,0.279952, maf-5-some-pop,maf-5-all-pops 783 chr1 26020783 26020784 rs2744780 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1467.000000,3541.000000, 0.292931,0.707069, maf-5-some-pop 783 chr1 26030612 26030613 rs2744784 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 783 chr1 26030960 26030961 rs742357 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4800.000000,208.000000,208.000000,4800.000000, 0.479233,0.020767,0.020767,0.479233, maf-5-some-pop 783 chr1 26031013 26031014 rs1971442 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF,TSC-CSHL, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 783 chr1 26031878 26031879 rs2993235 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,genotype-conflict 783 chr1 26032033 26032034 rs2744785 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3542.000000,1466.000000, 0.707268,0.292732, maf-5-some-pop,maf-5-all-pops,genotype-conflict 783 chr1 26040138 26040139 rs2982292 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3738.000000,1270.000000, 0.746406,0.253594, maf-5-some-pop,maf-5-all-pops,genotype-conflict 783 chr1 26051522 26051523 rs2065970 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3644.000000,1364.000000, 0.727636,0.272364, maf-5-some-pop,maf-5-all-pops 783 chr1 26053711 26053712 rs3014697 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 239.000000,4769.000000,4769.000000,239.000000, 0.023862,0.476138,0.476138,0.023862, maf-5-some-pop 783 chr1 26053996 26053997 rs1267223 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4482.000000,526.000000, 0.894968,0.105032, maf-5-some-pop 783 chr1 26062655 26062656 rs2744772 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop,maf-5-all-pops 783 chr1 26063899 26063900 rs2982298 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,genotype-conflict 783 chr1 26064158 26064159 rs2993238 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,genotype-conflict 783 chr1 26066053 26066054 rs3014705 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4578.000000,430.000000,430.000000,4578.000000, 0.457069,0.042931,0.042931,0.457069, maf-5-some-pop 783 chr1 26069414 26069415 rs3767880 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 895.000000,4113.000000,4113.000000,895.000000, 0.089357,0.410643,0.410643,0.089357, maf-5-some-pop,maf-5-all-pops 783 chr1 26069506 26069507 rs807267 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4548.000000,460.000000,460.000000,4548.000000, 0.454073,0.045927,0.045927,0.454073, maf-5-some-pop,genotype-conflict 783 chr1 26073442 26073443 rs2786876 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 4465.000000,543.000000, 0.891573,0.108427, maf-5-some-pop 783 chr1 26081050 26081051 rs807262 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3154.000000,1854.000000,1854.000000,3154.000000, 0.314896,0.185104,0.185104,0.314896, maf-5-some-pop,maf-5-all-pops 784 chr1 26087668 26087669 rs17163225 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 304.000000,4704.000000, 0.060703,0.939297, maf-5-some-pop 784 chr1 26087743 26087744 rs4659378 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops,genotype-conflict 784 chr1 26091836 26091837 rs1415757 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 638.000000,4370.000000,4370.000000,638.000000, 0.063698,0.436302,0.436302,0.063698, maf-5-some-pop 784 chr1 26092247 26092248 rs3820515 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2193.000000,2815.000000,2815.000000,2193.000000, 0.218950,0.281050,0.281050,0.218950, maf-5-some-pop,maf-5-all-pops 784 chr1 26101162 26101163 rs760600 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 784 chr1 26106231 26106232 rs760599 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3311.000000,1697.000000,1697.000000,3311.000000, 0.330571,0.169429,0.169429,0.330571, maf-5-some-pop,genotype-conflict 784 chr1 26106768 26106769 rs12043011 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 862.000000,4146.000000, 0.172125,0.827875, maf-5-some-pop 784 chr1 26108744 26108745 rs11811043 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop 784 chr1 26116671 26116672 rs7349170 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop 784 chr1 26116979 26116980 rs710830 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3971.000000,1037.000000,1037.000000,3971.000000, 0.396466,0.103534,0.103534,0.396466, maf-5-some-pop 784 chr1 26118148 26118149 rs807250 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 133.000000,4875.000000,4875.000000,133.000000, 0.013279,0.486721,0.486721,0.013279, maf-5-some-pop 784 chr1 26118298 26118299 rs6694897 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1796.000000,3212.000000, 0.358626,0.641374, maf-5-some-pop,maf-5-all-pops 784 chr1 26129437 26129438 rs7549097 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1822.000000,3186.000000, 0.363818,0.636182, maf-5-some-pop,maf-5-all-pops 784 chr1 26132791 26132792 rs6675287 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 594.000000,4414.000000, 0.118610,0.881390, maf-5-some-pop 784 chr1 26134925 26134926 rs4659382 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop,genotype-conflict 784 chr1 26137024 26137025 rs11247740 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 784 chr1 26141178 26141179 rs10794511 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3983.000000,1025.000000, 0.795327,0.204673, maf-5-some-pop 784 chr1 26144544 26144545 rs1044183 0 + A A A/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 11 1000GENOMES,AFFY,CGAP-GAI,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SI_EXO, 2 A,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop 784 chr1 26167842 26167843 rs213632 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSMP,TISHKOFF, 2 A,G, 3792.000000,1216.000000, 0.757188,0.242812, maf-5-some-pop 784 chr1 26171472 26171473 rs17163310 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop 784 chr1 26171549 26171550 rs213628 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 817.000000,4191.000000, 0.163139,0.836861, maf-5-some-pop,genotype-conflict 784 chr1 26173551 26173552 rs17163320 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,C, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop 784 chr1 26175368 26175369 rs2565033 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4191.000000,817.000000, 0.836861,0.163139, maf-5-some-pop,genotype-conflict 784 chr1 26175517 26175518 rs2745538 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3991.000000,1017.000000,1017.000000,3991.000000, 0.398462,0.101538,0.101538,0.398462, maf-5-some-pop 784 chr1 26175845 26175846 rs2745537 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 817.000000,4191.000000,4191.000000,817.000000, 0.081569,0.418431,0.418431,0.081569, maf-5-some-pop 784 chr1 26176727 26176728 rs11247815 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 784 chr1 26187974 26187975 rs12067275 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 784 chr1 26197062 26197063 rs807067 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop,maf-5-all-pops,genotype-conflict 784 chr1 26197841 26197842 rs11247821 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop,genotype-conflict 784 chr1 26198269 26198270 rs11247822 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 784 chr1 26207243 26207244 rs213621 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop,maf-5-all-pops 784 chr1 26210163 26210164 rs11247824 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1855.000000,3153.000000, 0.370407,0.629593, maf-5-some-pop,maf-5-all-pops 785 chr1 26214602 26214603 rs159524 0 - G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 785 chr1 26215315 26215316 rs159523 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2659.000000,2349.000000,2349.000000,2659.000000, 0.265475,0.234525,0.234525,0.265475, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26216080 26216081 rs960747 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4846.000000,162.000000,162.000000,4846.000000, 0.483826,0.016174,0.016174,0.483826, maf-5-some-pop 785 chr1 26224632 26224633 rs12037513 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3219.000000,1789.000000, 0.642772,0.357228, maf-5-some-pop,maf-5-all-pops 785 chr1 26234982 26234983 rs182455 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1810.000000,3198.000000,3198.000000,1810.000000, 0.180711,0.319289,0.319289,0.180711, maf-5-some-pop,maf-5-all-pops 785 chr1 26239116 26239117 rs159532 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2312.000000,2696.000000, 0.461661,0.538339, maf-5-some-pop,maf-5-all-pops 785 chr1 26239277 26239278 rs159533 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2947.000000,2061.000000, 0.588458,0.411542, maf-5-some-pop,maf-5-all-pops 785 chr1 26242881 26242882 rs807061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 785 chr1 26246213 26246214 rs10902706 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop 785 chr1 26255146 26255147 rs10157690 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop 785 chr1 26255214 26255215 rs298439 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 1392.000000,3616.000000,3616.000000,1392.000000, 0.138978,0.361022,0.361022,0.138978, maf-5-some-pop,maf-5-all-pops 785 chr1 26255730 26255731 rs298438 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3680.000000,1328.000000,1328.000000,3680.000000, 0.367412,0.132588,0.132588,0.367412, maf-5-some-pop,maf-5-all-pops 785 chr1 26258543 26258544 rs298435 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3929.000000,1079.000000,1079.000000,3929.000000, 0.392272,0.107728,0.107728,0.392272, maf-5-some-pop,maf-5-all-pops 785 chr1 26266696 26266697 rs10902707 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1671.000000,3337.000000, 0.333666,0.666334, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26267259 26267260 rs2782820 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop,genotype-conflict 785 chr1 26270087 26270088 rs11247832 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3317.000000,1691.000000, 0.662340,0.337660, maf-5-some-pop,maf-5-all-pops 785 chr1 26275547 26275548 rs2992068 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4005.000000,1003.000000,1003.000000,4005.000000, 0.399860,0.100140,0.100140,0.399860, maf-5-some-pop 785 chr1 26278252 26278253 rs2992064 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 728.000000,4280.000000,4280.000000,728.000000, 0.072684,0.427316,0.427316,0.072684, maf-5-some-pop 785 chr1 26281560 26281561 rs298454 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1006.000000,4002.000000, 0.200879,0.799121, maf-5-some-pop,maf-5-all-pops 785 chr1 26283833 26283834 rs2914971 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 785 chr1 26283960 26283961 rs298456 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4056.000000,952.000000, 0.809904,0.190096, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26284116 26284117 rs298457 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 870.000000,4138.000000, 0.173722,0.826278, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26284280 26284281 rs12074251 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop 785 chr1 26286562 26286563 rs41334746 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 4 A,C,G,T, 159.000000,4849.000000,4849.000000,159.000000, 0.015875,0.484125,0.484125,0.015875, maf-5-some-pop,maf-5-all-pops 785 chr1 26286839 26286840 rs2782814 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1120.000000,3888.000000, 0.223642,0.776358, maf-5-some-pop,maf-5-all-pops 785 chr1 26290479 26290480 rs298450 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 770.000000,4238.000000, 0.153754,0.846246, maf-5-some-pop 785 chr1 26295769 26295770 rs11247834 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2730.000000,2278.000000, 0.545128,0.454872, maf-5-some-pop,maf-5-all-pops 785 chr1 26300319 26300320 rs298441 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 971.000000,4037.000000, 0.193890,0.806110, maf-5-some-pop 785 chr1 26304998 26304999 rs298443 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3861.000000,1147.000000,1147.000000,3861.000000, 0.385483,0.114517,0.114517,0.385483, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26305224 26305225 rs4659400 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2738.000000,2270.000000, 0.546725,0.453275, maf-5-some-pop,maf-5-all-pops 785 chr1 26306700 26306701 rs298447 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4420.000000,588.000000,588.000000,4420.000000, 0.441294,0.058706,0.058706,0.441294, maf-5-some-pop,maf-5-all-pops 785 chr1 26309192 26309193 rs1469512 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2260.000000,2748.000000,2748.000000,2260.000000, 0.225639,0.274361,0.274361,0.225639, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26311407 26311408 rs10902716 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops 785 chr1 26318831 26318832 rs7355094 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,C, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,genotype-conflict 785 chr1 26322080 26322081 rs1932067 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TSC-CSHL, 4 A,C,G,T, 4833.000000,175.000000,175.000000,4833.000000, 0.482528,0.017472,0.017472,0.482528, maf-5-some-pop 785 chr1 26327670 26327671 rs11247842 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2631.000000,2377.000000, 0.525359,0.474641, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26327824 26327825 rs4659401 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2637.000000,2371.000000, 0.526558,0.473442, maf-5-some-pop,maf-5-all-pops,genotype-conflict 785 chr1 26343111 26343112 rs2997457 0 - T T A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 712.000000,4296.000000,4296.000000,712.000000, 0.071086,0.428914,0.428914,0.071086, maf-5-some-pop 786 chr1 26348048 26348049 rs4659362 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 831.000000,4177.000000, 0.165935,0.834065, maf-5-some-pop,genotype-conflict 786 chr1 26351381 26351382 rs17163470 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop 786 chr1 26363600 26363601 rs4659403 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 786 chr1 26365373 26365374 rs4659404 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2961.000000,2047.000000, 0.591254,0.408746, maf-5-some-pop,maf-5-all-pops 786 chr1 26365548 26365549 rs2997452 0 - C C A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3508.000000,1500.000000,1500.000000,3508.000000, 0.350240,0.149760,0.149760,0.350240, maf-5-some-pop,maf-5-all-pops 786 chr1 26370266 26370267 rs11247851 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 786 chr1 26375576 26375577 rs3008218 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop 786 chr1 26382577 26382578 rs2997448 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 161.000000,4847.000000,4847.000000,161.000000, 0.016074,0.483926,0.483926,0.016074, maf-5-some-pop,genotype-conflict 786 chr1 26383124 26383125 rs11247852 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop,maf-5-all-pops 786 chr1 26383168 26383169 rs12096733 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop 786 chr1 26384689 26384690 rs1317709 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3867.000000,1141.000000,1141.000000,3867.000000, 0.386082,0.113918,0.113918,0.386082, maf-5-some-pop,maf-5-all-pops,genotype-conflict 786 chr1 26385149 26385150 rs2275949 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 786 chr1 26385305 26385306 rs3008222 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 G,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,genotype-conflict 786 chr1 26386296 26386297 rs1892496 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1759.000000,3249.000000,3249.000000,1759.000000, 0.175619,0.324381,0.324381,0.175619, maf-5-some-pop,maf-5-all-pops 786 chr1 26386394 26386395 rs11811759 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 24.000000,4984.000000, 0.004792,0.995208, maf-5-some-pop 786 chr1 26391139 26391140 rs2997444 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 113.000000,4895.000000,4895.000000,113.000000, 0.011282,0.488718,0.488718,0.011282, maf-5-some-pop,genotype-conflict 786 chr1 26391258 26391259 rs12089458 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 786 chr1 26399229 26399230 rs11247854 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3053.000000,1955.000000, 0.609625,0.390375, maf-5-some-pop,maf-5-all-pops 786 chr1 26399476 26399477 rs12097547 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 786 chr1 26402022 26402023 rs3008231 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3925.000000,1083.000000, 0.783746,0.216254, maf-5-some-pop,maf-5-all-pops,genotype-conflict 786 chr1 26402819 26402820 rs3008419 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3922.000000,1086.000000,1086.000000,3922.000000, 0.391573,0.108427,0.108427,0.391573, maf-5-some-pop,maf-5-all-pops,genotype-conflict 786 chr1 26411917 26411918 rs12069719 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4097.000000,911.000000, 0.818091,0.181909, maf-5-some-pop 786 chr1 26418764 26418765 rs2783617 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4903.000000,105.000000,105.000000,4903.000000, 0.489517,0.010483,0.010483,0.489517, maf-5-some-pop,genotype-conflict 786 chr1 26419041 26419042 rs2802351 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 568.000000,4440.000000,4440.000000,568.000000, 0.056709,0.443291,0.443291,0.056709, maf-5-some-pop 786 chr1 26420599 26420600 rs2802350 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 587.000000,4421.000000,4421.000000,587.000000, 0.058606,0.441394,0.441394,0.058606, maf-5-some-pop 786 chr1 26429436 26429437 rs2783639 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 970.000000,4038.000000, 0.193690,0.806310, maf-5-some-pop 786 chr1 26429673 26429674 rs2802311 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,genotype-conflict 786 chr1 26441206 26441207 rs2783681 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,genotype-conflict 786 chr1 26447738 26447739 rs1981135 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop,genotype-conflict 786 chr1 26447816 26447817 rs17163582 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,genotype-conflict 786 chr1 26448848 26448849 rs17356867 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 587.000000,4421.000000, 0.117212,0.882788, maf-5-some-pop 786 chr1 26452385 26452386 rs17257127 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop,genotype-conflict 786 chr1 26470059 26470060 rs2802332 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop 786 chr1 26471742 26471743 rs1335759 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2930.000000,2078.000000,2078.000000,2930.000000, 0.292532,0.207468,0.207468,0.292532, maf-5-some-pop,maf-5-all-pops,genotype-conflict 786 chr1 26474438 26474439 rs4281320 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,C, 4572.000000,436.000000, 0.912939,0.087061, maf-5-some-pop,genotype-conflict 786 chr1 26475520 26475521 rs868551 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3749.000000,1259.000000, 0.748602,0.251398, maf-5-some-pop,maf-5-all-pops 787 chr1 26501043 26501044 rs2783626 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2326.000000,2682.000000, 0.464457,0.535543, maf-5-some-pop,maf-5-all-pops 787 chr1 26504755 26504756 rs2783631 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2682.000000,2326.000000, 0.535543,0.464457, maf-5-some-pop,maf-5-all-pops 787 chr1 26508292 26508293 rs3819033 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 1432.000000,3576.000000,3576.000000,1432.000000, 0.142971,0.357029,0.357029,0.142971, maf-5-some-pop 787 chr1 26519963 26519964 rs11247868 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1682.000000,3326.000000, 0.335863,0.664137, maf-5-some-pop,maf-5-all-pops 787 chr1 26522517 26522518 rs12732022 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1040.000000,3968.000000, 0.207668,0.792332, maf-5-some-pop 787 chr1 26524705 26524706 rs9970046 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1640.000000,3368.000000, 0.327476,0.672524, maf-5-some-pop,maf-5-all-pops 787 chr1 26525382 26525383 rs17163666 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 774.000000,4234.000000, 0.154553,0.845447, maf-5-some-pop 787 chr1 26526216 26526217 rs6660744 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4051.000000,957.000000, 0.808906,0.191094, maf-5-some-pop,genotype-conflict 787 chr1 26526438 26526439 rs17257155 0 + A A A/G genomic single unknown 0 0 missense exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4344.000000,664.000000, 0.867412,0.132588, maf-5-some-pop,genotype-conflict 787 chr1 26527162 26527163 rs11247870 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1579.000000,3429.000000, 0.315296,0.684704, maf-5-some-pop,maf-5-all-pops,genotype-conflict 787 chr1 26539055 26539056 rs6676630 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3576.000000,1432.000000, 0.714058,0.285942, maf-5-some-pop 787 chr1 26542945 26542946 rs6682532 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop 787 chr1 26547315 26547316 rs17163713 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop 787 chr1 26549398 26549399 rs17163720 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop,maf-5-all-pops 787 chr1 26549747 26549748 rs12122527 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop,maf-5-all-pops 787 chr1 26560050 26560051 rs6598947 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop 787 chr1 26562030 26562031 rs4329500 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1378.000000,3630.000000, 0.275160,0.724840, maf-5-some-pop 787 chr1 26562760 26562761 rs6671368 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4974.000000,34.000000, 0.993211,0.006789, 787 chr1 26565664 26565665 rs2050475 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3631.000000,1377.000000, 0.725040,0.274960, maf-5-some-pop 787 chr1 26566186 26566187 rs12134756 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop 787 chr1 26568164 26568165 rs17163749 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop,genotype-conflict 787 chr1 26570008 26570009 rs17257169 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop,genotype-conflict 787 chr1 26576031 26576032 rs10902724 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1369.000000,3639.000000, 0.273363,0.726637, maf-5-some-pop 787 chr1 26589051 26589052 rs6674410 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops 787 chr1 26597085 26597086 rs11247893 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,genotype-conflict 787 chr1 26597143 26597144 rs12757113 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1952.000000,3056.000000, 0.389776,0.610224, maf-5-some-pop,maf-5-all-pops 787 chr1 26597188 26597189 rs12145403 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop 787 chr1 26597672 26597673 rs11247894 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2634.000000,2374.000000, 0.525958,0.474042, maf-5-some-pop,maf-5-all-pops 787 chr1 26601384 26601385 rs3795685 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1954.000000,3054.000000,3054.000000,1954.000000, 0.195088,0.304912,0.304912,0.195088, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26622888 26622889 rs7541333 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2833.000000,2175.000000, 0.565695,0.434305, maf-5-some-pop,maf-5-all-pops 788 chr1 26622973 26622974 rs4659423 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,C, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop 788 chr1 26624326 26624327 rs4290051 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop 788 chr1 26632780 26632781 rs3795684 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2844.000000,2164.000000,2164.000000,2844.000000, 0.283946,0.216054,0.216054,0.283946, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26639633 26639634 rs12726972 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1945.000000,3063.000000, 0.388379,0.611621, maf-5-some-pop,genotype-conflict 788 chr1 26648033 26648034 rs4526602 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2109.000000,2899.000000, 0.421126,0.578874, maf-5-some-pop,maf-5-all-pops 788 chr1 26648380 26648381 rs17163868 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4237.000000,771.000000, 0.846046,0.153954, maf-5-some-pop 788 chr1 26648533 26648534 rs11810112 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 788 chr1 26650549 26650550 rs11247915 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 1552.000000,3456.000000, 0.309904,0.690096, maf-5-some-pop,microattr-tpa 788 chr1 26651131 26651132 rs7544018 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26655461 26655462 rs12057290 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops 788 chr1 26655506 26655507 rs11247917 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop 788 chr1 26656990 26656991 rs11247918 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2184.000000,2824.000000, 0.436102,0.563898, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26657684 26657685 rs4659372 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1630.000000,3378.000000, 0.325479,0.674521, maf-5-some-pop,maf-5-all-pops 788 chr1 26665477 26665478 rs11247920 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop 788 chr1 26665601 26665602 rs11247921 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop,maf-5-all-pops 788 chr1 26666808 26666809 rs10902741 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop,genotype-conflict 788 chr1 26673219 26673220 rs11247926 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26677720 26677721 rs11582416 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4017.000000,991.000000, 0.802117,0.197883, maf-5-some-pop,maf-5-all-pops 788 chr1 26679967 26679968 rs6691909 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1821.000000,3187.000000, 0.363618,0.636382, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26685189 26685190 rs7556628 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1299.000000,3709.000000, 0.259385,0.740615, maf-5-some-pop,maf-5-all-pops 788 chr1 26689658 26689659 rs11247932 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop,maf-5-all-pops 788 chr1 26692049 26692050 rs4354529 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4467.000000,541.000000, 0.891973,0.108027, maf-5-some-pop 788 chr1 26698883 26698884 rs11247936 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 788 chr1 26698937 26698938 rs6703878 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2422.000000,2586.000000, 0.483626,0.516374, maf-5-some-pop,maf-5-all-pops 788 chr1 26699050 26699051 rs6699091 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop 788 chr1 26699102 26699103 rs11584185 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2386.000000,2622.000000, 0.476438,0.523562, maf-5-some-pop,maf-5-all-pops 788 chr1 26699156 26699157 rs11247937 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2582.000000,2426.000000, 0.515575,0.484425, maf-5-some-pop,maf-5-all-pops 788 chr1 26700630 26700631 rs12079255 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3586.000000,1422.000000, 0.716054,0.283946, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26704329 26704330 rs6598962 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2832.000000,2176.000000, 0.565495,0.434505, maf-5-some-pop,maf-5-all-pops 788 chr1 26705639 26705640 rs12037475 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3763.000000,1245.000000, 0.751398,0.248602, maf-5-some-pop,maf-5-all-pops 788 chr1 26709503 26709504 rs7529342 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1367.000000,3641.000000, 0.272963,0.727037, maf-5-some-pop,maf-5-all-pops 788 chr1 26715231 26715232 rs4436378 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3077.000000,1931.000000, 0.614417,0.385583, maf-5-some-pop,maf-5-all-pops 788 chr1 26725431 26725432 rs11591111 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1662.000000,3346.000000, 0.331869,0.668131, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26726836 26726837 rs11247950 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3440.000000,1568.000000, 0.686901,0.313099, maf-5-some-pop,maf-5-all-pops,genotype-conflict 788 chr1 26727204 26727205 rs4360511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1568.000000,3440.000000, 0.313099,0.686901, maf-5-some-pop,maf-5-all-pops 788 chr1 26729573 26729574 rs7556500 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3438.000000,1570.000000, 0.686502,0.313498, maf-5-some-pop,maf-5-all-pops 788 chr1 26735357 26735358 rs17163902 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 789 chr1 26739932 26739933 rs11578260 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,genotype-conflict 789 chr1 26741105 26741106 rs17163904 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1715.000000,3293.000000, 0.342452,0.657548, maf-5-some-pop,maf-5-all-pops 789 chr1 26746326 26746327 rs6598964 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1990.000000,3018.000000, 0.397364,0.602636, maf-5-some-pop,genotype-conflict 789 chr1 26746806 26746807 rs12728900 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1283.000000,3725.000000, 0.256190,0.743810, maf-5-some-pop,maf-5-all-pops 789 chr1 26752991 26752992 rs4659441 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop,maf-5-all-pops 789 chr1 26756208 26756209 rs6697410 0 + G G G/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop,maf-5-all-pops,genotype-conflict 789 chr1 26759148 26759149 rs3811461 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2718.000000,2290.000000,2290.000000,2718.000000, 0.271366,0.228634,0.228634,0.271366, maf-5-some-pop,maf-5-all-pops 789 chr1 26773390 26773391 rs17162122 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 789 chr1 26775222 26775223 rs9438551 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 2354.000000,2654.000000, 0.470048,0.529952, maf-5-some-pop,maf-5-all-pops 789 chr1 26781554 26781555 rs12723046 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 789 chr1 26782679 26782680 rs3127011 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 359.000000,4649.000000,4649.000000,359.000000, 0.035843,0.464157,0.464157,0.035843, maf-5-some-pop,genotype-conflict 789 chr1 26791298 26791299 rs17162134 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 789 chr1 26804008 26804009 rs17162165 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop 789 chr1 26804405 26804406 rs11576300 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop 789 chr1 26825115 26825116 rs4659444 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2729.000000,2279.000000, 0.544928,0.455072, maf-5-some-pop,maf-5-all-pops 789 chr1 26825581 26825582 rs1982525 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 789 chr1 26846769 26846770 rs17163960 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop 789 chr1 26848385 26848386 rs12094989 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2886.000000,2122.000000, 0.576278,0.423722, maf-5-some-pop,maf-5-all-pops 789 chr1 26848623 26848624 rs6656230 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 789 chr1 26857953 26857954 rs10794535 0 + T T A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop 789 chr1 26863734 26863735 rs2100577 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop 789 chr1 26865043 26865044 rs17162184 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 789 chr1 26865484 26865485 rs6670311 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop,genotype-conflict 789 chr1 26865687 26865688 rs10493038 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 287.000000,4721.000000,4721.000000,287.000000, 0.028654,0.471346,0.471346,0.028654, maf-5-some-pop,genotype-conflict 789 chr1 26868638 26868639 rs6685701 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1096.000000,3912.000000, 0.218850,0.781150, maf-5-some-pop,maf-5-all-pops 789 chr1 26869609 26869610 rs921893 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3631.000000,1377.000000, 0.725040,0.274960, maf-5-some-pop,maf-5-all-pops 790 chr1 26873244 26873245 rs2278978 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop 790 chr1 26887591 26887592 rs1064196 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CANCER-GENOME,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WICVAR,WI_SSAHASNP,YUSUKE, 2 C,T, 2556.000000,2452.000000, 0.510383,0.489617, maf-5-some-pop,maf-5-all-pops 790 chr1 26894495 26894496 rs6657116 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 790 chr1 26895801 26895802 rs282175 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2493.000000,2515.000000,2515.000000,2493.000000, 0.248902,0.251098,0.251098,0.248902, maf-5-some-pop,maf-5-all-pops,genotype-conflict 790 chr1 26899124 26899125 rs282177 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2665.000000,2343.000000,2343.000000,2665.000000, 0.266074,0.233926,0.233926,0.266074, maf-5-some-pop,maf-5-all-pops,genotype-conflict 790 chr1 26899443 26899444 rs190737 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3481.000000,1527.000000,1527.000000,3481.000000, 0.347544,0.152456,0.152456,0.347544, maf-5-some-pop,genotype-conflict 790 chr1 26902693 26902694 rs6666757 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 790 chr1 26903569 26903570 rs406985 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2380.000000,2628.000000, 0.475240,0.524760, maf-5-some-pop,maf-5-all-pops,genotype-conflict 790 chr1 26909665 26909666 rs566421 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1989.000000,3019.000000,3019.000000,1989.000000, 0.198582,0.301418,0.301418,0.198582, maf-5-some-pop,maf-5-all-pops 790 chr1 26909764 26909765 rs6598858 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops 790 chr1 26909792 26909793 rs17162243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 790 chr1 26910683 26910684 rs4970508 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 790 chr1 26910753 26910754 rs4970510 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1300.000000,3708.000000, 0.259585,0.740415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 790 chr1 26917013 26917014 rs7551704 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4236.000000,772.000000, 0.845847,0.154153, maf-5-some-pop 790 chr1 26924880 26924881 rs17162249 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop 790 chr1 26925842 26925843 rs6699237 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,genotype-conflict 790 chr1 26929001 26929002 rs17162257 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1281.000000,3727.000000, 0.255791,0.744209, maf-5-some-pop 790 chr1 26940680 26940681 rs12137317 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop,genotype-conflict 790 chr1 26943336 26943337 rs6673174 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop 791 chr1 27041713 27041714 rs4589135 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3548.000000,1460.000000,1460.000000,3548.000000, 0.354233,0.145767,0.145767,0.354233, maf-5-some-pop 791 chr1 27042016 27042017 rs6668465 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop 791 chr1 27052079 27052080 rs11247593 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2598.000000,2410.000000, 0.518770,0.481230, maf-5-some-pop 791 chr1 27054828 27054829 rs7514052 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,WI_SSAHASNP, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 791 chr1 27068201 27068202 rs4970481 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 883.000000,4125.000000, 0.176318,0.823682, maf-5-some-pop,genotype-conflict 791 chr1 27093656 27093657 rs11247596 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop,genotype-conflict 792 chr1 27158343 27158344 rs12760759 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop 792 chr1 27174965 27174966 rs17162311 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,genotype-conflict 792 chr1 27176118 27176119 rs17162313 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop 792 chr1 27176430 27176431 rs17162315 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop 792 chr1 27177906 27177907 rs17162316 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop,genotype-conflict 792 chr1 27178849 27178850 rs17279224 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop 792 chr1 27191410 27191411 rs1883660 0 - A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 792 chr1 27206611 27206612 rs17162324 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 792 chr1 27236211 27236212 rs17162330 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop 792 chr1 27242008 27242009 rs11581460 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 855.000000,4153.000000, 0.170727,0.829273, maf-5-some-pop,maf-5-all-pops 792 chr1 27252822 27252823 rs17162339 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 A,C, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop,genotype-conflict 793 chr1 27266401 27266402 rs17162345 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop 793 chr1 27272843 27272844 rs7866 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN, 4 A,C,G,T, 66.000000,4942.000000,4942.000000,66.000000, 0.006589,0.493411,0.493411,0.006589, maf-5-some-pop 793 chr1 27272863 27272864 rs12239134 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 793 chr1 27290507 27290508 rs12751742 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP, 2 C,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 793 chr1 27304567 27304568 rs2993063 0 - A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2671.000000,2337.000000,2337.000000,2671.000000, 0.266673,0.233327,0.233327,0.266673, maf-5-some-pop 793 chr1 27312815 27312816 rs4970469 0 + G G A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,WI_SSAHASNP, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop 793 chr1 27322994 27322995 rs17162397 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop 793 chr1 27327431 27327432 rs17162404 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,genotype-conflict 793 chr1 27361218 27361219 rs6669265 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop 793 chr1 27365661 27365662 rs693801 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop 793 chr1 27375716 27375717 rs2256674 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 793 chr1 27378311 27378312 rs17162431 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 280.000000,4728.000000, 0.055911,0.944089, maf-5-some-pop 793 chr1 27378431 27378432 rs17162436 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop 793 chr1 27379949 27379950 rs6674164 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 793 chr1 27380878 27380879 rs517249 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop,maf-5-all-pops,genotype-conflict 793 chr1 27381439 27381440 rs522016 0 + A A A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 793 chr1 27382297 27382298 rs12035806 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop 793 chr1 27384314 27384315 rs10430146 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 793 chr1 27384988 27384989 rs11805628 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4443.000000,565.000000, 0.887181,0.112819, maf-5-some-pop,genotype-conflict 794 chr1 27400717 27400718 rs12130845 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop 794 chr1 27437216 27437217 rs12123077 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3591.000000,1417.000000, 0.717053,0.282947, maf-5-some-pop,maf-5-all-pops 794 chr1 27468018 27468019 rs4631721 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3406.000000,1602.000000,1602.000000,3406.000000, 0.340056,0.159944,0.159944,0.340056, maf-5-some-pop,maf-5-all-pops,genotype-conflict 794 chr1 27475488 27475489 rs11247612 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,maf-5-all-pops 794 chr1 27475784 27475785 rs11247613 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1216.000000,3792.000000, 0.242812,0.757188, maf-5-some-pop,maf-5-all-pops 794 chr1 27479241 27479242 rs7546453 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1251.000000,3757.000000, 0.249800,0.750200, maf-5-some-pop,maf-5-all-pops 794 chr1 27488242 27488243 rs17162456 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 794 chr1 27488298 27488299 rs12402451 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1194.000000,3814.000000, 0.238419,0.761581, maf-5-some-pop,maf-5-all-pops,genotype-conflict 794 chr1 27493678 27493679 rs12751422 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2719.000000,2289.000000, 0.542931,0.457069, maf-5-some-pop,maf-5-all-pops,genotype-conflict 794 chr1 27502718 27502719 rs12117705 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3690.000000,1318.000000, 0.736821,0.263179, maf-5-some-pop,maf-5-all-pops 794 chr1 27504392 27504393 rs6702703 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3690.000000,1318.000000, 0.736821,0.263179, maf-5-some-pop,maf-5-all-pops 794 chr1 27520864 27520865 rs12753649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3417.000000,1591.000000, 0.682308,0.317692, maf-5-some-pop,maf-5-all-pops 794 chr1 27521503 27521504 rs7542139 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop,maf-5-all-pops 794 chr1 27522861 27522862 rs11805918 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM, 2 G,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 795 chr1 27543522 27543523 rs10751722 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 819.000000,4189.000000, 0.163538,0.836462, maf-5-some-pop 795 chr1 27556380 27556381 rs4596924 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4865.000000,143.000000,143.000000,4865.000000, 0.485723,0.014277,0.014277,0.485723, maf-5-some-pop,genotype-conflict 795 chr1 27556456 27556457 rs7515122 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4225.000000,783.000000, 0.843650,0.156350, maf-5-some-pop,genotype-conflict 795 chr1 27588379 27588380 rs6598881 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4897.000000,111.000000, 0.977835,0.022165, maf-5-some-pop 795 chr1 27591016 27591017 rs6689868 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4501.000000,507.000000, 0.898762,0.101238, maf-5-some-pop 795 chr1 27595861 27595862 rs11589265 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4467.000000,541.000000, 0.891973,0.108027, maf-5-some-pop,genotype-conflict 795 chr1 27610068 27610069 rs10902656 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1394.000000,3614.000000, 0.278355,0.721645, maf-5-some-pop,maf-5-all-pops 795 chr1 27610745 27610746 rs4970516 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1394.000000,3614.000000, 0.278355,0.721645, maf-5-some-pop,maf-5-all-pops,genotype-conflict 795 chr1 27624081 27624082 rs17162533 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 795 chr1 27626532 27626533 rs10751723 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4503.000000,505.000000, 0.899161,0.100839, maf-5-some-pop 795 chr1 27628544 27628545 rs12752623 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop,genotype-conflict 795 chr1 27635248 27635249 rs4463695 0 - T T A/C genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 109.000000,4899.000000,4899.000000,109.000000, 0.010883,0.489117,0.489117,0.010883, maf-5-some-pop 795 chr1 27643516 27643517 rs4575106 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4870.000000,138.000000,138.000000,4870.000000, 0.486222,0.013778,0.013778,0.486222, maf-5-some-pop 796 chr1 27659964 27659965 rs6687283 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,genotype-conflict 796 chr1 27660730 27660731 rs6663062 0 + G G C/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 11 1000GENOMES,AFFY,APPLERA_GI,BCM_SSAHASNP,CLINSEQ_SNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,TISHKOFF, 2 C,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 796 chr1 27663148 27663149 rs9633437 0 + C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 796 chr1 27679691 27679692 rs11247639 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2596.000000,2412.000000, 0.518371,0.481629, maf-5-some-pop,maf-5-all-pops 796 chr1 27684395 27684396 rs4970520 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1303.000000,3705.000000, 0.260184,0.739816, maf-5-some-pop 796 chr1 27686062 27686063 rs7521552 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,genotype-conflict 796 chr1 27686620 27686621 rs17162551 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 796 chr1 27690296 27690297 rs4075731 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1775.000000,3233.000000,3233.000000,1775.000000, 0.177216,0.322784,0.322784,0.177216, maf-5-some-pop,maf-5-all-pops,genotype-conflict 796 chr1 27699448 27699449 rs10794501 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1378.000000,3630.000000, 0.275160,0.724840, maf-5-some-pop,maf-5-all-pops 796 chr1 27703044 27703045 rs4134410 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 37.000000,4971.000000,4971.000000,37.000000, 0.003694,0.496306,0.496306,0.003694, 796 chr1 27716696 27716697 rs2504784 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 733.000000,4275.000000, 0.146366,0.853634, maf-5-some-pop 796 chr1 27728039 27728040 rs7516721 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4533.000000,475.000000, 0.905152,0.094848, maf-5-some-pop,genotype-conflict 796 chr1 27737334 27737335 rs733899 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,genotype-conflict 796 chr1 27742830 27742831 rs743043 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1364.000000,3644.000000,3644.000000,1364.000000, 0.136182,0.363818,0.363818,0.136182, maf-5-some-pop 796 chr1 27744512 27744513 rs1005413 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 1712.000000,3296.000000, 0.341853,0.658147, maf-5-some-pop,maf-5-all-pops 796 chr1 27752580 27752581 rs17162602 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 796 chr1 27752740 27752741 rs9438514 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1215.000000,3793.000000, 0.242612,0.757388, maf-5-some-pop,maf-5-all-pops 796 chr1 27755668 27755669 rs2474293 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,C, 3616.000000,1392.000000, 0.722045,0.277955, maf-5-some-pop,maf-5-all-pops,genotype-conflict 796 chr1 27755908 27755909 rs2504772 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,T, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop 796 chr1 27774782 27774783 rs2474302 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM, 2 C,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop 797 chr1 27800481 27800482 rs6685856 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3307.000000,1701.000000, 0.660343,0.339657, maf-5-some-pop,maf-5-all-pops 797 chr1 27801534 27801535 rs9438575 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3621.000000,1387.000000, 0.723043,0.276957, maf-5-some-pop 797 chr1 27844992 27844993 rs9438588 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop 797 chr1 27849299 27849300 rs6598886 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 882.000000,4126.000000, 0.176118,0.823882, maf-5-some-pop,microattr-tpa,genotype-conflict 797 chr1 27856522 27856523 rs7554818 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop 797 chr1 27864962 27864963 rs6677211 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 797 chr1 27872826 27872827 rs6598887 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 797 chr1 27873000 27873001 rs17357586 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,genotype-conflict 798 chr1 27931697 27931698 rs4908343 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PAGE_STUDY,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2615.000000,2393.000000, 0.522165,0.477835, maf-5-some-pop,genotype-conflict 798 chr1 27931927 27931928 rs17162665 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop 798 chr1 27934862 27934863 rs545502 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 122.000000,4886.000000,4886.000000,122.000000, 0.012181,0.487819,0.487819,0.012181, maf-5-some-pop 798 chr1 27937455 27937456 rs6598891 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop 798 chr1 27943999 27944000 rs1292089 0 - T T A/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 798 chr1 27945358 27945359 rs17162676 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4370.000000,638.000000, 0.872604,0.127396, maf-5-some-pop 798 chr1 27960010 27960011 rs6658795 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4221.000000,787.000000, 0.842851,0.157149, maf-5-some-pop,maf-5-all-pops 798 chr1 27964774 27964775 rs530599 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1263.000000,3745.000000,3745.000000,1263.000000, 0.126098,0.373902,0.373902,0.126098, maf-5-some-pop 798 chr1 27968661 27968662 rs12076783 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 798 chr1 27970067 27970068 rs1292082 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 205.000000,4803.000000,4803.000000,205.000000, 0.020467,0.479533,0.479533,0.020467, maf-5-some-pop 798 chr1 27971501 27971502 rs1292081 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3368.000000,1640.000000,1640.000000,3368.000000, 0.336262,0.163738,0.163738,0.336262, maf-5-some-pop,maf-5-all-pops 798 chr1 27972835 27972836 rs17162700 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 798 chr1 27974026 27974027 rs1292075 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BGI,BUSHMAN,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1274.000000,3734.000000,3734.000000,1274.000000, 0.127196,0.372804,0.372804,0.127196, maf-5-some-pop 798 chr1 27978663 27978664 rs12087211 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1203.000000,3805.000000, 0.240216,0.759784, maf-5-some-pop 798 chr1 27979062 27979063 rs12091164 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop 798 chr1 27980010 27980011 rs11810311 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 798 chr1 27981826 27981827 rs11247652 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 798 chr1 27981866 27981867 rs12749246 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,genotype-conflict 798 chr1 27996137 27996138 rs2808428 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4747.000000,261.000000,261.000000,4747.000000, 0.473942,0.026058,0.026058,0.473942, maf-5-some-pop 798 chr1 27997134 27997135 rs2808427 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 4868.000000,140.000000,140.000000,4868.000000, 0.486022,0.013978,0.013978,0.486022, maf-5-some-pop,genotype-conflict 798 chr1 27997307 27997308 rs12024391 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4129.000000,879.000000, 0.824481,0.175519, maf-5-some-pop 798 chr1 27997567 27997568 rs17162722 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 798 chr1 27998393 27998394 rs10902662 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4486.000000,522.000000, 0.895767,0.104233, maf-5-some-pop 798 chr1 28009909 28009910 rs2788683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 798 chr1 28012279 28012280 rs2788686 0 + G G C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop 798 chr1 28013499 28013500 rs2788690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,genotype-conflict 798 chr1 28013782 28013783 rs11803176 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop 798 chr1 28015434 28015435 rs4609453 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4239.000000,769.000000,769.000000,4239.000000, 0.423223,0.076777,0.076777,0.423223, maf-5-some-pop 798 chr1 28020379 28020380 rs2808419 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3961.000000,1047.000000,1047.000000,3961.000000, 0.395467,0.104533,0.104533,0.395467, maf-5-some-pop 798 chr1 28025970 28025971 rs12030184 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1046.000000,3962.000000, 0.208866,0.791134, maf-5-some-pop 798 chr1 28039146 28039147 rs1736541 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop 798 chr1 28045815 28045816 rs1767511 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 2 A,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 798 chr1 28046494 28046495 rs1767512 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1267.000000,3741.000000, 0.252995,0.747005, maf-5-some-pop,genotype-conflict 798 chr1 28046536 28046537 rs7514493 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop 799 chr1 28051656 28051657 rs2272796 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4612.000000,396.000000, 0.920927,0.079074, maf-5-some-pop 799 chr1 28056341 28056342 rs1767523 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1316.000000,3692.000000, 0.262780,0.737220, maf-5-some-pop 799 chr1 28063021 28063022 rs9726184 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop 799 chr1 28084734 28084735 rs10794504 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3809.000000,1199.000000, 0.760583,0.239417, maf-5-some-pop,genotype-conflict 799 chr1 28093524 28093525 rs12075975 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop 799 chr1 28101706 28101707 rs11247683 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3763.000000,1245.000000, 0.751398,0.248602, maf-5-some-pop 799 chr1 28105708 28105709 rs6598902 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1263.000000,3745.000000, 0.252196,0.747804, maf-5-some-pop,genotype-conflict 799 chr1 28106232 28106233 rs2064072 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4295.000000,713.000000, 0.857628,0.142372, maf-5-some-pop,genotype-conflict 799 chr1 28136806 28136807 rs17162805 0 + G G C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 8 1000GENOMES,AFFY,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 3 C,G,T, 2.000000,4892.000000,114.000000, 0.000399,0.976837,0.022764, maf-5-some-pop,genotype-conflict 799 chr1 28139264 28139265 rs17162810 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop 799 chr1 28146305 28146306 rs17162817 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 799 chr1 28146681 28146682 rs41465049 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 4 1000GENOMES,AFFY,AFFY_GWHS,JMKIDD_LAB, 4 A,C,G,T, 4892.000000,116.000000,116.000000,4892.000000, 0.488419,0.011581,0.011581,0.488419, maf-5-some-pop 799 chr1 28154898 28154899 rs17162826 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 799 chr1 28159357 28159358 rs17162837 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 C,T, 707.000000,4301.000000, 0.141174,0.858826, maf-5-some-pop 799 chr1 28160198 28160199 rs17362501 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4317.000000,691.000000, 0.862021,0.137979, maf-5-some-pop,genotype-conflict 799 chr1 28169401 28169402 rs3753393 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4444.000000,564.000000,564.000000,4444.000000, 0.443690,0.056310,0.056310,0.443690, maf-5-some-pop 799 chr1 28173396 28173397 rs12089386 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop,genotype-conflict 800 chr1 28187715 28187716 rs11247696 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop 800 chr1 28203652 28203653 rs11247703 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3697.000000,1311.000000, 0.738219,0.261781, maf-5-some-pop,maf-5-all-pops,genotype-conflict 800 chr1 28212805 28212806 rs11399 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SEQUENOM,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop 800 chr1 28212974 28212975 rs6564 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2301.000000,2707.000000,2707.000000,2301.000000, 0.229732,0.270268,0.270268,0.229732, maf-5-some-pop,maf-5-all-pops 800 chr1 28213212 28213213 rs1474908 0 - A A C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2698.000000,2310.000000,2310.000000,2698.000000, 0.269369,0.230631,0.230631,0.269369, maf-5-some-pop,maf-5-all-pops 800 chr1 28216190 28216191 rs10751725 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 800 chr1 28216401 28216402 rs17162866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EGP_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 800 chr1 28220473 28220474 rs17162878 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 800 chr1 28220483 28220484 rs17257252 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop 800 chr1 28221436 28221437 rs12058265 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop 800 chr1 28221553 28221554 rs3766396 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2733.000000,2275.000000,2275.000000,2733.000000, 0.272863,0.227137,0.227137,0.272863, maf-5-some-pop,maf-5-all-pops 800 chr1 28224311 28224312 rs2295367 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2645.000000,2363.000000, 0.528155,0.471845, maf-5-some-pop,maf-5-all-pops 800 chr1 28233288 28233289 rs6598912 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2360.000000,2648.000000, 0.471246,0.528754, maf-5-some-pop,maf-5-all-pops 800 chr1 28234053 28234054 rs7535816 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2734.000000,2274.000000, 0.545927,0.454073, maf-5-some-pop,maf-5-all-pops 800 chr1 28234324 28234325 rs7536088 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops,genotype-conflict 800 chr1 28236681 28236682 rs6700473 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1670.000000,3338.000000, 0.333466,0.666534, maf-5-some-pop,maf-5-all-pops 800 chr1 28245100 28245101 rs2815700 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4734.000000,274.000000,274.000000,4734.000000, 0.472644,0.027356,0.027356,0.472644, maf-5-some-pop 800 chr1 28248587 28248588 rs12144736 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3205.000000,1803.000000, 0.639976,0.360024, maf-5-some-pop,maf-5-all-pops 800 chr1 28249682 28249683 rs4908373 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 800 chr1 28254716 28254717 rs4259684 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 942.000000,4066.000000,4066.000000,942.000000, 0.094050,0.405950,0.405950,0.094050, maf-5-some-pop 800 chr1 28260319 28260320 rs11587393 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop,genotype-conflict 800 chr1 28263952 28263953 rs17162907 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 800 chr1 28264080 28264081 rs7524082 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1393.000000,3615.000000, 0.278155,0.721845, maf-5-some-pop,maf-5-all-pops,genotype-conflict 800 chr1 28264658 28264659 rs11247729 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 973.000000,4035.000000, 0.194289,0.805711, maf-5-some-pop 800 chr1 28267868 28267869 rs1010082 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop,maf-5-all-pops 800 chr1 28268705 28268706 rs4908341 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2289.000000,2719.000000, 0.457069,0.542931, maf-5-some-pop,maf-5-all-pops,genotype-conflict 800 chr1 28270045 28270046 rs12409437 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 800 chr1 28270736 28270737 rs11247730 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2914.000000,2094.000000, 0.581869,0.418131, maf-5-some-pop,maf-5-all-pops 800 chr1 28273015 28273016 rs4908379 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3350.000000,1658.000000, 0.668930,0.331070, maf-5-some-pop,maf-5-all-pops,genotype-conflict 800 chr1 28274983 28274984 rs10902682 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1657.000000,3351.000000, 0.330871,0.669129, maf-5-some-pop,maf-5-all-pops 800 chr1 28293711 28293712 rs6673064 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,TISHKOFF, 2 A,G, 33.000000,4975.000000, 0.006589,0.993411, maf-5-some-pop 800 chr1 28294709 28294710 rs4466676 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 660.000000,4348.000000,4348.000000,660.000000, 0.065895,0.434105,0.434105,0.065895, maf-5-some-pop 800 chr1 28298950 28298951 rs6699701 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3192.000000,1816.000000, 0.637380,0.362620, maf-5-some-pop,maf-5-all-pops 800 chr1 28299345 28299346 rs12565238 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4356.000000,652.000000, 0.869808,0.130192, maf-5-some-pop 800 chr1 28305885 28305886 rs7543431 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 800 chr1 28310959 28310960 rs12136806 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 800 chr1 28311223 28311224 rs12040932 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3290.000000,1718.000000, 0.656949,0.343051, maf-5-some-pop,maf-5-all-pops 801 chr1 28314422 28314423 rs2492958 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,genotype-conflict 801 chr1 28315460 28315461 rs10493035 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 652.000000,4356.000000,4356.000000,652.000000, 0.065096,0.434904,0.434904,0.065096, maf-5-some-pop,genotype-conflict 801 chr1 28319483 28319484 rs7549174 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3161.000000,1847.000000, 0.631190,0.368810, maf-5-some-pop 801 chr1 28339287 28339288 rs6691100 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 1076.000000,3932.000000, 0.214856,0.785144, maf-5-some-pop,maf-5-all-pops 801 chr1 28339932 28339933 rs6683268 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops 801 chr1 28343517 28343518 rs17162928 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4353.000000,655.000000, 0.869209,0.130791, maf-5-some-pop 801 chr1 28351965 28351966 rs12025113 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 728.000000,4280.000000, 0.145367,0.854633, maf-5-some-pop 801 chr1 28362227 28362228 rs2815706 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM, 4 A,C,G,T, 4789.000000,219.000000,219.000000,4789.000000, 0.478135,0.021865,0.021865,0.478135, maf-5-some-pop 801 chr1 28372424 28372425 rs2761454 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP, 4 A,C,G,T, 220.000000,4788.000000,4788.000000,220.000000, 0.021965,0.478035,0.478035,0.021965, maf-5-some-pop,genotype-conflict 801 chr1 28387136 28387137 rs537374 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4581.000000,427.000000,427.000000,4581.000000, 0.457368,0.042632,0.042632,0.457368, maf-5-some-pop,genotype-conflict 801 chr1 28387180 28387181 rs12137852 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1177.000000,3831.000000, 0.235024,0.764976, maf-5-some-pop,maf-5-all-pops 801 chr1 28391481 28391482 rs2790717 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1724.000000,3284.000000,3284.000000,1724.000000, 0.172125,0.327875,0.327875,0.172125, maf-5-some-pop,maf-5-all-pops,genotype-conflict 801 chr1 28400877 28400878 rs11807799 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1173.000000,3835.000000, 0.234225,0.765775, maf-5-some-pop,maf-5-all-pops 801 chr1 28416854 28416855 rs2871807 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4043.000000,965.000000,965.000000,4043.000000, 0.403654,0.096346,0.096346,0.403654, maf-5-some-pop 801 chr1 28416897 28416898 rs2311587 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 648.000000,4360.000000,4360.000000,648.000000, 0.064696,0.435304,0.435304,0.064696, maf-5-some-pop 801 chr1 28424909 28424910 rs6678050 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3254.000000,1754.000000, 0.649760,0.350240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 801 chr1 28426000 28426001 rs11247752 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1774.000000,3234.000000, 0.354233,0.645767, maf-5-some-pop,maf-5-all-pops 801 chr1 28429596 28429597 rs523054 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 2 C,G, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop 801 chr1 28431099 28431100 rs2481981 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2404.000000,2604.000000,2604.000000,2404.000000, 0.240016,0.259984,0.259984,0.240016, maf-5-some-pop,maf-5-all-pops 801 chr1 28437823 28437824 rs516140 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,genotype-conflict 802 chr1 28450287 28450288 rs11806397 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 789.000000,4219.000000, 0.157548,0.842452, maf-5-some-pop 802 chr1 28452888 28452889 rs515649 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3190.000000,1818.000000, 0.636981,0.363019, maf-5-some-pop,maf-5-all-pops 802 chr1 28459917 28459918 rs11590817 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,G, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop,maf-5-all-pops,genotype-conflict 802 chr1 28460705 28460706 rs11247756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 802 chr1 28460744 28460745 rs11247757 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3303.000000,1705.000000, 0.659545,0.340455, maf-5-some-pop,maf-5-all-pops 802 chr1 28464177 28464178 rs12088946 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1244.000000,3764.000000, 0.248403,0.751597, maf-5-some-pop,maf-5-all-pops 802 chr1 28490830 28490831 rs313149 0 - T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 802 chr1 28498062 28498063 rs17162976 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 802 chr1 28498880 28498881 rs17162977 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 802 chr1 28503602 28503603 rs17162980 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 802 chr1 28515291 28515292 rs2938867 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3573.000000,1435.000000,1435.000000,3573.000000, 0.356729,0.143271,0.143271,0.356729, maf-5-some-pop,maf-5-all-pops 802 chr1 28519851 28519852 rs905909 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,RIKENSNPRC,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3455.000000,1553.000000,1553.000000,3455.000000, 0.344948,0.155052,0.155052,0.344948, maf-5-some-pop,maf-5-all-pops,genotype-conflict 802 chr1 28520232 28520233 rs905907 0 - C C C/G genomic single unknown 0 0 untranslated-5 exact 1 12 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 802 chr1 28521478 28521479 rs17162987 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 802 chr1 28534970 28534971 rs3738163 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,YUSUKE, 2 C,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop,genotype-conflict 802 chr1 28535232 28535233 rs510379 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1768.000000,3240.000000, 0.353035,0.646965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 802 chr1 28550447 28550448 rs4908393 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops,genotype-conflict 802 chr1 28555425 28555426 rs567086 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1770.000000,3238.000000,3238.000000,1770.000000, 0.176717,0.323283,0.323283,0.176717, maf-5-some-pop,maf-5-all-pops 802 chr1 28563649 28563650 rs3767303 0 - G G C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,YUSUKE, 4 A,C,G,T, 662.000000,4346.000000,4346.000000,662.000000, 0.066094,0.433906,0.433906,0.066094, maf-5-some-pop,genotype-conflict 802 chr1 28563758 28563759 rs6686978 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,TISHKOFF, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop 802 chr1 28564278 28564279 rs9508 0 - A A C/T genomic single unknown 0 0 intron,missense,untranslated-3 exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GENAISSANCE,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3353.000000,1655.000000,1655.000000,3353.000000, 0.334764,0.165236,0.165236,0.334764, maf-5-some-pop,maf-5-all-pops 802 chr1 28565560 28565561 rs10493031 0 - T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 802 chr1 28566607 28566608 rs576550 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1535.000000,3473.000000,3473.000000,1535.000000, 0.153255,0.346745,0.346745,0.153255, maf-5-some-pop,maf-5-all-pops 802 chr1 28567204 28567205 rs12129991 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop 802 chr1 28572316 28572317 rs12129745 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 1451.000000,3557.000000, 0.289736,0.710264, maf-5-some-pop,maf-5-all-pops 802 chr1 28572479 28572480 rs568095 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 C,T, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 803 chr1 28596083 28596084 rs543240 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3180.000000,1828.000000,1828.000000,3180.000000, 0.317492,0.182508,0.182508,0.317492, maf-5-some-pop,maf-5-all-pops 803 chr1 28596496 28596497 rs17163090 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 803 chr1 28604672 28604673 rs7532379 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops 803 chr1 28605318 28605319 rs11247766 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1645.000000,3363.000000, 0.328474,0.671526, maf-5-some-pop,maf-5-all-pops,genotype-conflict 803 chr1 28612963 28612964 rs6692890 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop 803 chr1 28614248 28614249 rs17163118 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 803 chr1 28623599 28623600 rs6669686 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1690.000000,3318.000000, 0.337460,0.662540, maf-5-some-pop,maf-5-all-pops 803 chr1 28638258 28638259 rs1283628 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4331.000000,677.000000,677.000000,4331.000000, 0.432408,0.067592,0.067592,0.432408, maf-5-some-pop,genotype-conflict 803 chr1 28640772 28640773 rs7523070 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1359.000000,3649.000000, 0.271366,0.728634, maf-5-some-pop,maf-5-all-pops 803 chr1 28641084 28641085 rs7547319 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 803 chr1 28641824 28641825 rs7528486 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1046.000000,3962.000000, 0.208866,0.791134, maf-5-some-pop,maf-5-all-pops,genotype-conflict 803 chr1 28659695 28659696 rs10794514 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2823.000000,2185.000000, 0.563698,0.436302, maf-5-some-pop,maf-5-all-pops 803 chr1 28660467 28660468 rs6666822 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM, 2 A,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 803 chr1 28676094 28676095 rs4908398 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1257.000000,3751.000000, 0.250998,0.749002, maf-5-some-pop,genotype-conflict 803 chr1 28690170 28690171 rs6682922 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3661.000000,1347.000000, 0.731030,0.268970, maf-5-some-pop,maf-5-all-pops 803 chr1 28692549 28692550 rs9659647 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop,maf-5-all-pops 804 chr1 28716678 28716679 rs10751728 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1585.000000,3423.000000, 0.316494,0.683506, maf-5-some-pop,maf-5-all-pops 804 chr1 28718700 28718701 rs6694681 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM, 2 C,G, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 804 chr1 28721066 28721067 rs6698531 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop 804 chr1 28729141 28729142 rs5013826 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 3353.000000,1655.000000,1655.000000,3353.000000, 0.334764,0.165236,0.165236,0.334764, maf-5-some-pop,maf-5-all-pops,genotype-conflict 804 chr1 28729563 28729564 rs11247807 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1653.000000,3355.000000, 0.330072,0.669928, maf-5-some-pop,maf-5-all-pops 804 chr1 28813921 28813922 rs10915199 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 3359.000000,1649.000000, 0.670727,0.329273, maf-5-some-pop,maf-5-all-pops 804 chr1 28815281 28815282 rs7518859 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4483.000000,525.000000, 0.895168,0.104832, maf-5-some-pop 804 chr1 28828892 28828893 rs11804512 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop 804 chr1 28829699 28829700 rs4654362 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop,maf-5-all-pops 804 chr1 28832922 28832923 rs2840757 0 + C C A/C/G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 SingleClassQuadAllelic,InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,T, 1039.000000,3958.000000,11.000000, 0.207468,0.790336,0.002196, maf-5-some-pop,maf-5-all-pops,genotype-conflict 805 chr1 28863829 28863830 rs2853731 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop 805 chr1 28864434 28864435 rs2227977 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 17 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,TISHKOFF,WIAF-CSNP, 2 A,G, 4594.000000,414.000000, 0.917332,0.082668, maf-5-some-pop,genotype-conflict 805 chr1 28888100 28888101 rs16837580 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 805 chr1 28905565 28905566 rs1342086 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 805 chr1 28934901 28934902 rs12077489 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 805 chr1 28941332 28941333 rs10915181 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop 805 chr1 28950861 28950862 rs4316338 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 782.000000,4226.000000,4226.000000,782.000000, 0.078075,0.421925,0.421925,0.078075, maf-5-some-pop,maf-5-all-pops 806 chr1 28990269 28990270 rs6673481 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3057.000000,1951.000000, 0.610423,0.389577, maf-5-some-pop,maf-5-all-pops,genotype-conflict 806 chr1 29007728 29007729 rs9426394 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop 806 chr1 29045122 29045123 rs11578325 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2635.000000,2373.000000, 0.526158,0.473842, maf-5-some-pop,maf-5-all-pops 806 chr1 29047109 29047110 rs12403009 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2699.000000,2309.000000, 0.538938,0.461062, maf-5-some-pop,maf-5-all-pops 806 chr1 29059361 29059362 rs4654320 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2609.000000,2399.000000, 0.520966,0.479034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 806 chr1 29080165 29080166 rs7520756 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2462.000000,2546.000000, 0.491613,0.508387, maf-5-some-pop,maf-5-all-pops,genotype-conflict 807 chr1 29100791 29100792 rs1317364 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2536.000000,2472.000000, 0.506390,0.493610, maf-5-some-pop,maf-5-all-pops 807 chr1 29140747 29140748 rs2236860 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1151.000000,3857.000000,3857.000000,1151.000000, 0.114916,0.385084,0.385084,0.114916, maf-5-some-pop,maf-5-all-pops 807 chr1 29145187 29145188 rs678849 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2709.000000,2299.000000, 0.540935,0.459065, maf-5-some-pop,maf-5-all-pops,genotype-conflict 807 chr1 29151244 29151245 rs4654322 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1966.000000,3042.000000, 0.392572,0.607428, maf-5-some-pop,maf-5-all-pops 807 chr1 29151843 29151844 rs419335 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2875.000000,2133.000000, 0.574081,0.425919, maf-5-some-pop,genotype-conflict 807 chr1 29154254 29154255 rs482692 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,genotype-conflict 807 chr1 29155663 29155664 rs589628 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop 807 chr1 29156693 29156694 rs188116 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop,genotype-conflict 807 chr1 29161824 29161825 rs2236856 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1227.000000,3781.000000,3781.000000,1227.000000, 0.122504,0.377496,0.377496,0.122504, maf-5-some-pop,maf-5-all-pops 807 chr1 29161998 29161999 rs2236855 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1226.000000,3782.000000,3782.000000,1226.000000, 0.122404,0.377596,0.377596,0.122404, maf-5-some-pop,maf-5-all-pops 807 chr1 29162464 29162465 rs760589 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1675.000000,3333.000000,3333.000000,1675.000000, 0.167232,0.332768,0.332768,0.167232, maf-5-some-pop,maf-5-all-pops,genotype-conflict 807 chr1 29162567 29162568 rs760588 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3334.000000,1674.000000,1674.000000,3334.000000, 0.332867,0.167133,0.167133,0.332867, maf-5-some-pop,maf-5-all-pops,genotype-conflict 807 chr1 29164560 29164561 rs538485 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 807 chr1 29164581 29164582 rs10753331 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1817.000000,3191.000000, 0.362819,0.637181, maf-5-some-pop,maf-5-all-pops 807 chr1 29174945 29174946 rs529520 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2275.000000,2733.000000,2733.000000,2275.000000, 0.227137,0.272863,0.272863,0.227137, maf-5-some-pop,maf-5-all-pops,genotype-conflict 807 chr1 29175051 29175052 rs499062 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3715.000000,1293.000000,1293.000000,3715.000000, 0.370907,0.129093,0.129093,0.370907, maf-5-some-pop 807 chr1 29176212 29176213 rs12749204 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop 807 chr1 29181524 29181525 rs508448 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2101.000000,2907.000000,2907.000000,2101.000000, 0.209764,0.290236,0.290236,0.209764, maf-5-some-pop,maf-5-all-pops 807 chr1 29185092 29185093 rs12404612 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop 807 chr1 29186858 29186859 rs6690810 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop,maf-5-all-pops 807 chr1 29191562 29191563 rs204074 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4121.000000,887.000000,887.000000,4121.000000, 0.411442,0.088558,0.088558,0.411442, maf-5-some-pop 807 chr1 29194817 29194818 rs204069 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 895.000000,4113.000000,4113.000000,895.000000, 0.089357,0.410643,0.410643,0.089357, maf-5-some-pop,maf-5-all-pops,genotype-conflict 807 chr1 29194900 29194901 rs1485471 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 970.000000,4038.000000,4038.000000,970.000000, 0.096845,0.403155,0.403155,0.096845, maf-5-some-pop 807 chr1 29195756 29195757 rs204066 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4412.000000,596.000000,596.000000,4412.000000, 0.440495,0.059505,0.059505,0.440495, maf-5-some-pop 807 chr1 29200325 29200326 rs480076 0 - C C C/T genomic single by-cluster,by-hapmap 0.157859 0.2324 intron exact 1 ObservedMismatch 2 AFFY,ILLUMINA, 0 genotype-conflict,rs-cluster-nonoverlapping-alleles 807 chr1 29208955 29208956 rs157216 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 644.000000,4364.000000,4364.000000,644.000000, 0.064297,0.435703,0.435703,0.064297, maf-5-some-pop,genotype-conflict 807 chr1 29208996 29208997 rs157217 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4364.000000,644.000000,644.000000,4364.000000, 0.435703,0.064297,0.064297,0.435703, maf-5-some-pop 807 chr1 29220618 29220619 rs16837746 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop 807 chr1 29220968 29220969 rs760590 0 - G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 807 chr1 29223376 29223377 rs10915207 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2265.000000,2743.000000, 0.452276,0.547724, maf-5-some-pop,maf-5-all-pops 808 chr1 29242196 29242197 rs203278 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3058.000000,1950.000000, 0.610623,0.389377, maf-5-some-pop,maf-5-all-pops 808 chr1 29242453 29242454 rs203279 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop,genotype-conflict 808 chr1 29252321 29252322 rs12122962 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 808 chr1 29262532 29262533 rs150088 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 638.000000,4370.000000,4370.000000,638.000000, 0.063698,0.436302,0.436302,0.063698, maf-5-some-pop,genotype-conflict 808 chr1 29280264 29280265 rs10158728 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop,genotype-conflict 808 chr1 29280409 29280410 rs204059 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 1988.000000,3020.000000,3020.000000,1988.000000, 0.198482,0.301518,0.301518,0.198482, maf-5-some-pop,maf-5-all-pops 808 chr1 29281719 29281720 rs204058 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 3031.000000,1977.000000,1977.000000,3031.000000, 0.302616,0.197384,0.197384,0.302616, maf-5-some-pop,genotype-conflict 808 chr1 29283563 29283564 rs4654383 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1989.000000,3019.000000, 0.397165,0.602835, maf-5-some-pop,maf-5-all-pops 808 chr1 29294043 29294044 rs4275422 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 978.000000,4030.000000, 0.195288,0.804712, maf-5-some-pop,maf-5-all-pops 808 chr1 29298918 29298919 rs41385748 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 3 1000GENOMES,AFFY,AFFY_GWHS, 4 A,C,G,T, 4977.000000,31.000000,31.000000,4977.000000, 0.496905,0.003095,0.003095,0.496905, 808 chr1 29299177 29299178 rs957633 0 - C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 808 chr1 29309817 29309818 rs2762682 0 + T T C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 3 C,G,T, 4269.000000,3.000000,736.000000, 0.852436,0.000599,0.146965, maf-5-some-pop 808 chr1 29311073 29311074 rs12021667 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop 808 chr1 29319479 29319480 rs2985327 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1985.000000,3023.000000, 0.396366,0.603634, maf-5-some-pop,maf-5-all-pops 808 chr1 29333961 29333962 rs2985329 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1440.000000,3568.000000, 0.287540,0.712460, maf-5-some-pop,maf-5-all-pops 808 chr1 29335038 29335039 rs2985330 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,maf-5-all-pops 809 chr1 29369883 29369884 rs2985338 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2892.000000,2116.000000, 0.577476,0.422524, maf-5-some-pop,maf-5-all-pops,genotype-conflict 809 chr1 29371498 29371499 rs2985340 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 809 chr1 29396946 29396947 rs12130351 0 + C C C/T genomic single unknown 0 0 coding-synon,intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,genotype-conflict 809 chr1 29397789 29397790 rs4654388 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,genotype-conflict 809 chr1 29418415 29418416 rs6703599 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2113.000000,2895.000000, 0.421925,0.578075, maf-5-some-pop,maf-5-all-pops 809 chr1 29418959 29418960 rs2452767 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop,genotype-conflict 809 chr1 29429003 29429004 rs12045777 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2991.000000,2017.000000, 0.597244,0.402756, maf-5-some-pop,maf-5-all-pops 809 chr1 29437105 29437106 rs578800 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop,genotype-conflict 809 chr1 29452493 29452494 rs1767804 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TSC-CSHL, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop 809 chr1 29461132 29461133 rs12402749 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop,maf-5-all-pops,genotype-conflict 809 chr1 29472434 29472435 rs2452783 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1063.000000,3945.000000,3945.000000,1063.000000, 0.106130,0.393870,0.393870,0.106130, maf-5-some-pop 809 chr1 29478313 29478314 rs507786 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4594.000000,414.000000,414.000000,4594.000000, 0.458666,0.041334,0.041334,0.458666, maf-5-some-pop 809 chr1 29478418 29478419 rs2503005 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2478.000000,2530.000000,2530.000000,2478.000000, 0.247404,0.252596,0.252596,0.247404, maf-5-some-pop,maf-5-all-pops 810 chr1 29505612 29505613 rs1961570 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop 810 chr1 29507646 29507647 rs3094740 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 810 chr1 29518244 29518245 rs399891 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM, 4 A,C,G,T, 136.000000,4872.000000,4872.000000,136.000000, 0.013578,0.486422,0.486422,0.013578, maf-5-some-pop 810 chr1 29518292 29518293 rs3103882 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1267.000000,3741.000000,3741.000000,1267.000000, 0.126498,0.373502,0.373502,0.126498, maf-5-some-pop,maf-5-all-pops 810 chr1 29529942 29529943 rs12032476 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops 810 chr1 29533600 29533601 rs2452785 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2477.000000,2531.000000,2531.000000,2477.000000, 0.247304,0.252696,0.252696,0.247304, maf-5-some-pop,maf-5-all-pops 810 chr1 29536275 29536276 rs16838010 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 776.000000,4232.000000, 0.154952,0.845048, maf-5-some-pop 810 chr1 29540531 29540532 rs16838019 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3982.000000,1026.000000, 0.795128,0.204872, maf-5-some-pop 810 chr1 29559612 29559613 rs2503009 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3595.000000,1413.000000,1413.000000,3595.000000, 0.358926,0.141074,0.141074,0.358926, maf-5-some-pop 810 chr1 29562069 29562070 rs2503006 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1413.000000,3595.000000,3595.000000,1413.000000, 0.141074,0.358926,0.358926,0.141074, maf-5-some-pop,maf-5-all-pops 810 chr1 29571757 29571758 rs12057666 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop 810 chr1 29572553 29572554 rs2068388 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SHGC/AFFYMETRIX,SSMP,TISHKOFF, 2 A,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop 810 chr1 29573722 29573723 rs2819602 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1165.000000,3843.000000,3843.000000,1165.000000, 0.116314,0.383686,0.383686,0.116314, maf-5-some-pop 810 chr1 29574362 29574363 rs1565714 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1119.000000,3889.000000,3889.000000,1119.000000, 0.111721,0.388279,0.388279,0.111721, maf-5-some-pop,genotype-conflict 810 chr1 29575604 29575605 rs1032425 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 698.000000,4310.000000,4310.000000,698.000000, 0.069688,0.430312,0.430312,0.069688, maf-5-some-pop 810 chr1 29579156 29579157 rs7548622 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,genotype-conflict 810 chr1 29579825 29579826 rs2131556 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1548.000000,3460.000000,3460.000000,1548.000000, 0.154553,0.345447,0.345447,0.154553, maf-5-some-pop,maf-5-all-pops 810 chr1 29581380 29581381 rs12401971 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4189.000000,819.000000, 0.836462,0.163538, maf-5-some-pop 810 chr1 29581936 29581937 rs16838065 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP, 2 A,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop 810 chr1 29594562 29594563 rs7550930 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3348.000000,1660.000000, 0.668530,0.331470, maf-5-some-pop,maf-5-all-pops 810 chr1 29604748 29604749 rs34330061 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 3696.000000,1312.000000, 0.738019,0.261981, maf-5-some-pop 810 chr1 29604771 29604772 rs17262440 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop 810 chr1 29607278 29607279 rs4428852 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop 810 chr1 29618777 29618778 rs2073173 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2104.000000,2904.000000, 0.420128,0.579872, maf-5-some-pop,maf-5-all-pops 810 chr1 29620755 29620756 rs2319403 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2839.000000,2169.000000, 0.566893,0.433107, maf-5-some-pop,maf-5-all-pops,genotype-conflict 810 chr1 29621459 29621460 rs7518159 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2839.000000,2169.000000, 0.566893,0.433107, maf-5-some-pop,maf-5-all-pops,genotype-conflict 810 chr1 29621523 29621524 rs12083729 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 810 chr1 29621965 29621966 rs6671468 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1099.000000,3909.000000, 0.219449,0.780551, maf-5-some-pop,maf-5-all-pops 811 chr1 29627720 29627721 rs6670608 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3052.000000,1956.000000, 0.609425,0.390575, maf-5-some-pop,maf-5-all-pops 811 chr1 29627843 29627844 rs6670784 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3052.000000,1956.000000, 0.609425,0.390575, maf-5-some-pop,maf-5-all-pops 811 chr1 29630955 29630956 rs3737606 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3481.000000,1527.000000,1527.000000,3481.000000, 0.347544,0.152456,0.152456,0.347544, maf-5-some-pop,maf-5-all-pops 811 chr1 29631908 29631909 rs2235937 0 + A A A/G genomic single unknown 0 0 missense exact 1 26 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3323.000000,1685.000000, 0.663538,0.336462, maf-5-some-pop,maf-5-all-pops,genotype-conflict 811 chr1 29632399 29632400 rs2235936 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 932.000000,4076.000000, 0.186102,0.813898, maf-5-some-pop 811 chr1 29632599 29632600 rs2235938 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2237.000000,2771.000000, 0.446685,0.553315, maf-5-some-pop,maf-5-all-pops 811 chr1 29637031 29637032 rs12758747 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop,genotype-conflict 811 chr1 29643880 29643881 rs1997865 0 + T T A/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4739.000000,269.000000, 0.946286,0.053714, maf-5-some-pop,genotype-conflict 811 chr1 29644327 29644328 rs1045453 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,ABI,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop,maf-5-all-pops 811 chr1 29646126 29646127 rs2007350 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 G,T, 1803.000000,3205.000000, 0.360024,0.639976, maf-5-some-pop,genotype-conflict 811 chr1 29652674 29652675 rs1062921 0 + T T A/T genomic single unknown 0 0 untranslated-3 exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 616.000000,4392.000000, 0.123003,0.876997, maf-5-some-pop 811 chr1 29653835 29653836 rs9426418 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2666.000000,2342.000000, 0.532348,0.467652, maf-5-some-pop,maf-5-all-pops 811 chr1 29655655 29655656 rs12402313 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 1205.000000,3803.000000, 0.240615,0.759385, maf-5-some-pop,genotype-conflict 811 chr1 29660280 29660281 rs6666094 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2240.000000,2768.000000, 0.447284,0.552716, maf-5-some-pop,maf-5-all-pops 811 chr1 29662769 29662770 rs6687854 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2763.000000,2245.000000, 0.551717,0.448283, maf-5-some-pop,maf-5-all-pops 811 chr1 29669795 29669796 rs212311 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2768.000000,2240.000000, 0.552716,0.447284, maf-5-some-pop,maf-5-all-pops 811 chr1 29670072 29670073 rs16838142 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1323.000000,3685.000000, 0.264177,0.735823, maf-5-some-pop 811 chr1 29678360 29678361 rs873654 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2939.000000,2069.000000, 0.586861,0.413139, maf-5-some-pop 811 chr1 29678773 29678774 rs761430 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1399.000000,3609.000000, 0.279353,0.720647, maf-5-some-pop,genotype-conflict 811 chr1 29681059 29681060 rs11585813 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop 811 chr1 29682882 29682883 rs10799129 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 811 chr1 29684969 29684970 rs10915256 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,T, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 811 chr1 29685789 29685790 rs6426356 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2378.000000,2630.000000, 0.474840,0.525160, maf-5-some-pop,maf-5-all-pops 811 chr1 29693078 29693079 rs6426357 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops 811 chr1 29693259 29693260 rs10915258 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 811 chr1 29694740 29694741 rs6694460 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2570.000000,2438.000000, 0.513179,0.486821, maf-5-some-pop,maf-5-all-pops 811 chr1 29695230 29695231 rs1325280 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3298.000000,1710.000000,1710.000000,3298.000000, 0.329273,0.170727,0.170727,0.329273, maf-5-some-pop,maf-5-all-pops 811 chr1 29699115 29699116 rs6695838 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 811 chr1 29711270 29711271 rs6702066 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1925.000000,3083.000000, 0.384385,0.615615, maf-5-some-pop 811 chr1 29719474 29719475 rs212306 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2701.000000,2307.000000, 0.539337,0.460663, maf-5-some-pop,maf-5-all-pops,genotype-conflict 811 chr1 29744276 29744277 rs9426339 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop 811 chr1 29745601 29745602 rs10799133 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3126.000000,1882.000000, 0.624201,0.375799, maf-5-some-pop,maf-5-all-pops 811 chr1 29745932 29745933 rs9426438 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop 811 chr1 29747161 29747162 rs6686991 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop 811 chr1 29751582 29751583 rs912770 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1019.000000,3989.000000,3989.000000,1019.000000, 0.101737,0.398263,0.398263,0.101737, maf-5-some-pop,maf-5-all-pops 811 chr1 29751708 29751709 rs9426443 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 G,T, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop 812 chr1 29753448 29753449 rs11805994 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop 812 chr1 29753609 29753610 rs10915268 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 982.000000,4026.000000, 0.196086,0.803914, maf-5-some-pop,maf-5-all-pops 812 chr1 29754251 29754252 rs10915269 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29754384 29754385 rs10915270 0 + C C A/C genomic single unknown 0 0 unknown exact 1 MixedObserved 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1757.000000,3251.000000, 0.350839,0.649161, maf-5-some-pop,maf-5-all-pops 812 chr1 29754432 29754433 rs977497 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2104.000000,2904.000000,2904.000000,2104.000000, 0.210064,0.289936,0.289936,0.210064, maf-5-some-pop,maf-5-all-pops 812 chr1 29754509 29754510 rs10915271 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3950.000000,1058.000000, 0.788738,0.211262, maf-5-some-pop,maf-5-all-pops 812 chr1 29754707 29754708 rs10915272 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 981.000000,4027.000000, 0.195887,0.804113, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29755164 29755165 rs7520785 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1050.000000,3958.000000, 0.209665,0.790335, maf-5-some-pop 812 chr1 29755756 29755757 rs9426351 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3247.000000,1761.000000, 0.648363,0.351637, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29756065 29756066 rs1359465 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3134.000000,1874.000000,1874.000000,3134.000000, 0.312899,0.187101,0.187101,0.312899, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29757269 29757270 rs9426448 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,genotype-conflict 812 chr1 29758456 29758457 rs716325 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 706.000000,4302.000000,4302.000000,706.000000, 0.070487,0.429513,0.429513,0.070487, maf-5-some-pop,maf-5-all-pops 812 chr1 29760645 29760646 rs16838247 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 711.000000,4297.000000, 0.141973,0.858027, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29761147 29761148 rs16838255 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4406.000000,602.000000, 0.879792,0.120208, maf-5-some-pop 812 chr1 29761293 29761294 rs10915275 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 2837.000000,2171.000000, 0.566494,0.433506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29763064 29763065 rs4459076 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 812 chr1 29764425 29764426 rs11588554 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3725.000000,1283.000000, 0.743810,0.256190, maf-5-some-pop,maf-5-all-pops 812 chr1 29764799 29764800 rs2182111 0 - A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 812 chr1 29765601 29765602 rs9426449 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 812 chr1 29765643 29765644 rs4654342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4482.000000,526.000000, 0.894968,0.105032, maf-5-some-pop,genotype-conflict 812 chr1 29766055 29766056 rs9426450 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop 812 chr1 29766119 29766120 rs6685390 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 812 chr1 29766148 29766149 rs1408859 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2133.000000,2875.000000,2875.000000,2133.000000, 0.212959,0.287041,0.287041,0.212959, maf-5-some-pop 812 chr1 29776274 29776275 rs9426356 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2573.000000,2435.000000, 0.513778,0.486222, maf-5-some-pop,maf-5-all-pops 812 chr1 29778100 29778101 rs7514421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 966.000000,4042.000000, 0.192891,0.807109, maf-5-some-pop,genotype-conflict 812 chr1 29778112 29778113 rs7514423 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2575.000000,2433.000000, 0.514177,0.485823, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29782222 29782223 rs12049158 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1453.000000,3555.000000, 0.290136,0.709864, maf-5-some-pop,maf-5-all-pops 812 chr1 29784342 29784343 rs7526490 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3971.000000,1037.000000, 0.792931,0.207069, maf-5-some-pop 812 chr1 29789247 29789248 rs10915288 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2591.000000,2417.000000, 0.517372,0.482628, maf-5-some-pop,maf-5-all-pops 812 chr1 29789342 29789343 rs4654352 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29793204 29793205 rs927727 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 812 chr1 29794246 29794247 rs4654354 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4690.000000,318.000000, 0.936502,0.063498, maf-5-some-pop 812 chr1 29794278 29794279 rs4654355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2301.000000,2707.000000, 0.459465,0.540535, maf-5-some-pop,maf-5-all-pops 812 chr1 29795698 29795699 rs9426456 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 812 chr1 29795984 29795985 rs9426363 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4428.000000,580.000000, 0.884185,0.115815, maf-5-some-pop,genotype-conflict 812 chr1 29796644 29796645 rs9426458 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop,genotype-conflict 812 chr1 29799277 29799278 rs1581798 0 + C C C/T genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 652.000000,4356.000000, 0.130192,0.869808, maf-5-some-pop,genotype-conflict 812 chr1 29799385 29799386 rs9426368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 812 chr1 29803453 29803454 rs6701048 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop 812 chr1 29807637 29807638 rs6680855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 812 chr1 29807687 29807688 rs10915294 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop 812 chr1 29808087 29808088 rs4420061 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop 812 chr1 29810604 29810605 rs6657446 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 812 chr1 29814234 29814235 rs6679435 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop 812 chr1 29815644 29815645 rs4078312 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop 812 chr1 29822382 29822383 rs4654357 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3781.000000,1227.000000, 0.754992,0.245008, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29831518 29831519 rs6678182 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,G, 3812.000000,1196.000000, 0.761182,0.238818, maf-5-some-pop 812 chr1 29835382 29835383 rs9426277 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 728.000000,4280.000000, 0.145367,0.854633, maf-5-some-pop,maf-5-all-pops 812 chr1 29835787 29835788 rs9426278 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 4280.000000,728.000000, 0.854633,0.145367, maf-5-some-pop 812 chr1 29840321 29840322 rs9286959 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 812 chr1 29854674 29854675 rs12069708 0 + A A A/C genomic single unknown 0 0 unknown exact 1 MixedObserved 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 3313.000000,1695.000000, 0.661542,0.338458, maf-5-some-pop,maf-5-all-pops 812 chr1 29854739 29854740 rs12071830 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1695.000000,3313.000000, 0.338458,0.661542, maf-5-some-pop,maf-5-all-pops 812 chr1 29856843 29856844 rs10915172 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29859056 29859057 rs7547083 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1629.000000,3379.000000, 0.325280,0.674720, maf-5-some-pop,maf-5-all-pops 812 chr1 29859209 29859210 rs7537024 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2941.000000,2067.000000, 0.587260,0.412740, maf-5-some-pop,maf-5-all-pops 812 chr1 29859763 29859764 rs6426342 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1651.000000,3357.000000, 0.329673,0.670327, maf-5-some-pop,maf-5-all-pops 812 chr1 29864798 29864799 rs9426384 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 812 chr1 29865106 29865107 rs6426343 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3303.000000,1705.000000, 0.659545,0.340455, maf-5-some-pop,maf-5-all-pops 812 chr1 29868793 29868794 rs6422671 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 812 chr1 29869914 29869915 rs6605085 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,genotype-conflict 812 chr1 29870061 29870062 rs6605086 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 G,T, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop 812 chr1 29870379 29870380 rs7552197 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop,maf-5-all-pops 812 chr1 29870453 29870454 rs7418865 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3492.000000,1516.000000, 0.697284,0.302716, maf-5-some-pop,maf-5-all-pops,genotype-conflict 812 chr1 29870823 29870824 rs3934509 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop,maf-5-all-pops 814 chr1 30061851 30061852 rs1111382 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3208.000000,1800.000000,1800.000000,3208.000000, 0.320288,0.179712,0.179712,0.320288, maf-5-some-pop,maf-5-all-pops 814 chr1 30062972 30062973 rs10914282 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30072548 30072549 rs4949306 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1727.000000,3281.000000,3281.000000,1727.000000, 0.172424,0.327576,0.327576,0.172424, maf-5-some-pop,maf-5-all-pops 814 chr1 30073827 30073828 rs9729975 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop 814 chr1 30078750 30078751 rs9725360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 814 chr1 30078800 30078801 rs4949293 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1014.000000,3994.000000,3994.000000,1014.000000, 0.101238,0.398762,0.398762,0.101238, maf-5-some-pop,maf-5-all-pops 814 chr1 30094323 30094324 rs16832700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,genotype-conflict 814 chr1 30097011 30097012 rs271322 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 169.000000,4839.000000,4839.000000,169.000000, 0.016873,0.483127,0.483127,0.016873, maf-5-some-pop,genotype-conflict 814 chr1 30097206 30097207 rs1001915 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3952.000000,1056.000000,1056.000000,3952.000000, 0.394569,0.105431,0.105431,0.394569, maf-5-some-pop,genotype-conflict 814 chr1 30097293 30097294 rs9283399 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2236.000000,2772.000000,2772.000000,2236.000000, 0.223243,0.276757,0.276757,0.223243, maf-5-some-pop,maf-5-all-pops 814 chr1 30098509 30098510 rs271321 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1420.000000,3588.000000,3588.000000,1420.000000, 0.141773,0.358227,0.358227,0.141773, maf-5-some-pop 814 chr1 30100060 30100061 rs2095522 0 - T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30103671 30103672 rs1866970 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1588.000000,3420.000000,3420.000000,1588.000000, 0.158546,0.341454,0.341454,0.158546, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30104143 30104144 rs271313 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 771.000000,4237.000000,4237.000000,771.000000, 0.076977,0.423023,0.423023,0.076977, maf-5-some-pop 814 chr1 30107157 30107158 rs271335 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 180.000000,4828.000000,4828.000000,180.000000, 0.017971,0.482029,0.482029,0.017971, maf-5-some-pop,maf-5-all-pops 814 chr1 30109481 30109482 rs502545 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3058.000000,1950.000000,1950.000000,3058.000000, 0.305312,0.194688,0.194688,0.305312, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30111857 30111858 rs9442466 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4108.000000,900.000000, 0.820288,0.179712, maf-5-some-pop 814 chr1 30113566 30113567 rs187953 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4821.000000,187.000000,187.000000,4821.000000, 0.481330,0.018670,0.018670,0.481330, maf-5-some-pop 814 chr1 30114163 30114164 rs9439752 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4009.000000,999.000000,999.000000,4009.000000, 0.400260,0.099740,0.099740,0.400260, maf-5-some-pop,genotype-conflict 814 chr1 30115819 30115820 rs271328 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1533.000000,3475.000000,3475.000000,1533.000000, 0.153055,0.346945,0.346945,0.153055, maf-5-some-pop,maf-5-all-pops 814 chr1 30117516 30117517 rs692787 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 950.000000,4058.000000,4058.000000,950.000000, 0.094848,0.405152,0.405152,0.094848, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30120946 30120947 rs1372372 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 988.000000,4020.000000,4020.000000,988.000000, 0.098642,0.401358,0.401358,0.098642, maf-5-some-pop 814 chr1 30121584 30121585 rs9442461 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,G, 837.000000,4171.000000, 0.167133,0.832867, maf-5-some-pop,genotype-conflict 814 chr1 30121602 30121603 rs271379 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 111.000000,4897.000000,4897.000000,111.000000, 0.011082,0.488918,0.488918,0.011082, maf-5-some-pop 814 chr1 30122033 30122034 rs16832727 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop,genotype-conflict 814 chr1 30122156 30122157 rs1036782 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4804.000000,204.000000,204.000000,4804.000000, 0.479633,0.020367,0.020367,0.479633, maf-5-some-pop 814 chr1 30123114 30123115 rs9659705 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop 814 chr1 30123152 30123153 rs271375 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3995.000000,1013.000000,1013.000000,3995.000000, 0.398862,0.101138,0.101138,0.398862, maf-5-some-pop,maf-5-all-pops 814 chr1 30124775 30124776 rs271374 0 - A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 814 chr1 30126978 30126979 rs271372 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 926.000000,4082.000000,4082.000000,926.000000, 0.092452,0.407548,0.407548,0.092452, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30134603 30134604 rs187954 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2557.000000,2451.000000,2451.000000,2557.000000, 0.255292,0.244708,0.244708,0.255292, maf-5-some-pop,maf-5-all-pops,genotype-conflict 814 chr1 30134670 30134671 rs175250 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 888.000000,4120.000000,4120.000000,888.000000, 0.088658,0.411342,0.411342,0.088658, maf-5-some-pop,maf-5-all-pops 814 chr1 30134960 30134961 rs11589926 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 925.000000,4083.000000, 0.184704,0.815296, maf-5-some-pop 814 chr1 30135006 30135007 rs12023207 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1246.000000,3762.000000, 0.248802,0.751198, maf-5-some-pop,genotype-conflict 814 chr1 30136720 30136721 rs271364 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3971.000000,1037.000000,1037.000000,3971.000000, 0.396466,0.103534,0.103534,0.396466, maf-5-some-pop,maf-5-all-pops 814 chr1 30137054 30137055 rs271363 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3699.000000,1309.000000,1309.000000,3699.000000, 0.369309,0.130691,0.130691,0.369309, maf-5-some-pop,maf-5-all-pops 814 chr1 30138731 30138732 rs1596105 0 - C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 814 chr1 30144299 30144300 rs2889445 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3762.000000,1246.000000,1246.000000,3762.000000, 0.375599,0.124401,0.124401,0.375599, maf-5-some-pop 814 chr1 30144629 30144630 rs11579523 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 A,G, 900.000000,4108.000000, 0.179712,0.820288, maf-5-some-pop 815 chr1 30146829 30146830 rs1572353 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3576.000000,1432.000000,1432.000000,3576.000000, 0.357029,0.142971,0.142971,0.357029, maf-5-some-pop,maf-5-all-pops 815 chr1 30147238 30147239 rs12037860 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3763.000000,1245.000000, 0.751398,0.248602, maf-5-some-pop 815 chr1 30147599 30147600 rs10915116 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4681.000000,327.000000, 0.934704,0.065296, maf-5-some-pop 815 chr1 30148453 30148454 rs10915121 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3782.000000,1226.000000, 0.755192,0.244808, maf-5-some-pop,genotype-conflict 815 chr1 30148651 30148652 rs166604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop 815 chr1 30149248 30149249 rs9661274 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop,genotype-conflict 815 chr1 30149565 30149566 rs520527 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1008.000000,4000.000000,4000.000000,1008.000000, 0.100639,0.399361,0.399361,0.100639, maf-5-some-pop,maf-5-all-pops 815 chr1 30151775 30151776 rs271353 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 1583.000000,3425.000000,3425.000000,1583.000000, 0.158047,0.341953,0.341953,0.158047, maf-5-some-pop,maf-5-all-pops 815 chr1 30152119 30152120 rs271351 0 - G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 576.000000,4432.000000,4432.000000,576.000000, 0.057508,0.442492,0.442492,0.057508, maf-5-some-pop 815 chr1 30152993 30152994 rs271350 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2175.000000,2833.000000,2833.000000,2175.000000, 0.217153,0.282847,0.282847,0.217153, maf-5-some-pop,maf-5-all-pops 815 chr1 30156974 30156975 rs271344 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1571.000000,3437.000000,3437.000000,1571.000000, 0.156849,0.343151,0.343151,0.156849, maf-5-some-pop,maf-5-all-pops 815 chr1 30157558 30157559 rs387232 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2821.000000,2187.000000,2187.000000,2821.000000, 0.281649,0.218351,0.218351,0.281649, maf-5-some-pop,maf-5-all-pops,genotype-conflict 815 chr1 30158672 30158673 rs12140442 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,genotype-conflict 815 chr1 30164264 30164265 rs10798798 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 815 chr1 30169272 30169273 rs9726930 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1542.000000,3466.000000, 0.307907,0.692093, maf-5-some-pop 815 chr1 30169446 30169447 rs11808436 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop 815 chr1 30174609 30174610 rs11588257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 815 chr1 30174661 30174662 rs4949220 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3348.000000,1660.000000,1660.000000,3348.000000, 0.334265,0.165735,0.165735,0.334265, maf-5-some-pop,maf-5-all-pops 815 chr1 30175277 30175278 rs10914188 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop 815 chr1 30175591 30175592 rs12141268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop 815 chr1 30183013 30183014 rs894220 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2108.000000,2900.000000,2900.000000,2108.000000, 0.210463,0.289537,0.289537,0.210463, maf-5-some-pop,maf-5-all-pops 815 chr1 30184425 30184426 rs4259710 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2377.000000,2631.000000,2631.000000,2377.000000, 0.237320,0.262680,0.262680,0.237320, maf-5-some-pop,maf-5-all-pops 815 chr1 30185087 30185088 rs894216 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2755.000000,2253.000000,2253.000000,2755.000000, 0.275060,0.224940,0.224940,0.275060, maf-5-some-pop,maf-5-all-pops 815 chr1 30185313 30185314 rs6673169 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 815 chr1 30185661 30185662 rs1866967 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2441.000000,2567.000000,2567.000000,2441.000000, 0.243710,0.256290,0.256290,0.243710, maf-5-some-pop,maf-5-all-pops,microattr-tpa 815 chr1 30186584 30186585 rs6697750 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 442.000000,4566.000000, 0.088259,0.911741, maf-5-some-pop 815 chr1 30186955 30186956 rs4949268 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3395.000000,1613.000000,1613.000000,3395.000000, 0.338958,0.161042,0.161042,0.338958, maf-5-some-pop,maf-5-all-pops 815 chr1 30187108 30187109 rs4949265 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 656.000000,4352.000000,4352.000000,656.000000, 0.065495,0.434505,0.434505,0.065495, maf-5-some-pop 815 chr1 30187373 30187374 rs11811396 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 290.000000,4718.000000, 0.057907,0.942093, maf-5-some-pop 815 chr1 30190546 30190547 rs12118024 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop 815 chr1 30191184 30191185 rs7520938 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2485.000000,2523.000000, 0.496206,0.503794, maf-5-some-pop,maf-5-all-pops 815 chr1 30192751 30192752 rs16865955 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop 815 chr1 30194405 30194406 rs11576157 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1519.000000,3489.000000, 0.303315,0.696685, maf-5-some-pop,maf-5-all-pops 815 chr1 30203686 30203687 rs16832828 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop 815 chr1 30203910 30203911 rs9442464 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4236.000000,772.000000, 0.845847,0.154153, maf-5-some-pop,maf-5-all-pops 815 chr1 30203967 30203968 rs6658349 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 3643.000000,1365.000000, 0.727436,0.272564, maf-5-some-pop,maf-5-all-pops,genotype-conflict 815 chr1 30204210 30204211 rs16832830 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop,genotype-conflict 815 chr1 30204851 30204852 rs16832833 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 386.000000,4622.000000, 0.077077,0.922923, maf-5-some-pop 815 chr1 30204942 30204943 rs12125419 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 563.000000,4445.000000, 0.112420,0.887580, maf-5-some-pop,genotype-conflict 815 chr1 30204991 30204992 rs12030036 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3634.000000,1374.000000, 0.725639,0.274361, maf-5-some-pop,maf-5-all-pops 815 chr1 30206790 30206791 rs11804052 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,genotype-conflict 815 chr1 30207858 30207859 rs1441841 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1960.000000,3048.000000,3048.000000,1960.000000, 0.195687,0.304313,0.304313,0.195687, maf-5-some-pop,maf-5-all-pops,genotype-conflict 815 chr1 30208373 30208374 rs16832840 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 815 chr1 30208394 30208395 rs1000902 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop 815 chr1 30210609 30210610 rs969104 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2743.000000,2265.000000,2265.000000,2743.000000, 0.273862,0.226138,0.226138,0.273862, maf-5-some-pop,maf-5-all-pops 815 chr1 30212564 30212565 rs2377059 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1322.000000,3686.000000,3686.000000,1322.000000, 0.131989,0.368011,0.368011,0.131989, maf-5-some-pop,maf-5-all-pops 815 chr1 30213636 30213637 rs1036779 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 294.000000,4714.000000,4714.000000,294.000000, 0.029353,0.470647,0.470647,0.029353, maf-5-some-pop 815 chr1 30213675 30213676 rs7411511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1584.000000,3424.000000, 0.316294,0.683706, maf-5-some-pop,maf-5-all-pops 815 chr1 30213770 30213771 rs11582710 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1427.000000,3581.000000, 0.284944,0.715056, maf-5-some-pop,maf-5-all-pops 815 chr1 30215071 30215072 rs11584521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2147.000000,2861.000000, 0.428714,0.571286, maf-5-some-pop,maf-5-all-pops 815 chr1 30215146 30215147 rs16832857 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 815 chr1 30215503 30215504 rs10914281 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,genotype-conflict 815 chr1 30215679 30215680 rs995197 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2105.000000,2903.000000,2903.000000,2105.000000, 0.210164,0.289836,0.289836,0.210164, maf-5-some-pop,maf-5-all-pops,genotype-conflict 815 chr1 30218635 30218636 rs1372379 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1631.000000,3377.000000,3377.000000,1631.000000, 0.162839,0.337161,0.337161,0.162839, maf-5-some-pop,maf-5-all-pops 815 chr1 30219423 30219424 rs1348199 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3400.000000,1608.000000,1608.000000,3400.000000, 0.339457,0.160543,0.160543,0.339457, maf-5-some-pop,maf-5-all-pops 815 chr1 30221060 30221061 rs10914307 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 815 chr1 30221764 30221765 rs10914309 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop 815 chr1 30221889 30221890 rs9659041 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,WI_SSAHASNP, 2 C,G, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 815 chr1 30222136 30222137 rs735207 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1623.000000,3385.000000,3385.000000,1623.000000, 0.162041,0.337959,0.337959,0.162041, maf-5-some-pop,maf-5-all-pops 815 chr1 30222150 30222151 rs9726006 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 815 chr1 30222296 30222297 rs920601 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3074.000000,1934.000000,1934.000000,3074.000000, 0.306909,0.193091,0.193091,0.306909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 815 chr1 30223122 30223123 rs10914323 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1339.000000,3669.000000, 0.267372,0.732628, maf-5-some-pop,maf-5-all-pops,genotype-conflict 815 chr1 30225124 30225125 rs17262734 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop,maf-5-all-pops 815 chr1 30225136 30225137 rs12566608 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4049.000000,959.000000, 0.808506,0.191494, maf-5-some-pop 815 chr1 30230778 30230779 rs9728826 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 815 chr1 30231803 30231804 rs12736999 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop,maf-5-all-pops 815 chr1 30234030 30234031 rs10914351 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4395.000000,613.000000, 0.877596,0.122404, maf-5-some-pop 815 chr1 30234840 30234841 rs17341197 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 720.000000,4288.000000, 0.143770,0.856230, maf-5-some-pop,maf-5-all-pops 815 chr1 30235081 30235082 rs11586793 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 815 chr1 30240137 30240138 rs9662056 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop,maf-5-all-pops 815 chr1 30245412 30245413 rs12145316 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,microattr-tpa 815 chr1 30246261 30246262 rs2121954 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1486.000000,3522.000000,3522.000000,1486.000000, 0.148363,0.351637,0.351637,0.148363, maf-5-some-pop 815 chr1 30250829 30250830 rs12060452 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 369.000000,4639.000000, 0.073682,0.926318, maf-5-some-pop,genotype-conflict 815 chr1 30252103 30252104 rs12058382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4682.000000,326.000000, 0.934904,0.065096, maf-5-some-pop 815 chr1 30254346 30254347 rs7517071 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 815 chr1 30259724 30259725 rs1868302 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 418.000000,4590.000000,4590.000000,418.000000, 0.041733,0.458267,0.458267,0.041733, maf-5-some-pop 815 chr1 30261279 30261280 rs2376727 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1818.000000,3190.000000,3190.000000,1818.000000, 0.181510,0.318490,0.318490,0.181510, maf-5-some-pop,maf-5-all-pops 815 chr1 30261882 30261883 rs4949453 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop 815 chr1 30262311 30262312 rs6425878 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3188.000000,1820.000000, 0.636581,0.363419, maf-5-some-pop 815 chr1 30264882 30264883 rs12117184 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 551.000000,4457.000000, 0.110024,0.889976, maf-5-some-pop,maf-5-all-pops 815 chr1 30265651 30265652 rs6691847 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4138.000000,870.000000, 0.826278,0.173722, maf-5-some-pop,maf-5-all-pops,microattr-tpa 815 chr1 30271899 30271900 rs4949468 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3131.000000,1877.000000, 0.625200,0.374800, maf-5-some-pop,maf-5-all-pops 815 chr1 30275119 30275120 rs16832919 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 10 1000GENOMES,AFFY,BGI,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 C,G,T, 4656.000000,324.000000,28.000000, 0.929712,0.064696,0.005591, maf-5-some-pop 815 chr1 30275486 30275487 rs12564644 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop 816 chr1 30278192 30278193 rs1868305 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3276.000000,1732.000000,1732.000000,3276.000000, 0.327077,0.172923,0.172923,0.327077, maf-5-some-pop,maf-5-all-pops 816 chr1 30278549 30278550 rs10914475 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30285529 30285530 rs10798894 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 732.000000,4276.000000, 0.146166,0.853834, maf-5-some-pop 816 chr1 30285847 30285848 rs4949485 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1369.000000,3639.000000, 0.273363,0.726637, maf-5-some-pop,maf-5-all-pops 816 chr1 30285914 30285915 rs12077521 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1269.000000,3739.000000, 0.253395,0.746605, maf-5-some-pop 816 chr1 30288206 30288207 rs2166884 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 836.000000,4172.000000,4172.000000,836.000000, 0.083466,0.416534,0.416534,0.083466, maf-5-some-pop 816 chr1 30301307 30301308 rs12748731 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4136.000000,872.000000, 0.825879,0.174121, maf-5-some-pop 816 chr1 30301326 30301327 rs12759686 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop 816 chr1 30301907 30301908 rs12042943 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1408.000000,3600.000000, 0.281150,0.718850, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30304089 30304090 rs17341203 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1231.000000,3777.000000, 0.245807,0.754193, maf-5-some-pop 816 chr1 30308743 30308744 rs749663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop,genotype-conflict 816 chr1 30310876 30310877 rs895785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4257.000000,751.000000, 0.850040,0.149960, maf-5-some-pop 816 chr1 30318155 30318156 rs12145156 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop 816 chr1 30318752 30318753 rs10798897 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2488.000000,2520.000000, 0.496805,0.503195, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30319568 30319569 rs12563151 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 779.000000,4229.000000, 0.155551,0.844449, maf-5-some-pop 816 chr1 30320042 30320043 rs2377161 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2733.000000,2275.000000,2275.000000,2733.000000, 0.272863,0.227137,0.227137,0.272863, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30332234 30332235 rs4949505 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop,maf-5-all-pops 816 chr1 30333768 30333769 rs7538432 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop 816 chr1 30337046 30337047 rs4949225 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop 816 chr1 30337203 30337204 rs4949506 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 816 chr1 30338071 30338072 rs4949507 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,maf-5-all-pops 816 chr1 30341796 30341797 rs12032770 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,genotype-conflict 816 chr1 30342349 30342350 rs7547546 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2000.000000,3008.000000, 0.399361,0.600639, maf-5-some-pop,maf-5-all-pops 816 chr1 30346740 30346741 rs7513406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3107.000000,1901.000000, 0.620407,0.379593, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30347455 30347456 rs12037930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3475.000000,1533.000000, 0.693890,0.306110, maf-5-some-pop 816 chr1 30347577 30347578 rs10798906 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4577.000000,431.000000, 0.913938,0.086062, maf-5-some-pop 816 chr1 30349203 30349204 rs1448338 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4058.000000,950.000000,950.000000,4058.000000, 0.405152,0.094848,0.094848,0.405152, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30349275 30349276 rs1448337 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 790.000000,4218.000000,4218.000000,790.000000, 0.078874,0.421126,0.421126,0.078874, maf-5-some-pop 816 chr1 30353088 30353089 rs7552039 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 597.000000,4411.000000, 0.119209,0.880791, maf-5-some-pop 816 chr1 30353686 30353687 rs10458370 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2932.000000,2076.000000, 0.585463,0.414537, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30356187 30356188 rs895787 0 - T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 816 chr1 30356390 30356391 rs729851 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 929.000000,4079.000000, 0.185503,0.814497, maf-5-some-pop,genotype-conflict 816 chr1 30358650 30358651 rs6670441 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30359164 30359165 rs2197783 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 625.000000,4383.000000,4383.000000,625.000000, 0.062400,0.437600,0.437600,0.062400, maf-5-some-pop,genotype-conflict 816 chr1 30359559 30359560 rs10914579 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2825.000000,2183.000000, 0.564097,0.435903, maf-5-some-pop,maf-5-all-pops 816 chr1 30359861 30359862 rs1001709 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1163.000000,3845.000000,3845.000000,1163.000000, 0.116114,0.383886,0.383886,0.116114, maf-5-some-pop,maf-5-all-pops 816 chr1 30361660 30361661 rs11584587 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,genotype-conflict 816 chr1 30361716 30361717 rs1597171 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4334.000000,674.000000,674.000000,4334.000000, 0.432708,0.067292,0.067292,0.432708, maf-5-some-pop,genotype-conflict 816 chr1 30365234 30365235 rs7537562 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop,maf-5-all-pops 816 chr1 30365856 30365857 rs7540340 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1917.000000,3091.000000, 0.382788,0.617212, maf-5-some-pop,maf-5-all-pops 816 chr1 30365946 30365947 rs12132811 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP, 2 G,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 816 chr1 30366340 30366341 rs10798911 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1232.000000,3776.000000, 0.246006,0.753994, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30367469 30367470 rs4949511 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop 816 chr1 30367644 30367645 rs1550970 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCMHGSC_JDW,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 146.000000,4862.000000,4862.000000,146.000000, 0.014577,0.485423,0.485423,0.014577, maf-5-some-pop,genotype-conflict 816 chr1 30368062 30368063 rs4949512 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30369568 30369569 rs895793 0 - C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 816 chr1 30369658 30369659 rs10753261 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2878.000000,2130.000000, 0.574681,0.425319, maf-5-some-pop,maf-5-all-pops 816 chr1 30369814 30369815 rs895791 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 397.000000,4611.000000,4611.000000,397.000000, 0.039637,0.460363,0.460363,0.039637, maf-5-some-pop 816 chr1 30370064 30370065 rs6673004 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop 816 chr1 30370296 30370297 rs10753263 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30370314 30370315 rs10753264 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop,maf-5-all-pops 816 chr1 30370378 30370379 rs10798912 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3580.000000,1428.000000, 0.714856,0.285144, maf-5-some-pop,maf-5-all-pops 816 chr1 30371099 30371100 rs10798913 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop 816 chr1 30376691 30376692 rs4949516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2162.000000,2846.000000, 0.431709,0.568291, maf-5-some-pop,maf-5-all-pops 816 chr1 30376727 30376728 rs6662560 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2845.000000,2163.000000, 0.568091,0.431909, maf-5-some-pop,maf-5-all-pops 816 chr1 30380135 30380136 rs873894 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1719.000000,3289.000000, 0.343251,0.656749, maf-5-some-pop,maf-5-all-pops 816 chr1 30381488 30381489 rs10914615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1647.000000,3361.000000, 0.328874,0.671126, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30382006 30382007 rs2084436 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1267.000000,3741.000000,3741.000000,1267.000000, 0.126498,0.373502,0.373502,0.126498, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30384610 30384611 rs1349089 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 116.000000,4892.000000,4892.000000,116.000000, 0.011581,0.488419,0.488419,0.011581, maf-5-some-pop 816 chr1 30387702 30387703 rs41421044 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL, 2 A,G, 7.000000,5001.000000, 0.001398,0.998602, 816 chr1 30392969 30392970 rs12401689 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop,genotype-conflict 816 chr1 30393789 30393790 rs268955 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3754.000000,1254.000000,1254.000000,3754.000000, 0.374800,0.125200,0.125200,0.374800, maf-5-some-pop 816 chr1 30394089 30394090 rs12063790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 1338.000000,3670.000000, 0.267173,0.732827, maf-5-some-pop,maf-5-all-pops 816 chr1 30399108 30399109 rs10798921 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3863.000000,1145.000000, 0.771366,0.228634, maf-5-some-pop 816 chr1 30399153 30399154 rs198271 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1555.000000,3453.000000,3453.000000,1555.000000, 0.155252,0.344748,0.344748,0.155252, maf-5-some-pop,maf-5-all-pops 816 chr1 30399205 30399206 rs12071249 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,genotype-conflict 816 chr1 30399476 30399477 rs155636 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3608.000000,1400.000000,1400.000000,3608.000000, 0.360224,0.139776,0.139776,0.360224, maf-5-some-pop,maf-5-all-pops 816 chr1 30400300 30400301 rs1010560 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4135.000000,873.000000,873.000000,4135.000000, 0.412839,0.087161,0.087161,0.412839, maf-5-some-pop,genotype-conflict 816 chr1 30401562 30401563 rs12074244 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1941.000000,3067.000000, 0.387580,0.612420, maf-5-some-pop,genotype-conflict 816 chr1 30402967 30402968 rs268958 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3737.000000,1271.000000,1271.000000,3737.000000, 0.373103,0.126897,0.126897,0.373103, maf-5-some-pop 816 chr1 30403469 30403470 rs4478859 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop,maf-5-all-pops,genotype-conflict 816 chr1 30405166 30405167 rs6655990 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2526.000000,2482.000000, 0.504393,0.495607, maf-5-some-pop,maf-5-all-pops 817 chr1 30410501 30410502 rs4949232 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,C, 4630.000000,378.000000, 0.924521,0.075479, maf-5-some-pop,genotype-conflict 817 chr1 30414050 30414051 rs4245639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2528.000000,2480.000000, 0.504792,0.495208, maf-5-some-pop,maf-5-all-pops 817 chr1 30414181 30414182 rs16833076 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1040.000000,3968.000000, 0.207668,0.792332, maf-5-some-pop,maf-5-all-pops 817 chr1 30415025 30415026 rs1498243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop 817 chr1 30415773 30415774 rs1354366 0 - G G C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 817 chr1 30417559 30417560 rs10798928 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1481.000000,3527.000000, 0.295727,0.704273, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30419369 30419370 rs11583644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops 817 chr1 30419455 30419456 rs11583665 0 + G G G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2520.000000,2488.000000, 0.503195,0.496805, maf-5-some-pop,maf-5-all-pops 817 chr1 30420738 30420739 rs4949522 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1248.000000,3760.000000, 0.249201,0.750799, maf-5-some-pop,genotype-conflict 817 chr1 30420872 30420873 rs4949237 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3630.000000,1378.000000, 0.724840,0.275160, maf-5-some-pop,maf-5-all-pops 817 chr1 30422595 30422596 rs4949238 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4037.000000,971.000000, 0.806110,0.193890, maf-5-some-pop,genotype-conflict 817 chr1 30423828 30423829 rs10914667 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3649.000000,1359.000000, 0.728634,0.271366, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30427305 30427306 rs16833097 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 817 chr1 30429310 30429311 rs417372 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 4608.000000,400.000000, 0.920128,0.079872, maf-5-some-pop 817 chr1 30430365 30430366 rs267700 0 + T T G/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3091.000000,1917.000000, 0.617212,0.382788, maf-5-some-pop,genotype-conflict 817 chr1 30431559 30431560 rs1009080 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2337.000000,2671.000000,2671.000000,2337.000000, 0.233327,0.266673,0.266673,0.233327, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 817 chr1 30432218 30432219 rs4949526 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2394.000000,2614.000000, 0.478035,0.521965, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 817 chr1 30435683 30435684 rs11810708 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 817 chr1 30437007 30437008 rs267704 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 4 A,C,G,T, 52.000000,4956.000000,4956.000000,52.000000, 0.005192,0.494808,0.494808,0.005192, maf-5-some-pop 817 chr1 30439759 30439760 rs12401298 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,genotype-conflict 817 chr1 30439912 30439913 rs169150 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 370.000000,4638.000000,4638.000000,370.000000, 0.036941,0.463059,0.463059,0.036941, maf-5-some-pop,genotype-conflict 817 chr1 30439987 30439988 rs368407 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1869.000000,3139.000000,3139.000000,1869.000000, 0.186601,0.313399,0.313399,0.186601, maf-5-some-pop,maf-5-all-pops 817 chr1 30441726 30441727 rs6696009 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 G,T, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop 817 chr1 30444978 30444979 rs17263039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 817 chr1 30445049 30445050 rs10753284 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2509.000000,2499.000000, 0.500998,0.499002, maf-5-some-pop,maf-5-all-pops 817 chr1 30445630 30445631 rs267708 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1862.000000,3146.000000,3146.000000,1862.000000, 0.185903,0.314097,0.314097,0.185903, maf-5-some-pop,maf-5-all-pops 817 chr1 30448216 30448217 rs12025200 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2510.000000,2498.000000, 0.501198,0.498802, maf-5-some-pop,maf-5-all-pops 817 chr1 30461360 30461361 rs267679 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 817 chr1 30461937 30461938 rs267680 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop 817 chr1 30464419 30464420 rs10798973 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2549.000000,2459.000000, 0.508986,0.491014, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30465386 30465387 rs10798975 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 817 chr1 30465851 30465852 rs267689 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 817 chr1 30476204 30476205 rs381012 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 447.000000,4561.000000,4561.000000,447.000000, 0.044629,0.455371,0.455371,0.044629, maf-5-some-pop 817 chr1 30477108 30477109 rs10798985 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2538.000000,2470.000000, 0.506789,0.493211, maf-5-some-pop,maf-5-all-pops 817 chr1 30478088 30478089 rs11580314 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop 817 chr1 30478105 30478106 rs16833145 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop 817 chr1 30478546 30478547 rs905580 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop 817 chr1 30478719 30478720 rs7554079 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 817 chr1 30478772 30478773 rs427552 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2538.000000,2470.000000,2470.000000,2538.000000, 0.253395,0.246605,0.246605,0.253395, maf-5-some-pop,maf-5-all-pops 817 chr1 30478995 30478996 rs452132 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1940.000000,3068.000000,3068.000000,1940.000000, 0.193690,0.306310,0.306310,0.193690, maf-5-some-pop,maf-5-all-pops,microattr-tpa 817 chr1 30485509 30485510 rs373316 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1910.000000,3098.000000, 0.381390,0.618610, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30485740 30485741 rs404170 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop 817 chr1 30486127 30486128 rs374904 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 581.000000,4427.000000,4427.000000,581.000000, 0.058007,0.441993,0.441993,0.058007, maf-5-some-pop,genotype-conflict 817 chr1 30487393 30487394 rs4949242 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2974.000000,2034.000000, 0.593850,0.406150, maf-5-some-pop,maf-5-all-pops 817 chr1 30488560 30488561 rs372940 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1997.000000,3011.000000,3011.000000,1997.000000, 0.199381,0.300619,0.300619,0.199381, maf-5-some-pop,maf-5-all-pops 817 chr1 30490593 30490594 rs437063 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1912.000000,3096.000000,3096.000000,1912.000000, 0.190895,0.309105,0.309105,0.190895, maf-5-some-pop,maf-5-all-pops 817 chr1 30490712 30490713 rs366842 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1992.000000,3016.000000,3016.000000,1992.000000, 0.198882,0.301118,0.301118,0.198882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30490742 30490743 rs414541 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1992.000000,3016.000000,3016.000000,1992.000000, 0.198882,0.301118,0.301118,0.198882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30490923 30490924 rs434044 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 261.000000,4747.000000,4747.000000,261.000000, 0.026058,0.473942,0.473942,0.026058, maf-5-some-pop 817 chr1 30491027 30491028 rs388520 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1993.000000,3015.000000,3015.000000,1993.000000, 0.198982,0.301018,0.301018,0.198982, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30499407 30499408 rs267719 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1909.000000,3099.000000,3099.000000,1909.000000, 0.190595,0.309405,0.309405,0.190595, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30501461 30501462 rs10914832 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1848.000000,3160.000000, 0.369010,0.630990, maf-5-some-pop,maf-5-all-pops 817 chr1 30507823 30507824 rs16833169 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 817 chr1 30516527 30516528 rs12142520 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 644.000000,4364.000000, 0.128594,0.871406, maf-5-some-pop,maf-5-all-pops 817 chr1 30516775 30516776 rs10753300 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2308.000000,2700.000000, 0.460863,0.539137, maf-5-some-pop,maf-5-all-pops 817 chr1 30520890 30520891 rs972867 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1629.000000,3379.000000,3379.000000,1629.000000, 0.162640,0.337360,0.337360,0.162640, maf-5-some-pop,maf-5-all-pops 817 chr1 30521570 30521571 rs370325 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1365.000000,3643.000000,3643.000000,1365.000000, 0.136282,0.363718,0.363718,0.136282, maf-5-some-pop 817 chr1 30522299 30522300 rs1391489 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1355.000000,3653.000000,3653.000000,1355.000000, 0.135284,0.364716,0.364716,0.135284, maf-5-some-pop,maf-5-all-pops 817 chr1 30523068 30523069 rs17341662 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 2010.000000,2998.000000, 0.401358,0.598642, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30523406 30523407 rs12727851 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2877.000000,2131.000000, 0.574481,0.425519, maf-5-some-pop,maf-5-all-pops 817 chr1 30523922 30523923 rs1503772 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2001.000000,3007.000000,3007.000000,2001.000000, 0.199780,0.300220,0.300220,0.199780, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30527552 30527553 rs12027950 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3210.000000,1798.000000, 0.640974,0.359026, maf-5-some-pop,maf-5-all-pops 817 chr1 30529133 30529134 rs422481 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1616.000000,3392.000000,3392.000000,1616.000000, 0.161342,0.338658,0.338658,0.161342, maf-5-some-pop,maf-5-all-pops 817 chr1 30529288 30529289 rs11580589 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop,microattr-tpa,genotype-conflict 817 chr1 30529445 30529446 rs11580622 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,C, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 817 chr1 30529470 30529471 rs421255 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3208.000000,1800.000000,1800.000000,3208.000000, 0.320288,0.179712,0.179712,0.320288, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30529657 30529658 rs1846217 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3255.000000,1753.000000,1753.000000,3255.000000, 0.324980,0.175020,0.175020,0.324980, maf-5-some-pop,maf-5-all-pops 817 chr1 30530416 30530417 rs438226 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop,genotype-conflict 817 chr1 30530884 30530885 rs391479 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3934.000000,1074.000000, 0.785543,0.214457, maf-5-some-pop,genotype-conflict 817 chr1 30530912 30530913 rs408953 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1076.000000,3932.000000, 0.214856,0.785144, maf-5-some-pop,genotype-conflict 817 chr1 30531038 30531039 rs433112 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1074.000000,3934.000000,3934.000000,1074.000000, 0.107228,0.392772,0.392772,0.107228, maf-5-some-pop 817 chr1 30532589 30532590 rs441380 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 552.000000,4456.000000,4456.000000,552.000000, 0.055112,0.444888,0.444888,0.055112, maf-5-some-pop,genotype-conflict 817 chr1 30532737 30532738 rs391725 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop 817 chr1 30532848 30532849 rs419527 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1054.000000,3954.000000,3954.000000,1054.000000, 0.105232,0.394768,0.394768,0.105232, maf-5-some-pop 817 chr1 30536710 30536711 rs746758 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2993.000000,2015.000000, 0.597644,0.402356, maf-5-some-pop,maf-5-all-pops,genotype-conflict 817 chr1 30537231 30537232 rs867720 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3858.000000,1150.000000,1150.000000,3858.000000, 0.385184,0.114816,0.114816,0.385184, maf-5-some-pop 818 chr1 30540387 30540388 rs1228824 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2598.000000,2410.000000,2410.000000,2598.000000, 0.259385,0.240615,0.240615,0.259385, maf-5-some-pop,maf-5-all-pops 818 chr1 30540582 30540583 rs1228825 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 4488.000000,520.000000,520.000000,4488.000000, 0.448083,0.051917,0.051917,0.448083, maf-5-some-pop 818 chr1 30542202 30542203 rs1149062 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2385.000000,2623.000000,2623.000000,2385.000000, 0.238119,0.261881,0.261881,0.238119, maf-5-some-pop,maf-5-all-pops 818 chr1 30542924 30542925 rs11582899 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,genotype-conflict 818 chr1 30543883 30543884 rs267662 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 818 chr1 30545514 30545515 rs1228828 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 457.000000,4551.000000,4551.000000,457.000000, 0.045627,0.454373,0.454373,0.045627, maf-5-some-pop 818 chr1 30545721 30545722 rs267665 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 818 chr1 30549914 30549915 rs267672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop 818 chr1 30553541 30553542 rs403013 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3783.000000,1225.000000, 0.755391,0.244609, maf-5-some-pop,genotype-conflict 818 chr1 30553935 30553936 rs1228833 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop 818 chr1 30556721 30556722 rs6671795 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 754.000000,4254.000000, 0.150559,0.849441, maf-5-some-pop 818 chr1 30563689 30563690 rs11584574 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3050.000000,1958.000000, 0.609026,0.390974, maf-5-some-pop,maf-5-all-pops 818 chr1 30566925 30566926 rs16833246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop,maf-5-all-pops 818 chr1 30569676 30569677 rs7541271 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop,genotype-conflict 818 chr1 30574157 30574158 rs2076977 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3055.000000,1953.000000, 0.610024,0.389976, maf-5-some-pop,maf-5-all-pops 818 chr1 30578593 30578594 rs10915027 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop 818 chr1 30578617 30578618 rs10799077 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2245.000000,2763.000000, 0.448283,0.551717, maf-5-some-pop,maf-5-all-pops 818 chr1 30578921 30578922 rs10915029 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2407.000000,2601.000000, 0.480631,0.519369, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30579226 30579227 rs926980 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 458.000000,4550.000000,4550.000000,458.000000, 0.045727,0.454273,0.454273,0.045727, maf-5-some-pop 818 chr1 30590081 30590082 rs10799079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2940.000000,2068.000000, 0.587061,0.412939, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30593354 30593355 rs12143885 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1291.000000,3717.000000, 0.257788,0.742212, maf-5-some-pop 818 chr1 30596559 30596560 rs722377 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 581.000000,4427.000000,4427.000000,581.000000, 0.058007,0.441993,0.441993,0.058007, maf-5-some-pop 818 chr1 30599904 30599905 rs10915031 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4108.000000,900.000000, 0.820288,0.179712, maf-5-some-pop 818 chr1 30600503 30600504 rs7541381 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3681.000000,1327.000000, 0.735024,0.264976, maf-5-some-pop,maf-5-all-pops 818 chr1 30609988 30609989 rs11804863 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 818 chr1 30610535 30610536 rs2376487 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2568.000000,2440.000000,2440.000000,2568.000000, 0.256390,0.243610,0.243610,0.256390, maf-5-some-pop,maf-5-all-pops 818 chr1 30613671 30613672 rs7552599 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1174.000000,3834.000000, 0.234425,0.765575, maf-5-some-pop 818 chr1 30617855 30617856 rs1575072 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2066.000000,2942.000000,2942.000000,2066.000000, 0.206270,0.293730,0.293730,0.206270, maf-5-some-pop,maf-5-all-pops 818 chr1 30619204 30619205 rs10799080 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop,maf-5-all-pops 818 chr1 30619405 30619406 rs10489685 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 4627.000000,381.000000,381.000000,4627.000000, 0.461961,0.038039,0.038039,0.461961, maf-5-some-pop,genotype-conflict 818 chr1 30619463 30619464 rs1543424 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4253.000000,755.000000,755.000000,4253.000000, 0.424621,0.075379,0.075379,0.424621, maf-5-some-pop,genotype-conflict 818 chr1 30619865 30619866 rs2748702 0 - C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30622908 30622909 rs16866057 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop,maf-5-all-pops 818 chr1 30627618 30627619 rs1321117 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2111.000000,2897.000000,2897.000000,2111.000000, 0.210763,0.289237,0.289237,0.210763, maf-5-some-pop,maf-5-all-pops 818 chr1 30627711 30627712 rs2180233 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4344.000000,664.000000,664.000000,4344.000000, 0.433706,0.066294,0.066294,0.433706, maf-5-some-pop,microattr-tpa,genotype-conflict 818 chr1 30633682 30633683 rs4949546 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop 818 chr1 30633726 30633727 rs4949547 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop,maf-5-all-pops 818 chr1 30635651 30635652 rs7537205 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3448.000000,1560.000000, 0.688498,0.311502, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30637396 30637397 rs6678179 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1395.000000,3613.000000, 0.278554,0.721446, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30639235 30639236 rs6425864 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3704.000000,1304.000000, 0.739617,0.260383, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30639317 30639318 rs7530575 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2340.000000,2668.000000, 0.467252,0.532748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30641645 30641646 rs6425866 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4190.000000,818.000000, 0.836661,0.163339, maf-5-some-pop,genotype-conflict 818 chr1 30642729 30642730 rs6697238 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop 818 chr1 30644095 30644096 rs6701005 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop 818 chr1 30644673 30644674 rs6704040 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop 818 chr1 30655211 30655212 rs12049424 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop 818 chr1 30659171 30659172 rs877117 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2129.000000,2879.000000, 0.425120,0.574880, maf-5-some-pop,maf-5-all-pops 818 chr1 30659436 30659437 rs6425879 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2129.000000,2879.000000, 0.425120,0.574880, maf-5-some-pop,maf-5-all-pops 818 chr1 30659497 30659498 rs6425880 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2879.000000,2129.000000, 0.574880,0.425120, maf-5-some-pop 818 chr1 30660402 30660403 rs7523165 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2854.000000,2154.000000, 0.569888,0.430112, maf-5-some-pop,maf-5-all-pops 818 chr1 30660606 30660607 rs6425882 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,genotype-conflict 818 chr1 30660887 30660888 rs4949552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop 818 chr1 30662537 30662538 rs976189 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 769.000000,4239.000000, 0.153554,0.846446, maf-5-some-pop 818 chr1 30662849 30662850 rs976190 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3156.000000,1852.000000, 0.630192,0.369808, maf-5-some-pop,maf-5-all-pops,genotype-conflict 818 chr1 30665518 30665519 rs10915041 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3056.000000,1952.000000, 0.610224,0.389776, maf-5-some-pop,maf-5-all-pops 818 chr1 30666756 30666757 rs2889590 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop,maf-5-all-pops 818 chr1 30668658 30668659 rs11802730 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop 818 chr1 30669468 30669469 rs10799085 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,genotype-conflict 819 chr1 30672770 30672771 rs941518 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1321.000000,3687.000000, 0.263778,0.736222, maf-5-some-pop 819 chr1 30672844 30672845 rs12124046 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 732.000000,4276.000000, 0.146166,0.853834, maf-5-some-pop 819 chr1 30678276 30678277 rs4949556 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2479.000000,2529.000000, 0.495008,0.504992, maf-5-some-pop,maf-5-all-pops 819 chr1 30692597 30692598 rs2142714 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1859.000000,3149.000000,3149.000000,1859.000000, 0.185603,0.314397,0.314397,0.185603, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30692647 30692648 rs2142713 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3106.000000,1902.000000,1902.000000,3106.000000, 0.310104,0.189896,0.189896,0.310104, maf-5-some-pop,maf-5-all-pops 819 chr1 30693903 30693904 rs459852 0 + G G C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4947.000000,61.000000, 0.987819,0.012181, maf-5-some-pop 819 chr1 30696373 30696374 rs16833425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3217.000000,1791.000000, 0.642372,0.357628, maf-5-some-pop,maf-5-all-pops 819 chr1 30696938 30696939 rs12407735 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3217.000000,1791.000000, 0.642372,0.357628, maf-5-some-pop,maf-5-all-pops 819 chr1 30698343 30698344 rs10915051 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,HGSV,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop 819 chr1 30699339 30699340 rs6684063 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 2490.000000,2518.000000, 0.497204,0.502796, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30706334 30706335 rs1884394 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2587.000000,2421.000000,2421.000000,2587.000000, 0.258287,0.241713,0.241713,0.258287, maf-5-some-pop,maf-5-all-pops 819 chr1 30706529 30706530 rs909623 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3083.000000,1925.000000,1925.000000,3083.000000, 0.307808,0.192192,0.192192,0.307808, maf-5-some-pop,maf-5-all-pops 819 chr1 30706678 30706679 rs10915052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop 819 chr1 30706930 30706931 rs2377270 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2588.000000,2420.000000, 0.516773,0.483227, maf-5-some-pop,maf-5-all-pops 819 chr1 30707290 30707291 rs2205841 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2307.000000,2701.000000,2701.000000,2307.000000, 0.230331,0.269669,0.269669,0.230331, maf-5-some-pop,maf-5-all-pops 819 chr1 30710854 30710855 rs1406862 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop,genotype-conflict 819 chr1 30711064 30711065 rs12410878 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop 819 chr1 30711164 30711165 rs2223283 0 - T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 819 chr1 30712925 30712926 rs1022490 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2344.000000,2664.000000,2664.000000,2344.000000, 0.234026,0.265974,0.265974,0.234026, maf-5-some-pop,maf-5-all-pops 819 chr1 30713475 30713476 rs1028313 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1066.000000,3942.000000,3942.000000,1066.000000, 0.106430,0.393570,0.393570,0.106430, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30715266 30715267 rs12096783 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 819 chr1 30716084 30716085 rs12058366 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1676.000000,3332.000000, 0.334665,0.665335, maf-5-some-pop 819 chr1 30716107 30716108 rs7526736 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 819 chr1 30716584 30716585 rs7525079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3985.000000,1023.000000, 0.795727,0.204273, maf-5-some-pop 819 chr1 30717971 30717972 rs7519623 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 819 chr1 30718247 30718248 rs1321116 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1426.000000,3582.000000,3582.000000,1426.000000, 0.142372,0.357628,0.357628,0.142372, maf-5-some-pop,maf-5-all-pops 819 chr1 30720493 30720494 rs12064439 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1426.000000,3582.000000, 0.284744,0.715256, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30731407 30731408 rs1321113 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop 819 chr1 30731697 30731698 rs1852994 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop,maf-5-all-pops 819 chr1 30734035 30734036 rs4949565 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2536.000000,2472.000000, 0.506390,0.493610, maf-5-some-pop,maf-5-all-pops 819 chr1 30737372 30737373 rs16833496 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop 819 chr1 30738431 30738432 rs4333892 0 + T T A/T genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1741.000000,3267.000000, 0.347644,0.652356, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30739133 30739134 rs2142716 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 712.000000,4296.000000,4296.000000,712.000000, 0.071086,0.428914,0.428914,0.071086, maf-5-some-pop,genotype-conflict 819 chr1 30739298 30739299 rs1028312 0 - C C G/T genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 711.000000,4297.000000,4297.000000,711.000000, 0.070986,0.429014,0.429014,0.070986, maf-5-some-pop,genotype-conflict 819 chr1 30739355 30739356 rs6425926 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3190.000000,1818.000000, 0.636981,0.363019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30739795 30739796 rs10915059 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3194.000000,1814.000000, 0.637780,0.362220, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30741495 30741496 rs730842 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1611.000000,3397.000000, 0.321685,0.678315, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30741655 30741656 rs730841 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 819 chr1 30741949 30741950 rs909624 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30745209 30745210 rs4949253 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop 819 chr1 30749756 30749757 rs6684672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop 819 chr1 30750678 30750679 rs459233 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4219.000000,789.000000,789.000000,4219.000000, 0.421226,0.078774,0.078774,0.421226, maf-5-some-pop 819 chr1 30754601 30754602 rs12076772 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 819 chr1 30756007 30756008 rs12040153 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop 819 chr1 30756279 30756280 rs396577 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1435.000000,3573.000000, 0.286542,0.713458, maf-5-some-pop,genotype-conflict 819 chr1 30759955 30759956 rs463128 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4121.000000,887.000000,887.000000,4121.000000, 0.411442,0.088558,0.088558,0.411442, maf-5-some-pop,microattr-tpa 819 chr1 30760604 30760605 rs12089431 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 819 chr1 30760788 30760789 rs7520217 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4467.000000,541.000000, 0.891973,0.108027, maf-5-some-pop 819 chr1 30762237 30762238 rs107550 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 767.000000,4241.000000, 0.153155,0.846845, maf-5-some-pop,maf-5-all-pops 819 chr1 30764437 30764438 rs6678760 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,genotype-conflict 819 chr1 30765871 30765872 rs10915064 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4703.000000,305.000000, 0.939097,0.060903, maf-5-some-pop 819 chr1 30769306 30769307 rs1321112 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4835.000000,173.000000,173.000000,4835.000000, 0.482728,0.017272,0.017272,0.482728, maf-5-some-pop,genotype-conflict 819 chr1 30773655 30773656 rs2377271 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop 819 chr1 30777088 30777089 rs427821 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops 819 chr1 30788888 30788889 rs1555045 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1575.000000,3433.000000,3433.000000,1575.000000, 0.157248,0.342752,0.342752,0.157248, maf-5-some-pop,maf-5-all-pops 819 chr1 30789206 30789207 rs117312 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3016.000000,1992.000000,1992.000000,3016.000000, 0.301118,0.198882,0.198882,0.301118, maf-5-some-pop,maf-5-all-pops 819 chr1 30789340 30789341 rs117311 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TSC-CSHL, 4 A,C,G,T, 282.000000,4726.000000,4726.000000,282.000000, 0.028155,0.471845,0.471845,0.028155, maf-5-some-pop,genotype-conflict 819 chr1 30789774 30789775 rs16833570 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1580.000000,3428.000000, 0.315495,0.684505, maf-5-some-pop,maf-5-all-pops 819 chr1 30791071 30791072 rs12024644 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop 819 chr1 30794413 30794414 rs10429863 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1959.000000,3049.000000, 0.391174,0.608826, maf-5-some-pop,maf-5-all-pops 819 chr1 30794568 30794569 rs2377272 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops,genotype-conflict 819 chr1 30796504 30796505 rs734994 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop,genotype-conflict 819 chr1 30798435 30798436 rs7528451 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2198.000000,2810.000000, 0.438898,0.561102, maf-5-some-pop,maf-5-all-pops 819 chr1 30798549 30798550 rs12060554 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop 819 chr1 30800829 30800830 rs976876 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2746.000000,2262.000000,2262.000000,2746.000000, 0.274161,0.225839,0.225839,0.274161, maf-5-some-pop,maf-5-all-pops 820 chr1 30802597 30802598 rs6688031 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3239.000000,1769.000000, 0.646765,0.353235, maf-5-some-pop,maf-5-all-pops 820 chr1 30803477 30803478 rs6425951 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3124.000000,1884.000000, 0.623802,0.376198, maf-5-some-pop,maf-5-all-pops 820 chr1 30803963 30803964 rs13374017 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop 820 chr1 30804361 30804362 rs16833585 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop 820 chr1 30807153 30807154 rs375526 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4422.000000,586.000000,586.000000,4422.000000, 0.441494,0.058506,0.058506,0.441494, maf-5-some-pop 820 chr1 30807198 30807199 rs12072075 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2170.000000,2838.000000, 0.433307,0.566693, maf-5-some-pop,maf-5-all-pops 820 chr1 30808263 30808264 rs10915083 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2232.000000,2776.000000, 0.445687,0.554313, maf-5-some-pop 820 chr1 30808551 30808552 rs4949578 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2548.000000,2460.000000, 0.508786,0.491214, maf-5-some-pop,maf-5-all-pops 820 chr1 30810850 30810851 rs10915084 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2917.000000,2091.000000, 0.582468,0.417532, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30810941 30810942 rs437628 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 872.000000,4136.000000,4136.000000,872.000000, 0.087061,0.412939,0.412939,0.087061, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30813246 30813247 rs1022487 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2372.000000,2636.000000,2636.000000,2372.000000, 0.236821,0.263179,0.263179,0.236821, maf-5-some-pop,maf-5-all-pops 820 chr1 30817701 30817702 rs423228 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4009.000000,999.000000,999.000000,4009.000000, 0.400260,0.099740,0.099740,0.400260, maf-5-some-pop,maf-5-all-pops 820 chr1 30820337 30820338 rs2149609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 820 chr1 30822077 30822078 rs2092133 0 - A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30824962 30824963 rs641347 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop,maf-5-all-pops 820 chr1 30827806 30827807 rs657200 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop,maf-5-all-pops 820 chr1 30827888 30827889 rs685433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop,maf-5-all-pops 820 chr1 30828134 30828135 rs589106 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4082.000000,926.000000, 0.815096,0.184904, maf-5-some-pop,maf-5-all-pops 820 chr1 30833483 30833484 rs1329108 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2772.000000,2236.000000, 0.553514,0.446486, maf-5-some-pop,maf-5-all-pops 820 chr1 30834374 30834375 rs2377278 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 1945.000000,3063.000000, 0.388379,0.611621, 820 chr1 30842743 30842744 rs592232 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 904.000000,4104.000000,4104.000000,904.000000, 0.090256,0.409744,0.409744,0.090256, maf-5-some-pop,maf-5-all-pops 820 chr1 30843914 30843915 rs674001 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3598.000000,1410.000000,1410.000000,3598.000000, 0.359225,0.140775,0.140775,0.359225, maf-5-some-pop,maf-5-all-pops 820 chr1 30844119 30844120 rs642819 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 612.000000,4396.000000,4396.000000,612.000000, 0.061102,0.438898,0.438898,0.061102, maf-5-some-pop 820 chr1 30844350 30844351 rs672125 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1102.000000,3906.000000,3906.000000,1102.000000, 0.110024,0.389976,0.389976,0.110024, maf-5-some-pop,maf-5-all-pops 820 chr1 30844675 30844676 rs670721 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 625.000000,4383.000000,4383.000000,625.000000, 0.062400,0.437600,0.437600,0.062400, maf-5-some-pop,genotype-conflict 820 chr1 30844972 30844973 rs10799100 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2929.000000,2079.000000, 0.584864,0.415136, maf-5-some-pop,maf-5-all-pops 820 chr1 30848380 30848381 rs1794319 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30849033 30849034 rs1410870 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2497.000000,2511.000000, 0.498602,0.501398, maf-5-some-pop,maf-5-all-pops 820 chr1 30849187 30849188 rs12062319 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop,genotype-conflict 820 chr1 30852012 30852013 rs16833636 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 403.000000,4605.000000, 0.080471,0.919529, maf-5-some-pop 820 chr1 30852096 30852097 rs7552658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2640.000000,2368.000000, 0.527157,0.472843, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30852688 30852689 rs10915096 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1597.000000,3411.000000, 0.318890,0.681110, maf-5-some-pop,maf-5-all-pops 820 chr1 30859257 30859258 rs10753326 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop 820 chr1 30862460 30862461 rs4949262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2375.000000,2633.000000, 0.474241,0.525759, maf-5-some-pop,maf-5-all-pops 820 chr1 30862619 30862620 rs587527 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 960.000000,4048.000000,4048.000000,960.000000, 0.095847,0.404153,0.404153,0.095847, maf-5-some-pop 820 chr1 30863256 30863257 rs629180 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3972.000000,1036.000000,1036.000000,3972.000000, 0.396565,0.103435,0.103435,0.396565, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30863378 30863379 rs10915100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 820 chr1 30863824 30863825 rs7519941 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2632.000000,2376.000000, 0.525559,0.474441, maf-5-some-pop,maf-5-all-pops 820 chr1 30868572 30868573 rs590548 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1194.000000,3814.000000,3814.000000,1194.000000, 0.119209,0.380791,0.380791,0.119209, maf-5-some-pop,maf-5-all-pops 820 chr1 30875109 30875110 rs6699099 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1443.000000,3565.000000, 0.288139,0.711861, maf-5-some-pop,maf-5-all-pops 820 chr1 30875986 30875987 rs6656841 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2720.000000,2288.000000, 0.543131,0.456869, maf-5-some-pop,maf-5-all-pops 820 chr1 30877101 30877102 rs12737195 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 820 chr1 30878284 30878285 rs6656216 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 3685.000000,1323.000000, 0.735823,0.264177, maf-5-some-pop,genotype-conflict 820 chr1 30879041 30879042 rs12124364 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop 820 chr1 30883502 30883503 rs10799104 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3545.000000,1463.000000, 0.707867,0.292133, maf-5-some-pop,maf-5-all-pops 820 chr1 30885436 30885437 rs17364328 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 536.000000,4472.000000, 0.107029,0.892971, maf-5-some-pop 820 chr1 30885524 30885525 rs646198 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4360.000000,648.000000,648.000000,4360.000000, 0.435304,0.064696,0.064696,0.435304, maf-5-some-pop 820 chr1 30887645 30887646 rs6679758 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 1497.000000,3511.000000, 0.298922,0.701078, maf-5-some-pop,maf-5-all-pops 820 chr1 30887893 30887894 rs6662418 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3856.000000,1152.000000, 0.769968,0.230032, maf-5-some-pop,maf-5-all-pops 820 chr1 30888428 30888429 rs17372890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop,maf-5-all-pops 820 chr1 30889079 30889080 rs669216 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2075.000000,2933.000000, 0.414337,0.585663, maf-5-some-pop,maf-5-all-pops 820 chr1 30890531 30890532 rs12407007 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4097.000000,911.000000, 0.818091,0.181909, maf-5-some-pop,genotype-conflict 820 chr1 30893320 30893321 rs728340 0 - C C G/T genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 732.000000,4276.000000,4276.000000,732.000000, 0.073083,0.426917,0.426917,0.073083, maf-5-some-pop,genotype-conflict 820 chr1 30893540 30893541 rs728337 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1431.000000,3577.000000,3577.000000,1431.000000, 0.142871,0.357129,0.357129,0.142871, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30893719 30893720 rs16866159 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop 820 chr1 30893831 30893832 rs7519841 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 820 chr1 30894003 30894004 rs607241 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1735.000000,3273.000000, 0.346446,0.653554, maf-5-some-pop 820 chr1 30894529 30894530 rs654075 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1623.000000,3385.000000, 0.324081,0.675919, maf-5-some-pop 820 chr1 30894559 30894560 rs654123 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 C,T, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,genotype-conflict 820 chr1 30895851 30895852 rs13375716 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,WUGSC_SSAHASNP, 2 A,T, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 820 chr1 30901512 30901513 rs7528126 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 820 chr1 30901572 30901573 rs592395 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 427.000000,4581.000000,4581.000000,427.000000, 0.042632,0.457368,0.457368,0.042632, maf-5-some-pop 820 chr1 30902361 30902362 rs12136303 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3904.000000,1104.000000, 0.779553,0.220447, maf-5-some-pop,maf-5-all-pops 820 chr1 30904196 30904197 rs7544087 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,G, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 820 chr1 30917198 30917199 rs9426043 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 820 chr1 30918165 30918166 rs11577262 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1147.000000,3861.000000, 0.229034,0.770966, maf-5-some-pop,genotype-conflict 820 chr1 30918452 30918453 rs744528 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3302.000000,1706.000000, 0.659345,0.340655, maf-5-some-pop 820 chr1 30918566 30918567 rs2003887 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 820 chr1 30920874 30920875 rs593280 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop,genotype-conflict 820 chr1 30923170 30923171 rs404815 0 - G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 820 chr1 30923202 30923203 rs454774 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 538.000000,4470.000000,4470.000000,538.000000, 0.053714,0.446286,0.446286,0.053714, maf-5-some-pop,genotype-conflict 820 chr1 30923422 30923423 rs369403 0 - C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 820 chr1 30923785 30923786 rs12047343 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3525.000000,1483.000000, 0.703874,0.296126, maf-5-some-pop,genotype-conflict 820 chr1 30924111 30924112 rs10915117 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,genotype-conflict 820 chr1 30925284 30925285 rs628347 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2940.000000,2068.000000, 0.587061,0.412939, maf-5-some-pop,maf-5-all-pops 820 chr1 30925559 30925560 rs655204 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TSC-CSHL, 4 A,C,G,T, 45.000000,4963.000000,4963.000000,45.000000, 0.004493,0.495507,0.495507,0.004493, maf-5-some-pop 820 chr1 30926193 30926194 rs613989 0 - C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 820 chr1 30930478 30930479 rs6670642 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop 821 chr1 30934127 30934128 rs262621 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4305.000000,703.000000,703.000000,4305.000000, 0.429812,0.070188,0.070188,0.429812, maf-5-some-pop 821 chr1 30934912 30934913 rs262587 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 19.000000,4989.000000, 0.003794,0.996206, 821 chr1 30938346 30938347 rs262596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3583.000000,1425.000000, 0.715455,0.284545, maf-5-some-pop,genotype-conflict 821 chr1 30938666 30938667 rs262598 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 18.000000,4990.000000, 0.003594,0.996406, 821 chr1 30941635 30941636 rs262603 0 + A A A/C genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 636.000000,4372.000000, 0.126997,0.873003, maf-5-some-pop 821 chr1 30942901 30942902 rs262606 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2707.000000,2301.000000, 0.540535,0.459465, maf-5-some-pop,maf-5-all-pops 821 chr1 30943116 30943117 rs262608 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop 821 chr1 30944025 30944026 rs10158360 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 3633.000000,1375.000000, 0.725439,0.274561, maf-5-some-pop,maf-5-all-pops 821 chr1 30944866 30944867 rs1531923 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1468.000000,3540.000000, 0.293131,0.706869, maf-5-some-pop 821 chr1 30947515 30947516 rs169036 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 821 chr1 30950474 30950475 rs1574161 0 - T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 821 chr1 30951213 30951214 rs3104431 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 4 A,C,G,T, 3648.000000,1360.000000,1360.000000,3648.000000, 0.364217,0.135783,0.135783,0.364217, maf-5-some-pop,maf-5-all-pops 821 chr1 30955524 30955525 rs411761 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 123.000000,4885.000000,4885.000000,123.000000, 0.012280,0.487720,0.487720,0.012280, maf-5-some-pop,genotype-conflict 821 chr1 30956296 30956297 rs7519586 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2352.000000,2656.000000, 0.469649,0.530351, maf-5-some-pop,maf-5-all-pops 821 chr1 30956411 30956412 rs10915128 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3621.000000,1387.000000, 0.723043,0.276957, maf-5-some-pop,genotype-conflict 821 chr1 30958719 30958720 rs7511782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4310.000000,698.000000, 0.860623,0.139377, maf-5-some-pop 821 chr1 30962402 30962403 rs7513075 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 4439.000000,569.000000, 0.886382,0.113618, maf-5-some-pop,genotype-conflict 821 chr1 30962473 30962474 rs415314 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2133.000000,2875.000000,2875.000000,2133.000000, 0.212959,0.287041,0.287041,0.212959, maf-5-some-pop,genotype-conflict 821 chr1 30975927 30975928 rs12408702 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3805.000000,1203.000000, 0.759784,0.240216, maf-5-some-pop,genotype-conflict 821 chr1 30976101 30976102 rs12084025 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 821 chr1 30976432 30976433 rs1351898 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,T, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop 821 chr1 30977042 30977043 rs10915136 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop 821 chr1 30977478 30977479 rs10799107 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3787.000000,1221.000000, 0.756190,0.243810, maf-5-some-pop 821 chr1 30980130 30980131 rs16833790 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3477.000000,1531.000000, 0.694289,0.305711, maf-5-some-pop 821 chr1 30981124 30981125 rs454900 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 821 chr1 30981193 30981194 rs16833794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop 821 chr1 30984662 30984663 rs2133041 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop 821 chr1 30985075 30985076 rs3104429 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3291.000000,1717.000000, 0.657149,0.342851, maf-5-some-pop,maf-5-all-pops 821 chr1 30985820 30985821 rs262634 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1722.000000,3286.000000,3286.000000,1722.000000, 0.171925,0.328075,0.328075,0.171925, maf-5-some-pop,maf-5-all-pops 821 chr1 30987413 30987414 rs12727898 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop 821 chr1 30987685 30987686 rs1874746 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2528.000000,2480.000000, 0.504792,0.495208, maf-5-some-pop,maf-5-all-pops,genotype-conflict 821 chr1 30987719 30987720 rs11590978 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop,genotype-conflict 821 chr1 30988798 30988799 rs403855 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 A,G, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop 821 chr1 30989433 30989434 rs11811161 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 821 chr1 30990202 30990203 rs419355 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,C, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 821 chr1 30991928 30991929 rs6666656 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4502.000000,506.000000, 0.898962,0.101038, maf-5-some-pop 821 chr1 30992446 30992447 rs12409701 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1966.000000,3042.000000, 0.392572,0.607428, maf-5-some-pop,maf-5-all-pops 821 chr1 30992845 30992846 rs425593 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1962.000000,3046.000000, 0.391773,0.608227, maf-5-some-pop,maf-5-all-pops 821 chr1 30995427 30995428 rs12562501 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 821 chr1 30997925 30997926 rs12402788 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 821 chr1 30998095 30998096 rs6692098 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4127.000000,881.000000, 0.824081,0.175919, maf-5-some-pop,maf-5-all-pops 821 chr1 30998148 30998149 rs6687467 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,G, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop 821 chr1 30998578 30998579 rs10915147 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 821 chr1 30999349 30999350 rs900963 0 - A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 821 chr1 31000077 31000078 rs16833842 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop 821 chr1 31000820 31000821 rs16833849 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4224.000000,784.000000, 0.843450,0.156550, maf-5-some-pop 821 chr1 31001699 31001700 rs6687321 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop 821 chr1 31005668 31005669 rs4245644 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 934.000000,4074.000000, 0.186502,0.813498, maf-5-some-pop,maf-5-all-pops,genotype-conflict 821 chr1 31005712 31005713 rs4245645 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 821 chr1 31006102 31006103 rs4949613 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 821 chr1 31006305 31006306 rs12067717 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop 821 chr1 31006620 31006621 rs6704396 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2208.000000,2800.000000, 0.440895,0.559105, maf-5-some-pop,maf-5-all-pops,genotype-conflict 821 chr1 31007021 31007022 rs16833853 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 821 chr1 31007036 31007037 rs12127272 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop,maf-5-all-pops 821 chr1 31007471 31007472 rs4949614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4594.000000,414.000000, 0.917332,0.082668, maf-5-some-pop 821 chr1 31011625 31011626 rs12031413 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop,genotype-conflict 821 chr1 31013774 31013775 rs51397 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2482.000000,2526.000000, 0.495607,0.504393, maf-5-some-pop,maf-5-all-pops 821 chr1 31013957 31013958 rs262614 0 + G G A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 821 chr1 31014873 31014874 rs1484839 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 821 chr1 31015726 31015727 rs262609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2190.000000,2818.000000, 0.437300,0.562700, maf-5-some-pop,maf-5-all-pops 821 chr1 31016563 31016564 rs12035623 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1219.000000,3789.000000, 0.243411,0.756589, maf-5-some-pop 821 chr1 31017000 31017001 rs1484836 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,C, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 821 chr1 31017375 31017376 rs262619 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2202.000000,2806.000000, 0.439696,0.560304, maf-5-some-pop,maf-5-all-pops 821 chr1 31017682 31017683 rs1484837 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 821 chr1 31022481 31022482 rs12131096 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops 821 chr1 31024520 31024521 rs12033258 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 821 chr1 31024966 31024967 rs2377368 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 374.000000,4634.000000,4634.000000,374.000000, 0.037340,0.462660,0.462660,0.037340, maf-5-some-pop 821 chr1 31025390 31025391 rs1826963 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3986.000000,1022.000000,1022.000000,3986.000000, 0.397963,0.102037,0.102037,0.397963, maf-5-some-pop,maf-5-all-pops 821 chr1 31027265 31027266 rs12040284 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4173.000000,835.000000, 0.833267,0.166733, maf-5-some-pop 821 chr1 31034662 31034663 rs3104425 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2713.000000,2295.000000,2295.000000,2713.000000, 0.270867,0.229133,0.229133,0.270867, maf-5-some-pop,maf-5-all-pops 821 chr1 31041805 31041806 rs10915158 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 2438.000000,2570.000000, 0.486821,0.513179, maf-5-some-pop,maf-5-all-pops 821 chr1 31041915 31041916 rs12043086 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4418.000000,590.000000, 0.882188,0.117812, maf-5-some-pop 821 chr1 31041972 31041973 rs12045420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop,genotype-conflict 821 chr1 31043624 31043625 rs10915161 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 821 chr1 31045508 31045509 rs3104435 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1181.000000,3827.000000,3827.000000,1181.000000, 0.117911,0.382089,0.382089,0.117911, maf-5-some-pop 821 chr1 31047794 31047795 rs3124326 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 821 chr1 31053081 31053082 rs1391377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 551.000000,4457.000000, 0.110024,0.889976, maf-5-some-pop 821 chr1 31058301 31058302 rs520272 0 + A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 2579.000000,2429.000000, 0.514976,0.485024, maf-5-some-pop,maf-5-all-pops 821 chr1 31058784 31058785 rs1039183 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops 821 chr1 31059545 31059546 rs552530 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 685.000000,4323.000000, 0.136781,0.863219, maf-5-some-pop 821 chr1 31059863 31059864 rs555920 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3576.000000,1432.000000, 0.714058,0.285942, maf-5-some-pop,maf-5-all-pops,genotype-conflict 821 chr1 31063389 31063390 rs485447 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 571.000000,4437.000000, 0.114018,0.885982, maf-5-some-pop 821 chr1 31063899 31063900 rs1846194 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 C,T, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop,genotype-conflict 822 chr1 31064145 31064146 rs2647102 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2636.000000,2372.000000, 0.526358,0.473642, maf-5-some-pop,maf-5-all-pops 822 chr1 31064202 31064203 rs788871 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2375.000000,2633.000000, 0.474241,0.525759, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31065218 31065219 rs1587302 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop,maf-5-all-pops 822 chr1 31066493 31066494 rs672798 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1364.000000,3644.000000,3644.000000,1364.000000, 0.136182,0.363818,0.363818,0.136182, maf-5-some-pop,maf-5-all-pops 822 chr1 31068251 31068252 rs1024060 0 + A A A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop 822 chr1 31069765 31069766 rs12125743 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2095.000000,2913.000000, 0.418331,0.581669, maf-5-some-pop,maf-5-all-pops 822 chr1 31070153 31070154 rs609015 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4871.000000,137.000000,137.000000,4871.000000, 0.486322,0.013678,0.013678,0.486322, maf-5-some-pop 822 chr1 31070185 31070186 rs41480347 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 455.000000,4553.000000,4553.000000,455.000000, 0.045427,0.454573,0.454573,0.045427, maf-5-some-pop 822 chr1 31070338 31070339 rs1853550 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 587.000000,4421.000000,4421.000000,587.000000, 0.058606,0.441394,0.441394,0.058606, maf-5-some-pop,maf-5-all-pops 822 chr1 31070464 31070465 rs1575513 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 585.000000,4423.000000,4423.000000,585.000000, 0.058407,0.441593,0.441593,0.058407, maf-5-some-pop,genotype-conflict 822 chr1 31071208 31071209 rs41377050 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1436.000000,3572.000000, 0.286741,0.713259, maf-5-some-pop,maf-5-all-pops 822 chr1 31071508 31071509 rs41343247 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3085.000000,1923.000000, 0.616014,0.383986, maf-5-some-pop,maf-5-all-pops 822 chr1 31074792 31074793 rs6426041 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2187.000000,2821.000000, 0.436701,0.563299, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31075074 31075075 rs6426043 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3005.000000,2003.000000, 0.600040,0.399960, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31076993 31076994 rs7551357 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3392.000000,1616.000000, 0.677316,0.322684, maf-5-some-pop,maf-5-all-pops 822 chr1 31077027 31077028 rs6426044 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop,genotype-conflict 822 chr1 31077464 31077465 rs12405950 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3256.000000,1752.000000, 0.650160,0.349840, maf-5-some-pop,maf-5-all-pops 822 chr1 31077832 31077833 rs12408772 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3366.000000,1642.000000, 0.672125,0.327875, maf-5-some-pop,maf-5-all-pops 822 chr1 31078836 31078837 rs6426046 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3321.000000,1687.000000, 0.663139,0.336861, maf-5-some-pop,maf-5-all-pops 822 chr1 31080260 31080261 rs1391379 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3283.000000,1725.000000, 0.655551,0.344449, maf-5-some-pop,maf-5-all-pops 822 chr1 31080611 31080612 rs4949279 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1687.000000,3321.000000, 0.336861,0.663139, maf-5-some-pop,maf-5-all-pops 822 chr1 31080834 31080835 rs646789 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop 822 chr1 31080961 31080962 rs548273 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2290.000000,2718.000000, 0.457268,0.542732, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31081440 31081441 rs633832 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop 822 chr1 31083477 31083478 rs544789 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4395.000000,613.000000, 0.877596,0.122404, maf-5-some-pop,genotype-conflict 822 chr1 31085725 31085726 rs518653 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2815.000000,2193.000000, 0.562101,0.437899, maf-5-some-pop,maf-5-all-pops 822 chr1 31088699 31088700 rs12085903 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 822 chr1 31088966 31088967 rs7518010 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 1578.000000,3430.000000, 0.315096,0.684904, maf-5-some-pop,maf-5-all-pops 822 chr1 31090460 31090461 rs12741835 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3686.000000,1322.000000, 0.736022,0.263978, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31090514 31090515 rs12049548 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop 822 chr1 31091446 31091447 rs474814 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2317.000000,2691.000000,2691.000000,2317.000000, 0.231330,0.268670,0.268670,0.231330, maf-5-some-pop,maf-5-all-pops 822 chr1 31094624 31094625 rs788880 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 238.000000,4770.000000,4770.000000,238.000000, 0.023762,0.476238,0.476238,0.023762, maf-5-some-pop 822 chr1 31096979 31096980 rs12137409 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop,maf-5-all-pops 822 chr1 31097551 31097552 rs12751256 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3554.000000,1454.000000, 0.709665,0.290335, maf-5-some-pop,maf-5-all-pops 822 chr1 31100667 31100668 rs512717 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 182.000000,4826.000000,4826.000000,182.000000, 0.018171,0.481829,0.481829,0.018171, maf-5-some-pop 822 chr1 31101317 31101318 rs12122246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4435.000000,573.000000, 0.885583,0.114417, maf-5-some-pop 822 chr1 31102632 31102633 rs606086 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 490.000000,4518.000000, 0.097843,0.902157, maf-5-some-pop 822 chr1 31105757 31105758 rs477802 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 238.000000,4770.000000,4770.000000,238.000000, 0.023762,0.476238,0.476238,0.023762, maf-5-some-pop 822 chr1 31106271 31106272 rs12732386 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 822 chr1 31106666 31106667 rs665053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 822 chr1 31109478 31109479 rs486532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1583.000000,3425.000000, 0.316094,0.683906, maf-5-some-pop,maf-5-all-pops 822 chr1 31112636 31112637 rs10493046 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 1891.000000,3117.000000, 0.377596,0.622404, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31113141 31113142 rs10914167 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 672.000000,4336.000000, 0.134185,0.865815, maf-5-some-pop,genotype-conflict 822 chr1 31113231 31113232 rs1882027 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 674.000000,4334.000000,4334.000000,674.000000, 0.067292,0.432708,0.432708,0.067292, maf-5-some-pop 822 chr1 31118382 31118383 rs1924270 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3534.000000,1474.000000, 0.705671,0.294329, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31119549 31119550 rs674190 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1182.000000,3826.000000,3826.000000,1182.000000, 0.118011,0.381989,0.381989,0.118011, maf-5-some-pop,maf-5-all-pops 822 chr1 31135669 31135670 rs9943126 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4199.000000,809.000000, 0.838458,0.161542, maf-5-some-pop 822 chr1 31136147 31136148 rs10914180 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,genotype-conflict 822 chr1 31139077 31139078 rs1983822 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3251.000000,1757.000000,1757.000000,3251.000000, 0.324581,0.175419,0.175419,0.324581, maf-5-some-pop,maf-5-all-pops 822 chr1 31139579 31139580 rs1983821 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2661.000000,2347.000000,2347.000000,2661.000000, 0.265675,0.234325,0.234325,0.265675, maf-5-some-pop,maf-5-all-pops 822 chr1 31139946 31139947 rs9662879 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 822 chr1 31143034 31143035 rs1212652 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1382.000000,3626.000000,3626.000000,1382.000000, 0.137979,0.362021,0.362021,0.137979, maf-5-some-pop,genotype-conflict 822 chr1 31143527 31143528 rs1188425 0 - C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31145178 31145179 rs1211793 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1236.000000,3772.000000,3772.000000,1236.000000, 0.123403,0.376597,0.376597,0.123403, maf-5-some-pop,maf-5-all-pops 822 chr1 31145391 31145392 rs1188418 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3772.000000,1236.000000,1236.000000,3772.000000, 0.376597,0.123403,0.123403,0.376597, maf-5-some-pop,maf-5-all-pops 822 chr1 31145761 31145762 rs4949176 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 822 chr1 31148955 31148956 rs2147081 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 555.000000,4453.000000,4453.000000,555.000000, 0.055411,0.444589,0.444589,0.055411, maf-5-some-pop 822 chr1 31149648 31149649 rs1188387 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 822 chr1 31151318 31151319 rs2700541 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3639.000000,1369.000000, 0.726637,0.273363, maf-5-some-pop 822 chr1 31151451 31151452 rs1408151 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1245.000000,3763.000000,3763.000000,1245.000000, 0.124301,0.375699,0.375699,0.124301, maf-5-some-pop,genotype-conflict 822 chr1 31155589 31155590 rs1124615 0 - T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 822 chr1 31163455 31163456 rs1188446 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2542.000000,2466.000000,2466.000000,2542.000000, 0.253794,0.246206,0.246206,0.253794, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31163875 31163876 rs1188445 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1753.000000,3255.000000,3255.000000,1753.000000, 0.175020,0.324980,0.324980,0.175020, maf-5-some-pop,maf-5-all-pops 822 chr1 31167560 31167561 rs716486 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1076.000000,3932.000000,3932.000000,1076.000000, 0.107428,0.392572,0.392572,0.107428, maf-5-some-pop,genotype-conflict 822 chr1 31168161 31168162 rs1072498 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1935.000000,3073.000000,3073.000000,1935.000000, 0.193191,0.306809,0.306809,0.193191, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31172473 31172474 rs1731690 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2279.000000,2729.000000,2729.000000,2279.000000, 0.227536,0.272464,0.272464,0.227536, maf-5-some-pop,maf-5-all-pops 822 chr1 31175675 31175676 rs2700523 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31176941 31176942 rs1149023 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3636.000000,1372.000000, 0.726038,0.273962, maf-5-some-pop,maf-5-all-pops 822 chr1 31177072 31177073 rs1149024 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop,maf-5-all-pops 822 chr1 31180713 31180714 rs912218 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 832.000000,4176.000000,4176.000000,832.000000, 0.083067,0.416933,0.416933,0.083067, maf-5-some-pop 822 chr1 31181638 31181639 rs4949288 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4222.000000,786.000000, 0.843051,0.156949, maf-5-some-pop 822 chr1 31183485 31183486 rs7555405 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31184856 31184857 rs1188401 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2797.000000,2211.000000, 0.558506,0.441494, maf-5-some-pop,maf-5-all-pops,genotype-conflict 822 chr1 31184877 31184878 rs1188402 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2218.000000,2790.000000, 0.442891,0.557109, maf-5-some-pop,maf-5-all-pops 823 chr1 31197044 31197045 rs1149045 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,maf-5-all-pops 823 chr1 31197400 31197401 rs1149046 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3672.000000,1336.000000, 0.733227,0.266773, maf-5-some-pop,maf-5-all-pops,genotype-conflict 823 chr1 31197798 31197799 rs3828051 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3082.000000,1926.000000,1926.000000,3082.000000, 0.307708,0.192292,0.192292,0.307708, maf-5-some-pop,maf-5-all-pops 823 chr1 31199877 31199878 rs12404046 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4190.000000,818.000000, 0.836661,0.163339, maf-5-some-pop,maf-5-all-pops 823 chr1 31201339 31201340 rs4949289 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2566.000000,2442.000000, 0.512380,0.487620, maf-5-some-pop,maf-5-all-pops 823 chr1 31203859 31203860 rs4949290 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop 823 chr1 31207780 31207781 rs10914189 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3563.000000,1445.000000, 0.711462,0.288538, maf-5-some-pop,genotype-conflict 823 chr1 31207901 31207902 rs1535637 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 394.000000,4614.000000,4614.000000,394.000000, 0.039337,0.460663,0.460663,0.039337, maf-5-some-pop,genotype-conflict 823 chr1 31209795 31209796 rs10914190 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1698.000000,3310.000000, 0.339058,0.660942, maf-5-some-pop,maf-5-all-pops 823 chr1 31210666 31210667 rs1188355 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 856.000000,4152.000000, 0.170927,0.829073, maf-5-some-pop 823 chr1 31211081 31211082 rs1188356 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 4060.000000,948.000000, 0.810703,0.189297, maf-5-some-pop 823 chr1 31211281 31211282 rs1188357 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3406.000000,1602.000000, 0.680112,0.319888, maf-5-some-pop,maf-5-all-pops 823 chr1 31215363 31215364 rs1050663 0 - T T A/C/G genomic single unknown 0 0 coding-synon exact 1 SingleClassTriAllelic,InconsistentAlleles 31 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1980.000000,3028.000000,3028.000000,1980.000000, 0.197684,0.302316,0.302316,0.197684, maf-5-some-pop,maf-5-all-pops 823 chr1 31223350 31223351 rs3828053 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 3882.000000,1126.000000, 0.775160,0.224840, maf-5-some-pop 823 chr1 31223392 31223393 rs7512767 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 823 chr1 31223586 31223587 rs16834046 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop 823 chr1 31223656 31223657 rs1188349 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1024.000000,3984.000000,3984.000000,1024.000000, 0.102236,0.397764,0.397764,0.102236, maf-5-some-pop,genotype-conflict 823 chr1 31229882 31229883 rs1407885 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1374.000000,3634.000000,3634.000000,1374.000000, 0.137181,0.362819,0.362819,0.137181, maf-5-some-pop 823 chr1 31231125 31231126 rs11801629 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 823 chr1 31231253 31231254 rs4614309 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2864.000000,2144.000000, 0.571885,0.428115, maf-5-some-pop,maf-5-all-pops 823 chr1 31232075 31232076 rs1323444 0 - G G A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 61.000000,4947.000000,4947.000000,61.000000, 0.006090,0.493910,0.493910,0.006090, maf-5-some-pop 823 chr1 31232275 31232276 rs1407881 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4593.000000,415.000000,415.000000,4593.000000, 0.458566,0.041434,0.041434,0.458566, maf-5-some-pop,genotype-conflict 823 chr1 31238495 31238496 rs942144 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 174.000000,4834.000000,4834.000000,174.000000, 0.017372,0.482628,0.482628,0.017372, maf-5-some-pop 823 chr1 31241311 31241312 rs12736883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop 823 chr1 31247235 31247236 rs878467 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2136.000000,2872.000000,2872.000000,2136.000000, 0.213259,0.286741,0.286741,0.213259, maf-5-some-pop,maf-5-all-pops 823 chr1 31247673 31247674 rs4949297 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 823 chr1 31251050 31251051 rs10737353 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1628.000000,3380.000000, 0.325080,0.674920, maf-5-some-pop,maf-5-all-pops 823 chr1 31251263 31251264 rs4601627 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop 823 chr1 31251697 31251698 rs4949299 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4056.000000,952.000000, 0.809904,0.190096, maf-5-some-pop 823 chr1 31267334 31267335 rs11578558 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop,maf-5-all-pops 823 chr1 31268507 31268508 rs12566116 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 887.000000,4121.000000, 0.177117,0.822883, maf-5-some-pop,maf-5-all-pops 823 chr1 31276561 31276562 rs10798810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops 823 chr1 31282837 31282838 rs4073147 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, genotype-conflict 823 chr1 31282891 31282892 rs4949303 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop,maf-5-all-pops 823 chr1 31286628 31286629 rs16834078 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3129.000000,1879.000000, 0.624800,0.375200, maf-5-some-pop,maf-5-all-pops 823 chr1 31288284 31288285 rs12133005 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1954.000000,3054.000000, 0.390176,0.609824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 823 chr1 31290146 31290147 rs16865763 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 461.000000,4547.000000, 0.092053,0.907947, maf-5-some-pop,genotype-conflict 823 chr1 31291347 31291348 rs3862889 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop,maf-5-all-pops 823 chr1 31291538 31291539 rs4949305 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop 823 chr1 31292607 31292608 rs10914214 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop,genotype-conflict 823 chr1 31292640 31292641 rs16834081 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 912.000000,4096.000000, 0.182109,0.817891, maf-5-some-pop,genotype-conflict 823 chr1 31294411 31294412 rs4949308 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop,genotype-conflict 823 chr1 31305844 31305845 rs16834083 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 907.000000,4101.000000, 0.181110,0.818890, maf-5-some-pop,maf-5-all-pops 823 chr1 31306485 31306486 rs4949310 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3163.000000,1845.000000, 0.631589,0.368411, maf-5-some-pop,maf-5-all-pops,genotype-conflict 823 chr1 31308176 31308177 rs4949311 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4176.000000,832.000000, 0.833866,0.166134, maf-5-some-pop,maf-5-all-pops 823 chr1 31308917 31308918 rs6693933 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1143.000000,3865.000000, 0.228235,0.771765, maf-5-some-pop,maf-5-all-pops 823 chr1 31309716 31309717 rs3923872 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WUGSC_SSAHASNP, 2 A,G, 1851.000000,3157.000000, 0.369609,0.630391, maf-5-some-pop,maf-5-all-pops 823 chr1 31311061 31311062 rs4245629 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 823 chr1 31311417 31311418 rs4551635 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1651.000000,3357.000000, 0.329673,0.670327, maf-5-some-pop,maf-5-all-pops 823 chr1 31311459 31311460 rs41430245 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 823 chr1 31313751 31313752 rs4245630 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 747.000000,4261.000000, 0.149161,0.850839, maf-5-some-pop,maf-5-all-pops,genotype-conflict 823 chr1 31314548 31314549 rs10914219 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1001.000000,4007.000000, 0.199880,0.800120, maf-5-some-pop,maf-5-all-pops,genotype-conflict 823 chr1 31315152 31315153 rs12143810 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops 823 chr1 31315190 31315191 rs10914220 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop,maf-5-all-pops 823 chr1 31315285 31315286 rs12029838 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 573.000000,4435.000000, 0.114417,0.885583, maf-5-some-pop 823 chr1 31315592 31315593 rs4949316 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2886.000000,2122.000000, 0.576278,0.423722, maf-5-some-pop,maf-5-all-pops,microattr-tpa 823 chr1 31316028 31316029 rs10914221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,genotype-conflict 823 chr1 31317529 31317530 rs7530095 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop,genotype-conflict 823 chr1 31318132 31318133 rs7516534 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 823 chr1 31325026 31325027 rs947646 0 - G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 823 chr1 31325089 31325090 rs947645 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 930.000000,4078.000000,4078.000000,930.000000, 0.092851,0.407149,0.407149,0.092851, maf-5-some-pop,genotype-conflict 824 chr1 31326526 31326527 rs947644 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4115.000000,893.000000,893.000000,4115.000000, 0.410843,0.089157,0.089157,0.410843, maf-5-some-pop,genotype-conflict 824 chr1 31327010 31327011 rs2491144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1623.000000,3385.000000, 0.324081,0.675919, maf-5-some-pop,maf-5-all-pops,genotype-conflict 824 chr1 31330731 31330732 rs2506968 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops 824 chr1 31332491 31332492 rs12745813 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF, 2 A,G, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 824 chr1 31333598 31333599 rs6425688 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop 824 chr1 31333900 31333901 rs4949318 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2960.000000,2048.000000, 0.591054,0.408946, maf-5-some-pop,maf-5-all-pops 824 chr1 31334414 31334415 rs2488226 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3772.000000,1236.000000,1236.000000,3772.000000, 0.376597,0.123403,0.123403,0.376597, maf-5-some-pop,maf-5-all-pops 824 chr1 31336925 31336926 rs2506970 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1081.000000,3927.000000, 0.215855,0.784145, maf-5-some-pop 824 chr1 31337292 31337293 rs2488235 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop,genotype-conflict 824 chr1 31337416 31337417 rs12408228 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1046.000000,3962.000000, 0.208866,0.791134, maf-5-some-pop,maf-5-all-pops 824 chr1 31340435 31340436 rs11584510 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 824 chr1 31345784 31345785 rs12757735 0 + T T A/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 A,T, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop,genotype-conflict 824 chr1 31347061 31347062 rs2282441 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 825.000000,4183.000000,4183.000000,825.000000, 0.082368,0.417632,0.417632,0.082368, maf-5-some-pop,genotype-conflict 824 chr1 31347398 31347399 rs4949184 0 + C C C/T genomic single unknown 0 0 missense exact 1 21 1000GENOMES,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3834.000000,1174.000000, 0.765575,0.234425, maf-5-some-pop,genotype-conflict 824 chr1 31351728 31351729 rs12134038 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,TISHKOFF, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 824 chr1 31354076 31354077 rs6695189 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop 824 chr1 31354379 31354380 rs16834127 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,genotype-conflict 824 chr1 31360941 31360942 rs2796209 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop 824 chr1 31362223 31362224 rs10753239 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3541.000000,1467.000000, 0.707069,0.292931, maf-5-some-pop,maf-5-all-pops,genotype-conflict 824 chr1 31367928 31367929 rs947650 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 824 chr1 31372685 31372686 rs7529390 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 582.000000,4426.000000, 0.116214,0.883786, maf-5-some-pop,genotype-conflict 824 chr1 31372733 31372734 rs12085929 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 794.000000,4214.000000, 0.158546,0.841454, maf-5-some-pop,genotype-conflict 824 chr1 31377742 31377743 rs4949324 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,maf-5-all-pops,genotype-conflict 824 chr1 31385186 31385187 rs4447027 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1376.000000,3632.000000, 0.274760,0.725240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 824 chr1 31385983 31385984 rs12059639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 824 chr1 31402147 31402148 rs4949186 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3719.000000,1289.000000, 0.742612,0.257388, maf-5-some-pop,maf-5-all-pops 824 chr1 31408055 31408056 rs7514514 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop 824 chr1 31412918 31412919 rs1473 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WIAF, 2 A,G, 577.000000,4431.000000, 0.115216,0.884784, maf-5-some-pop 824 chr1 31413971 31413972 rs3795433 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSMP,YUSUKE, 2 C,T, 615.000000,4393.000000, 0.122804,0.877196, maf-5-some-pop 824 chr1 31419886 31419887 rs6680401 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3885.000000,1123.000000, 0.775759,0.224241, maf-5-some-pop 824 chr1 31430431 31430432 rs4411170 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1227.000000,3781.000000, 0.245008,0.754992, maf-5-some-pop 824 chr1 31431175 31431176 rs4949188 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop 824 chr1 31440920 31440921 rs4317854 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop 824 chr1 31451143 31451144 rs12077530 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop 824 chr1 31455677 31455678 rs6700556 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2040.000000,2968.000000, 0.407348,0.592652, maf-5-some-pop,maf-5-all-pops 825 chr1 31461300 31461301 rs3737757 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4444.000000,564.000000, 0.887380,0.112620, maf-5-some-pop 825 chr1 31461437 31461438 rs947643 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2677.000000,2331.000000,2331.000000,2677.000000, 0.267272,0.232728,0.232728,0.267272, maf-5-some-pop,maf-5-all-pops 825 chr1 31463580 31463581 rs10798817 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3103.000000,1905.000000, 0.619609,0.380391, maf-5-some-pop 825 chr1 31464326 31464327 rs1999811 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3647.000000,1361.000000,1361.000000,3647.000000, 0.364117,0.135883,0.135883,0.364117, maf-5-some-pop,maf-5-all-pops 825 chr1 31464854 31464855 rs11578792 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop 825 chr1 31493478 31493479 rs7527893 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1208.000000,3800.000000, 0.241214,0.758786, maf-5-some-pop,genotype-conflict 825 chr1 31494474 31494475 rs10753242 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1921.000000,3087.000000, 0.383586,0.616414, maf-5-some-pop,maf-5-all-pops,microattr-tpa 825 chr1 31503690 31503691 rs4949332 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3796.000000,1212.000000, 0.757987,0.242013, maf-5-some-pop 825 chr1 31506003 31506004 rs4949333 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 970.000000,4038.000000, 0.193690,0.806310, maf-5-some-pop 825 chr1 31511003 31511004 rs7537241 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1322.000000,3686.000000, 0.263978,0.736022, maf-5-some-pop,maf-5-all-pops,genotype-conflict 825 chr1 31520294 31520295 rs7545143 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop 825 chr1 31522617 31522618 rs17342387 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,genotype-conflict 825 chr1 31523850 31523851 rs16834192 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 825 chr1 31546317 31546318 rs12076304 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops 825 chr1 31555265 31555266 rs6660628 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2888.000000,2120.000000, 0.576677,0.423323, maf-5-some-pop,maf-5-all-pops 825 chr1 31556941 31556942 rs6667217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2889.000000,2119.000000, 0.576877,0.423123, maf-5-some-pop,maf-5-all-pops 825 chr1 31557319 31557320 rs6667620 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1146.000000,3862.000000, 0.228834,0.771166, maf-5-some-pop 825 chr1 31560368 31560369 rs6659650 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 2872.000000,2136.000000, 0.573482,0.426518, maf-5-some-pop,maf-5-all-pops 825 chr1 31563980 31563981 rs6684148 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2146.000000,2862.000000, 0.428514,0.571486, maf-5-some-pop,maf-5-all-pops,genotype-conflict 825 chr1 31564011 31564012 rs6660518 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 2859.000000,2149.000000, 0.570887,0.429113, maf-5-some-pop,maf-5-all-pops 825 chr1 31564029 31564030 rs6673049 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 2861.000000,2147.000000, 0.571286,0.428714, maf-5-some-pop,maf-5-all-pops,genotype-conflict 825 chr1 31568792 31568793 rs10914267 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3872.000000,1136.000000, 0.773163,0.226837, maf-5-some-pop,genotype-conflict 825 chr1 31573884 31573885 rs3892049 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 825 chr1 31583343 31583344 rs10798823 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3710.000000,1298.000000, 0.740815,0.259185, maf-5-some-pop,maf-5-all-pops 826 chr1 31600475 31600476 rs6689316 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop 826 chr1 31602188 31602189 rs12062017 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3635.000000,1373.000000, 0.725839,0.274161, maf-5-some-pop,maf-5-all-pops 826 chr1 31602423 31602424 rs6685151 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop 826 chr1 31602925 31602926 rs6688296 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop 826 chr1 31603534 31603535 rs6691244 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1411.000000,3597.000000, 0.281749,0.718251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31606471 31606472 rs6425713 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4684.000000,324.000000, 0.935304,0.064696, maf-5-some-pop,genotype-conflict 826 chr1 31625388 31625389 rs12095326 0 + C C C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4409.000000,599.000000, 0.880391,0.119609, maf-5-some-pop 826 chr1 31633307 31633308 rs12088720 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop 826 chr1 31642814 31642815 rs2377783 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 452.000000,4556.000000,4556.000000,452.000000, 0.045128,0.454872,0.454872,0.045128, maf-5-some-pop 826 chr1 31650818 31650819 rs2153451 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2200.000000,2808.000000,2808.000000,2200.000000, 0.219649,0.280351,0.280351,0.219649, maf-5-some-pop,maf-5-all-pops 826 chr1 31653987 31653988 rs4949356 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2915.000000,2093.000000, 0.582069,0.417931, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31669802 31669803 rs10798826 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1841.000000,3167.000000, 0.367612,0.632388, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31670996 31670997 rs6665296 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,maf-5-all-pops 826 chr1 31671058 31671059 rs6677966 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1788.000000,3220.000000, 0.357029,0.642971, maf-5-some-pop,maf-5-all-pops 826 chr1 31673262 31673263 rs2377717 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3093.000000,1915.000000,1915.000000,3093.000000, 0.308806,0.191194,0.191194,0.308806, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31677632 31677633 rs12070271 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 826 chr1 31682379 31682380 rs2889710 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2569.000000,2439.000000,2439.000000,2569.000000, 0.256490,0.243510,0.243510,0.256490, maf-5-some-pop,maf-5-all-pops 826 chr1 31686084 31686085 rs12033154 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2042.000000,2966.000000, 0.407748,0.592252, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31687658 31687659 rs6680246 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1879.000000,3129.000000, 0.375200,0.624800, maf-5-some-pop,maf-5-all-pops 826 chr1 31688405 31688406 rs10914328 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1824.000000,3184.000000, 0.364217,0.635783, maf-5-some-pop,maf-5-all-pops 826 chr1 31690860 31690861 rs4949365 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 C,T, 2583.000000,2425.000000, 0.515775,0.484225, maf-5-some-pop,maf-5-all-pops 826 chr1 31691576 31691577 rs10914330 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3808.000000,1200.000000, 0.760383,0.239617, maf-5-some-pop,maf-5-all-pops 826 chr1 31692034 31692035 rs12755429 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop,genotype-conflict 826 chr1 31694102 31694103 rs6425717 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31700411 31700412 rs12087046 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3036.000000,1972.000000, 0.606230,0.393770, maf-5-some-pop,maf-5-all-pops 826 chr1 31701869 31701870 rs7534957 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,maf-5-all-pops,genotype-conflict 826 chr1 31701980 31701981 rs1107427 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 826 chr1 31704332 31704333 rs6699372 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop,maf-5-all-pops 826 chr1 31707856 31707857 rs12026718 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3852.000000,1156.000000, 0.769169,0.230831, maf-5-some-pop 826 chr1 31707970 31707971 rs6701667 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 2977.000000,2031.000000, 0.594449,0.405551, maf-5-some-pop,maf-5-all-pops 826 chr1 31709554 31709555 rs6425720 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2775.000000,2233.000000, 0.554113,0.445887, maf-5-some-pop,maf-5-all-pops 826 chr1 31713683 31713684 rs7544431 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop 826 chr1 31713851 31713852 rs4949368 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop 826 chr1 31717049 31717050 rs16834280 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 3 C,G,T, 3873.000000,1128.000000,7.000000, 0.773362,0.225240,0.001398, maf-5-some-pop 827 chr1 31722165 31722166 rs7549339 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1535.000000,3473.000000, 0.306510,0.693490, maf-5-some-pop,maf-5-all-pops 827 chr1 31722561 31722562 rs17440445 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop,genotype-conflict 827 chr1 31724743 31724744 rs7515867 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1208.000000,3800.000000, 0.241214,0.758786, maf-5-some-pop,genotype-conflict 827 chr1 31730085 31730086 rs924930 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1378.000000,3630.000000, 0.275160,0.724840, maf-5-some-pop,maf-5-all-pops,genotype-conflict 827 chr1 31731060 31731061 rs7515988 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2948.000000,2060.000000, 0.588658,0.411342, maf-5-some-pop,maf-5-all-pops 827 chr1 31731207 31731208 rs10753245 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2237.000000,2771.000000, 0.446685,0.553315, maf-5-some-pop,maf-5-all-pops 827 chr1 31735879 31735880 rs4949371 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 827 chr1 31736122 31736123 rs12725881 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1519.000000,3489.000000, 0.303315,0.696685, maf-5-some-pop,genotype-conflict 827 chr1 31740705 31740706 rs3753373 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3631.000000,1377.000000,1377.000000,3631.000000, 0.362520,0.137480,0.137480,0.362520, maf-5-some-pop,maf-5-all-pops 827 chr1 31769362 31769363 rs3737754 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,AFFY,GMI,KRIBB_YJKIM,KYUGEN,PERLEGEN,SSMP,YUSUKE, 2 C,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,genotype-conflict 827 chr1 31769751 31769752 rs41412349 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop 827 chr1 31774502 31774503 rs33917597 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 827 chr1 31776929 31776930 rs41367046 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 653.000000,4355.000000,4355.000000,653.000000, 0.065196,0.434804,0.434804,0.065196, maf-5-some-pop 827 chr1 31780209 31780210 rs16834362 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 548.000000,4460.000000, 0.109425,0.890575, maf-5-some-pop 827 chr1 31781278 31781279 rs4949203 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop,maf-5-all-pops 827 chr1 31787865 31787866 rs6679365 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2955.000000,2053.000000, 0.590056,0.409944, maf-5-some-pop,maf-5-all-pops 827 chr1 31788245 31788246 rs7533667 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3547.000000,1461.000000, 0.708267,0.291733, maf-5-some-pop,maf-5-all-pops 827 chr1 31788312 31788313 rs7523438 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 827 chr1 31788452 31788453 rs7556340 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2054.000000,2954.000000, 0.410144,0.589856, maf-5-some-pop,maf-5-all-pops 827 chr1 31791345 31791346 rs12024466 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 827 chr1 31796984 31796985 rs10914355 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops 827 chr1 31802787 31802788 rs6685960 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 546.000000,4462.000000, 0.109026,0.890974, maf-5-some-pop 827 chr1 31822635 31822636 rs10798845 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2052.000000,2956.000000, 0.409744,0.590256, maf-5-some-pop,maf-5-all-pops,genotype-conflict 827 chr1 31824022 31824023 rs4949389 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1507.000000,3501.000000, 0.300919,0.699081, maf-5-some-pop,genotype-conflict 827 chr1 31829872 31829873 rs3795432 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1494.000000,3514.000000,3514.000000,1494.000000, 0.149161,0.350839,0.350839,0.149161, maf-5-some-pop,maf-5-all-pops 827 chr1 31833705 31833706 rs4949391 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop,maf-5-all-pops 827 chr1 31837631 31837632 rs17495262 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop 827 chr1 31841618 31841619 rs7532845 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4353.000000,655.000000, 0.869209,0.130791, maf-5-some-pop,genotype-conflict 827 chr1 31842152 31842153 rs11578034 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,microattr-tpa 827 chr1 31842658 31842659 rs16834413 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,genotype-conflict 827 chr1 31844664 31844665 rs951545 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1117.000000,3891.000000,3891.000000,1117.000000, 0.111522,0.388478,0.388478,0.111522, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31850656 31850657 rs6425744 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1431.000000,3577.000000, 0.285743,0.714257, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31855473 31855474 rs1995585 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3676.000000,1332.000000, 0.734026,0.265974, maf-5-some-pop 828 chr1 31857997 31857998 rs10914372 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3667.000000,1341.000000, 0.732228,0.267772, maf-5-some-pop,maf-5-all-pops,microattr-tpa 828 chr1 31858066 31858067 rs12563669 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2674.000000,2334.000000, 0.533946,0.466054, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31858900 31858901 rs12122236 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1522.000000,3486.000000, 0.303914,0.696086, maf-5-some-pop,maf-5-all-pops 828 chr1 31862916 31862917 rs905929 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 828 chr1 31863557 31863558 rs7534378 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop 828 chr1 31863662 31863663 rs7534465 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1347.000000,3661.000000, 0.268970,0.731030, maf-5-some-pop,maf-5-all-pops 828 chr1 31869977 31869978 rs6425747 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1260.000000,3748.000000, 0.251597,0.748403, maf-5-some-pop,maf-5-all-pops 828 chr1 31880153 31880154 rs12691486 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,maf-5-all-pops 828 chr1 31881636 31881637 rs2839939 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2213.000000,2795.000000,2795.000000,2213.000000, 0.220946,0.279054,0.279054,0.220946, maf-5-some-pop,maf-5-all-pops 828 chr1 31883294 31883295 rs6701521 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2972.000000,2036.000000, 0.593450,0.406550, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31883474 31883475 rs4949208 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop 828 chr1 31884179 31884180 rs1934290 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2034.000000,2974.000000,2974.000000,2034.000000, 0.203075,0.296925,0.296925,0.203075, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31888679 31888680 rs6703368 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop 828 chr1 31894395 31894396 rs11589125 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop,maf-5-all-pops 828 chr1 31895393 31895394 rs12037108 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2938.000000,2070.000000, 0.586661,0.413339, maf-5-some-pop,maf-5-all-pops 828 chr1 31897257 31897258 rs1317252 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,GMI,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 4840.000000,168.000000,168.000000,4840.000000, 0.483227,0.016773,0.016773,0.483227, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31897292 31897293 rs1317251 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3381.000000,1627.000000,1627.000000,3381.000000, 0.337560,0.162440,0.162440,0.337560, maf-5-some-pop,maf-5-all-pops 828 chr1 31901651 31901652 rs2297884 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2904.000000,2104.000000,2104.000000,2904.000000, 0.289936,0.210064,0.210064,0.289936, maf-5-some-pop,maf-5-all-pops 828 chr1 31909071 31909072 rs10914386 0 + A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 3 A,C,G, 3106.000000,1871.000000,31.000000, 0.620208,0.373602,0.006190, maf-5-some-pop,maf-5-all-pops 828 chr1 31909123 31909124 rs10914387 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3106.000000,1902.000000, 0.620208,0.379792, maf-5-some-pop,maf-5-all-pops 828 chr1 31910481 31910482 rs6702129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2597.000000,2411.000000, 0.518570,0.481430, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31913963 31913964 rs4949406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 828 chr1 31915528 31915529 rs10914392 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop,maf-5-all-pops 828 chr1 31915676 31915677 rs10914393 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3120.000000,1888.000000, 0.623003,0.376997, maf-5-some-pop,maf-5-all-pops 828 chr1 31915980 31915981 rs7548985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2434.000000,2574.000000, 0.486022,0.513978, maf-5-some-pop,maf-5-all-pops 828 chr1 31916537 31916538 rs6674233 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1888.000000,3120.000000, 0.376997,0.623003, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31917820 31917821 rs2889750 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3120.000000,1888.000000,1888.000000,3120.000000, 0.311502,0.188498,0.188498,0.311502, maf-5-some-pop,maf-5-all-pops 828 chr1 31920245 31920246 rs11799701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SSMP, 2 A,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop 828 chr1 31921176 31921177 rs7546536 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1869.000000,3139.000000, 0.373203,0.626797, maf-5-some-pop,maf-5-all-pops 828 chr1 31921861 31921862 rs4261154 0 - G G C/T genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2751.000000,2257.000000,2257.000000,2751.000000, 0.274661,0.225339,0.225339,0.274661, maf-5-some-pop,maf-5-all-pops 828 chr1 31922033 31922034 rs6696930 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2319.000000,2689.000000, 0.463059,0.536941, maf-5-some-pop,maf-5-all-pops 828 chr1 31943342 31943343 rs1934299 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1760.000000,3248.000000,3248.000000,1760.000000, 0.175719,0.324281,0.324281,0.175719, maf-5-some-pop 828 chr1 31943354 31943355 rs7545865 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 828 chr1 31943496 31943497 rs10127812 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4459.000000,549.000000, 0.890375,0.109625, maf-5-some-pop 828 chr1 31955350 31955351 rs10914417 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1489.000000,3519.000000, 0.297324,0.702676, maf-5-some-pop,maf-5-all-pops 828 chr1 31955532 31955533 rs10798859 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1499.000000,3509.000000, 0.299321,0.700679, maf-5-some-pop,maf-5-all-pops 828 chr1 31972488 31972489 rs1316525 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3130.000000,1878.000000,1878.000000,3130.000000, 0.312500,0.187500,0.187500,0.312500, maf-5-some-pop,maf-5-all-pops 828 chr1 31973347 31973348 rs1574106 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2326.000000,2682.000000,2682.000000,2326.000000, 0.232228,0.267772,0.267772,0.232228, maf-5-some-pop,maf-5-all-pops 828 chr1 31973845 31973846 rs1320579 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2431.000000,2577.000000, 0.485423,0.514577, maf-5-some-pop,maf-5-all-pops 828 chr1 31973872 31973873 rs1320580 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2577.000000,2431.000000, 0.514577,0.485423, maf-5-some-pop,maf-5-all-pops,genotype-conflict 828 chr1 31975959 31975960 rs16834529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop 828 chr1 31977298 31977299 rs10158864 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1652.000000,3356.000000, 0.329872,0.670128, maf-5-some-pop,maf-5-all-pops 828 chr1 31977335 31977336 rs4949419 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 828 chr1 31977349 31977350 rs10914420 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1644.000000,3364.000000, 0.328275,0.671725, maf-5-some-pop,maf-5-all-pops 828 chr1 31979318 31979319 rs1317463 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2963.000000,2045.000000,2045.000000,2963.000000, 0.295827,0.204173,0.204173,0.295827, maf-5-some-pop,maf-5-all-pops 828 chr1 31979596 31979597 rs1890648 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,genotype-conflict 828 chr1 31980297 31980298 rs10914424 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1822.000000,3186.000000, 0.363818,0.636182, maf-5-some-pop,maf-5-all-pops 828 chr1 31981399 31981400 rs2377856 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 4655.000000,353.000000, 0.929513,0.070487, maf-5-some-pop 829 chr1 31982398 31982399 rs6697089 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,genotype-conflict 829 chr1 31982478 31982479 rs6684549 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 829 chr1 31982583 31982584 rs10914427 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 829 chr1 31991137 31991138 rs17443748 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 829 chr1 31992492 31992493 rs6667261 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1337.000000,3671.000000, 0.266973,0.733027, maf-5-some-pop,maf-5-all-pops 829 chr1 31996516 31996517 rs16834550 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4248.000000,760.000000, 0.848243,0.151757, maf-5-some-pop 829 chr1 31997792 31997793 rs6669615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2479.000000,2529.000000, 0.495008,0.504992, maf-5-some-pop,maf-5-all-pops,genotype-conflict 829 chr1 32004149 32004150 rs4072885 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1499.000000,3509.000000,3509.000000,1499.000000, 0.149661,0.350339,0.350339,0.149661, maf-5-some-pop,maf-5-all-pops 829 chr1 32008128 32008129 rs4447028 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3895.000000,1113.000000, 0.777756,0.222244, maf-5-some-pop 829 chr1 32009649 32009650 rs10798873 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop 829 chr1 32010144 32010145 rs1890651 0 - C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 829 chr1 32010589 32010590 rs4949434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,maf-5-all-pops 829 chr1 32012282 32012283 rs4949437 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2749.000000,2259.000000, 0.548922,0.451078, maf-5-some-pop,maf-5-all-pops 829 chr1 32012939 32012940 rs4949438 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop,maf-5-all-pops 829 chr1 32017992 32017993 rs4949213 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3000.000000,2008.000000, 0.599042,0.400958, maf-5-some-pop,maf-5-all-pops 829 chr1 32031671 32031672 rs2992028 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2440.000000,2568.000000, 0.487220,0.512780, maf-5-some-pop,maf-5-all-pops 829 chr1 32031842 32031843 rs2377894 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop,maf-5-all-pops 829 chr1 32033164 32033165 rs7521911 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 440.000000,4568.000000, 0.087859,0.912141, maf-5-some-pop 829 chr1 32034244 32034245 rs6425775 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop 829 chr1 32036926 32036927 rs9425884 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop 829 chr1 32038490 32038491 rs16834600 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 829 chr1 32048065 32048066 rs945212 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 83.000000,4925.000000,4925.000000,83.000000, 0.008287,0.491713,0.491713,0.008287, maf-5-some-pop 829 chr1 32054093 32054094 rs10914446 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop,maf-5-all-pops 829 chr1 32062065 32062066 rs4949448 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3909.000000,1099.000000, 0.780551,0.219449, maf-5-some-pop 829 chr1 32071673 32071674 rs10914449 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4682.000000,326.000000, 0.934904,0.065096, maf-5-some-pop 829 chr1 32072405 32072406 rs6664789 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2476.000000,2532.000000, 0.494409,0.505591, maf-5-some-pop,maf-5-all-pops 829 chr1 32081999 32082000 rs3753613 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3227.000000,1781.000000,1781.000000,3227.000000, 0.322185,0.177815,0.177815,0.322185, maf-5-some-pop 829 chr1 32085636 32085637 rs10914455 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 829 chr1 32092524 32092525 rs2271933 0 - A A C/T genomic single unknown 0 0 intron,missense exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,APPLERA_GI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,GSK-GENETICS,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2806.000000,2202.000000,2202.000000,2806.000000, 0.280152,0.219848,0.219848,0.280152, maf-5-some-pop,maf-5-all-pops,genotype-conflict 829 chr1 32094260 32094261 rs10914457 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1026.000000,3982.000000, 0.204872,0.795128, maf-5-some-pop,genotype-conflict 829 chr1 32099040 32099041 rs4949454 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop 829 chr1 32108546 32108547 rs10798882 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,maf-5-all-pops 829 chr1 32108578 32108579 rs7524405 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2587.000000,2421.000000, 0.516573,0.483427, maf-5-some-pop,maf-5-all-pops 830 chr1 32114792 32114793 rs4949455 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2571.000000,2437.000000, 0.513379,0.486621, maf-5-some-pop 830 chr1 32117778 32117779 rs2139539 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3251.000000,1757.000000, 0.649161,0.350839, maf-5-some-pop 830 chr1 32119430 32119431 rs3817398 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop,maf-5-all-pops 830 chr1 32124596 32124597 rs16834652 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4241.000000,767.000000, 0.846845,0.153155, maf-5-some-pop 830 chr1 32135334 32135335 rs7525091 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 136.000000,4872.000000, 0.027157,0.972843, maf-5-some-pop 830 chr1 32135772 32135773 rs2292989 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops,genotype-conflict 830 chr1 32136397 32136398 rs1474182 0 - G G C/T genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2098.000000,2910.000000,2910.000000,2098.000000, 0.209465,0.290535,0.290535,0.209465, maf-5-some-pop,maf-5-all-pops 830 chr1 32139063 32139064 rs16834667 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4681.000000,327.000000, 0.934704,0.065296, maf-5-some-pop 830 chr1 32139634 32139635 rs909002 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2897.000000,2111.000000, 0.578474,0.421526, maf-5-some-pop,maf-5-all-pops 830 chr1 32141572 32141573 rs6425779 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop 830 chr1 32142331 32142332 rs4949458 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2542.000000,2466.000000, 0.507588,0.492412, maf-5-some-pop,maf-5-all-pops 830 chr1 32143076 32143077 rs11584199 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 830 chr1 32143137 32143138 rs4949460 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2125.000000,2883.000000, 0.424321,0.575679, maf-5-some-pop 830 chr1 32146763 32146764 rs2297684 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2544.000000,2464.000000,2464.000000,2544.000000, 0.253994,0.246006,0.246006,0.253994, maf-5-some-pop,maf-5-all-pops,genotype-conflict 830 chr1 32152517 32152518 rs4568876 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2084.000000,2924.000000, 0.416134,0.583866, maf-5-some-pop,maf-5-all-pops 830 chr1 32155716 32155717 rs11589456 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 830 chr1 32160602 32160603 rs2275095 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4815.000000,193.000000,193.000000,4815.000000, 0.480731,0.019269,0.019269,0.480731, maf-5-some-pop 830 chr1 32165058 32165059 rs6657383 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops 830 chr1 32165494 32165495 rs2228552 0 - G G A/C genomic single unknown 0 0 missense exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WIAF-CSNP,YUSUKE, 4 A,C,G,T, 2140.000000,2868.000000,2868.000000,2140.000000, 0.213658,0.286342,0.286342,0.213658, maf-5-some-pop,genotype-conflict 830 chr1 32168878 32168879 rs10493049 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3796.000000,1212.000000, 0.757987,0.242013, maf-5-some-pop,genotype-conflict 830 chr1 32171816 32171817 rs16834694 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop 830 chr1 32171845 32171846 rs7518105 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 753.000000,4255.000000, 0.150359,0.849641, maf-5-some-pop 830 chr1 32172622 32172623 rs11811263 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 754.000000,4254.000000, 0.150559,0.849441, maf-5-some-pop 830 chr1 32177703 32177704 rs12072552 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1403.000000,3605.000000, 0.280152,0.719848, maf-5-some-pop,maf-5-all-pops,genotype-conflict 830 chr1 32177994 32177995 rs12405005 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3930.000000,1078.000000, 0.784744,0.215256, maf-5-some-pop,maf-5-all-pops 830 chr1 32178488 32178489 rs4949465 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1270.000000,3738.000000, 0.253594,0.746406, maf-5-some-pop,maf-5-all-pops 830 chr1 32178828 32178829 rs1401943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop 830 chr1 32191797 32191798 rs945211 0 - G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 830 chr1 32204062 32204063 rs2280387 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 830 chr1 32213654 32213655 rs12037019 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 789.000000,4219.000000, 0.157548,0.842452, maf-5-some-pop,genotype-conflict 830 chr1 32215177 32215178 rs12037400 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4052.000000,956.000000, 0.809105,0.190895, maf-5-some-pop 830 chr1 32231154 32231155 rs7543090 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop 830 chr1 32241332 32241333 rs630789 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1840.000000,3168.000000, 0.367412,0.632588, maf-5-some-pop,maf-5-all-pops,genotype-conflict 831 chr1 32252614 32252615 rs6656287 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop 831 chr1 32256085 32256086 rs13426 0 - T T A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1429.000000,3579.000000,3579.000000,1429.000000, 0.142672,0.357328,0.357328,0.142672, maf-5-some-pop,maf-5-all-pops,genotype-conflict 831 chr1 32266025 32266026 rs552124 0 + A A A/G genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1320.000000,3688.000000, 0.263578,0.736422, maf-5-some-pop,maf-5-all-pops 831 chr1 32281773 32281774 rs6701492 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 831 chr1 32293075 32293076 rs12749138 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3477.000000,1531.000000, 0.694289,0.305711, maf-5-some-pop,maf-5-all-pops 831 chr1 32296524 32296525 rs4949473 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop,maf-5-all-pops 831 chr1 32300129 32300130 rs11589992 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2457.000000,2551.000000, 0.490615,0.509385, maf-5-some-pop,maf-5-all-pops 831 chr1 32300952 32300953 rs6694544 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1068.000000,3940.000000, 0.213259,0.786741, maf-5-some-pop,genotype-conflict 831 chr1 32312697 32312698 rs16834744 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 831 chr1 32315550 32315551 rs7521293 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop,maf-5-all-pops 831 chr1 32320955 32320956 rs7516503 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop,maf-5-all-pops,genotype-conflict 831 chr1 32322732 32322733 rs12565681 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3428.000000,1580.000000, 0.684505,0.315495, maf-5-some-pop,maf-5-all-pops 831 chr1 32334476 32334477 rs2184203 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 1926.000000,3082.000000, 0.384585,0.615415, maf-5-some-pop,maf-5-all-pops 831 chr1 32336097 32336098 rs671101 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3187.000000,1821.000000, 0.636382,0.363618, maf-5-some-pop,maf-5-all-pops 831 chr1 32336783 32336784 rs11805047 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop,maf-5-all-pops 831 chr1 32348705 32348706 rs610368 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2931.000000,2077.000000, 0.585264,0.414736, maf-5-some-pop,maf-5-all-pops 831 chr1 32358696 32358697 rs681761 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 832 chr1 32427387 32427388 rs4949486 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop,genotype-conflict 832 chr1 32437267 32437268 rs624017 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,maf-5-all-pops 832 chr1 32438514 32438515 rs6687920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop 832 chr1 32450275 32450276 rs12067378 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 594.000000,4414.000000, 0.118610,0.881390, maf-5-some-pop 832 chr1 32456014 32456015 rs7541800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 832 chr1 32466330 32466331 rs16834799 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop,genotype-conflict 832 chr1 32492610 32492611 rs1807415 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 832 chr1 32497502 32497503 rs16834814 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop 832 chr1 32497792 32497793 rs6662484 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 832 chr1 32499346 32499347 rs16834836 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 833 chr1 32509401 32509402 rs12405056 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 833 chr1 32554267 32554268 rs16834860 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4240.000000,768.000000, 0.846645,0.153355, maf-5-some-pop 833 chr1 32554584 32554585 rs6672317 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop,maf-5-all-pops,genotype-conflict 833 chr1 32565114 32565115 rs16834877 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 771.000000,4237.000000, 0.153954,0.846046, maf-5-some-pop 833 chr1 32587004 32587005 rs12403328 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 G,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop 833 chr1 32595615 32595616 rs12070847 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop 833 chr1 32602530 32602531 rs16834895 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 833 chr1 32621238 32621239 rs16834897 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 834 chr1 32661058 32661059 rs16834922 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1265.000000,3743.000000, 0.252596,0.747404, maf-5-some-pop 834 chr1 32664865 32664866 rs16834926 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3925.000000,1083.000000, 0.783746,0.216254, maf-5-some-pop 834 chr1 32677211 32677212 rs35178513 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4121.000000,887.000000, 0.822883,0.177117, maf-5-some-pop 834 chr1 32686593 32686594 rs3738001 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3532.000000,1476.000000,1476.000000,3532.000000, 0.352636,0.147364,0.147364,0.352636, maf-5-some-pop,genotype-conflict 834 chr1 32689416 32689417 rs16834930 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 834 chr1 32689856 32689857 rs589034 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1962.000000,3046.000000, 0.391773,0.608227, maf-5-some-pop,maf-5-all-pops 834 chr1 32697933 32697934 rs747020 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TSC-CSHL, 2 A,G, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop,genotype-conflict 834 chr1 32699226 32699227 rs587707 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 70.000000,4938.000000,4938.000000,70.000000, 0.006989,0.493011,0.493011,0.006989, maf-5-some-pop 834 chr1 32705114 32705115 rs7544661 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop,genotype-conflict 834 chr1 32711359 32711360 rs669538 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,genotype-conflict 834 chr1 32743865 32743866 rs695161 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3501.000000,1507.000000,1507.000000,3501.000000, 0.349541,0.150459,0.150459,0.349541, maf-5-some-pop 834 chr1 32746388 32746389 rs41510850 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 344.000000,4664.000000,4664.000000,344.000000, 0.034345,0.465655,0.465655,0.034345, maf-5-some-pop,maf-5-all-pops 834 chr1 32766291 32766292 rs7543692 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop 835 chr1 32784953 32784954 rs16834954 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 531.000000,4477.000000, 0.106030,0.893970, maf-5-some-pop,genotype-conflict 835 chr1 32798133 32798134 rs6697130 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,genotype-conflict 835 chr1 32816270 32816271 rs689905 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 153.000000,4855.000000,4855.000000,153.000000, 0.015276,0.484724,0.484724,0.015276, maf-5-some-pop 835 chr1 32826792 32826793 rs7532909 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 275.000000,4733.000000, 0.054912,0.945088, maf-5-some-pop 835 chr1 32829280 32829281 rs2270537 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 11 1000GENOMES,AFFY,CANCER-GENOME,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,YUSUKE, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop 835 chr1 32831542 32831543 rs476153 0 - C C A/C/G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 SingleClassQuadAllelic 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SEQUENOM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4743.000000,265.000000,265.000000,4743.000000, 0.473542,0.026458,0.026458,0.473542, maf-5-some-pop 835 chr1 32832291 32832292 rs2273376 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,YUSUKE, 2 A,G, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 835 chr1 32858279 32858280 rs16834970 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop 835 chr1 32862796 32862797 rs9970917 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop 835 chr1 32865495 32865496 rs41453352 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,AFFY_GWHS,ILLUMINA,ILLUMINA-UK, 4 A,C,G,T, 4945.000000,63.000000,63.000000,4945.000000, 0.493710,0.006290,0.006290,0.493710, maf-5-some-pop,maf-5-all-pops 835 chr1 32868272 32868273 rs16834976 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,genotype-conflict 835 chr1 32878908 32878909 rs7549871 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop 835 chr1 32878962 32878963 rs7538479 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop,genotype-conflict 835 chr1 32879585 32879586 rs10914555 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop,genotype-conflict 835 chr1 32889222 32889223 rs10493051 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 4 A,C,G,T, 249.000000,4759.000000,4759.000000,249.000000, 0.024860,0.475140,0.475140,0.024860, maf-5-some-pop 835 chr1 32890940 32890941 rs6682924 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop 835 chr1 32893552 32893553 rs9803844 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 835 chr1 32896118 32896119 rs12140148 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop,maf-5-all-pops 836 chr1 32915043 32915044 rs10914561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop,maf-5-all-pops 836 chr1 32934241 32934242 rs10914564 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 553.000000,4455.000000, 0.110423,0.889577, maf-5-some-pop,maf-5-all-pops 836 chr1 32942661 32942662 rs4970524 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 836 chr1 32955924 32955925 rs16834996 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 836 chr1 32973270 32973271 rs12141725 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,genotype-conflict 836 chr1 32973917 32973918 rs12142700 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 284.000000,4724.000000, 0.056709,0.943291, maf-5-some-pop 836 chr1 32993521 32993522 rs16835005 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,genotype-conflict 836 chr1 32994585 32994586 rs10914574 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop,genotype-conflict 836 chr1 33001089 33001090 rs1149058 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 836 chr1 33004009 33004010 rs2095761 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 837 chr1 33030460 33030461 rs11588497 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3405.000000,1603.000000, 0.679912,0.320088, maf-5-some-pop,maf-5-all-pops,microattr-tpa 837 chr1 33032411 33032412 rs9425886 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1605.000000,3403.000000, 0.320487,0.679513, maf-5-some-pop,maf-5-all-pops 837 chr1 33065483 33065484 rs704887 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1856.000000,3152.000000, 0.370607,0.629393, maf-5-some-pop,maf-5-all-pops 837 chr1 33073534 33073535 rs12565354 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop 837 chr1 33082730 33082731 rs11812076 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 837 chr1 33084665 33084666 rs12041844 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 36.000000,4972.000000, 0.007188,0.992812, maf-5-some-pop 837 chr1 33085243 33085244 rs16835041 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 391.000000,4617.000000, 0.078075,0.921925, maf-5-some-pop,genotype-conflict 837 chr1 33086623 33086624 rs6661217 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, 837 chr1 33087436 33087437 rs3753603 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 887.000000,4121.000000,4121.000000,887.000000, 0.088558,0.411442,0.411442,0.088558, maf-5-some-pop 837 chr1 33093007 33093008 rs12089920 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop 837 chr1 33098467 33098468 rs377742 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 18.000000,4990.000000,4990.000000,18.000000, 0.001797,0.498203,0.498203,0.001797, 837 chr1 33107555 33107556 rs4951777 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,genotype-conflict 837 chr1 33119592 33119593 rs2934766 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop 837 chr1 33133967 33133968 rs2762904 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop 837 chr1 33142693 33142694 rs1136258 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 837 chr1 33147142 33147143 rs360510 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4848.000000,160.000000,160.000000,4848.000000, 0.484026,0.015974,0.015974,0.484026, maf-5-some-pop 837 chr1 33160509 33160510 rs397205 0 + C C C/T genomic single unknown 0 0 missense exact 1 12 1000GENOMES,AFFY,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,genotype-conflict 837 chr1 33160877 33160878 rs360042 0 + C C C/T genomic single unknown 0 0 missense exact 1 31 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 688.000000,4320.000000, 0.137380,0.862620, maf-5-some-pop,genotype-conflict 838 chr1 33166886 33166887 rs786302 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 838 chr1 33169484 33169485 rs360506 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 158.000000,4850.000000, 0.031550,0.968450, maf-5-some-pop,genotype-conflict 838 chr1 33170412 33170413 rs9425961 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2039.000000,2969.000000, 0.407149,0.592851, maf-5-some-pop,maf-5-all-pops 838 chr1 33179155 33179156 rs419145 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,genotype-conflict 838 chr1 33184635 33184636 rs359948 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 838 chr1 33185310 33185311 rs359949 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 838 chr1 33190123 33190124 rs785694 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop 838 chr1 33194671 33194672 rs655552 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop 838 chr1 33199366 33199367 rs699006 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2285.000000,2723.000000, 0.456270,0.543730, maf-5-some-pop,maf-5-all-pops 838 chr1 33203200 33203201 rs634759 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop 838 chr1 33203460 33203461 rs2184931 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop,genotype-conflict 838 chr1 33221281 33221282 rs360490 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1240.000000,3768.000000,3768.000000,1240.000000, 0.123802,0.376198,0.376198,0.123802, maf-5-some-pop,maf-5-all-pops,genotype-conflict 838 chr1 33233222 33233223 rs4951771 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops,genotype-conflict 838 chr1 33238713 33238714 rs10914610 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,AFFY,CORNELL,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,maf-5-all-pops 838 chr1 33256644 33256645 rs881393 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 838 chr1 33277079 33277080 rs10914621 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 C,T, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop,maf-5-all-pops,genotype-conflict 838 chr1 33280647 33280648 rs12760548 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF, 2 G,T, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop,maf-5-all-pops,genotype-conflict 839 chr1 33298821 33298822 rs10914625 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 1562.000000,3446.000000, 0.311901,0.688099, maf-5-some-pop,genotype-conflict 839 chr1 33314295 33314296 rs702834 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 839 chr1 33324135 33324136 rs9500 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3379.000000,1629.000000, 0.674720,0.325280, maf-5-some-pop,maf-5-all-pops 839 chr1 33326171 33326172 rs1300114 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 A,G, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop 839 chr1 33326680 33326681 rs16835198 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 3458.000000,1550.000000, 0.690495,0.309505, maf-5-some-pop,genotype-conflict 839 chr1 33335038 33335039 rs1746661 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,YUSUKE, 2 G,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop 839 chr1 33347180 33347181 rs1796771 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 4700.000000,308.000000,308.000000,4700.000000, 0.469249,0.030751,0.030751,0.469249, maf-5-some-pop 839 chr1 33353595 33353596 rs942244 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4159.000000,849.000000, 0.830471,0.169529, maf-5-some-pop,genotype-conflict 839 chr1 33355922 33355923 rs1284373 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,YUSUKE, 2 C,T, 4181.000000,827.000000, 0.834864,0.165136, maf-5-some-pop 839 chr1 33360233 33360234 rs1053542 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,CGAP-GAI,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE, 4 A,C,G,T, 256.000000,4752.000000,4752.000000,256.000000, 0.025559,0.474441,0.474441,0.025559, maf-5-some-pop 839 chr1 33380107 33380108 rs7527330 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 535.000000,4473.000000, 0.106829,0.893171, maf-5-some-pop 839 chr1 33405971 33405972 rs194641 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 4061.000000,947.000000,947.000000,4061.000000, 0.405451,0.094549,0.094549,0.405451, maf-5-some-pop 839 chr1 33421460 33421461 rs194655 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 4000.000000,1008.000000,1008.000000,4000.000000, 0.399361,0.100639,0.100639,0.399361, maf-5-some-pop 840 chr1 33426669 33426670 rs979383 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,T, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop,maf-5-all-pops 840 chr1 33427319 33427320 rs194660 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 4006.000000,1002.000000,1002.000000,4006.000000, 0.399960,0.100040,0.100040,0.399960, maf-5-some-pop 840 chr1 33437041 33437042 rs194663 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1884.000000,3124.000000,3124.000000,1884.000000, 0.188099,0.311901,0.311901,0.188099, maf-5-some-pop,maf-5-all-pops 840 chr1 33443063 33443064 rs735402 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 856.000000,4152.000000,4152.000000,856.000000, 0.085463,0.414537,0.414537,0.085463, maf-5-some-pop,genotype-conflict 840 chr1 33444134 33444135 rs16835227 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3308.000000,1700.000000, 0.660543,0.339457, maf-5-some-pop,maf-5-all-pops,genotype-conflict 840 chr1 33448346 33448347 rs4376697 0 + T T A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 3 A,G,T, 6.000000,4845.000000,157.000000, 0.001198,0.967452,0.031350, maf-5-some-pop,genotype-conflict 840 chr1 33448508 33448509 rs17511157 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 840 chr1 33450631 33450632 rs17511198 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop 840 chr1 33459483 33459484 rs10914639 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop 840 chr1 33460870 33460871 rs10737365 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3168.000000,1840.000000, 0.632588,0.367412, maf-5-some-pop 840 chr1 33469273 33469274 rs11810032 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 840 chr1 33475790 33475791 rs6884 0 - A A C/T genomic single by-hapmap 0.464077 0.129116 ncRNA,untranslated-3 exact 1 26 ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SEQUENOM,SI_EXO,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 781.000000,1353.000000, 0.365979,0.634021, maf-5-some-pop,maf-5-all-pops 840 chr1 33478562 33478563 rs13376642 0 + C C C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,genotype-conflict 840 chr1 33485136 33485137 rs11799675 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop 840 chr1 33490421 33490422 rs10914647 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP, 2 A,G, 1110.000000,3898.000000, 0.221645,0.778355, maf-5-some-pop 840 chr1 33496296 33496297 rs10914648 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 840 chr1 33496638 33496639 rs10753271 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3896.000000,1112.000000, 0.777955,0.222045, maf-5-some-pop 840 chr1 33510269 33510270 rs10753272 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,C, 3901.000000,1107.000000, 0.778954,0.221046, maf-5-some-pop,genotype-conflict 840 chr1 33513351 33513352 rs6682377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1831.000000,3177.000000, 0.365615,0.634385, maf-5-some-pop,maf-5-all-pops 840 chr1 33528177 33528178 rs12074932 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop 840 chr1 33543620 33543621 rs1054059 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SSMP, 4 A,C,G,T, 1016.000000,3992.000000,3992.000000,1016.000000, 0.101438,0.398562,0.398562,0.101438, maf-5-some-pop 840 chr1 33546320 33546321 rs6684089 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 840 chr1 33551777 33551778 rs12060631 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3094.000000,1914.000000, 0.617812,0.382188, maf-5-some-pop,maf-5-all-pops,genotype-conflict 841 chr1 33558319 33558320 rs7355131 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop 841 chr1 33562415 33562416 rs16835244 0 + G G G/T genomic single unknown 0 0 missense exact 1 10 1000GENOMES,AFFY,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 G,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 841 chr1 33565512 33565513 rs804429 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 2 A,G, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop 841 chr1 33585069 33585070 rs638130 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3502.000000,1506.000000, 0.699281,0.300719, maf-5-some-pop,maf-5-all-pops,genotype-conflict 841 chr1 33589315 33589316 rs607355 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4672.000000,336.000000,336.000000,4672.000000, 0.466454,0.033546,0.033546,0.466454, maf-5-some-pop 841 chr1 33591945 33591946 rs6693621 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop 841 chr1 33595211 33595212 rs84314 0 + T T G/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3002.000000,2006.000000, 0.599441,0.400559, maf-5-some-pop 841 chr1 33595288 33595289 rs3888717 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3908.000000,1100.000000, 0.780351,0.219649, maf-5-some-pop 841 chr1 33599914 33599915 rs654947 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1393.000000,3615.000000, 0.278155,0.721845, maf-5-some-pop,maf-5-all-pops 841 chr1 33600030 33600031 rs7552729 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 841 chr1 33600114 33600115 rs17542433 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 841 chr1 33600171 33600172 rs12035312 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop,genotype-conflict 841 chr1 33600194 33600195 rs12045725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop 841 chr1 33609210 33609211 rs646071 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4847.000000,161.000000,161.000000,4847.000000, 0.483926,0.016074,0.016074,0.483926, maf-5-some-pop 841 chr1 33614161 33614162 rs3912145 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops,genotype-conflict 841 chr1 33615607 33615608 rs12089556 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop 841 chr1 33622076 33622077 rs676069 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,genotype-conflict 841 chr1 33626603 33626604 rs6678330 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 841 chr1 33637232 33637233 rs597066 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,genotype-conflict 841 chr1 33638735 33638736 rs587042 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 841 chr1 33640702 33640703 rs784770 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSMP,TISHKOFF, 2 C,T, 4021.000000,987.000000, 0.802915,0.197085, maf-5-some-pop,maf-5-all-pops 841 chr1 33641931 33641932 rs604941 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 841 chr1 33642787 33642788 rs16835286 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop,genotype-conflict 841 chr1 33643360 33643361 rs587910 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 1257.000000,3751.000000, 0.250998,0.749002, maf-5-some-pop,maf-5-all-pops,genotype-conflict 841 chr1 33645970 33645971 rs636561 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,maf-5-all-pops,genotype-conflict 841 chr1 33669003 33669004 rs606403 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3439.000000,1569.000000,1569.000000,3439.000000, 0.343351,0.156649,0.156649,0.343351, maf-5-some-pop,maf-5-all-pops,genotype-conflict 841 chr1 33673558 33673559 rs9729837 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 3508.000000,1500.000000, 0.700479,0.299521, maf-5-some-pop,maf-5-all-pops 841 chr1 33676472 33676473 rs4634870 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop 841 chr1 33678474 33678475 rs10914665 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1566.000000,3442.000000, 0.312700,0.687300, maf-5-some-pop,maf-5-all-pops 842 chr1 33686397 33686398 rs16835313 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop 842 chr1 33687319 33687320 rs17465854 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop 842 chr1 33691950 33691951 rs10737366 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 842 chr1 33697439 33697440 rs12028496 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,G, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop 842 chr1 33699913 33699914 rs12023940 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1319.000000,3689.000000, 0.263379,0.736621, maf-5-some-pop,maf-5-all-pops 842 chr1 33700649 33700650 rs937429 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 112.000000,4896.000000,4896.000000,112.000000, 0.011182,0.488818,0.488818,0.011182, maf-5-some-pop 842 chr1 33702964 33702965 rs6425809 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,genotype-conflict 842 chr1 33710428 33710429 rs7534724 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1236.000000,3772.000000, 0.246805,0.753195, maf-5-some-pop,maf-5-all-pops 842 chr1 33710629 33710630 rs7534920 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop 842 chr1 33717366 33717367 rs4653346 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4964.000000,44.000000, 0.991214,0.008786, maf-5-some-pop 842 chr1 33718030 33718031 rs6694356 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,genotype-conflict 842 chr1 33724194 33724195 rs4653349 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 842 chr1 33724894 33724895 rs6670552 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1132.000000,3876.000000, 0.226038,0.773962, maf-5-some-pop,maf-5-all-pops 842 chr1 33733367 33733368 rs4297253 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 842 chr1 33740817 33740818 rs6425814 0 + A A A/C genomic single unknown 0 0 intron,untranslated-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop 842 chr1 33751102 33751103 rs7526544 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2286.000000,2722.000000, 0.456470,0.543530, maf-5-some-pop,maf-5-all-pops 842 chr1 33755542 33755543 rs12748225 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3935.000000,1073.000000, 0.785743,0.214257, maf-5-some-pop,maf-5-all-pops 842 chr1 33760196 33760197 rs12723104 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop 842 chr1 33764060 33764061 rs4440822 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 C,T, 4128.000000,880.000000, 0.824281,0.175719, maf-5-some-pop 842 chr1 33766705 33766706 rs7523119 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops 842 chr1 33767227 33767228 rs10914678 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3083.000000,1925.000000, 0.615615,0.384385, maf-5-some-pop,maf-5-all-pops,genotype-conflict 842 chr1 33767289 33767290 rs10798937 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 842 chr1 33767824 33767825 rs11580147 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,C, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop 842 chr1 33777523 33777524 rs6679416 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3631.000000,1377.000000, 0.725040,0.274960, maf-5-some-pop,maf-5-all-pops 842 chr1 33788883 33788884 rs7542777 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,G, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop,genotype-conflict 842 chr1 33789637 33789638 rs10914683 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,AFFY,CGAP-GAI,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,genotype-conflict 842 chr1 33795052 33795053 rs16835363 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 842 chr1 33795571 33795572 rs10914684 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop 842 chr1 33796080 33796081 rs4653044 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2624.000000,2384.000000, 0.523962,0.476038, maf-5-some-pop,maf-5-all-pops 842 chr1 33796228 33796229 rs7512470 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop 842 chr1 33803170 33803171 rs6696096 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops,genotype-conflict 843 chr1 33819813 33819814 rs4653080 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1945.000000,3063.000000, 0.388379,0.611621, maf-5-some-pop,maf-5-all-pops 843 chr1 33819829 33819830 rs4653081 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1358.000000,3650.000000, 0.271166,0.728834, maf-5-some-pop,maf-5-all-pops 843 chr1 33823268 33823269 rs6678247 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3641.000000,1367.000000, 0.727037,0.272963, maf-5-some-pop,maf-5-all-pops,genotype-conflict 843 chr1 33829936 33829937 rs7545146 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop,maf-5-all-pops 843 chr1 33839540 33839541 rs10429859 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop,genotype-conflict 843 chr1 33850889 33850890 rs12127097 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, maf-5-some-pop 843 chr1 33853307 33853308 rs11581218 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop,genotype-conflict 843 chr1 33855822 33855823 rs942485 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1358.000000,3650.000000,3650.000000,1358.000000, 0.135583,0.364417,0.364417,0.135583, maf-5-some-pop,maf-5-all-pops 843 chr1 33857106 33857107 rs16835424 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop,genotype-conflict 843 chr1 33858795 33858796 rs12043842 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop 843 chr1 33858872 33858873 rs10798945 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1224.000000,3784.000000, 0.244409,0.755591, maf-5-some-pop 843 chr1 33862516 33862517 rs4652871 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1367.000000,3641.000000, 0.272963,0.727037, maf-5-some-pop,maf-5-all-pops,genotype-conflict 843 chr1 33863695 33863696 rs12068367 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 843 chr1 33865067 33865068 rs6685849 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4348.000000,660.000000, 0.868211,0.131789, maf-5-some-pop 843 chr1 33872592 33872593 rs6661037 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1731.000000,3277.000000, 0.345647,0.654353, maf-5-some-pop,maf-5-all-pops 843 chr1 33872974 33872975 rs7514303 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 843 chr1 33880812 33880813 rs4503314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3837.000000,1171.000000, 0.766174,0.233826, maf-5-some-pop,maf-5-all-pops 843 chr1 33886887 33886888 rs10914706 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1171.000000,3837.000000, 0.233826,0.766174, maf-5-some-pop,maf-5-all-pops 843 chr1 33893289 33893290 rs1998623 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 855.000000,4153.000000,4153.000000,855.000000, 0.085363,0.414637,0.414637,0.085363, maf-5-some-pop 843 chr1 33893829 33893830 rs4653135 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop 843 chr1 33899013 33899014 rs11590395 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop 843 chr1 33899701 33899702 rs10798948 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3451.000000,1557.000000, 0.689097,0.310903, maf-5-some-pop,maf-5-all-pops 843 chr1 33900149 33900150 rs11590975 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,T, 856.000000,4152.000000, 0.170927,0.829073, maf-5-some-pop 843 chr1 33902509 33902510 rs10914715 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop 843 chr1 33904608 33904609 rs12047904 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop 843 chr1 33904683 33904684 rs16835469 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1794.000000,3214.000000, 0.358227,0.641773, maf-5-some-pop,maf-5-all-pops,genotype-conflict 843 chr1 33905229 33905230 rs10914716 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop,genotype-conflict 843 chr1 33905876 33905877 rs1570686 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 847.000000,4161.000000, 0.169129,0.830871, maf-5-some-pop 843 chr1 33906787 33906788 rs10914718 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3343.000000,1665.000000, 0.667532,0.332468, maf-5-some-pop,maf-5-all-pops 843 chr1 33906841 33906842 rs12025000 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 843 chr1 33910141 33910142 rs10914725 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop 843 chr1 33911646 33911647 rs12564600 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4410.000000,598.000000, 0.880591,0.119409, maf-5-some-pop 843 chr1 33920585 33920586 rs12032996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 843 chr1 33925966 33925967 rs10914729 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop,maf-5-all-pops,genotype-conflict 843 chr1 33934823 33934824 rs10914731 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4019.000000,989.000000, 0.802516,0.197484, maf-5-some-pop 843 chr1 33936346 33936347 rs6425820 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3181.000000,1827.000000, 0.635184,0.364816, maf-5-some-pop,maf-5-all-pops 843 chr1 33937134 33937135 rs10798953 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop,maf-5-all-pops,genotype-conflict 843 chr1 33941004 33941005 rs16835499 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop 843 chr1 33945191 33945192 rs16835507 0 + T T A/T genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,AFFY,APPLERA_GI,BL,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,T, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop 843 chr1 33945684 33945685 rs10493052 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 483.000000,4525.000000,4525.000000,483.000000, 0.048223,0.451777,0.451777,0.048223, maf-5-some-pop,microattr-tpa 844 chr1 33954351 33954352 rs3795418 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1233.000000,3775.000000, 0.246206,0.753794, maf-5-some-pop,maf-5-all-pops 844 chr1 33960061 33960062 rs9943259 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1239.000000,3769.000000, 0.247404,0.752596, maf-5-some-pop,maf-5-all-pops 844 chr1 33968433 33968434 rs1341712 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2038.000000,523.000000, 0.795783,0.204217, maf-5-some-pop,maf-5-all-pops 844 chr1 33968895 33968896 rs11810916 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 A,C, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,genotype-conflict 844 chr1 33973150 33973151 rs12049021 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 979.000000,4029.000000, 0.195487,0.804513, maf-5-some-pop,genotype-conflict 844 chr1 33981017 33981018 rs2641957 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 27 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2250.000000,2758.000000, 0.449281,0.550719, maf-5-some-pop,maf-5-all-pops 844 chr1 33981229 33981230 rs2794600 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3736.000000,1272.000000,1272.000000,3736.000000, 0.373003,0.126997,0.126997,0.373003, maf-5-some-pop,maf-5-all-pops 844 chr1 33983018 33983019 rs10798959 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops,microattr-tpa 844 chr1 33985832 33985833 rs1690557 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3323.000000,1685.000000, 0.663538,0.336462, maf-5-some-pop,maf-5-all-pops 844 chr1 33986848 33986849 rs3795421 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 844 chr1 34000486 34000487 rs2641952 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1915.000000,3093.000000, 0.382388,0.617612, maf-5-some-pop,maf-5-all-pops 844 chr1 34001334 34001335 rs2641953 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1937.000000,3071.000000, 0.386781,0.613219, maf-5-some-pop,maf-5-all-pops,genotype-conflict 844 chr1 34001437 34001438 rs10914739 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4015.000000,993.000000, 0.801717,0.198283, maf-5-some-pop 844 chr1 34002141 34002142 rs16835557 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1180.000000,3828.000000, 0.235623,0.764377, maf-5-some-pop,maf-5-all-pops,genotype-conflict 844 chr1 34007350 34007351 rs1773026 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3237.000000,1771.000000, 0.646366,0.353634, maf-5-some-pop 844 chr1 34007885 34007886 rs1000417 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 4023.000000,985.000000, 0.803315,0.196685, maf-5-some-pop 844 chr1 34011151 34011152 rs2641964 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1165.000000,3843.000000,3843.000000,1165.000000, 0.116314,0.383686,0.383686,0.116314, maf-5-some-pop 844 chr1 34013146 34013147 rs6425825 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 983.000000,4025.000000, 0.196286,0.803714, maf-5-some-pop 844 chr1 34013296 34013297 rs6425826 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops,genotype-conflict 844 chr1 34013392 34013393 rs12083828 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop,genotype-conflict 844 chr1 34016218 34016219 rs1493993 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3822.000000,1186.000000, 0.763179,0.236821, maf-5-some-pop,maf-5-all-pops 844 chr1 34016278 34016279 rs292812 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,KWOK,SC_JCM, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 844 chr1 34025029 34025030 rs16835593 0 + A A A/G genomic single unknown 0 0 coding-synon,intron exact 1 13 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 A,G, 4407.000000,601.000000, 0.879992,0.120008, maf-5-some-pop,genotype-conflict 844 chr1 34026672 34026673 rs2336245 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 844 chr1 34027493 34027494 rs12122667 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop,genotype-conflict 844 chr1 34028429 34028430 rs1493995 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 290.000000,4718.000000,4718.000000,290.000000, 0.028954,0.471046,0.471046,0.028954, maf-5-some-pop,genotype-conflict 844 chr1 34030165 34030166 rs1389561 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 844 chr1 34030840 34030841 rs6693247 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,maf-5-all-pops 844 chr1 34034648 34034649 rs5007951 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1105.000000,3903.000000, 0.220647,0.779353, maf-5-some-pop,maf-5-all-pops 844 chr1 34035514 34035515 rs11590251 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,T, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop 844 chr1 34035560 34035561 rs1690551 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2635.000000,2373.000000,2373.000000,2635.000000, 0.263079,0.236921,0.236921,0.263079, maf-5-some-pop,maf-5-all-pops 844 chr1 34038943 34038944 rs12129692 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4026.000000,982.000000, 0.803914,0.196086, maf-5-some-pop,maf-5-all-pops 844 chr1 34039273 34039274 rs10798965 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop,maf-5-all-pops 844 chr1 34041190 34041191 rs6701268 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 862.000000,4146.000000, 0.172125,0.827875, maf-5-some-pop 844 chr1 34041203 34041204 rs16835609 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop 844 chr1 34041784 34041785 rs16835611 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 589.000000,4419.000000, 0.117612,0.882388, maf-5-some-pop,genotype-conflict 844 chr1 34041885 34041886 rs6425829 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3456.000000,1552.000000, 0.690096,0.309904, maf-5-some-pop,maf-5-all-pops 844 chr1 34042746 34042747 rs11804400 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,genotype-conflict 844 chr1 34042809 34042810 rs1389560 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3260.000000,1748.000000,1748.000000,3260.000000, 0.325479,0.174521,0.174521,0.325479, maf-5-some-pop,maf-5-all-pops 844 chr1 34042833 34042834 rs16835628 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 A,C, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop,genotype-conflict 844 chr1 34042857 34042858 rs1389559 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 204.000000,4804.000000,4804.000000,204.000000, 0.020367,0.479633,0.479633,0.020367, maf-5-some-pop 844 chr1 34044615 34044616 rs6425830 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,maf-5-all-pops 844 chr1 34046033 34046034 rs1773031 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 114.000000,4894.000000,4894.000000,114.000000, 0.011382,0.488618,0.488618,0.011382, maf-5-some-pop 844 chr1 34046065 34046066 rs292809 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2849.000000,2159.000000,2159.000000,2849.000000, 0.284445,0.215555,0.215555,0.284445, maf-5-some-pop,maf-5-all-pops 844 chr1 34046645 34046646 rs292808 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1876.000000,3132.000000,3132.000000,1876.000000, 0.187300,0.312700,0.312700,0.187300, maf-5-some-pop 844 chr1 34048267 34048268 rs416391 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop,microattr-tpa 844 chr1 34048280 34048281 rs389724 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1081.000000,3927.000000, 0.215855,0.784145, maf-5-some-pop 844 chr1 34048742 34048743 rs433546 0 + A A A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1260.000000,3748.000000, 0.251597,0.748403, maf-5-some-pop 844 chr1 34050843 34050844 rs2781789 0 + C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop,maf-5-all-pops,genotype-conflict 844 chr1 34051241 34051242 rs11586497 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4224.000000,784.000000, 0.843450,0.156550, maf-5-some-pop,genotype-conflict 844 chr1 34051435 34051436 rs721306 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2548.000000,2460.000000,2460.000000,2548.000000, 0.254393,0.245607,0.245607,0.254393, maf-5-some-pop,maf-5-all-pops 844 chr1 34051664 34051665 rs2077821 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 112.000000,4896.000000,4896.000000,112.000000, 0.011182,0.488818,0.488818,0.011182, maf-5-some-pop 844 chr1 34052271 34052272 rs16835645 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,genotype-conflict 844 chr1 34052402 34052403 rs6425831 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 844 chr1 34057213 34057214 rs41371344 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 544.000000,4464.000000, 0.108626,0.891374, maf-5-some-pop 844 chr1 34057452 34057453 rs1473794 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3280.000000,1728.000000, 0.654952,0.345048, maf-5-some-pop,maf-5-all-pops 844 chr1 34058910 34058911 rs16835654 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop 844 chr1 34061897 34061898 rs4653250 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4077.000000,931.000000, 0.814097,0.185903, maf-5-some-pop,genotype-conflict 844 chr1 34070825 34070826 rs12733436 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2722.000000,2286.000000, 0.543530,0.456470, maf-5-some-pop,maf-5-all-pops,genotype-conflict 844 chr1 34071433 34071434 rs1874044 0 + C C C/T genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2365.000000,2643.000000, 0.472244,0.527756, maf-5-some-pop,maf-5-all-pops,genotype-conflict 844 chr1 34073152 34073153 rs10158102 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1393.000000,3615.000000, 0.278155,0.721845, maf-5-some-pop 844 chr1 34073800 34073801 rs10914752 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 845 chr1 34080761 34080762 rs12049260 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1815.000000,734.000000, 0.712044,0.287956, maf-5-some-pop,maf-5-all-pops 845 chr1 34080917 34080918 rs12046869 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop 845 chr1 34093470 34093471 rs16835689 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,G, 44.000000,4964.000000, 0.008786,0.991214, maf-5-some-pop 845 chr1 34097255 34097256 rs6425834 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop 845 chr1 34098958 34098959 rs604782 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,CORNELL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop,maf-5-all-pops,genotype-conflict 845 chr1 34109052 34109053 rs370197 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 845 chr1 34111096 34111097 rs618915 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4333.000000,675.000000,675.000000,4333.000000, 0.432608,0.067392,0.067392,0.432608, maf-5-some-pop,genotype-conflict 845 chr1 34132853 34132854 rs513593 0 - C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 845 chr1 34133839 34133840 rs543735 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop,genotype-conflict 845 chr1 34134596 34134597 rs10914759 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2191.000000,2817.000000, 0.437500,0.562500, maf-5-some-pop,maf-5-all-pops,genotype-conflict 845 chr1 34135011 34135012 rs2583454 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 845 chr1 34136273 34136274 rs644477 0 - A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 845 chr1 34137333 34137334 rs10798977 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2037.000000,2971.000000, 0.406749,0.593251, maf-5-some-pop,maf-5-all-pops 845 chr1 34137447 34137448 rs529714 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop 845 chr1 34137465 34137466 rs617090 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 845 chr1 34149073 34149074 rs3754063 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop 845 chr1 34150550 34150551 rs649214 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3122.000000,1886.000000,1886.000000,3122.000000, 0.311701,0.188299,0.188299,0.311701, maf-5-some-pop,maf-5-all-pops,genotype-conflict 845 chr1 34151228 34151229 rs10798980 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2858.000000,2150.000000, 0.570687,0.429313, maf-5-some-pop,maf-5-all-pops 845 chr1 34151259 34151260 rs12023377 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop,maf-5-all-pops 845 chr1 34155500 34155501 rs732889 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 4 A,C,G,T, 2901.000000,2107.000000,2107.000000,2901.000000, 0.289637,0.210363,0.210363,0.289637, maf-5-some-pop,maf-5-all-pops,genotype-conflict 845 chr1 34156532 34156533 rs668310 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 404.000000,4604.000000,4604.000000,404.000000, 0.040335,0.459665,0.459665,0.040335, maf-5-some-pop,genotype-conflict 845 chr1 34157306 34157307 rs16835724 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4997.000000,11.000000, 0.997804,0.002196, 845 chr1 34163046 34163047 rs531232 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 185.000000,4823.000000,4823.000000,185.000000, 0.018470,0.481530,0.481530,0.018470, maf-5-some-pop 845 chr1 34164998 34164999 rs10798982 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3619.000000,1389.000000, 0.722644,0.277356, maf-5-some-pop 845 chr1 34165564 34165565 rs6697837 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4645.000000,363.000000, 0.927516,0.072484, maf-5-some-pop 845 chr1 34173819 34173820 rs564148 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 416.000000,4592.000000, 0.083067,0.916933, maf-5-some-pop,microattr-tpa 845 chr1 34174140 34174141 rs10798983 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2931.000000,2077.000000, 0.585264,0.414736, maf-5-some-pop,maf-5-all-pops 845 chr1 34175350 34175351 rs16835734 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop 845 chr1 34175927 34175928 rs10914766 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 1995.000000,3013.000000, 0.398363,0.601637, maf-5-some-pop,maf-5-all-pops 845 chr1 34176415 34176416 rs7525953 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop,genotype-conflict 845 chr1 34176554 34176555 rs7526059 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop,maf-5-all-pops 845 chr1 34178583 34178584 rs631433 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1844.000000,3164.000000, 0.368211,0.631789, maf-5-some-pop 845 chr1 34178635 34178636 rs557602 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2974.000000,2034.000000, 0.593850,0.406150, maf-5-some-pop,maf-5-all-pops 845 chr1 34179407 34179408 rs551060 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop,maf-5-all-pops 845 chr1 34179732 34179733 rs12405664 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,genotype-conflict 845 chr1 34181829 34181830 rs7533254 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 845 chr1 34183006 34183007 rs543988 0 + C C C/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1024.000000,3984.000000, 0.204473,0.795527, maf-5-some-pop,maf-5-all-pops 845 chr1 34184466 34184467 rs11803357 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,CSHL-HAPMAP,KRIBB_YJKIM,TISHKOFF, 2 C,T, 45.000000,4963.000000, 0.008986,0.991014, maf-5-some-pop 845 chr1 34186192 34186193 rs528059 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4127.000000,881.000000, 0.824081,0.175919, maf-5-some-pop 845 chr1 34189428 34189429 rs544991 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2403.000000,2605.000000, 0.479832,0.520168, maf-5-some-pop 845 chr1 34193734 34193735 rs608108 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2552.000000,2456.000000, 0.509585,0.490415, maf-5-some-pop,maf-5-all-pops 845 chr1 34194735 34194736 rs555733 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2143.000000,2865.000000, 0.427915,0.572085, maf-5-some-pop,maf-5-all-pops 845 chr1 34197040 34197041 rs505996 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2750.000000,2258.000000, 0.549121,0.450879, maf-5-some-pop,maf-5-all-pops 845 chr1 34203688 34203689 rs6661190 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1715.000000,3293.000000, 0.342452,0.657548, maf-5-some-pop,maf-5-all-pops 845 chr1 34203876 34203877 rs935098 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 845 chr1 34205858 34205859 rs481776 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3272.000000,1736.000000,1736.000000,3272.000000, 0.326677,0.173323,0.173323,0.326677, maf-5-some-pop,maf-5-all-pops,genotype-conflict 845 chr1 34206932 34206933 rs512332 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,genotype-conflict 845 chr1 34206978 34206979 rs513049 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1763.000000,3245.000000, 0.352037,0.647963, maf-5-some-pop 846 chr1 34210730 34210731 rs4559461 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP, 2 A,T, 1742.000000,3266.000000, 0.347843,0.652157, maf-5-some-pop,maf-5-all-pops 846 chr1 34212875 34212876 rs9943157 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3625.000000,1383.000000, 0.723842,0.276158, maf-5-some-pop,maf-5-all-pops 846 chr1 34213108 34213109 rs6682875 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1990.000000,3018.000000, 0.397364,0.602636, maf-5-some-pop 846 chr1 34213386 34213387 rs511409 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4645.000000,363.000000, 0.927516,0.072484, maf-5-some-pop,genotype-conflict 846 chr1 34216657 34216658 rs527272 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2970.000000,2038.000000, 0.593051,0.406949, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34217528 34217529 rs3118200 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 2227.000000,2781.000000, 0.444688,0.555312, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34217930 34217931 rs989661 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3430.000000,1578.000000, 0.684904,0.315096, maf-5-some-pop,maf-5-all-pops 846 chr1 34220380 34220381 rs2583453 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop,genotype-conflict 846 chr1 34221809 34221810 rs490109 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1421.000000,3587.000000, 0.283746,0.716254, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34222323 34222324 rs770410 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1963.000000,3045.000000, 0.391973,0.608027, maf-5-some-pop,maf-5-all-pops 846 chr1 34222352 34222353 rs16835832 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop 846 chr1 34225783 34225784 rs491586 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,maf-5-all-pops 846 chr1 34229129 34229130 rs1348174 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 C,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,genotype-conflict 846 chr1 34231216 34231217 rs509828 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1071.000000,3937.000000, 0.213858,0.786142, maf-5-some-pop,maf-5-all-pops 846 chr1 34232224 34232225 rs479235 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1824.000000,3184.000000, 0.364217,0.635783, maf-5-some-pop,maf-5-all-pops 846 chr1 34235076 34235077 rs10914774 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 846 chr1 34235257 34235258 rs10914775 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 846 chr1 34237521 34237522 rs12081828 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 846 chr1 34240337 34240338 rs6679294 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 846 chr1 34245485 34245486 rs501481 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 846 chr1 34246517 34246518 rs11803887 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 846 chr1 34246609 34246610 rs4652973 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop 846 chr1 34247076 34247077 rs7544913 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop,genotype-conflict 846 chr1 34247895 34247896 rs478205 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop,maf-5-all-pops 846 chr1 34248063 34248064 rs476463 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1004.000000,4004.000000, 0.200479,0.799521, maf-5-some-pop,microattr-tpa,genotype-conflict 846 chr1 34248835 34248836 rs4652974 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2580.000000,2428.000000, 0.515176,0.484824, maf-5-some-pop,maf-5-all-pops 846 chr1 34249017 34249018 rs507641 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,TISHKOFF, 2 G,T, 1509.000000,3499.000000, 0.301318,0.698682, maf-5-some-pop,maf-5-all-pops 846 chr1 34249329 34249330 rs717030 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 4 A,C,G,T, 4907.000000,101.000000,101.000000,4907.000000, 0.489916,0.010084,0.010084,0.489916, maf-5-some-pop,microattr-tpa 846 chr1 34250445 34250446 rs1441523 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop,genotype-conflict 846 chr1 34252133 34252134 rs16835901 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 846 chr1 34254415 34254416 rs6425838 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3616.000000,1392.000000, 0.722045,0.277955, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34256733 34256734 rs545170 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 145.000000,4863.000000,4863.000000,145.000000, 0.014477,0.485523,0.485523,0.014477, maf-5-some-pop 846 chr1 34257470 34257471 rs10737373 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 846 chr1 34257804 34257805 rs9659592 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop,maf-5-all-pops 846 chr1 34259254 34259255 rs12742027 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop 846 chr1 34265968 34265969 rs10493054 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4478.000000,530.000000, 0.894169,0.105831, maf-5-some-pop 846 chr1 34267706 34267707 rs1325245 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 4836.000000,172.000000,172.000000,4836.000000, 0.482827,0.017173,0.017173,0.482827, maf-5-some-pop,maf-5-all-pops 846 chr1 34267944 34267945 rs10914782 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2502.000000,2506.000000, 0.499601,0.500399, maf-5-some-pop,maf-5-all-pops 846 chr1 34269434 34269435 rs1886637 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34270993 34270994 rs12567192 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 778.000000,4230.000000, 0.155351,0.844649, maf-5-some-pop 846 chr1 34271054 34271055 rs10914783 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop,genotype-conflict 846 chr1 34276879 34276880 rs10798993 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop,genotype-conflict 846 chr1 34277173 34277174 rs10798994 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 776.000000,4232.000000, 0.154952,0.845048, maf-5-some-pop 846 chr1 34277721 34277722 rs2031476 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 537.000000,4471.000000,4471.000000,537.000000, 0.053614,0.446386,0.446386,0.053614, maf-5-some-pop 846 chr1 34277978 34277979 rs11587451 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4064.000000,944.000000, 0.811502,0.188498, maf-5-some-pop,maf-5-all-pops 846 chr1 34279741 34279742 rs3856129 0 - A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 846 chr1 34283893 34283894 rs3845476 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1359.000000,3649.000000, 0.271366,0.728634, maf-5-some-pop,maf-5-all-pops 846 chr1 34284117 34284118 rs3842834 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3709.000000,1299.000000, 0.740615,0.259385, maf-5-some-pop 846 chr1 34285341 34285342 rs17342512 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3013.000000,1995.000000, 0.601637,0.398363, maf-5-some-pop,maf-5-all-pops 846 chr1 34287511 34287512 rs2281595 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 2593.000000,2415.000000, 0.517772,0.482228, maf-5-some-pop,maf-5-all-pops 846 chr1 34288934 34288935 rs12096149 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop,maf-5-all-pops 846 chr1 34291055 34291056 rs12062730 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3683.000000,1325.000000, 0.735423,0.264577, maf-5-some-pop,genotype-conflict 846 chr1 34291675 34291676 rs12067054 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1326.000000,3682.000000, 0.264776,0.735224, maf-5-some-pop 846 chr1 34291780 34291781 rs10753290 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4482.000000,526.000000, 0.894968,0.105032, maf-5-some-pop 846 chr1 34291835 34291836 rs3845477 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1318.000000,3690.000000, 0.263179,0.736821, maf-5-some-pop 846 chr1 34291970 34291971 rs3845478 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop 846 chr1 34293096 34293097 rs10914787 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2220.000000,2788.000000, 0.443291,0.556709, maf-5-some-pop,maf-5-all-pops 846 chr1 34293847 34293848 rs1015266 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2866.000000,2142.000000, 0.572284,0.427716, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34294300 34294301 rs1570092 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 846 chr1 34294706 34294707 rs911213 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 3 A,G,T, 4428.000000,578.000000,2.000000, 0.884185,0.115416,0.000399, maf-5-some-pop 846 chr1 34294725 34294726 rs10914788 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop,maf-5-all-pops 846 chr1 34294775 34294776 rs911214 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 846 chr1 34294825 34294826 rs10753291 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 846 chr1 34294873 34294874 rs10914789 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3640.000000,1368.000000, 0.726837,0.273163, maf-5-some-pop 846 chr1 34301428 34301429 rs2358513 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop,genotype-conflict 846 chr1 34303862 34303863 rs6425846 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop 846 chr1 34303926 34303927 rs6425847 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop 846 chr1 34304142 34304143 rs6425849 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop 846 chr1 34304417 34304418 rs10914799 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop 846 chr1 34305088 34305089 rs1950894 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop,maf-5-all-pops 846 chr1 34305228 34305229 rs1950895 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2847.000000,2161.000000, 0.568490,0.431510, maf-5-some-pop,maf-5-all-pops 846 chr1 34306176 34306177 rs1884981 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2380.000000,2628.000000, 0.475240,0.524760, maf-5-some-pop,maf-5-all-pops 846 chr1 34307729 34307730 rs987955 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1714.000000,3294.000000,3294.000000,1714.000000, 0.171126,0.328874,0.328874,0.171126, maf-5-some-pop,maf-5-all-pops 846 chr1 34307750 34307751 rs987954 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1387.000000,3621.000000,3621.000000,1387.000000, 0.138478,0.361522,0.361522,0.138478, maf-5-some-pop,maf-5-all-pops 846 chr1 34308104 34308105 rs987953 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 846 chr1 34308304 34308305 rs6682867 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 385.000000,4623.000000, 0.076877,0.923123, maf-5-some-pop 846 chr1 34308584 34308585 rs6425850 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1612.000000,3396.000000, 0.321885,0.678115, maf-5-some-pop,maf-5-all-pops 846 chr1 34312178 34312179 rs746667 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop 846 chr1 34312357 34312358 rs746666 0 - T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SEQUENOM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 846 chr1 34313161 34313162 rs7512227 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2196.000000,2812.000000, 0.438498,0.561502, maf-5-some-pop,maf-5-all-pops 846 chr1 34314518 34314519 rs16835990 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, maf-5-some-pop 846 chr1 34318523 34318524 rs1407121 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 2562.000000,2446.000000, 0.511581,0.488419, maf-5-some-pop,maf-5-all-pops 846 chr1 34318789 34318790 rs1407122 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2338.000000,2670.000000, 0.466853,0.533147, maf-5-some-pop,maf-5-all-pops 846 chr1 34320135 34320136 rs1407123 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop 846 chr1 34323486 34323487 rs1158145 0 - T T A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 861.000000,1241.000000, 0.409610,0.590390, maf-5-some-pop,maf-5-all-pops 846 chr1 34327581 34327582 rs11589979 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2613.000000,2395.000000, 0.521765,0.478235, maf-5-some-pop,maf-5-all-pops 846 chr1 34328647 34328648 rs2295607 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 846 chr1 34331389 34331390 rs1321627 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 846 chr1 34331773 34331774 rs16836007 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 846 chr1 34335984 34335985 rs2273570 0 + T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 4193.000000,815.000000, 0.837260,0.162740, maf-5-some-pop,maf-5-all-pops 846 chr1 34337703 34337704 rs1923140 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2480.000000,2528.000000, 0.495208,0.504792, maf-5-some-pop,maf-5-all-pops,genotype-conflict 846 chr1 34340466 34340467 rs10799000 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4234.000000,774.000000, 0.845447,0.154553, maf-5-some-pop 846 chr1 34340818 34340819 rs12122958 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4261.000000,747.000000, 0.850839,0.149161, maf-5-some-pop,genotype-conflict 847 chr1 34346360 34346361 rs6425855 0 + G G G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 512.000000,4496.000000, 0.102236,0.897764, maf-5-some-pop 847 chr1 34346561 34346562 rs6692851 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop 847 chr1 34347105 34347106 rs7554118 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 616.000000,4392.000000, 0.123003,0.876997, maf-5-some-pop,genotype-conflict 847 chr1 34350220 34350221 rs10799001 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1173.000000,3835.000000, 0.234225,0.765775, maf-5-some-pop 847 chr1 34350917 34350918 rs16836066 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 847 chr1 34351951 34351952 rs16836069 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop 847 chr1 34359857 34359858 rs2281597 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4444.000000,564.000000, 0.887380,0.112620, maf-5-some-pop,microattr-tpa,genotype-conflict 847 chr1 34360861 34360862 rs10753294 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,maf-5-all-pops 847 chr1 34362664 34362665 rs10799006 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 847 chr1 34365606 34365607 rs16836079 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,genotype-conflict 847 chr1 34366410 34366411 rs7528354 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1928.000000,3080.000000, 0.384984,0.615016, maf-5-some-pop,maf-5-all-pops 847 chr1 34366551 34366552 rs16836083 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop 847 chr1 34369244 34369245 rs1570089 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3646.000000,1362.000000, 0.728035,0.271965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 847 chr1 34375198 34375199 rs911216 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop 847 chr1 34375360 34375361 rs911217 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 847 chr1 34380729 34380730 rs10914813 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1213.000000,3795.000000, 0.242212,0.757788, maf-5-some-pop 847 chr1 34381259 34381260 rs7355156 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop 847 chr1 34382422 34382423 rs7533958 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2407.000000,2601.000000, 0.480631,0.519369, maf-5-some-pop,maf-5-all-pops 847 chr1 34383107 34383108 rs12081842 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 847 chr1 34383553 34383554 rs12124122 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop 847 chr1 34383661 34383662 rs12029535 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 739.000000,4269.000000, 0.147564,0.852436, maf-5-some-pop 847 chr1 34386709 34386710 rs12031839 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3973.000000,1035.000000, 0.793331,0.206669, maf-5-some-pop 847 chr1 34394258 34394259 rs10914817 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 847 chr1 34394681 34394682 rs7555410 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop,genotype-conflict 847 chr1 34396255 34396256 rs10799010 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3525.000000,1483.000000, 0.703874,0.296126, maf-5-some-pop,maf-5-all-pops 847 chr1 34398140 34398141 rs6425863 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2937.000000,2071.000000, 0.586462,0.413538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 847 chr1 34400203 34400204 rs41397146 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,AFFY_GWHS,SSMP,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 847 chr1 34401452 34401453 rs16836099 0 + A A A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop 847 chr1 34406841 34406842 rs6677917 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4341.000000,667.000000, 0.866813,0.133187, maf-5-some-pop,genotype-conflict 847 chr1 34422277 34422278 rs487638 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3413.000000,1595.000000, 0.681510,0.318490, maf-5-some-pop,maf-5-all-pops 847 chr1 34422312 34422313 rs487736 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1219.000000,3789.000000, 0.243411,0.756589, maf-5-some-pop,maf-5-all-pops 847 chr1 34422968 34422969 rs11811025 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 847 chr1 34423211 34423212 rs11802682 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop 847 chr1 34424392 34424393 rs549048 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2781.000000,2227.000000, 0.555312,0.444688, maf-5-some-pop,maf-5-all-pops 847 chr1 34424461 34424462 rs549944 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3909.000000,1099.000000, 0.780551,0.219449, maf-5-some-pop,maf-5-all-pops 847 chr1 34424490 34424491 rs483069 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop,maf-5-all-pops 847 chr1 34427307 34427308 rs12063356 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop 847 chr1 34430532 34430533 rs545337 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1445.000000,3563.000000, 0.288538,0.711462, maf-5-some-pop 847 chr1 34431556 34431557 rs575759 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop 847 chr1 34431772 34431773 rs1325252 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop,genotype-conflict 847 chr1 34431968 34431969 rs16836145 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 773.000000,4235.000000, 0.154353,0.845647, maf-5-some-pop,genotype-conflict 847 chr1 34432209 34432210 rs9425974 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 847 chr1 34433894 34433895 rs728567 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4778.000000,230.000000,230.000000,4778.000000, 0.477037,0.022963,0.022963,0.477037, maf-5-some-pop 847 chr1 34438708 34438709 rs501094 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop 847 chr1 34438880 34438881 rs502199 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3013.000000,1995.000000, 0.601637,0.398363, maf-5-some-pop,maf-5-all-pops 847 chr1 34438956 34438957 rs10753297 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3445.000000,1563.000000, 0.687899,0.312101, maf-5-some-pop,maf-5-all-pops 847 chr1 34440315 34440316 rs536766 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2485.000000,2523.000000, 0.496206,0.503794, maf-5-some-pop,maf-5-all-pops 847 chr1 34440411 34440412 rs6677026 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop 847 chr1 34441125 34441126 rs1536110 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2211.000000,2797.000000, 0.441494,0.558506, maf-5-some-pop,maf-5-all-pops 847 chr1 34443687 34443688 rs749733 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3062.000000,1946.000000,1946.000000,3062.000000, 0.305711,0.194289,0.194289,0.305711, maf-5-some-pop,maf-5-all-pops 847 chr1 34444229 34444230 rs12127584 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop 847 chr1 34444493 34444494 rs560563 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop,maf-5-all-pops,genotype-conflict 847 chr1 34444968 34444969 rs12125152 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 847 chr1 34445369 34445370 rs12084747 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop 847 chr1 34451604 34451605 rs10914827 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3683.000000,1325.000000, 0.735423,0.264577, maf-5-some-pop 847 chr1 34453281 34453282 rs10449236 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3418.000000,1590.000000, 0.682508,0.317492, maf-5-some-pop,maf-5-all-pops 847 chr1 34462828 34462829 rs7525205 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,genotype-conflict 847 chr1 34463072 34463073 rs494514 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 847 chr1 34463778 34463779 rs501060 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop 847 chr1 34469766 34469767 rs9425978 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 847 chr1 34470307 34470308 rs487472 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1803.000000,3205.000000, 0.360024,0.639976, maf-5-some-pop,maf-5-all-pops 847 chr1 34471684 34471685 rs9425979 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop 848 chr1 34472316 34472317 rs4290025 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop,maf-5-all-pops 848 chr1 34473218 34473219 rs12037087 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3810.000000,1198.000000, 0.760783,0.239217, maf-5-some-pop 848 chr1 34475730 34475731 rs517542 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1845.000000,3163.000000, 0.368411,0.631589, maf-5-some-pop,maf-5-all-pops 848 chr1 34477580 34477581 rs1325258 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop 848 chr1 34477892 34477893 rs10914839 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2435.000000,2573.000000, 0.486222,0.513778, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34478483 34478484 rs4653367 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop,maf-5-all-pops 848 chr1 34479433 34479434 rs12025252 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34481071 34481072 rs12752483 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 758.000000,4250.000000, 0.151358,0.848642, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34482512 34482513 rs4652980 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3055.000000,1953.000000, 0.610024,0.389976, maf-5-some-pop,genotype-conflict 848 chr1 34486485 34486486 rs16836204 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3894.000000,1114.000000, 0.777556,0.222444, maf-5-some-pop,genotype-conflict 848 chr1 34486506 34486507 rs12092202 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop,maf-5-all-pops 848 chr1 34486987 34486988 rs10914844 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4200.000000,808.000000, 0.838658,0.161342, maf-5-some-pop 848 chr1 34488114 34488115 rs10914845 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3685.000000,1323.000000, 0.735823,0.264177, maf-5-some-pop 848 chr1 34489757 34489758 rs12562296 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop 848 chr1 34490494 34490495 rs10159305 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,maf-5-all-pops 848 chr1 34491162 34491163 rs2164580 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 652.000000,4356.000000, 0.130192,0.869808, maf-5-some-pop,maf-5-all-pops 848 chr1 34492470 34492471 rs4653377 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop 848 chr1 34492503 34492504 rs4653378 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop,maf-5-all-pops 848 chr1 34495358 34495359 rs12030711 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4030.000000,978.000000, 0.804712,0.195288, maf-5-some-pop 848 chr1 34495463 34495464 rs12049153 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 987.000000,4021.000000, 0.197085,0.802915, maf-5-some-pop 848 chr1 34500470 34500471 rs4652983 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop 848 chr1 34500666 34500667 rs4652984 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1407.000000,3601.000000, 0.280950,0.719050, maf-5-some-pop,maf-5-all-pops 848 chr1 34502160 34502161 rs12062460 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 848 chr1 34505114 34505115 rs2625684 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3779.000000,1229.000000, 0.754593,0.245407, maf-5-some-pop,maf-5-all-pops 848 chr1 34509888 34509889 rs3098283 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 848 chr1 34511454 34511455 rs3125615 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4295.000000,713.000000, 0.857628,0.142372, maf-5-some-pop 848 chr1 34514485 34514486 rs3131529 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3572.000000,1436.000000, 0.713259,0.286741, maf-5-some-pop,maf-5-all-pops 848 chr1 34515329 34515330 rs899378 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2980.000000,2028.000000, 0.595048,0.404952, maf-5-some-pop,maf-5-all-pops 848 chr1 34516662 34516663 rs12127677 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop 848 chr1 34516929 34516930 rs10914856 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 587.000000,4421.000000, 0.117212,0.882788, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34519125 34519126 rs12074823 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4318.000000,690.000000, 0.862220,0.137780, maf-5-some-pop,maf-5-all-pops 848 chr1 34521565 34521566 rs4653384 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 848 chr1 34521910 34521911 rs12127449 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop 848 chr1 34525104 34525105 rs6700561 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 620.000000,4388.000000, 0.123802,0.876198, maf-5-some-pop,maf-5-all-pops 848 chr1 34525201 34525202 rs2618777 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1307.000000,3701.000000, 0.260982,0.739018, maf-5-some-pop,maf-5-all-pops 848 chr1 34528434 34528435 rs2625688 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3835.000000,1173.000000,1173.000000,3835.000000, 0.382887,0.117113,0.117113,0.382887, maf-5-some-pop,genotype-conflict 848 chr1 34531679 34531680 rs7555623 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop 848 chr1 34532187 34532188 rs9425898 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 848 chr1 34533415 34533416 rs1865891 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 848 chr1 34533701 34533702 rs1865892 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1376.000000,3632.000000, 0.274760,0.725240, maf-5-some-pop 848 chr1 34540667 34540668 rs1478934 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 848 chr1 34544129 34544130 rs10914860 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop,genotype-conflict 848 chr1 34544479 34544480 rs12120060 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3781.000000,1227.000000, 0.754992,0.245008, maf-5-some-pop,maf-5-all-pops 848 chr1 34546013 34546014 rs9425901 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 848 chr1 34546465 34546466 rs9425902 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 848 chr1 34551602 34551603 rs1564275 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 1861.000000,3147.000000, 0.371605,0.628395, maf-5-some-pop,maf-5-all-pops 848 chr1 34556045 34556046 rs10914862 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 3914.000000,1094.000000, 0.781550,0.218450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34565358 34565359 rs12048816 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 906.000000,4102.000000, 0.180911,0.819089, maf-5-some-pop,maf-5-all-pops 848 chr1 34571379 34571380 rs2053218 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2774.000000,2234.000000,2234.000000,2774.000000, 0.276957,0.223043,0.223043,0.276957, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34572164 34572165 rs10914863 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2625.000000,2383.000000, 0.524161,0.475839, maf-5-some-pop,maf-5-all-pops,genotype-conflict 848 chr1 34573169 34573170 rs9700218 0 + G G C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 9 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop,genotype-conflict 848 chr1 34573680 34573681 rs1020980 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 G,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop 848 chr1 34573770 34573771 rs989277 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2894.000000,2114.000000, 0.577875,0.422125, maf-5-some-pop,maf-5-all-pops 848 chr1 34584664 34584665 rs1065964 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2351.000000,2657.000000, 0.469449,0.530551, maf-5-some-pop,maf-5-all-pops 848 chr1 34590705 34590706 rs9425907 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2883.000000,2125.000000, 0.575679,0.424321, maf-5-some-pop,maf-5-all-pops 848 chr1 34591068 34591069 rs6425876 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop 848 chr1 34599867 34599868 rs2994599 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop,genotype-conflict 848 chr1 34601552 34601553 rs9425998 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 911.000000,4097.000000, 0.181909,0.818091, maf-5-some-pop,maf-5-all-pops 848 chr1 34602385 34602386 rs12046143 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3003.000000,2005.000000, 0.599641,0.400359, maf-5-some-pop,maf-5-all-pops 848 chr1 34602484 34602485 rs10914875 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2708.000000,2300.000000, 0.540735,0.459265, maf-5-some-pop,maf-5-all-pops 849 chr1 34604699 34604700 rs6683812 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3366.000000,1642.000000, 0.672125,0.327875, maf-5-some-pop,maf-5-all-pops 849 chr1 34605278 34605279 rs9286953 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3214.000000,1794.000000, 0.641773,0.358227, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34608340 34608341 rs771149 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 454.000000,4554.000000,4554.000000,454.000000, 0.045327,0.454673,0.454673,0.045327, maf-5-some-pop 849 chr1 34609393 34609394 rs705210 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 971.000000,4037.000000,4037.000000,971.000000, 0.096945,0.403055,0.403055,0.096945, maf-5-some-pop 849 chr1 34609737 34609738 rs771147 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1848.000000,3160.000000,3160.000000,1848.000000, 0.184505,0.315495,0.315495,0.184505, maf-5-some-pop,maf-5-all-pops 849 chr1 34610221 34610222 rs771145 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1305.000000,3703.000000,3703.000000,1305.000000, 0.130292,0.369708,0.369708,0.130292, maf-5-some-pop,maf-5-all-pops 849 chr1 34614165 34614166 rs10914876 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 849 chr1 34619216 34619217 rs11576524 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1683.000000,3325.000000, 0.336062,0.663938, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34619646 34619647 rs4652989 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1007.000000,4001.000000, 0.201078,0.798922, maf-5-some-pop 849 chr1 34619710 34619711 rs4652990 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2381.000000,2627.000000, 0.475439,0.524561, maf-5-some-pop,maf-5-all-pops 849 chr1 34621785 34621786 rs10158832 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2379.000000,2629.000000, 0.475040,0.524960, maf-5-some-pop,maf-5-all-pops 849 chr1 34622348 34622349 rs4652992 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 849 chr1 34635091 34635092 rs7529786 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,maf-5-all-pops 849 chr1 34645108 34645109 rs1467834 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 1409.000000,3599.000000,3599.000000,1409.000000, 0.140675,0.359325,0.359325,0.140675, maf-5-some-pop,genotype-conflict 849 chr1 34648045 34648046 rs1335855 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3994.000000,1014.000000,1014.000000,3994.000000, 0.398762,0.101238,0.101238,0.398762, maf-5-some-pop 849 chr1 34648377 34648378 rs12406216 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1691.000000,3317.000000, 0.337660,0.662340, maf-5-some-pop,maf-5-all-pops 849 chr1 34653821 34653822 rs2792928 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4010.000000,998.000000,998.000000,4010.000000, 0.400359,0.099641,0.099641,0.400359, maf-5-some-pop 849 chr1 34653855 34653856 rs41332551 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop 849 chr1 34655467 34655468 rs753314 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4149.000000,859.000000, 0.828474,0.171526, maf-5-some-pop 849 chr1 34655934 34655935 rs1677761 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4142.000000,866.000000,866.000000,4142.000000, 0.413538,0.086462,0.086462,0.413538, maf-5-some-pop 849 chr1 34656127 34656128 rs1771374 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 867.000000,4141.000000,4141.000000,867.000000, 0.086562,0.413438,0.413438,0.086562, maf-5-some-pop 849 chr1 34656178 34656179 rs1318222 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 866.000000,4142.000000,4142.000000,866.000000, 0.086462,0.413538,0.413538,0.086462, maf-5-some-pop 849 chr1 34656302 34656303 rs899380 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 868.000000,4140.000000,4140.000000,868.000000, 0.086661,0.413339,0.413339,0.086661, maf-5-some-pop 849 chr1 34656811 34656812 rs1771373 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4141.000000,867.000000,867.000000,4141.000000, 0.413438,0.086562,0.086562,0.413438, maf-5-some-pop 849 chr1 34661651 34661652 rs1771362 0 - G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 849 chr1 34663811 34663812 rs1478929 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 384.000000,4624.000000,4624.000000,384.000000, 0.038339,0.461661,0.461661,0.038339, maf-5-some-pop,microattr-tpa 849 chr1 34664769 34664770 rs1771360 0 - T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 849 chr1 34665218 34665219 rs11584467 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 849 chr1 34667862 34667863 rs12746310 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 692.000000,4316.000000, 0.138179,0.861821, maf-5-some-pop 849 chr1 34670112 34670113 rs2050496 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 568.000000,4440.000000,4440.000000,568.000000, 0.056709,0.443291,0.443291,0.056709, maf-5-some-pop 849 chr1 34671027 34671028 rs297805 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1718.000000,3290.000000,3290.000000,1718.000000, 0.171526,0.328474,0.328474,0.171526, maf-5-some-pop 849 chr1 34671354 34671355 rs297804 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1717.000000,3291.000000,3291.000000,1717.000000, 0.171426,0.328574,0.328574,0.171426, maf-5-some-pop,genotype-conflict 849 chr1 34672024 34672025 rs915418 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 239.000000,4769.000000,4769.000000,239.000000, 0.023862,0.476138,0.476138,0.023862, maf-5-some-pop 849 chr1 34672207 34672208 rs297803 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4776.000000,232.000000,232.000000,4776.000000, 0.476837,0.023163,0.023163,0.476837, maf-5-some-pop 849 chr1 34674813 34674814 rs297802 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3786.000000,1222.000000,1222.000000,3786.000000, 0.377995,0.122005,0.122005,0.377995, maf-5-some-pop 849 chr1 34675646 34675647 rs17557225 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop 849 chr1 34675754 34675755 rs297794 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 227.000000,4781.000000,4781.000000,227.000000, 0.022664,0.477336,0.477336,0.022664, maf-5-some-pop,genotype-conflict 849 chr1 34676248 34676249 rs12723372 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 430.000000,4578.000000, 0.085863,0.914137, maf-5-some-pop,genotype-conflict 849 chr1 34678364 34678365 rs11577248 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop,genotype-conflict 849 chr1 34679065 34679066 rs4652997 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2440.000000,2568.000000, 0.487220,0.512780, maf-5-some-pop,maf-5-all-pops 849 chr1 34682761 34682762 rs1564274 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 849 chr1 34682855 34682856 rs1023325 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3831.000000,1177.000000,1177.000000,3831.000000, 0.382488,0.117512,0.117512,0.382488, maf-5-some-pop,maf-5-all-pops 849 chr1 34683152 34683153 rs1023324 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1533.000000,3475.000000,3475.000000,1533.000000, 0.153055,0.346945,0.346945,0.153055, maf-5-some-pop,maf-5-all-pops 849 chr1 34684462 34684463 rs705207 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3864.000000,1144.000000,1144.000000,3864.000000, 0.385783,0.114217,0.114217,0.385783, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34685350 34685351 rs10158529 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop,maf-5-all-pops 849 chr1 34686129 34686130 rs12043879 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4022.000000,986.000000, 0.803115,0.196885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34691738 34691739 rs12410640 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1329.000000,3679.000000, 0.265375,0.734625, maf-5-some-pop,maf-5-all-pops 849 chr1 34697487 34697488 rs1414472 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1350.000000,3658.000000,3658.000000,1350.000000, 0.134784,0.365216,0.365216,0.134784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34697586 34697587 rs1414471 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 849 chr1 34706157 34706158 rs10914890 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1372.000000,3636.000000, 0.273962,0.726038, maf-5-some-pop,maf-5-all-pops 849 chr1 34710493 34710494 rs12039745 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1385.000000,3623.000000, 0.276558,0.723442, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34715461 34715462 rs2691373 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4043.000000,965.000000, 0.807308,0.192692, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34715635 34715636 rs1342158 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 845.000000,4163.000000,4163.000000,845.000000, 0.084365,0.415635,0.415635,0.084365, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34715686 34715687 rs1342157 0 - C C C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34715773 34715774 rs2795631 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4044.000000,964.000000,964.000000,4044.000000, 0.403754,0.096246,0.096246,0.403754, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34722690 34722691 rs2691375 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4026.000000,982.000000, 0.803914,0.196086, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34723162 34723163 rs771410 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 841.000000,4167.000000,4167.000000,841.000000, 0.083966,0.416034,0.416034,0.083966, maf-5-some-pop,maf-5-all-pops 849 chr1 34723927 34723928 rs12128858 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 737.000000,4271.000000, 0.147165,0.852835, maf-5-some-pop,genotype-conflict 849 chr1 34727438 34727439 rs12046109 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 849 chr1 34727578 34727579 rs771401 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4006.000000,1002.000000,1002.000000,4006.000000, 0.399960,0.100040,0.100040,0.399960, maf-5-some-pop,maf-5-all-pops,genotype-conflict 849 chr1 34727725 34727726 rs12039643 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4368.000000,640.000000, 0.872204,0.127796, maf-5-some-pop 849 chr1 34727901 34727902 rs771400 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4177.000000,831.000000,831.000000,4177.000000, 0.417033,0.082967,0.082967,0.417033, maf-5-some-pop,maf-5-all-pops 849 chr1 34728279 34728280 rs771399 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 279.000000,4729.000000,4729.000000,279.000000, 0.027855,0.472145,0.472145,0.027855, maf-5-some-pop 849 chr1 34734025 34734026 rs10799034 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3403.000000,1605.000000, 0.679513,0.320487, maf-5-some-pop,maf-5-all-pops 849 chr1 34734065 34734066 rs10914894 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop 850 chr1 34734176 34734177 rs771396 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34735937 34735938 rs10914896 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 994.000000,4014.000000, 0.198482,0.801518, maf-5-some-pop,maf-5-all-pops 850 chr1 34736051 34736052 rs7524118 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3378.000000,1630.000000, 0.674521,0.325479, maf-5-some-pop,maf-5-all-pops 850 chr1 34736286 34736287 rs1414470 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2285.000000,2723.000000,2723.000000,2285.000000, 0.228135,0.271865,0.271865,0.228135, maf-5-some-pop,maf-5-all-pops 850 chr1 34736883 34736884 rs771394 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 71.000000,4937.000000,4937.000000,71.000000, 0.007089,0.492911,0.492911,0.007089, maf-5-some-pop,genotype-conflict 850 chr1 34738011 34738012 rs1361670 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops 850 chr1 34738697 34738698 rs10799035 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2681.000000,2327.000000, 0.535343,0.464657, maf-5-some-pop,maf-5-all-pops 850 chr1 34738766 34738767 rs771393 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 78.000000,4930.000000,4930.000000,78.000000, 0.007788,0.492212,0.492212,0.007788, maf-5-some-pop 850 chr1 34741604 34741605 rs880017 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1504.000000,3504.000000,3504.000000,1504.000000, 0.150160,0.349840,0.349840,0.150160, maf-5-some-pop,maf-5-all-pops 850 chr1 34741951 34741952 rs6425886 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops 850 chr1 34742066 34742067 rs1335858 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1601.000000,3407.000000,3407.000000,1601.000000, 0.159844,0.340156,0.340156,0.159844, maf-5-some-pop,maf-5-all-pops 850 chr1 34742255 34742256 rs979336 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1623.000000,3385.000000,3385.000000,1623.000000, 0.162041,0.337959,0.337959,0.162041, maf-5-some-pop,maf-5-all-pops 850 chr1 34743075 34743076 rs1342153 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3387.000000,1621.000000, 0.676318,0.323682, maf-5-some-pop,maf-5-all-pops 850 chr1 34746969 34746970 rs1360877 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 3387.000000,1621.000000,1621.000000,3387.000000, 0.338159,0.161841,0.161841,0.338159, maf-5-some-pop,maf-5-all-pops 850 chr1 34748753 34748754 rs9661105 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop,maf-5-all-pops 850 chr1 34748814 34748815 rs771392 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP, 2 C,G, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,genotype-conflict 850 chr1 34750935 34750936 rs771390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4229.000000,779.000000, 0.844449,0.155551, maf-5-some-pop,maf-5-all-pops,microattr-tpa 850 chr1 34753884 34753885 rs10914898 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1321.000000,3687.000000, 0.263778,0.736222, maf-5-some-pop,maf-5-all-pops 850 chr1 34754068 34754069 rs12057338 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 850 chr1 34754343 34754344 rs10493056 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop 850 chr1 34756695 34756696 rs6689625 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 2997.000000,2011.000000, 0.598442,0.401558, maf-5-some-pop,maf-5-all-pops 850 chr1 34760575 34760576 rs2091188 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2812.000000,2196.000000, 0.561502,0.438498, maf-5-some-pop,maf-5-all-pops 850 chr1 34761081 34761082 rs12028676 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 584.000000,4424.000000, 0.116613,0.883387, maf-5-some-pop 850 chr1 34761353 34761354 rs1342163 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4832.000000,176.000000,176.000000,4832.000000, 0.482428,0.017572,0.017572,0.482428, maf-5-some-pop 850 chr1 34761363 34761364 rs4653018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 850 chr1 34762088 34762089 rs7553842 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop 850 chr1 34770103 34770104 rs2359233 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2166.000000,2842.000000,2842.000000,2166.000000, 0.216254,0.283746,0.283746,0.216254, maf-5-some-pop,maf-5-all-pops 850 chr1 34770172 34770173 rs2359232 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2438.000000,2570.000000,2570.000000,2438.000000, 0.243411,0.256589,0.256589,0.243411, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34770501 34770502 rs2000187 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 850 chr1 34771141 34771142 rs2177622 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2570.000000,2438.000000, 0.513179,0.486821, maf-5-some-pop,maf-5-all-pops 850 chr1 34772704 34772705 rs10914903 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2566.000000,2442.000000, 0.512380,0.487620, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34776900 34776901 rs4653023 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3831.000000,1177.000000, 0.764976,0.235024, maf-5-some-pop,maf-5-all-pops 850 chr1 34783549 34783550 rs6425887 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2911.000000,2097.000000, 0.581270,0.418730, maf-5-some-pop,maf-5-all-pops 850 chr1 34783683 34783684 rs1541221 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 598.000000,4410.000000, 0.119409,0.880591, maf-5-some-pop,genotype-conflict 850 chr1 34785218 34785219 rs1524624 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2912.000000,2096.000000, 0.581470,0.418530, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34786326 34786327 rs16836566 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 850 chr1 34792426 34792427 rs7542561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop 850 chr1 34793773 34793774 rs7548252 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop,maf-5-all-pops 850 chr1 34793829 34793830 rs10914912 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops 850 chr1 34794587 34794588 rs11583811 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop 850 chr1 34797276 34797277 rs1361676 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 813.000000,4195.000000,4195.000000,813.000000, 0.081170,0.418830,0.418830,0.081170, maf-5-some-pop 850 chr1 34798633 34798634 rs6669315 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 850 chr1 34800324 34800325 rs1342165 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2119.000000,2889.000000,2889.000000,2119.000000, 0.211562,0.288438,0.288438,0.211562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34800532 34800533 rs1418282 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3439.000000,1569.000000,1569.000000,3439.000000, 0.343351,0.156649,0.156649,0.343351, maf-5-some-pop,maf-5-all-pops 850 chr1 34803893 34803894 rs1361672 0 + C C C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop,genotype-conflict 850 chr1 34804498 34804499 rs1342160 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops 850 chr1 34804705 34804706 rs12085800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 850 chr1 34805412 34805413 rs12407133 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2197.000000,2811.000000, 0.438698,0.561302, maf-5-some-pop,maf-5-all-pops 850 chr1 34805624 34805625 rs1917247 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1401.000000,3607.000000,3607.000000,1401.000000, 0.139876,0.360124,0.360124,0.139876, maf-5-some-pop 850 chr1 34807215 34807216 rs4550008 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1785.000000,3223.000000, 0.356430,0.643570, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34811049 34811050 rs11801432 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 850 chr1 34811299 34811300 rs6425888 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3647.000000,1361.000000, 0.728235,0.271765, maf-5-some-pop,maf-5-all-pops 850 chr1 34811905 34811906 rs2140684 0 - T T A/G genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 417.000000,4591.000000,4591.000000,417.000000, 0.041633,0.458367,0.458367,0.041633, maf-5-some-pop 850 chr1 34812169 34812170 rs4147162 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop,genotype-conflict 850 chr1 34816725 34816726 rs1418283 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3149.000000,1859.000000, 0.628794,0.371206, maf-5-some-pop,maf-5-all-pops 850 chr1 34817956 34817957 rs10914928 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2465.000000,2543.000000, 0.492212,0.507788, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34818605 34818606 rs12142853 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1677.000000,3331.000000, 0.334864,0.665136, maf-5-some-pop,maf-5-all-pops 850 chr1 34821830 34821831 rs12064632 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop 850 chr1 34822849 34822850 rs2049421 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1883.000000,3125.000000,3125.000000,1883.000000, 0.187999,0.312001,0.312001,0.187999, maf-5-some-pop,maf-5-all-pops 850 chr1 34822963 34822964 rs1541218 0 + A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 3 A,C,T, 277.000000,4725.000000,6.000000, 0.055312,0.943490,0.001198, maf-5-some-pop,genotype-conflict 850 chr1 34823559 34823560 rs2049420 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3110.000000,1898.000000,1898.000000,3110.000000, 0.310503,0.189497,0.189497,0.310503, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34823621 34823622 rs2140682 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2398.000000,2610.000000,2610.000000,2398.000000, 0.239417,0.260583,0.260583,0.239417, maf-5-some-pop,maf-5-all-pops 850 chr1 34828318 34828319 rs12117975 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop,maf-5-all-pops 850 chr1 34829839 34829840 rs17500432 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop 850 chr1 34831425 34831426 rs6425890 0 + C C A/C genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4739.000000,269.000000, 0.946286,0.053714, maf-5-some-pop,genotype-conflict 850 chr1 34832240 34832241 rs10914932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34832325 34832326 rs12126901 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,genotype-conflict 850 chr1 34833808 34833809 rs741990 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2385.000000,2623.000000, 0.476238,0.523762, maf-5-some-pop,maf-5-all-pops 850 chr1 34833823 34833824 rs17500611 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop 850 chr1 34834957 34834958 rs1774256 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2057.000000,2951.000000,2951.000000,2057.000000, 0.205371,0.294629,0.294629,0.205371, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34835179 34835180 rs1736476 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 269.000000,4739.000000,4739.000000,269.000000, 0.026857,0.473143,0.473143,0.026857, maf-5-some-pop,genotype-conflict 850 chr1 34836587 34836588 rs17372014 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop 850 chr1 34838032 34838033 rs705206 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop 850 chr1 34838372 34838373 rs705205 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop 850 chr1 34839500 34839501 rs705203 0 + C C C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1565.000000,3443.000000, 0.312500,0.687500, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34839847 34839848 rs10914933 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,genotype-conflict 850 chr1 34844835 34844836 rs705197 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1427.000000,3581.000000,3581.000000,1427.000000, 0.142472,0.357528,0.357528,0.142472, maf-5-some-pop,maf-5-all-pops,genotype-conflict 850 chr1 34847032 34847033 rs741987 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3863.000000,1145.000000,1145.000000,3863.000000, 0.385683,0.114317,0.114317,0.385683, maf-5-some-pop,maf-5-all-pops 850 chr1 34855612 34855613 rs10799050 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop,maf-5-all-pops 850 chr1 34859868 34859869 rs10799053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3899.000000,1109.000000, 0.778554,0.221446, maf-5-some-pop,genotype-conflict 850 chr1 34863388 34863389 rs6658096 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3445.000000,1563.000000, 0.687899,0.312101, maf-5-some-pop,genotype-conflict 851 chr1 34866655 34866656 rs2294193 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2171.000000,2837.000000,2837.000000,2171.000000, 0.216753,0.283247,0.283247,0.216753, maf-5-some-pop 851 chr1 34867367 34867368 rs996936 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3953.000000,1055.000000,1055.000000,3953.000000, 0.394669,0.105331,0.105331,0.394669, maf-5-some-pop 851 chr1 34868451 34868452 rs2142532 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1444.000000,3564.000000,3564.000000,1444.000000, 0.144169,0.355831,0.355831,0.144169, maf-5-some-pop,maf-5-all-pops 851 chr1 34875644 34875645 rs11585762 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 13 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1451.000000,3557.000000, 0.289736,0.710264, maf-5-some-pop,maf-5-all-pops 851 chr1 34879049 34879050 rs7530700 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34879682 34879683 rs2359112 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1622.000000,3386.000000,3386.000000,1622.000000, 0.161941,0.338059,0.338059,0.161941, maf-5-some-pop,maf-5-all-pops 851 chr1 34879961 34879962 rs12138639 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3331.000000,1677.000000, 0.665136,0.334864, maf-5-some-pop,maf-5-all-pops 851 chr1 34879995 34879996 rs760509 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1645.000000,3363.000000,3363.000000,1645.000000, 0.164237,0.335763,0.335763,0.164237, maf-5-some-pop,maf-5-all-pops 851 chr1 34883584 34883585 rs6678114 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3560.000000,1448.000000, 0.710863,0.289137, maf-5-some-pop,maf-5-all-pops 851 chr1 34883743 34883744 rs6693232 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 851 chr1 34888151 34888152 rs909481 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4868.000000,140.000000,140.000000,4868.000000, 0.486022,0.013978,0.013978,0.486022, maf-5-some-pop,genotype-conflict 851 chr1 34890595 34890596 rs2075931 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3517.000000,1491.000000,1491.000000,3517.000000, 0.351138,0.148862,0.148862,0.351138, maf-5-some-pop 851 chr1 34892912 34892913 rs1883109 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3592.000000,1416.000000,1416.000000,3592.000000, 0.358626,0.141374,0.141374,0.358626, maf-5-some-pop,microattr-tpa 851 chr1 34894959 34894960 rs2038008 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3900.000000,1108.000000,1108.000000,3900.000000, 0.389377,0.110623,0.110623,0.389377, maf-5-some-pop,maf-5-all-pops 851 chr1 34895008 34895009 rs17385253 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 910.000000,4098.000000, 0.181709,0.818291, maf-5-some-pop,genotype-conflict 851 chr1 34897789 34897790 rs16836694 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 851 chr1 34902438 34902439 rs16836702 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop 851 chr1 34902574 34902575 rs12098170 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop,genotype-conflict 851 chr1 34902685 34902686 rs1883107 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1996.000000,3012.000000,3012.000000,1996.000000, 0.199281,0.300719,0.300719,0.199281, maf-5-some-pop,maf-5-all-pops 851 chr1 34902909 34902910 rs4653032 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1157.000000,3851.000000, 0.231030,0.768970, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34907147 34907148 rs10753308 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1903.000000,3105.000000, 0.379992,0.620008, maf-5-some-pop,maf-5-all-pops 851 chr1 34910757 34910758 rs10799058 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops 851 chr1 34913552 34913553 rs11578724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,maf-5-all-pops 851 chr1 34913705 34913706 rs11802170 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop 851 chr1 34915050 34915051 rs6681948 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop,maf-5-all-pops 851 chr1 34915393 34915394 rs12134720 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 851 chr1 34915675 34915676 rs10489377 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1002.000000,4006.000000,4006.000000,1002.000000, 0.100040,0.399960,0.399960,0.100040, maf-5-some-pop,maf-5-all-pops 851 chr1 34916120 34916121 rs4653036 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2621.000000,2387.000000, 0.523363,0.476637, maf-5-some-pop,genotype-conflict 851 chr1 34916388 34916389 rs10799059 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1338.000000,3670.000000, 0.267173,0.732827, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34921612 34921613 rs12035126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 999.000000,4009.000000, 0.199481,0.800519, maf-5-some-pop 851 chr1 34922947 34922948 rs12086243 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop 851 chr1 34926876 34926877 rs2075927 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,GMI,HGBASE,ILLUMINA-UK,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4920.000000,88.000000,88.000000,4920.000000, 0.491214,0.008786,0.008786,0.491214, maf-5-some-pop,genotype-conflict 851 chr1 34928320 34928321 rs6425895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2872.000000,2136.000000, 0.573482,0.426518, maf-5-some-pop,maf-5-all-pops 851 chr1 34928440 34928441 rs7544781 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3027.000000,1981.000000, 0.604433,0.395567, maf-5-some-pop,maf-5-all-pops 851 chr1 34930255 34930256 rs7545742 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 851 chr1 34930460 34930461 rs4653042 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops 851 chr1 34931679 34931680 rs10799060 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3115.000000,1893.000000, 0.622005,0.377995, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34931950 34931951 rs12409604 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop 851 chr1 34933085 34933086 rs750882 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 791.000000,4217.000000,4217.000000,791.000000, 0.078974,0.421026,0.421026,0.078974, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34938131 34938132 rs10914956 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34939338 34939339 rs11586990 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4474.000000,534.000000, 0.893371,0.106629, maf-5-some-pop 851 chr1 34939966 34939967 rs798069 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1369.000000,3639.000000,3639.000000,1369.000000, 0.136681,0.363319,0.363319,0.136681, maf-5-some-pop,maf-5-all-pops 851 chr1 34943762 34943763 rs10914958 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 851 chr1 34944590 34944591 rs41416648 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4149.000000,859.000000, 0.828474,0.171526, maf-5-some-pop,genotype-conflict 851 chr1 34945038 34945039 rs3905177 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop,genotype-conflict 851 chr1 34951420 34951421 rs7536493 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop 851 chr1 34951570 34951571 rs3905174 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 670.000000,4338.000000,4338.000000,670.000000, 0.066893,0.433107,0.433107,0.066893, maf-5-some-pop,genotype-conflict 851 chr1 34951595 34951596 rs3905173 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3481.000000,1527.000000,1527.000000,3481.000000, 0.347544,0.152456,0.152456,0.347544, maf-5-some-pop,genotype-conflict 851 chr1 34951652 34951653 rs12047023 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 994.000000,4014.000000, 0.198482,0.801518, maf-5-some-pop 851 chr1 34953855 34953856 rs4653045 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1936.000000,3072.000000, 0.386581,0.613419, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34959387 34959388 rs2359108 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 662.000000,4346.000000,4346.000000,662.000000, 0.066094,0.433906,0.433906,0.066094, maf-5-some-pop 851 chr1 34959884 34959885 rs719355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop 851 chr1 34964353 34964354 rs4652840 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 634.000000,4374.000000, 0.126597,0.873403, maf-5-some-pop,genotype-conflict 851 chr1 34981176 34981177 rs12566683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34982040 34982041 rs6694043 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1562.000000,3446.000000, 0.311901,0.688099, maf-5-some-pop,maf-5-all-pops,genotype-conflict 851 chr1 34982226 34982227 rs2359104 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4375.000000,633.000000,633.000000,4375.000000, 0.436801,0.063199,0.063199,0.436801, maf-5-some-pop 851 chr1 34983308 34983309 rs4652846 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2996.000000,2012.000000, 0.598243,0.401757, maf-5-some-pop,maf-5-all-pops 851 chr1 34984485 34984486 rs13374666 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 851 chr1 34984804 34984805 rs12038357 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4404.000000,604.000000, 0.879393,0.120607, maf-5-some-pop 851 chr1 34985458 34985459 rs3845485 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 635.000000,4373.000000,4373.000000,635.000000, 0.063399,0.436601,0.436601,0.063399, maf-5-some-pop,genotype-conflict 851 chr1 34986347 34986348 rs9988545 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop 851 chr1 34987504 34987505 rs11807939 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,JMKIDD_LAB,KRIBB_YJKIM, 2 A,C, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop 851 chr1 34994990 34994991 rs4587532 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop 851 chr1 34995027 34995028 rs2359382 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop,microattr-tpa 852 chr1 35009881 35009882 rs4653054 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop 852 chr1 35015667 35015668 rs12089438 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop 852 chr1 35024603 35024604 rs12097329 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop,genotype-conflict 852 chr1 35028056 35028057 rs10799067 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1588.000000,3420.000000, 0.317093,0.682907, maf-5-some-pop,maf-5-all-pops 852 chr1 35031032 35031033 rs10737382 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3227.000000,1781.000000, 0.644369,0.355631, maf-5-some-pop,maf-5-all-pops 852 chr1 35038295 35038296 rs13374583 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,WUGSC_SSAHASNP, 2 C,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 852 chr1 35042286 35042287 rs6677231 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 852 chr1 35042497 35042498 rs6671294 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1138.000000,3870.000000, 0.227236,0.772764, maf-5-some-pop,maf-5-all-pops 852 chr1 35045586 35045587 rs12566354 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 3322.000000,1686.000000, 0.663339,0.336661, maf-5-some-pop,maf-5-all-pops 852 chr1 35045882 35045883 rs10914979 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop 852 chr1 35050406 35050407 rs12033008 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2551.000000,2457.000000, 0.509385,0.490615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 852 chr1 35051744 35051745 rs12039962 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2521.000000,2487.000000, 0.503395,0.496605, maf-5-some-pop,genotype-conflict 852 chr1 35052180 35052181 rs1342476 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 852 chr1 35055047 35055048 rs6679913 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3367.000000,1641.000000, 0.672324,0.327676, maf-5-some-pop,maf-5-all-pops 852 chr1 35061402 35061403 rs10799073 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 937.000000,4071.000000, 0.187101,0.812899, maf-5-some-pop,genotype-conflict 852 chr1 35064737 35064738 rs10914989 0 + A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 3 A,C,G, 1030.000000,10.000000,3968.000000, 0.205671,0.001997,0.792332, maf-5-some-pop,genotype-conflict 852 chr1 35072297 35072298 rs4653061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1223.000000,3785.000000, 0.244209,0.755791, maf-5-some-pop,microattr-tpa 852 chr1 35072386 35072387 rs4653062 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1223.000000,3785.000000, 0.244209,0.755791, maf-5-some-pop 852 chr1 35074859 35074860 rs10914991 0 + A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3341.000000,1667.000000, 0.667133,0.332867, maf-5-some-pop,maf-5-all-pops,genotype-conflict 852 chr1 35079249 35079250 rs12117895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1203.000000,3805.000000, 0.240216,0.759784, maf-5-some-pop 852 chr1 35080803 35080804 rs41452749 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,JMKIDD_LAB, 4 A,C,G,T, 4977.000000,31.000000,31.000000,4977.000000, 0.496905,0.003095,0.003095,0.496905, 852 chr1 35082967 35082968 rs2147384 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3812.000000,1196.000000, 0.761182,0.238818, maf-5-some-pop 852 chr1 35087724 35087725 rs10799074 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 884.000000,4124.000000, 0.176518,0.823482, maf-5-some-pop 852 chr1 35088483 35088484 rs4653067 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,maf-5-all-pops,genotype-conflict 852 chr1 35090748 35090749 rs2025499 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 8.000000,5000.000000, 0.001597,0.998403, maf-5-some-pop 852 chr1 35104321 35104322 rs10493061 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop,maf-5-all-pops 852 chr1 35114267 35114268 rs12036748 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 523.000000,4485.000000, 0.104433,0.895567, maf-5-some-pop 852 chr1 35115541 35115542 rs17561354 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop,genotype-conflict 852 chr1 35116618 35116619 rs4653072 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop,genotype-conflict 852 chr1 35117883 35117884 rs9787346 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 852 chr1 35117924 35117925 rs9787093 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 852 chr1 35118030 35118031 rs506361 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3808.000000,1200.000000,1200.000000,3808.000000, 0.380192,0.119808,0.119808,0.380192, maf-5-some-pop 852 chr1 35118281 35118282 rs9787098 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2516.000000,2492.000000, 0.502396,0.497604, maf-5-some-pop,maf-5-all-pops 852 chr1 35118334 35118335 rs509788 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1834.000000,3174.000000,3174.000000,1834.000000, 0.183107,0.316893,0.316893,0.183107, maf-5-some-pop,maf-5-all-pops,genotype-conflict 852 chr1 35118665 35118666 rs12039039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop 852 chr1 35119411 35119412 rs12041611 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop 852 chr1 35121925 35121926 rs9787040 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop,genotype-conflict 852 chr1 35123065 35123066 rs17502414 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop,genotype-conflict 852 chr1 35126220 35126221 rs4491030 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,maf-5-all-pops,genotype-conflict 852 chr1 35126937 35126938 rs10493062 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1731.000000,3277.000000, 0.345647,0.654353, maf-5-some-pop,maf-5-all-pops 853 chr1 35128636 35128637 rs927656 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1421.000000,3587.000000,3587.000000,1421.000000, 0.141873,0.358127,0.358127,0.141873, maf-5-some-pop,maf-5-all-pops 853 chr1 35130958 35130959 rs932743 0 - G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 853 chr1 35133262 35133263 rs4653074 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3336.000000,1672.000000, 0.666134,0.333866, maf-5-some-pop,maf-5-all-pops 853 chr1 35133397 35133398 rs4653075 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1167.000000,3841.000000, 0.233027,0.766973, maf-5-some-pop,genotype-conflict 853 chr1 35133716 35133717 rs10915012 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3678.000000,1330.000000, 0.734425,0.265575, maf-5-some-pop,maf-5-all-pops 853 chr1 35136204 35136205 rs4653077 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1331.000000,3677.000000, 0.265775,0.734225, maf-5-some-pop,maf-5-all-pops 853 chr1 35137980 35137981 rs4652854 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 551.000000,4457.000000, 0.110024,0.889976, maf-5-some-pop 853 chr1 35146979 35146980 rs491257 0 + A A A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 3 A,C,G, 3309.000000,111.000000,1588.000000, 0.660743,0.022164,0.317093, maf-5-some-pop,maf-5-all-pops 853 chr1 35148447 35148448 rs725790 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4430.000000,578.000000,578.000000,4430.000000, 0.442292,0.057708,0.057708,0.442292, maf-5-some-pop 853 chr1 35149755 35149756 rs41495144 0 - G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 853 chr1 35150173 35150174 rs618675 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop,maf-5-all-pops 853 chr1 35153752 35153753 rs10915018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,genotype-conflict 853 chr1 35154012 35154013 rs565742 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3770.000000,1238.000000, 0.752796,0.247204, maf-5-some-pop,maf-5-all-pops,genotype-conflict 853 chr1 35156065 35156066 rs10915019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 940.000000,4068.000000, 0.187700,0.812300, maf-5-some-pop,maf-5-all-pops,genotype-conflict 853 chr1 35157715 35157716 rs10915020 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop,maf-5-all-pops 853 chr1 35157990 35157991 rs7556242 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3868.000000,1140.000000, 0.772364,0.227636, maf-5-some-pop,maf-5-all-pops,genotype-conflict 853 chr1 35159858 35159859 rs16836898 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4368.000000,640.000000, 0.872204,0.127796, maf-5-some-pop 853 chr1 35159911 35159912 rs16836900 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 858.000000,4150.000000, 0.171326,0.828674, maf-5-some-pop,genotype-conflict 853 chr1 35160304 35160305 rs12030047 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4370.000000,638.000000, 0.872604,0.127396, maf-5-some-pop 853 chr1 35160341 35160342 rs12033266 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop 853 chr1 35161455 35161456 rs17473294 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop 853 chr1 35161801 35161802 rs4320749 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1721.000000,3287.000000, 0.343650,0.656350, maf-5-some-pop,maf-5-all-pops,genotype-conflict 853 chr1 35162738 35162739 rs1336624 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1720.000000,3288.000000, 0.343450,0.656550, maf-5-some-pop,maf-5-all-pops 853 chr1 35165971 35165972 rs1932768 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 622.000000,4386.000000,4386.000000,622.000000, 0.062101,0.437899,0.437899,0.062101, maf-5-some-pop 853 chr1 35183637 35183638 rs684524 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1088.000000,3920.000000,3920.000000,1088.000000, 0.108626,0.391374,0.391374,0.108626, maf-5-some-pop,maf-5-all-pops 853 chr1 35183677 35183678 rs684136 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1052.000000,3956.000000,3956.000000,1052.000000, 0.105032,0.394968,0.394968,0.105032, maf-5-some-pop,maf-5-all-pops 853 chr1 35185844 35185845 rs10489658 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2696.000000,2312.000000,2312.000000,2696.000000, 0.269169,0.230831,0.230831,0.269169, maf-5-some-pop 853 chr1 35190137 35190138 rs1741953 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3729.000000,1279.000000,1279.000000,3729.000000, 0.372304,0.127696,0.127696,0.372304, maf-5-some-pop,maf-5-all-pops 853 chr1 35208697 35208698 rs9426007 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3980.000000,1028.000000, 0.794728,0.205272, maf-5-some-pop,maf-5-all-pops 853 chr1 35217375 35217376 rs585268 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2380.000000,2628.000000,2628.000000,2380.000000, 0.237620,0.262380,0.262380,0.237620, maf-5-some-pop,maf-5-all-pops 853 chr1 35217965 35217966 rs1741971 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2758.000000,2250.000000,2250.000000,2758.000000, 0.275359,0.224641,0.224641,0.275359, maf-5-some-pop,maf-5-all-pops 853 chr1 35218076 35218077 rs692923 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1632.000000,3376.000000, 0.325879,0.674121, maf-5-some-pop 853 chr1 35223344 35223345 rs3738345 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1320.000000,3688.000000, 0.263578,0.736422, maf-5-some-pop,maf-5-all-pops 853 chr1 35224311 35224312 rs2093185 0 - T T A/C genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2271.000000,2737.000000,2737.000000,2271.000000, 0.226737,0.273263,0.273263,0.226737, maf-5-some-pop,maf-5-all-pops 853 chr1 35251668 35251669 rs13774 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SEQUENOM,SI_EXO,SSMP,TSC-CSHL, 4 A,C,G,T, 307.000000,4701.000000,4701.000000,307.000000, 0.030651,0.469349,0.469349,0.030651, maf-5-some-pop 853 chr1 35251734 35251735 rs9118 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 15 1000GENOMES,AFFY,BGI,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SEQUENOM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 853 chr1 35253375 35253376 rs483721 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1190.000000,3818.000000,3818.000000,1190.000000, 0.118810,0.381190,0.381190,0.118810, maf-5-some-pop,maf-5-all-pops 854 chr1 35259960 35259961 rs1764390 0 + A A A/C/G/T genomic single unknown 0 0 coding-synon,missense exact 1 SingleClassQuadAllelic,InconsistentAlleles 31 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SEQUENOM,SI_EXO,SSMP,TISHKOFF,WICVAR,YUSUKE, 2 A,G, 1896.000000,3112.000000, 0.378594,0.621406, maf-5-some-pop 854 chr1 35261231 35261232 rs705193 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 3584.000000,1424.000000, 0.715655,0.284345, maf-5-some-pop,maf-5-all-pops 854 chr1 35261404 35261405 rs3738353 0 + T T G/T genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 G,T, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 854 chr1 35268367 35268368 rs1764392 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2515.000000,2493.000000, 0.502196,0.497804, maf-5-some-pop,maf-5-all-pops 854 chr1 35268692 35268693 rs558969 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2391.000000,2617.000000, 0.477436,0.522564, maf-5-some-pop,maf-5-all-pops 854 chr1 35283938 35283939 rs2145390 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2104.000000,2904.000000,2904.000000,2104.000000, 0.210064,0.289936,0.289936,0.210064, maf-5-some-pop,maf-5-all-pops 854 chr1 35289038 35289039 rs7526035 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3005.000000,2003.000000, 0.600040,0.399960, maf-5-some-pop,maf-5-all-pops,microattr-tpa 854 chr1 35289872 35289873 rs1741972 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4638.000000,370.000000,370.000000,4638.000000, 0.463059,0.036941,0.036941,0.463059, maf-5-some-pop 854 chr1 35299303 35299304 rs1570099 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop 854 chr1 35299571 35299572 rs12064230 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 854 chr1 35303774 35303775 rs6655940 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 887.000000,4121.000000, 0.177117,0.822883, maf-5-some-pop 854 chr1 35304140 35304141 rs6693844 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2851.000000,2157.000000, 0.569289,0.430711, maf-5-some-pop,maf-5-all-pops 854 chr1 35306493 35306494 rs12074386 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop,genotype-conflict 854 chr1 35307200 35307201 rs4653105 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 889.000000,4119.000000, 0.177516,0.822484, maf-5-some-pop 854 chr1 35307678 35307679 rs4271177 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2861.000000,2147.000000, 0.571286,0.428714, maf-5-some-pop,maf-5-all-pops,genotype-conflict 854 chr1 35314840 35314841 rs12128624 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2903.000000,2105.000000, 0.579673,0.420327, maf-5-some-pop,maf-5-all-pops 854 chr1 35315736 35315737 rs6703979 0 + C C C/T genomic single unknown 0 0 intron exact 1 MixedObserved 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2983.000000,2025.000000, 0.595647,0.404353, maf-5-some-pop,maf-5-all-pops,genotype-conflict 854 chr1 35328244 35328245 rs4653109 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2199.000000,2809.000000, 0.439097,0.560903, maf-5-some-pop 854 chr1 35328274 35328275 rs4653110 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1705.000000,384.000000, 0.816180,0.183820, maf-5-some-pop,maf-5-all-pops 854 chr1 35333125 35333126 rs12727066 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 805.000000,4203.000000, 0.160743,0.839257, maf-5-some-pop,maf-5-all-pops 854 chr1 35354275 35354276 rs4653113 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 854 chr1 35354821 35354822 rs11264152 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop 854 chr1 35357859 35357860 rs6425921 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 854 chr1 35368474 35368475 rs7517588 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4962.000000,46.000000, 0.990815,0.009185, maf-5-some-pop 854 chr1 35368759 35368760 rs6686484 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3502.000000,1506.000000, 0.699281,0.300719, maf-5-some-pop,genotype-conflict 854 chr1 35368770 35368771 rs11264173 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3707.000000,1301.000000, 0.740216,0.259784, maf-5-some-pop 854 chr1 35369013 35369014 rs10493064 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop 854 chr1 35373373 35373374 rs3587 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WIAF, 2 C,T, 1783.000000,3225.000000, 0.356030,0.643970, maf-5-some-pop 854 chr1 35378933 35378934 rs4652869 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 G,T, 1742.000000,3266.000000, 0.347843,0.652157, maf-5-some-pop,genotype-conflict 854 chr1 35387314 35387315 rs12078977 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 407.000000,4601.000000, 0.081270,0.918730, maf-5-some-pop 855 chr1 35397151 35397152 rs11264214 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4572.000000,436.000000, 0.912939,0.087061, maf-5-some-pop 855 chr1 35411600 35411601 rs6664026 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1237.000000,3771.000000, 0.247005,0.752995, maf-5-some-pop,genotype-conflict 855 chr1 35414467 35414468 rs11809952 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, maf-5-some-pop 855 chr1 35416759 35416760 rs12568660 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1588.000000,3420.000000, 0.317093,0.682907, maf-5-some-pop,maf-5-all-pops 855 chr1 35438479 35438480 rs7538699 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,genotype-conflict 855 chr1 35440104 35440105 rs11802362 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop,genotype-conflict 855 chr1 35451538 35451539 rs6688091 0 + C C A/C genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 855 chr1 35462486 35462487 rs12407202 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4227.000000,781.000000, 0.844050,0.155950, maf-5-some-pop 855 chr1 35466985 35466986 rs16837151 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 855 chr1 35483406 35483407 rs7514265 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 334.000000,4674.000000, 0.066693,0.933307, maf-5-some-pop,genotype-conflict 855 chr1 35484017 35484018 rs12401429 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3430.000000,1578.000000, 0.684904,0.315096, maf-5-some-pop 855 chr1 35489691 35489692 rs4609395 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop 855 chr1 35513350 35513351 rs12564302 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 3370.000000,1638.000000, 0.672923,0.327077, maf-5-some-pop,genotype-conflict 856 chr1 35526101 35526102 rs12078976 0 + C C C/T genomic single unknown 0 0 intron exact 1 MixedObserved 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop 856 chr1 35526677 35526678 rs10908322 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1485.000000,3523.000000, 0.296526,0.703474, maf-5-some-pop 856 chr1 35555193 35555194 rs6661856 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 856 chr1 35588543 35588544 rs3002680 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 279.000000,4729.000000,4729.000000,279.000000, 0.027855,0.472145,0.472145,0.027855, maf-5-some-pop 856 chr1 35598113 35598114 rs2971426 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1530.000000,3478.000000, 0.305511,0.694489, maf-5-some-pop,maf-5-all-pops 856 chr1 35609661 35609662 rs6425933 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1921.000000,3087.000000, 0.383586,0.616414, maf-5-some-pop,maf-5-all-pops 856 chr1 35617630 35617631 rs2335466 0 + A A A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 856 chr1 35628788 35628789 rs6425939 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 1707.000000,3301.000000, 0.340855,0.659145, maf-5-some-pop,maf-5-all-pops 856 chr1 35628898 35628899 rs7522075 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 3301.000000,1707.000000, 0.659145,0.340855, maf-5-some-pop,maf-5-all-pops 856 chr1 35635452 35635453 rs12064550 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop 856 chr1 35636008 35636009 rs3002665 0 - C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 8 1000GENOMES,ABI,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 95.000000,4913.000000,4913.000000,95.000000, 0.009485,0.490515,0.490515,0.009485, maf-5-some-pop 856 chr1 35636226 35636227 rs11264110 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2452.000000,2556.000000, 0.489617,0.510383, maf-5-some-pop 856 chr1 35641607 35641608 rs1498111 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2988.000000,2020.000000, 0.596645,0.403355, maf-5-some-pop 856 chr1 35645342 35645343 rs11264112 0 - A A G/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 3397.000000,1611.000000,1611.000000,3397.000000, 0.339157,0.160843,0.160843,0.339157, maf-5-some-pop 857 chr1 35654724 35654725 rs10908385 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop,genotype-conflict 857 chr1 35656063 35656064 rs11264114 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2034.000000,2974.000000, 0.406150,0.593850, maf-5-some-pop 857 chr1 35656663 35656664 rs11264115 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1990.000000,3018.000000, 0.397364,0.602636, maf-5-some-pop 857 chr1 35667661 35667662 rs7542630 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1339.000000,3669.000000, 0.267372,0.732628, maf-5-some-pop,genotype-conflict 857 chr1 35674310 35674311 rs7543044 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3178.000000,1830.000000, 0.634585,0.365415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 857 chr1 35675763 35675764 rs925718 0 - G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 857 chr1 35678441 35678442 rs12044220 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 857 chr1 35678748 35678749 rs10796919 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop,genotype-conflict 857 chr1 35681226 35681227 rs12091697 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 857 chr1 35687202 35687203 rs668092 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1996.000000,3012.000000, 0.398562,0.601438, maf-5-some-pop,maf-5-all-pops 857 chr1 35687893 35687894 rs12026122 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop 857 chr1 35691259 35691260 rs1188340 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP, 2 A,G, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop 857 chr1 35719902 35719903 rs12065308 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop 857 chr1 35722617 35722618 rs11264123 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 857 chr1 35731112 35731113 rs7517214 0 + A A A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,G, 4232.000000,696.000000,80.000000, 0.845048,0.138978,0.015974, maf-5-some-pop 857 chr1 35736852 35736853 rs561905 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2822.000000,2186.000000,2186.000000,2822.000000, 0.281749,0.218251,0.218251,0.281749, maf-5-some-pop 857 chr1 35742790 35742791 rs12087292 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,C, 700.000000,4308.000000, 0.139776,0.860224, maf-5-some-pop 857 chr1 35754524 35754525 rs12059022 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop 857 chr1 35755402 35755403 rs12562336 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 700.000000,4308.000000, 0.139776,0.860224, maf-5-some-pop 857 chr1 35772866 35772867 rs544621 0 - A A G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2140.000000,2868.000000,2868.000000,2140.000000, 0.213658,0.286342,0.286342,0.213658, maf-5-some-pop 857 chr1 35776602 35776603 rs12075713 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1274.000000,3734.000000, 0.254393,0.745607, maf-5-some-pop 858 chr1 35792435 35792436 rs12038650 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4295.000000,713.000000, 0.857628,0.142372, maf-5-some-pop 858 chr1 35814933 35814934 rs12093076 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop 858 chr1 35843028 35843029 rs659215 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1430.000000,3578.000000,3578.000000,1430.000000, 0.142772,0.357228,0.357228,0.142772, maf-5-some-pop,genotype-conflict 858 chr1 35854156 35854157 rs10908393 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop,genotype-conflict 858 chr1 35854801 35854802 rs11264150 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,T, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 858 chr1 35861848 35861849 rs1188620 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2870.000000,2138.000000,2138.000000,2870.000000, 0.286542,0.213458,0.213458,0.286542, maf-5-some-pop 858 chr1 35862655 35862656 rs3768336 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 858 chr1 35864570 35864571 rs12040345 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 17 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,genotype-conflict 858 chr1 35870350 35870351 rs11264153 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop,genotype-conflict 858 chr1 35871643 35871644 rs3768337 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,YUSUKE, 2 A,G, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop 858 chr1 35881650 35881651 rs12046723 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop 858 chr1 35888146 35888147 rs1211184 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2530.000000,2478.000000, 0.505192,0.494808, maf-5-some-pop,maf-5-all-pops 858 chr1 35892370 35892371 rs6667228 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop 858 chr1 35899005 35899006 rs1188641 0 - A A G/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 4347.000000,661.000000,661.000000,4347.000000, 0.434006,0.065994,0.065994,0.434006, maf-5-some-pop 858 chr1 35901221 35901222 rs10157137 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop 858 chr1 35901353 35901354 rs10399590 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop,genotype-conflict 858 chr1 35902388 35902389 rs1188635 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4949.000000,59.000000,59.000000,4949.000000, 0.494109,0.005891,0.005891,0.494109, maf-5-some-pop 858 chr1 35902834 35902835 rs12022675 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop 858 chr1 35908450 35908451 rs2275247 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2743.000000,2265.000000,2265.000000,2743.000000, 0.273862,0.226138,0.226138,0.273862, maf-5-some-pop,microattr-tpa 858 chr1 35910695 35910696 rs950847 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 819.000000,4189.000000, 0.163538,0.836462, maf-5-some-pop 858 chr1 35910847 35910848 rs950848 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4525.000000,483.000000, 0.903554,0.096446, maf-5-some-pop,genotype-conflict 859 chr1 35919177 35919178 rs16837364 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 14 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop 859 chr1 35919460 35919461 rs12563006 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 G,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 859 chr1 35919978 35919979 rs10796920 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 19 1000GENOMES,ABI,AFFY,APPLERA_GI,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 859 chr1 35929007 35929008 rs11583031 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,KRIBB_YJKIM, 2 A,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 859 chr1 35951037 35951038 rs1203137 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2442.000000,2566.000000,2566.000000,2442.000000, 0.243810,0.256190,0.256190,0.243810, maf-5-some-pop,maf-5-all-pops,genotype-conflict 859 chr1 35974468 35974469 rs1635718 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 859 chr1 35983221 35983222 rs11264168 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop 859 chr1 35988857 35988858 rs11264169 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1466.000000,3542.000000, 0.292732,0.707268, maf-5-some-pop 859 chr1 35989902 35989903 rs11264170 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1454.000000,3554.000000, 0.290335,0.709665, maf-5-some-pop 859 chr1 36001394 36001395 rs16866287 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop 859 chr1 36011033 36011034 rs12408030 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop 859 chr1 36015010 36015011 rs7523017 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 859 chr1 36018061 36018062 rs6703605 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3189.000000,1819.000000, 0.636781,0.363219, maf-5-some-pop,genotype-conflict 859 chr1 36027710 36027711 rs2074676 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1748.000000,3260.000000,3260.000000,1748.000000, 0.174521,0.325479,0.325479,0.174521, maf-5-some-pop 859 chr1 36030320 36030321 rs11264175 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 859 chr1 36032656 36032657 rs2158594 0 - C C A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 481.000000,4527.000000,4527.000000,481.000000, 0.048023,0.451977,0.451977,0.048023, maf-5-some-pop 860 chr1 36056809 36056810 rs41422144 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4695.000000,313.000000,313.000000,4695.000000, 0.468750,0.031250,0.031250,0.468750, maf-5-some-pop 860 chr1 36057209 36057210 rs41375048 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,AFFY_GWHS,JMKIDD_LAB,SSMP, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 860 chr1 36071289 36071290 rs3767700 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop,genotype-conflict 860 chr1 36085895 36085896 rs16866317 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop,genotype-conflict 860 chr1 36099199 36099200 rs6668101 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 3829.000000,1179.000000, 0.764577,0.235423, maf-5-some-pop 860 chr1 36107509 36107510 rs676614 0 - C C G/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PHARMGKB_PPII,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2406.000000,2602.000000,2602.000000,2406.000000, 0.240216,0.259784,0.259784,0.240216, maf-5-some-pop,maf-5-all-pops,genotype-conflict 860 chr1 36108704 36108705 rs16866321 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop,genotype-conflict 860 chr1 36109609 36109610 rs503540 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 571.000000,4437.000000,4437.000000,571.000000, 0.057009,0.442991,0.442991,0.057009, maf-5-some-pop 860 chr1 36115138 36115139 rs534436 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4640.000000,368.000000,368.000000,4640.000000, 0.463259,0.036741,0.036741,0.463259, maf-5-some-pop 860 chr1 36115814 36115815 rs41457352 0 - A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 860 chr1 36115866 36115867 rs41421045 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 309.000000,4699.000000,4699.000000,309.000000, 0.030851,0.469149,0.469149,0.030851, maf-5-some-pop 860 chr1 36116742 36116743 rs1333648 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 203.000000,4805.000000,4805.000000,203.000000, 0.020268,0.479732,0.479732,0.020268, maf-5-some-pop 860 chr1 36119363 36119364 rs10489937 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 311.000000,4697.000000,4697.000000,311.000000, 0.031050,0.468950,0.468950,0.031050, maf-5-some-pop,microattr-tpa,genotype-conflict 860 chr1 36121387 36121388 rs516694 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4909.000000,99.000000,99.000000,4909.000000, 0.490116,0.009884,0.009884,0.490116, maf-5-some-pop 860 chr1 36122609 36122610 rs867936 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3743.000000,1265.000000, 0.747404,0.252596, maf-5-some-pop 860 chr1 36126658 36126659 rs6697778 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 1264.000000,3744.000000, 0.252396,0.747604, maf-5-some-pop 860 chr1 36149744 36149745 rs11264186 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4338.000000,670.000000, 0.866214,0.133786, maf-5-some-pop 860 chr1 36151124 36151125 rs636658 0 - C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 860 chr1 36153829 36153830 rs2095247 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 484.000000,4524.000000,4524.000000,484.000000, 0.048323,0.451677,0.451677,0.048323, maf-5-some-pop 860 chr1 36161382 36161383 rs1333647 0 - C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2566.000000,2442.000000,2442.000000,2566.000000, 0.256190,0.243810,0.243810,0.256190, maf-5-some-pop,maf-5-all-pops 860 chr1 36161396 36161397 rs12022284 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 860 chr1 36162792 36162793 rs11264190 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop,genotype-conflict 860 chr1 36172194 36172195 rs6688464 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2569.000000,2439.000000, 0.512979,0.487021, maf-5-some-pop,maf-5-all-pops,microattr-tpa 861 chr1 36176508 36176509 rs6696354 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,genotype-conflict 861 chr1 36200389 36200390 rs609070 0 - G G C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4887.000000,121.000000,121.000000,4887.000000, 0.487919,0.012081,0.012081,0.487919, maf-5-some-pop,genotype-conflict 861 chr1 36200820 36200821 rs6660890 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4464.000000,544.000000, 0.891374,0.108626, maf-5-some-pop 861 chr1 36205165 36205166 rs577483 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2402.000000,2606.000000, 0.479633,0.520367, maf-5-some-pop,microattr-tpa,genotype-conflict 861 chr1 36205733 36205734 rs7532074 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3876.000000,1132.000000, 0.773962,0.226038, maf-5-some-pop 861 chr1 36216834 36216835 rs535638 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2606.000000,2402.000000,2402.000000,2606.000000, 0.260184,0.239816,0.239816,0.260184, maf-5-some-pop,microattr-tpa 861 chr1 36220557 36220558 rs16822339 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 1546.000000,3462.000000, 0.308706,0.691294, maf-5-some-pop 861 chr1 36232041 36232042 rs11264201 0 + T T A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop,rs-cluster-nonoverlapping-alleles 861 chr1 36298347 36298348 rs963879 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 862 chr1 36315930 36315931 rs7354931 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop 862 chr1 36316570 36316571 rs4652895 0 + A A A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2549.000000,2459.000000, 0.508986,0.491014, maf-5-some-pop,genotype-conflict 862 chr1 36317040 36317041 rs3820276 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 862 chr1 36317454 36317455 rs6425962 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop 862 chr1 36317834 36317835 rs6674772 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4439.000000,569.000000, 0.886382,0.113618, maf-5-some-pop 862 chr1 36345797 36345798 rs11263830 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 862 chr1 36371418 36371419 rs2791961 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 862 chr1 36373822 36373823 rs645383 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3732.000000,1276.000000, 0.745208,0.254792, maf-5-some-pop,maf-5-all-pops 862 chr1 36375109 36375110 rs581459 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 862 chr1 36395114 36395115 rs617673 0 - A A G/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3805.000000,1203.000000,1203.000000,3805.000000, 0.379892,0.120108,0.120108,0.379892, maf-5-some-pop 862 chr1 36404948 36404949 rs11263842 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3914.000000,1094.000000, 0.781550,0.218450, maf-5-some-pop,genotype-conflict 862 chr1 36407805 36407806 rs12031138 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3156.000000,1852.000000, 0.630192,0.369808, maf-5-some-pop,maf-5-all-pops 862 chr1 36412759 36412760 rs12041193 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3158.000000,1850.000000, 0.630591,0.369409, maf-5-some-pop 862 chr1 36424337 36424338 rs716924 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1440.000000,3568.000000, 0.287540,0.712460, maf-5-some-pop,genotype-conflict 862 chr1 36424475 36424476 rs716926 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1875.000000,3133.000000, 0.374401,0.625599, maf-5-some-pop 863 chr1 36443568 36443569 rs683622 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4501.000000,507.000000,507.000000,4501.000000, 0.449381,0.050619,0.050619,0.449381, maf-5-some-pop,genotype-conflict 863 chr1 36461121 36461122 rs7542179 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1798.000000,3210.000000, 0.359026,0.640974, maf-5-some-pop,maf-5-all-pops,genotype-conflict 863 chr1 36474197 36474198 rs1886343 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 863 chr1 36497348 36497349 rs200842 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4705.000000,303.000000,303.000000,4705.000000, 0.469748,0.030252,0.030252,0.469748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 863 chr1 36551894 36551895 rs408986 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop 863 chr1 36555757 36555758 rs3767703 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop,genotype-conflict 863 chr1 36556866 36556867 rs768000 0 + C C C/T genomic single unknown 0 0 coding-synon,intron exact 1 16 1000GENOMES,ABI,AFFY,APPLERA_GI,BGI,CGAP-GAI,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TSC-CSHL, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop 863 chr1 36557618 36557619 rs2236387 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,APPLERA_GI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 872.000000,4136.000000,4136.000000,872.000000, 0.087061,0.412939,0.412939,0.087061, maf-5-some-pop,genotype-conflict 863 chr1 36559620 36559621 rs274748 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 863 chr1 36559982 36559983 rs4641278 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 863 chr1 36567342 36567343 rs7550047 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop,maf-5-all-pops,genotype-conflict 863 chr1 36568235 36568236 rs7553155 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 407.000000,4601.000000, 0.081270,0.918730, maf-5-some-pop 864 chr1 36577944 36577945 rs274137 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 392.000000,4616.000000,4616.000000,392.000000, 0.039137,0.460863,0.460863,0.039137, maf-5-some-pop 864 chr1 36581977 36581978 rs274132 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 972.000000,4036.000000,4036.000000,972.000000, 0.097045,0.402955,0.402955,0.097045, maf-5-some-pop,maf-5-all-pops 864 chr1 36588401 36588402 rs11263857 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop 864 chr1 36601367 36601368 rs11263860 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2466.000000,2542.000000, 0.492412,0.507588, maf-5-some-pop 864 chr1 36601716 36601717 rs1408558 0 - C C G/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 267.000000,4741.000000,4741.000000,267.000000, 0.026657,0.473343,0.473343,0.026657, maf-5-some-pop 864 chr1 36607926 36607927 rs3767707 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4281.000000,727.000000, 0.854832,0.145168, maf-5-some-pop,genotype-conflict 864 chr1 36611286 36611287 rs6425966 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 903.000000,4105.000000, 0.180312,0.819688, maf-5-some-pop 864 chr1 36613379 36613380 rs7522400 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 975.000000,4033.000000, 0.194688,0.805312, maf-5-some-pop,genotype-conflict 864 chr1 36613703 36613704 rs4653162 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2460.000000,2548.000000, 0.491214,0.508786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 864 chr1 36625555 36625556 rs272828 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4567.000000,441.000000,441.000000,4567.000000, 0.455970,0.044030,0.044030,0.455970, maf-5-some-pop 864 chr1 36627190 36627191 rs272827 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1111.000000,3897.000000,3897.000000,1111.000000, 0.110923,0.389077,0.389077,0.110923, maf-5-some-pop 864 chr1 36627444 36627445 rs4653163 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 G,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop 864 chr1 36627541 36627542 rs4653164 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2620.000000,2388.000000, 0.523163,0.476837, maf-5-some-pop,maf-5-all-pops 864 chr1 36628058 36628059 rs272826 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1481.000000,3527.000000,3527.000000,1481.000000, 0.147863,0.352137,0.352137,0.147863, maf-5-some-pop,genotype-conflict 864 chr1 36628150 36628151 rs272825 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF, 4 A,C,G,T, 4578.000000,430.000000,430.000000,4578.000000, 0.457069,0.042931,0.042931,0.457069, maf-5-some-pop,genotype-conflict 864 chr1 36637707 36637708 rs795047 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2401.000000,2607.000000,2607.000000,2401.000000, 0.239716,0.260284,0.260284,0.239716, maf-5-some-pop,maf-5-all-pops 864 chr1 36639778 36639779 rs562929 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,genotype-conflict 864 chr1 36653539 36653540 rs6680302 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 2199.000000,2809.000000, 0.439097,0.560903, maf-5-some-pop,maf-5-all-pops 864 chr1 36677653 36677654 rs12038275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop 864 chr1 36678609 36678610 rs272819 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 652.000000,4356.000000,4356.000000,652.000000, 0.065096,0.434904,0.434904,0.065096, maf-5-some-pop,genotype-conflict 864 chr1 36681160 36681161 rs1774106 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 355.000000,4653.000000,4653.000000,355.000000, 0.035443,0.464557,0.464557,0.035443, maf-5-some-pop 865 chr1 36704890 36704891 rs7545668 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 865 chr1 36711642 36711643 rs6662146 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1032.000000,3976.000000, 0.206070,0.793930, maf-5-some-pop 865 chr1 36715731 36715732 rs11263868 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop,genotype-conflict 865 chr1 36722384 36722385 rs6673161 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop 865 chr1 36732856 36732857 rs924564 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop 865 chr1 36735837 36735838 rs12123371 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop 865 chr1 36739110 36739111 rs3007221 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,genotype-conflict 865 chr1 36745348 36745349 rs1418252 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 370.000000,4638.000000,4638.000000,370.000000, 0.036941,0.463059,0.463059,0.036941, maf-5-some-pop 865 chr1 36753663 36753664 rs7533278 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4637.000000,371.000000, 0.925919,0.074081, maf-5-some-pop 865 chr1 36754466 36754467 rs6425978 0 + G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4638.000000,370.000000, 0.926118,0.073882, maf-5-some-pop,genotype-conflict 865 chr1 36754521 36754522 rs6425979 0 + C C A/C genomic single unknown 0 0 intron,untranslated-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4637.000000,371.000000, 0.925919,0.074081, maf-5-some-pop,genotype-conflict 865 chr1 36765911 36765912 rs9659735 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3125.000000,1883.000000, 0.624002,0.375998, maf-5-some-pop,maf-5-all-pops,genotype-conflict 865 chr1 36766137 36766138 rs9659765 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1032.000000,3976.000000, 0.206070,0.793930, maf-5-some-pop,genotype-conflict 865 chr1 36818065 36818066 rs10796882 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2793.000000,2215.000000, 0.557708,0.442292, maf-5-some-pop,maf-5-all-pops,genotype-conflict 865 chr1 36818252 36818253 rs12045027 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 865 chr1 36818500 36818501 rs6701013 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop 865 chr1 36820926 36820927 rs11263875 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop 866 chr1 36831263 36831264 rs4451521 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 866 chr1 36835803 36835804 rs6690378 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 4024.000000,984.000000, 0.803514,0.196486, maf-5-some-pop,genotype-conflict 866 chr1 36836317 36836318 rs12741632 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3944.000000,1064.000000, 0.787540,0.212460, maf-5-some-pop 866 chr1 36836350 36836351 rs6425984 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1035.000000,3973.000000, 0.206669,0.793331, maf-5-some-pop,genotype-conflict 866 chr1 36841848 36841849 rs3007220 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 866 chr1 36847765 36847766 rs4653184 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop 866 chr1 36855693 36855694 rs1339766 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2187.000000,2821.000000, 0.436701,0.563299, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36855956 36855957 rs1339767 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 1902.000000,3106.000000, 0.379792,0.620208, maf-5-some-pop,maf-5-all-pops 866 chr1 36856672 36856673 rs2994004 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop 866 chr1 36857140 36857141 rs3007212 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop,genotype-conflict 866 chr1 36860799 36860800 rs16822798 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop,maf-5-all-pops 866 chr1 36872664 36872665 rs12070076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1292.000000,3716.000000, 0.257987,0.742013, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36872763 36872764 rs12070136 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36873248 36873249 rs16822818 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop,genotype-conflict 866 chr1 36873317 36873318 rs6696621 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3723.000000,1285.000000, 0.743411,0.256589, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36874241 36874242 rs16822823 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3719.000000,1289.000000, 0.742612,0.257388, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36878023 36878024 rs883805 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,maf-5-all-pops 866 chr1 36883945 36883946 rs16822888 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1936.000000,3072.000000, 0.386581,0.613419, maf-5-some-pop,maf-5-all-pops 866 chr1 36897176 36897177 rs946680 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,genotype-conflict 866 chr1 36904759 36904760 rs4652914 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop,maf-5-all-pops 866 chr1 36909384 36909385 rs10908303 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops 866 chr1 36914541 36914542 rs10493075 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop,genotype-conflict 866 chr1 36915013 36915014 rs10493077 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,genotype-conflict 866 chr1 36915104 36915105 rs16823025 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 675.000000,4333.000000, 0.134784,0.865216, maf-5-some-pop,genotype-conflict 866 chr1 36917300 36917301 rs11811387 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3839.000000,1169.000000, 0.766573,0.233427, maf-5-some-pop,genotype-conflict 866 chr1 36920952 36920953 rs16823037 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop,maf-5-all-pops 866 chr1 36922958 36922959 rs12048722 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1132.000000,3876.000000, 0.226038,0.773962, maf-5-some-pop,maf-5-all-pops 866 chr1 36923031 36923032 rs16823042 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1266.000000,3742.000000, 0.252796,0.747204, maf-5-some-pop,maf-5-all-pops 866 chr1 36924675 36924676 rs6425987 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3913.000000,1095.000000, 0.781350,0.218650, maf-5-some-pop 866 chr1 36929987 36929988 rs3806289 0 - T T A/G genomic single unknown 0 0 untranslated-5 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4301.000000,707.000000,707.000000,4301.000000, 0.429413,0.070587,0.070587,0.429413, maf-5-some-pop,maf-5-all-pops 866 chr1 36934666 36934667 rs2275472 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,RIKENSNPRC,SNP500CANCER,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4842.000000,166.000000,166.000000,4842.000000, 0.483427,0.016573,0.016573,0.483427, maf-5-some-pop 866 chr1 36935127 36935128 rs3917989 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PHARMGKB_PARC,PJP,RIKENSNPRC,SSMP,TISHKOFF, 4 A,C,G,T, 1270.000000,3738.000000,3738.000000,1270.000000, 0.126797,0.373203,0.373203,0.126797, maf-5-some-pop,maf-5-all-pops 866 chr1 36936600 36936601 rs3917984 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SSMP,TISHKOFF, 4 A,C,G,T, 3982.000000,1026.000000,1026.000000,3982.000000, 0.397564,0.102436,0.102436,0.397564, maf-5-some-pop 866 chr1 36937413 36937414 rs3917978 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,RIKENSNPRC,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 220.000000,4788.000000,4788.000000,220.000000, 0.021965,0.478035,0.478035,0.021965, maf-5-some-pop 866 chr1 36937495 36937496 rs3917977 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 130.000000,4878.000000,4878.000000,130.000000, 0.012979,0.487021,0.487021,0.012979, maf-5-some-pop,genotype-conflict 866 chr1 36937613 36937614 rs3917976 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,CLINSEQ_SNP,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 130.000000,4878.000000,4878.000000,130.000000, 0.012979,0.487021,0.487021,0.012979, maf-5-some-pop,genotype-conflict 866 chr1 36938601 36938602 rs3917972 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 4878.000000,130.000000,130.000000,4878.000000, 0.487021,0.012979,0.012979,0.487021, maf-5-some-pop,genotype-conflict 866 chr1 36938753 36938754 rs3917969 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 866 chr1 36941750 36941751 rs3917950 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PHARMGKB_PARC,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 4029.000000,979.000000,979.000000,4029.000000, 0.402256,0.097744,0.097744,0.402256, maf-5-some-pop 866 chr1 36944780 36944781 rs3917927 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 151.000000,4857.000000,4857.000000,151.000000, 0.015076,0.484924,0.484924,0.015076, maf-5-some-pop 866 chr1 36945558 36945559 rs3917925 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1808.000000,3200.000000,3200.000000,1808.000000, 0.180511,0.319489,0.319489,0.180511, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36945652 36945653 rs3917924 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PHARMGKB_PARC,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1470.000000,3538.000000,3538.000000,1470.000000, 0.146765,0.353235,0.353235,0.146765, maf-5-some-pop,microattr-tpa,genotype-conflict 866 chr1 36945712 36945713 rs3917922 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 215.000000,4793.000000,4793.000000,215.000000, 0.021466,0.478534,0.478534,0.021466, maf-5-some-pop 866 chr1 36957830 36957831 rs6667450 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2171.000000,2837.000000, 0.433506,0.566494, maf-5-some-pop,maf-5-all-pops,genotype-conflict 866 chr1 36960625 36960626 rs11263901 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop,maf-5-all-pops 867 chr1 36963877 36963878 rs4571935 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3042.000000,1966.000000, 0.607428,0.392572, maf-5-some-pop,maf-5-all-pops 867 chr1 36973609 36973610 rs12094900 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1511.000000,3497.000000, 0.301717,0.698283, maf-5-some-pop,maf-5-all-pops 867 chr1 36976252 36976253 rs4653193 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop 867 chr1 36977564 36977565 rs4233207 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 867 chr1 36980622 36980623 rs4078261 0 - A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 867 chr1 36981761 36981762 rs12068612 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop 867 chr1 36982637 36982638 rs16866068 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop 867 chr1 36988055 36988056 rs4481814 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 A,T, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop 867 chr1 36988137 36988138 rs7522482 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop 867 chr1 36989140 36989141 rs7530656 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1027.000000,3981.000000, 0.205072,0.794928, maf-5-some-pop 867 chr1 37000884 37000885 rs4233208 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 867 chr1 37001128 37001129 rs4351607 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop 867 chr1 37001211 37001212 rs16823161 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 867 chr1 37001231 37001232 rs4399121 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,T, 96.000000,4912.000000, 0.019169,0.980831, 867 chr1 37001922 37001923 rs10752589 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3686.000000,1322.000000, 0.736022,0.263978, maf-5-some-pop 867 chr1 37003049 37003050 rs6697796 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2060.000000,2948.000000, 0.411342,0.588658, maf-5-some-pop,maf-5-all-pops 867 chr1 37003272 37003273 rs17498436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1400.000000,3608.000000, 0.279553,0.720447, maf-5-some-pop,genotype-conflict 867 chr1 37018639 37018640 rs2180133 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,maf-5-all-pops,genotype-conflict 867 chr1 37018718 37018719 rs2144370 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop,maf-5-all-pops 867 chr1 37020421 37020422 rs12031548 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4672.000000,336.000000, 0.932907,0.067093, maf-5-some-pop 867 chr1 37021075 37021076 rs6425992 0 + G G A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3626.000000,1382.000000, 0.724042,0.275958, maf-5-some-pop 867 chr1 37027439 37027440 rs10489527 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 906.000000,4102.000000, 0.180911,0.819089, maf-5-some-pop 867 chr1 37033127 37033128 rs4026409 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3644.000000,1364.000000, 0.727636,0.272364, maf-5-some-pop,maf-5-all-pops 867 chr1 37035587 37035588 rs6698957 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop 867 chr1 37040734 37040735 rs4653196 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1921.000000,3087.000000, 0.383586,0.616414, maf-5-some-pop,maf-5-all-pops 867 chr1 37041068 37041069 rs4653197 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3678.000000,1330.000000, 0.734425,0.265575, maf-5-some-pop,genotype-conflict 867 chr1 37041356 37041357 rs12567252 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop,maf-5-all-pops 867 chr1 37046144 37046145 rs12758497 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop,maf-5-all-pops 867 chr1 37050526 37050527 rs10908307 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 867 chr1 37051419 37051420 rs750829 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4641.000000,367.000000,367.000000,4641.000000, 0.463359,0.036641,0.036641,0.463359, maf-5-some-pop 867 chr1 37054820 37054821 rs16823211 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 41.000000,4967.000000, 0.008187,0.991813, maf-5-some-pop 867 chr1 37058302 37058303 rs12564168 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 867 chr1 37058353 37058354 rs4653204 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2829.000000,2179.000000, 0.564896,0.435104, maf-5-some-pop,maf-5-all-pops 867 chr1 37060559 37060560 rs4653206 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2049.000000,2959.000000, 0.409145,0.590855, maf-5-some-pop,maf-5-all-pops 867 chr1 37064496 37064497 rs41322145 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 4 A,C,G,T, 300.000000,4708.000000,4708.000000,300.000000, 0.029952,0.470048,0.470048,0.029952, maf-5-some-pop 867 chr1 37065200 37065201 rs17484348 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,genotype-conflict 867 chr1 37066433 37066434 rs997322 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 495.000000,4513.000000,4513.000000,495.000000, 0.049421,0.450579,0.450579,0.049421, maf-5-some-pop 867 chr1 37070247 37070248 rs12063741 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3552.000000,1456.000000, 0.709265,0.290735, maf-5-some-pop,maf-5-all-pops 867 chr1 37070954 37070955 rs4652919 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1227.000000,3781.000000, 0.245008,0.754992, maf-5-some-pop 867 chr1 37075492 37075493 rs12072274 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop,genotype-conflict 867 chr1 37075962 37075963 rs11263921 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 683.000000,4325.000000, 0.136382,0.863618, maf-5-some-pop 867 chr1 37076091 37076092 rs11263922 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 686.000000,4322.000000, 0.136981,0.863019, maf-5-some-pop,maf-5-all-pops 867 chr1 37077334 37077335 rs12090136 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop 867 chr1 37077775 37077776 rs12090333 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop,genotype-conflict 867 chr1 37083208 37083209 rs16823268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4672.000000,336.000000, 0.932907,0.067093, maf-5-some-pop 867 chr1 37087089 37087090 rs7540086 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2889.000000,2119.000000, 0.576877,0.423123, maf-5-some-pop,maf-5-all-pops 867 chr1 37089449 37089450 rs12131598 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2674.000000,2334.000000, 0.533946,0.466054, maf-5-some-pop,maf-5-all-pops 867 chr1 37089922 37089923 rs7532617 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3016.000000,1992.000000, 0.602236,0.397764, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37110424 37110425 rs16823299 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4218.000000,790.000000, 0.842252,0.157748, maf-5-some-pop 868 chr1 37110657 37110658 rs12022858 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop 868 chr1 37111525 37111526 rs16823301 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 942.000000,4066.000000, 0.188099,0.811901, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37117447 37117448 rs12144657 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1913.000000,3095.000000, 0.381989,0.618011, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37117649 37117650 rs11263931 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3680.000000,1328.000000, 0.734824,0.265176, maf-5-some-pop 868 chr1 37118027 37118028 rs9661383 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3095.000000,1913.000000, 0.618011,0.381989, maf-5-some-pop,maf-5-all-pops 868 chr1 37126511 37126512 rs219002 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 2679.000000,2329.000000,2329.000000,2679.000000, 0.267472,0.232528,0.232528,0.267472, maf-5-some-pop,maf-5-all-pops 868 chr1 37126709 37126710 rs6685372 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 868 chr1 37129982 37129983 rs218999 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,genotype-conflict 868 chr1 37136422 37136423 rs1076773 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3556.000000,1452.000000, 0.710064,0.289936, maf-5-some-pop,maf-5-all-pops 868 chr1 37136669 37136670 rs743012 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1308.000000,3700.000000,3700.000000,1308.000000, 0.130591,0.369409,0.369409,0.130591, maf-5-some-pop,maf-5-all-pops 868 chr1 37136732 37136733 rs761716 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 2045.000000,2963.000000, 0.408347,0.591653, maf-5-some-pop,maf-5-all-pops 868 chr1 37137198 37137199 rs219012 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3186.000000,1822.000000,1822.000000,3186.000000, 0.318091,0.181909,0.181909,0.318091, maf-5-some-pop,maf-5-all-pops 868 chr1 37141173 37141174 rs7528341 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37144139 37144140 rs34305923 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop,maf-5-all-pops 868 chr1 37146465 37146466 rs219008 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3444.000000,1564.000000,1564.000000,3444.000000, 0.343850,0.156150,0.156150,0.343850, maf-5-some-pop,maf-5-all-pops 868 chr1 37147202 37147203 rs219007 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3489.000000,1519.000000,1519.000000,3489.000000, 0.348343,0.151657,0.151657,0.348343, maf-5-some-pop 868 chr1 37150460 37150461 rs11263936 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,G, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop,genotype-conflict 868 chr1 37150883 37150884 rs11263937 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3511.000000,1497.000000, 0.701078,0.298922, maf-5-some-pop,maf-5-all-pops 868 chr1 37152470 37152471 rs10430444 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop 868 chr1 37157944 37157945 rs2135592 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3924.000000,1084.000000,1084.000000,3924.000000, 0.391773,0.108227,0.108227,0.391773, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37158070 37158071 rs636521 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2221.000000,2787.000000,2787.000000,2221.000000, 0.221745,0.278255,0.278255,0.221745, maf-5-some-pop,maf-5-all-pops 868 chr1 37169664 37169665 rs218985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2146.000000,2862.000000, 0.428514,0.571486, maf-5-some-pop,genotype-conflict 868 chr1 37170744 37170745 rs218984 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3242.000000,1766.000000,1766.000000,3242.000000, 0.323682,0.176318,0.176318,0.323682, maf-5-some-pop,maf-5-all-pops 868 chr1 37171569 37171570 rs2983119 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop 868 chr1 37171765 37171766 rs12060668 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4046.000000,962.000000, 0.807907,0.192093, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37173643 37173644 rs7551137 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3444.000000,1564.000000, 0.687700,0.312300, maf-5-some-pop,maf-5-all-pops 868 chr1 37174772 37174773 rs4652921 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1569.000000,3439.000000, 0.313299,0.686701, maf-5-some-pop,maf-5-all-pops 868 chr1 37176008 37176009 rs7544015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop,maf-5-all-pops 868 chr1 37182395 37182396 rs7515535 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 957.000000,4051.000000, 0.191094,0.808906, maf-5-some-pop,maf-5-all-pops 868 chr1 37182485 37182486 rs11263940 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2719.000000,2289.000000, 0.542931,0.457069, maf-5-some-pop,maf-5-all-pops 868 chr1 37184881 37184882 rs7532521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 953.000000,4055.000000, 0.190296,0.809704, maf-5-some-pop,maf-5-all-pops 868 chr1 37187776 37187777 rs969839 0 - G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 868 chr1 37187963 37187964 rs969838 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 867.000000,4141.000000,4141.000000,867.000000, 0.086562,0.413438,0.413438,0.086562, maf-5-some-pop,maf-5-all-pops 868 chr1 37188132 37188133 rs969836 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4140.000000,868.000000,868.000000,4140.000000, 0.413339,0.086661,0.086661,0.413339, maf-5-some-pop,maf-5-all-pops 868 chr1 37188279 37188280 rs12410895 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 902.000000,4106.000000, 0.180112,0.819888, maf-5-some-pop,maf-5-all-pops 868 chr1 37189159 37189160 rs906228 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3241.000000,1767.000000,1767.000000,3241.000000, 0.323582,0.176418,0.176418,0.323582, maf-5-some-pop,maf-5-all-pops 868 chr1 37189531 37189532 rs12411263 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 902.000000,4106.000000, 0.180112,0.819888, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37192676 37192677 rs1002655 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 868 chr1 37192740 37192741 rs1002656 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 868 chr1 37193644 37193645 rs16823426 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop,maf-5-all-pops 868 chr1 37194309 37194310 rs11263942 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 879.000000,4129.000000, 0.175519,0.824481, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37197318 37197319 rs4653218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2108.000000,2900.000000, 0.420927,0.579073, maf-5-some-pop,maf-5-all-pops 868 chr1 37197451 37197452 rs4653219 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2457.000000,2551.000000, 0.490615,0.509385, maf-5-some-pop,maf-5-all-pops 868 chr1 37197719 37197720 rs6425998 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2447.000000,2561.000000, 0.488618,0.511382, maf-5-some-pop,maf-5-all-pops 868 chr1 37203701 37203702 rs507288 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2050.000000,2958.000000,2958.000000,2050.000000, 0.204673,0.295327,0.295327,0.204673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 868 chr1 37207132 37207133 rs7411698 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,T, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 868 chr1 37210111 37210112 rs494022 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1832.000000,3176.000000,3176.000000,1832.000000, 0.182907,0.317093,0.317093,0.182907, maf-5-some-pop,genotype-conflict 868 chr1 37220392 37220393 rs539335 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1969.000000,3039.000000, 0.393171,0.606829, maf-5-some-pop 868 chr1 37220720 37220721 rs1472823 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2512.000000,2496.000000,2496.000000,2512.000000, 0.250799,0.249201,0.249201,0.250799, maf-5-some-pop,maf-5-all-pops 868 chr1 37222761 37222762 rs2884710 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop,genotype-conflict 869 chr1 37233429 37233430 rs12083196 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2496.000000,2512.000000, 0.498403,0.501597, maf-5-some-pop,maf-5-all-pops 869 chr1 37239173 37239174 rs2986140 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 869 chr1 37239997 37239998 rs1890055 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 3 C,G,T, 4733.000000,271.000000,4.000000, 0.945088,0.054113,0.000799, maf-5-some-pop 869 chr1 37240037 37240038 rs479714 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1886.000000,3122.000000,3122.000000,1886.000000, 0.188299,0.311701,0.311701,0.188299, maf-5-some-pop 869 chr1 37240885 37240886 rs525798 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2680.000000,2328.000000,2328.000000,2680.000000, 0.267572,0.232428,0.232428,0.267572, maf-5-some-pop,maf-5-all-pops,genotype-conflict 869 chr1 37242742 37242743 rs490647 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2682.000000,2326.000000, 0.535543,0.464457, maf-5-some-pop,maf-5-all-pops,genotype-conflict 869 chr1 37250087 37250088 rs11801494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 869 chr1 37256062 37256063 rs479779 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1873.000000,3135.000000,3135.000000,1873.000000, 0.187001,0.312999,0.312999,0.187001, maf-5-some-pop 869 chr1 37256379 37256380 rs17447274 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 869 chr1 37261084 37261085 rs2993076 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1812.000000,3196.000000, 0.361821,0.638179, maf-5-some-pop 869 chr1 37278576 37278577 rs6671364 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 C,T, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,genotype-conflict 869 chr1 37284823 37284824 rs539591 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4117.000000,891.000000, 0.822085,0.177915, maf-5-some-pop,genotype-conflict 869 chr1 37285122 37285123 rs476227 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,C, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop 869 chr1 37287911 37287912 rs480058 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop 869 chr1 37287936 37287937 rs499230 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4056.000000,952.000000, 0.809904,0.190096, maf-5-some-pop 869 chr1 37293978 37293979 rs517347 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 134.000000,4874.000000,4874.000000,134.000000, 0.013379,0.486621,0.486621,0.013379, maf-5-some-pop 869 chr1 37294721 37294722 rs544932 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 788.000000,4220.000000,4220.000000,788.000000, 0.078674,0.421326,0.421326,0.078674, maf-5-some-pop,genotype-conflict 869 chr1 37302037 37302038 rs572688 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 4140.000000,868.000000,868.000000,4140.000000, 0.413339,0.086661,0.086661,0.413339, maf-5-some-pop,genotype-conflict 869 chr1 37302346 37302347 rs517969 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 841.000000,4167.000000,4167.000000,841.000000, 0.083966,0.416034,0.416034,0.083966, maf-5-some-pop 869 chr1 37303736 37303737 rs484017 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4066.000000,942.000000,942.000000,4066.000000, 0.405950,0.094050,0.094050,0.405950, maf-5-some-pop 869 chr1 37303955 37303956 rs571524 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4067.000000,941.000000,941.000000,4067.000000, 0.406050,0.093950,0.093950,0.406050, maf-5-some-pop,genotype-conflict 869 chr1 37304088 37304089 rs569858 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4013.000000,995.000000,995.000000,4013.000000, 0.400659,0.099341,0.099341,0.400659, maf-5-some-pop,genotype-conflict 869 chr1 37309996 37309997 rs527631 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 740.000000,4268.000000,4268.000000,740.000000, 0.073882,0.426118,0.426118,0.073882, maf-5-some-pop,genotype-conflict 869 chr1 37310668 37310669 rs3767045 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 G,T, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop 869 chr1 37315394 37315395 rs497848 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4924.000000,84.000000,84.000000,4924.000000, 0.491613,0.008387,0.008387,0.491613, maf-5-some-pop,maf-5-all-pops 869 chr1 37317441 37317442 rs547390 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 961.000000,4047.000000,4047.000000,961.000000, 0.095946,0.404054,0.404054,0.095946, maf-5-some-pop,genotype-conflict 869 chr1 37318532 37318533 rs516273 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 872.000000,4136.000000,4136.000000,872.000000, 0.087061,0.412939,0.412939,0.087061, maf-5-some-pop 869 chr1 37326082 37326083 rs4652931 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3724.000000,1284.000000, 0.743610,0.256390, maf-5-some-pop,maf-5-all-pops,genotype-conflict 869 chr1 37327303 37327304 rs543171 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 555.000000,4453.000000,4453.000000,555.000000, 0.055411,0.444589,0.444589,0.055411, maf-5-some-pop,maf-5-all-pops 869 chr1 37328139 37328140 rs3767049 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 1101.000000,3907.000000, 0.219848,0.780152, maf-5-some-pop 869 chr1 37329529 37329530 rs12133182 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 869 chr1 37329899 37329900 rs566420 0 - C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 869 chr1 37331907 37331908 rs506066 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 372.000000,4636.000000,4636.000000,372.000000, 0.037141,0.462859,0.462859,0.037141, maf-5-some-pop,genotype-conflict 869 chr1 37332936 37332937 rs553719 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop,genotype-conflict 869 chr1 37333859 37333860 rs561939 0 + C C A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop 869 chr1 37333962 37333963 rs565374 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop 869 chr1 37334282 37334283 rs476894 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,genotype-conflict 869 chr1 37335232 37335233 rs575247 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,genotype-conflict 869 chr1 37335550 37335551 rs3738085 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop,genotype-conflict 869 chr1 37337724 37337725 rs536787 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 301.000000,4707.000000,4707.000000,301.000000, 0.030052,0.469948,0.469948,0.030052, maf-5-some-pop 869 chr1 37340876 37340877 rs476377 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 413.000000,4595.000000,4595.000000,413.000000, 0.041234,0.458766,0.458766,0.041234, maf-5-some-pop 869 chr1 37342256 37342257 rs500468 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 275.000000,4733.000000,4733.000000,275.000000, 0.027456,0.472544,0.472544,0.027456, maf-5-some-pop,genotype-conflict 869 chr1 37348236 37348237 rs17461259 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 869 chr1 37349732 37349733 rs3820271 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 3812.000000,1196.000000, 0.761182,0.238818, maf-5-some-pop 869 chr1 37350804 37350805 rs480495 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4850.000000,158.000000, 0.968450,0.031550, maf-5-some-pop,genotype-conflict 869 chr1 37350820 37350821 rs480901 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 505.000000,4503.000000,4503.000000,505.000000, 0.050419,0.449581,0.449581,0.050419, maf-5-some-pop,maf-5-all-pops 869 chr1 37352488 37352489 rs3856134 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4691.000000,317.000000,317.000000,4691.000000, 0.468351,0.031649,0.031649,0.468351, maf-5-some-pop,genotype-conflict 869 chr1 37353609 37353610 rs523553 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 420.000000,4588.000000,4588.000000,420.000000, 0.041933,0.458067,0.458067,0.041933, maf-5-some-pop 870 chr1 37357584 37357585 rs1392743 0 - C C C/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 870 chr1 37364923 37364924 rs9426048 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 870 chr1 37368385 37368386 rs532873 0 - T T A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 421.000000,4587.000000,4587.000000,421.000000, 0.042033,0.457967,0.457967,0.042033, maf-5-some-pop 870 chr1 37370436 37370437 rs516863 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 456.000000,4552.000000,4552.000000,456.000000, 0.045527,0.454473,0.454473,0.045527, maf-5-some-pop,maf-5-all-pops 870 chr1 37370838 37370839 rs541671 0 - T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 870 chr1 37376912 37376913 rs3767066 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4052.000000,956.000000, 0.809105,0.190895, maf-5-some-pop,genotype-conflict 870 chr1 37380385 37380386 rs3767070 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,TISHKOFF,YUSUKE, 2 A,G, 4.000000,5004.000000, 0.000799,0.999201, 870 chr1 37384629 37384630 rs471710 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4585.000000,423.000000,423.000000,4585.000000, 0.457768,0.042232,0.042232,0.457768, maf-5-some-pop 870 chr1 37390560 37390561 rs1032722 0 - T T A/G genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 938.000000,4070.000000,4070.000000,938.000000, 0.093650,0.406350,0.406350,0.093650, maf-5-some-pop 870 chr1 37392818 37392819 rs2173809 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 35.000000,4973.000000,4973.000000,35.000000, 0.003494,0.496506,0.496506,0.003494, maf-5-some-pop 870 chr1 37392841 37392842 rs1875293 0 - A A A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, genotype-conflict 870 chr1 37392865 37392866 rs1875292 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 35.000000,4973.000000,4973.000000,35.000000, 0.003494,0.496506,0.496506,0.003494, maf-5-some-pop 870 chr1 37396338 37396339 rs1334802 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 4 A,C,G,T, 4550.000000,458.000000,458.000000,4550.000000, 0.454273,0.045727,0.045727,0.454273, maf-5-some-pop,genotype-conflict 870 chr1 37398038 37398039 rs7531813 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop,maf-5-all-pops 870 chr1 37398176 37398177 rs41344852 0 - G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 870 chr1 37398260 37398261 rs7555221 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop,genotype-conflict 870 chr1 37398435 37398436 rs4653233 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop,genotype-conflict 870 chr1 37399973 37399974 rs1334799 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 454.000000,4554.000000,4554.000000,454.000000, 0.045327,0.454673,0.454673,0.045327, maf-5-some-pop,genotype-conflict 870 chr1 37402000 37402001 rs7517274 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4055.000000,953.000000, 0.809704,0.190296, maf-5-some-pop 870 chr1 37402539 37402540 rs527442 0 - T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 870 chr1 37403013 37403014 rs481047 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 759.000000,4249.000000,4249.000000,759.000000, 0.075779,0.424221,0.424221,0.075779, maf-5-some-pop,genotype-conflict 870 chr1 37403411 37403412 rs1160752 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1836.000000,3172.000000,3172.000000,1836.000000, 0.183307,0.316693,0.316693,0.183307, maf-5-some-pop,maf-5-all-pops,genotype-conflict 870 chr1 37405915 37405916 rs522309 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 409.000000,4599.000000,4599.000000,409.000000, 0.040835,0.459165,0.459165,0.040835, maf-5-some-pop,genotype-conflict 870 chr1 37406611 37406612 rs16823680 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 870 chr1 37408080 37408081 rs16823687 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 874.000000,4134.000000, 0.174521,0.825479, maf-5-some-pop,genotype-conflict 870 chr1 37413673 37413674 rs532032 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 108.000000,4900.000000,4900.000000,108.000000, 0.010783,0.489217,0.489217,0.010783, maf-5-some-pop 870 chr1 37414804 37414805 rs16823702 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop,genotype-conflict 870 chr1 37414968 37414969 rs16823705 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,C, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 870 chr1 37415546 37415547 rs500133 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 253.000000,4755.000000,4755.000000,253.000000, 0.025260,0.474740,0.474740,0.025260, maf-5-some-pop,genotype-conflict 870 chr1 37415672 37415673 rs12736276 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop 870 chr1 37418980 37418981 rs564804 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4821.000000,187.000000,187.000000,4821.000000, 0.481330,0.018670,0.018670,0.481330, maf-5-some-pop 870 chr1 37419840 37419841 rs535620 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1298.000000,3710.000000, 0.259185,0.740815, maf-5-some-pop,maf-5-all-pops,genotype-conflict 870 chr1 37421332 37421333 rs3753770 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop 870 chr1 37421957 37421958 rs501832 0 - C C C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 870 chr1 37430362 37430363 rs6687320 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4553.000000,455.000000, 0.909145,0.090855, maf-5-some-pop,genotype-conflict 870 chr1 37431341 37431342 rs540833 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP, 4 A,C,G,T, 176.000000,4832.000000,4832.000000,176.000000, 0.017572,0.482428,0.482428,0.017572, maf-5-some-pop,maf-5-all-pops 870 chr1 37431381 37431382 rs3894723 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 770.000000,4238.000000,4238.000000,770.000000, 0.076877,0.423123,0.423123,0.076877, maf-5-some-pop 870 chr1 37432179 37432180 rs6656317 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 740.000000,4268.000000, 0.147764,0.852236, maf-5-some-pop 870 chr1 37437938 37437939 rs3767098 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,genotype-conflict 870 chr1 37438379 37438380 rs11263955 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3053.000000,1955.000000, 0.609625,0.390375, maf-5-some-pop 870 chr1 37438569 37438570 rs35317705 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1953.000000,3055.000000, 0.389976,0.610024, maf-5-some-pop 870 chr1 37443952 37443953 rs3767101 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop 870 chr1 37444441 37444442 rs11799904 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop 870 chr1 37445739 37445740 rs11263956 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop,genotype-conflict 870 chr1 37446798 37446799 rs12130438 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop 870 chr1 37447747 37447748 rs539308 0 - A A A/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 870 chr1 37449594 37449595 rs3913434 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,GMI,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 45.000000,4963.000000,4963.000000,45.000000, 0.004493,0.495507,0.495507,0.004493, maf-5-some-pop 870 chr1 37450242 37450243 rs7513770 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 870 chr1 37454783 37454784 rs12070070 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 870 chr1 37456219 37456220 rs16823744 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop 870 chr1 37469192 37469193 rs12070519 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop 870 chr1 37471616 37471617 rs516139 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 870 chr1 37477379 37477380 rs532719 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1896.000000,3112.000000, 0.378594,0.621406, maf-5-some-pop 870 chr1 37478062 37478063 rs12138633 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop,genotype-conflict 870 chr1 37478277 37478278 rs528578 0 - T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 870 chr1 37484051 37484052 rs535876 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 870 chr1 37485787 37485788 rs822854 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2410.000000,2598.000000,2598.000000,2410.000000, 0.240615,0.259385,0.259385,0.240615, maf-5-some-pop,maf-5-all-pops 871 chr1 37488336 37488337 rs522481 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2719.000000,2289.000000,2289.000000,2719.000000, 0.271466,0.228534,0.228534,0.271466, maf-5-some-pop,maf-5-all-pops 871 chr1 37489220 37489221 rs493243 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3988.000000,1020.000000,1020.000000,3988.000000, 0.398163,0.101837,0.101837,0.398163, maf-5-some-pop 871 chr1 37489379 37489380 rs6686296 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1657.000000,3351.000000, 0.330871,0.669129, maf-5-some-pop,maf-5-all-pops 871 chr1 37493205 37493206 rs507460 0 - G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 871 chr1 37504669 37504670 rs694219 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4062.000000,946.000000,946.000000,4062.000000, 0.405551,0.094449,0.094449,0.405551, maf-5-some-pop 871 chr1 37512994 37512995 rs494157 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2138.000000,2870.000000,2870.000000,2138.000000, 0.213458,0.286542,0.286542,0.213458, maf-5-some-pop,maf-5-all-pops 871 chr1 37513756 37513757 rs12031540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3078.000000,1930.000000, 0.614617,0.385383, maf-5-some-pop,maf-5-all-pops 871 chr1 37513905 37513906 rs10489413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3189.000000,1819.000000, 0.636781,0.363219, maf-5-some-pop,maf-5-all-pops 871 chr1 37525002 37525003 rs10489414 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 871 chr1 37525675 37525676 rs613720 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3308.000000,1700.000000,1700.000000,3308.000000, 0.330272,0.169728,0.169728,0.330272, maf-5-some-pop,maf-5-all-pops,genotype-conflict 871 chr1 37525721 37525722 rs41373247 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop,maf-5-all-pops 871 chr1 37526480 37526481 rs521696 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1045.000000,3963.000000,3963.000000,1045.000000, 0.104333,0.395667,0.395667,0.104333, maf-5-some-pop 871 chr1 37528845 37528846 rs41534849 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 4 A,C,G,T, 76.000000,4932.000000,4932.000000,76.000000, 0.007588,0.492412,0.492412,0.007588, maf-5-some-pop 871 chr1 37534051 37534052 rs849943 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3617.000000,1391.000000,1391.000000,3617.000000, 0.361122,0.138878,0.138878,0.361122, maf-5-some-pop,maf-5-all-pops 871 chr1 37534254 37534255 rs6702349 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1807.000000,3201.000000, 0.360823,0.639177, maf-5-some-pop 871 chr1 37536067 37536068 rs12077898 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1993.000000,3015.000000, 0.397963,0.602037, maf-5-some-pop 871 chr1 37536133 37536134 rs709297 0 - A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 871 chr1 37539970 37539971 rs12031196 0 + A A A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 3 A,C,T, 4333.000000,622.000000,53.000000, 0.865216,0.124201,0.010583, maf-5-some-pop 871 chr1 37540175 37540176 rs218417 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1103.000000,3905.000000,3905.000000,1103.000000, 0.110124,0.389876,0.389876,0.110124, maf-5-some-pop,genotype-conflict 871 chr1 37544222 37544223 rs218428 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1205.000000,3803.000000,3803.000000,1205.000000, 0.120308,0.379692,0.379692,0.120308, maf-5-some-pop,microattr-tpa,genotype-conflict 871 chr1 37548472 37548473 rs218396 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3851.000000,1157.000000,1157.000000,3851.000000, 0.384485,0.115515,0.115515,0.384485, maf-5-some-pop,genotype-conflict 871 chr1 37549182 37549183 rs2655599 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 398.000000,4610.000000,4610.000000,398.000000, 0.039736,0.460264,0.460264,0.039736, maf-5-some-pop,genotype-conflict 871 chr1 37549638 37549639 rs218394 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3251.000000,1757.000000,1757.000000,3251.000000, 0.324581,0.175419,0.175419,0.324581, maf-5-some-pop,maf-5-all-pops,genotype-conflict 871 chr1 37552611 37552612 rs542405 0 - T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 871 chr1 37561673 37561674 rs218374 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 871 chr1 37563637 37563638 rs12045073 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop 871 chr1 37566810 37566811 rs12069350 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop 871 chr1 37567438 37567439 rs3856135 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 663.000000,4345.000000,4345.000000,663.000000, 0.066194,0.433806,0.433806,0.066194, maf-5-some-pop 871 chr1 37569970 37569971 rs11579328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3670.000000,1338.000000, 0.732827,0.267173, maf-5-some-pop 871 chr1 37572629 37572630 rs11263975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1327.000000,3681.000000, 0.264976,0.735024, maf-5-some-pop 871 chr1 37572826 37572827 rs11263977 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop 871 chr1 37574863 37574864 rs760964 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 143.000000,4865.000000,4865.000000,143.000000, 0.014277,0.485723,0.485723,0.014277, maf-5-some-pop 871 chr1 37575596 37575597 rs12118673 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1406.000000,3602.000000, 0.280751,0.719249, maf-5-some-pop 871 chr1 37576527 37576528 rs849962 0 - C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 871 chr1 37577213 37577214 rs849961 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2115.000000,2893.000000,2893.000000,2115.000000, 0.211162,0.288838,0.288838,0.211162, maf-5-some-pop,maf-5-all-pops 871 chr1 37577469 37577470 rs568540 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3059.000000,1949.000000,1949.000000,3059.000000, 0.305411,0.194589,0.194589,0.305411, maf-5-some-pop,maf-5-all-pops 871 chr1 37577712 37577713 rs16823810 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 871 chr1 37579226 37579227 rs12145370 0 + A A A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF, 3 A,G,T, 2939.000000,2001.000000,68.000000, 0.586861,0.399561,0.013578, maf-5-some-pop 871 chr1 37580158 37580159 rs2793178 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,G, 290.000000,4718.000000, 0.057907,0.942093, maf-5-some-pop 871 chr1 37580701 37580702 rs215759 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3553.000000,1455.000000, 0.709465,0.290535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 871 chr1 37584325 37584326 rs215765 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4228.000000,780.000000, 0.844249,0.155751, maf-5-some-pop 871 chr1 37585972 37585973 rs215770 0 + A A A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 966.000000,4042.000000, 0.192891,0.807109, maf-5-some-pop 871 chr1 37596239 37596240 rs215773 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 825.000000,4183.000000,4183.000000,825.000000, 0.082368,0.417632,0.417632,0.082368, maf-5-some-pop 871 chr1 37596442 37596443 rs215772 0 - T T A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 871 chr1 37596759 37596760 rs4653247 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 747.000000,4261.000000, 0.149161,0.850839, maf-5-some-pop,genotype-conflict 871 chr1 37600441 37600442 rs215797 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1408.000000,3600.000000,3600.000000,1408.000000, 0.140575,0.359425,0.359425,0.140575, maf-5-some-pop,maf-5-all-pops 871 chr1 37605440 37605441 rs215792 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3442.000000,1566.000000,1566.000000,3442.000000, 0.343650,0.156350,0.156350,0.343650, maf-5-some-pop,maf-5-all-pops 871 chr1 37606290 37606291 rs215791 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3444.000000,1564.000000,1564.000000,3444.000000, 0.343850,0.156150,0.156150,0.343850, maf-5-some-pop,maf-5-all-pops 871 chr1 37609319 37609320 rs16823842 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop 871 chr1 37611512 37611513 rs12131641 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,genotype-conflict 871 chr1 37612619 37612620 rs41387646 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 4 A,C,G,T, 4830.000000,178.000000,178.000000,4830.000000, 0.482228,0.017772,0.017772,0.482228, maf-5-some-pop 872 chr1 37621197 37621198 rs12565849 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 A,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 872 chr1 37621303 37621304 rs4652937 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,maf-5-all-pops 872 chr1 37622069 37622070 rs4653252 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2589.000000,2419.000000, 0.516973,0.483027, maf-5-some-pop,maf-5-all-pops 872 chr1 37625762 37625763 rs12118788 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 872 chr1 37626980 37626981 rs215756 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1270.000000,3738.000000,3738.000000,1270.000000, 0.126797,0.373203,0.373203,0.126797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 872 chr1 37628740 37628741 rs1587578 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3883.000000,1125.000000,1125.000000,3883.000000, 0.387680,0.112320,0.112320,0.387680, maf-5-some-pop 872 chr1 37635503 37635504 rs10489416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 872 chr1 37636116 37636117 rs998176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2448.000000,2560.000000, 0.488818,0.511182, maf-5-some-pop,maf-5-all-pops,genotype-conflict 872 chr1 37638668 37638669 rs11810891 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 872 chr1 37643016 37643017 rs218381 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4589.000000,419.000000,419.000000,4589.000000, 0.458167,0.041833,0.041833,0.458167, maf-5-some-pop 872 chr1 37643317 37643318 rs218379 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 417.000000,4591.000000,4591.000000,417.000000, 0.041633,0.458367,0.458367,0.041633, maf-5-some-pop,genotype-conflict 872 chr1 37644736 37644737 rs4653254 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops,genotype-conflict 872 chr1 37644998 37644999 rs218378 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4325.000000,683.000000,683.000000,4325.000000, 0.431809,0.068191,0.068191,0.431809, maf-5-some-pop 872 chr1 37646739 37646740 rs218427 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 418.000000,4590.000000,4590.000000,418.000000, 0.041733,0.458267,0.458267,0.041733, maf-5-some-pop 872 chr1 37648087 37648088 rs150573 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1709.000000,3299.000000,3299.000000,1709.000000, 0.170627,0.329373,0.329373,0.170627, maf-5-some-pop,maf-5-all-pops 872 chr1 37652347 37652348 rs7532271 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop 872 chr1 37661909 37661910 rs215821 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4170.000000,838.000000,838.000000,4170.000000, 0.416334,0.083666,0.083666,0.416334, maf-5-some-pop,maf-5-all-pops,genotype-conflict 872 chr1 37663142 37663143 rs215820 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1160.000000,3848.000000,3848.000000,1160.000000, 0.115815,0.384185,0.384185,0.115815, maf-5-some-pop,maf-5-all-pops 872 chr1 37663171 37663172 rs12743241 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 747.000000,4261.000000, 0.149161,0.850839, maf-5-some-pop,maf-5-all-pops,genotype-conflict 872 chr1 37667515 37667516 rs215814 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3970.000000,1038.000000,1038.000000,3970.000000, 0.396366,0.103634,0.103634,0.396366, maf-5-some-pop,maf-5-all-pops,genotype-conflict 872 chr1 37679875 37679876 rs17508197 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,C, 417.000000,4591.000000, 0.083267,0.916733, maf-5-some-pop,genotype-conflict 872 chr1 37687417 37687418 rs1501534 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL, 2 A,G, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop,genotype-conflict 872 chr1 37690797 37690798 rs17508351 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 872 chr1 37691417 37691418 rs6690892 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 427.000000,4581.000000, 0.085264,0.914736, maf-5-some-pop 872 chr1 37691448 37691449 rs6426013 0 + T T G/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4422.000000,586.000000, 0.882987,0.117013, maf-5-some-pop 872 chr1 37692017 37692018 rs17462022 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 872 chr1 37693987 37693988 rs6700777 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4506.000000,502.000000, 0.899760,0.100240, maf-5-some-pop 872 chr1 37694611 37694612 rs4653263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop 872 chr1 37699183 37699184 rs16823888 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 613.000000,4395.000000, 0.122404,0.877596, maf-5-some-pop 872 chr1 37703331 37703332 rs11264003 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1231.000000,3777.000000, 0.245807,0.754193, maf-5-some-pop 872 chr1 37707455 37707456 rs6679108 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop 872 chr1 37707904 37707905 rs998946 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4045.000000,963.000000,963.000000,4045.000000, 0.403854,0.096146,0.096146,0.403854, maf-5-some-pop 872 chr1 37710589 37710590 rs16823912 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3863.000000,1145.000000, 0.771366,0.228634, maf-5-some-pop,maf-5-all-pops 872 chr1 37715507 37715508 rs905113 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2915.000000,2093.000000, 0.582069,0.417931, maf-5-some-pop,maf-5-all-pops 872 chr1 37715649 37715650 rs41384450 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 872 chr1 37719408 37719409 rs10908327 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2863.000000,2145.000000, 0.571685,0.428315, maf-5-some-pop,maf-5-all-pops 872 chr1 37722911 37722912 rs1501541 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 872 chr1 37723077 37723078 rs1501540 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1496.000000,3512.000000,3512.000000,1496.000000, 0.149361,0.350639,0.350639,0.149361, maf-5-some-pop 872 chr1 37724161 37724162 rs10908329 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2065.000000,2943.000000, 0.412340,0.587660, maf-5-some-pop,maf-5-all-pops 872 chr1 37724363 37724364 rs905108 0 - A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 872 chr1 37724947 37724948 rs302001 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 493.000000,4515.000000,4515.000000,493.000000, 0.049221,0.450779,0.450779,0.049221, maf-5-some-pop 872 chr1 37725973 37725974 rs16823935 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 872 chr1 37726251 37726252 rs7541661 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1469.000000,3539.000000, 0.293331,0.706669, maf-5-some-pop 872 chr1 37727414 37727415 rs11264007 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop 872 chr1 37730549 37730550 rs12037190 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1990.000000,3018.000000, 0.397364,0.602636, maf-5-some-pop,maf-5-all-pops 872 chr1 37733928 37733929 rs591145 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4428.000000,580.000000, 0.884185,0.115815, maf-5-some-pop 873 chr1 37750086 37750087 rs301997 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4207.000000,801.000000, 0.840056,0.159944, maf-5-some-pop 873 chr1 37750099 37750100 rs301996 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop 873 chr1 37752972 37752973 rs301991 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4219.000000,789.000000, 0.842452,0.157548, maf-5-some-pop 873 chr1 37753526 37753527 rs10796900 0 + C C A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 3 A,C,T, 2929.000000,2010.000000,69.000000, 0.584864,0.401358,0.013778, maf-5-some-pop,maf-5-all-pops 873 chr1 37753739 37753740 rs10796901 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 873 chr1 37754546 37754547 rs640542 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4142.000000,866.000000, 0.827077,0.172923, maf-5-some-pop 873 chr1 37762538 37762539 rs301989 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4354.000000,654.000000, 0.869409,0.130591, maf-5-some-pop,maf-5-all-pops 873 chr1 37764585 37764586 rs1888698 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3769.000000,1239.000000,1239.000000,3769.000000, 0.376298,0.123702,0.123702,0.376298, maf-5-some-pop,maf-5-all-pops,genotype-conflict 873 chr1 37765919 37765920 rs10908337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2746.000000,2262.000000, 0.548323,0.451677, maf-5-some-pop,maf-5-all-pops 873 chr1 37766259 37766260 rs10908338 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop,genotype-conflict 873 chr1 37767013 37767014 rs10752592 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1330.000000,3678.000000, 0.265575,0.734425, maf-5-some-pop,maf-5-all-pops 873 chr1 37770622 37770623 rs6426015 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop,genotype-conflict 873 chr1 37772591 37772592 rs4653273 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1376.000000,3632.000000, 0.274760,0.725240, maf-5-some-pop 873 chr1 37772767 37772768 rs16823961 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 873 chr1 37773049 37773050 rs7516603 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3929.000000,1079.000000, 0.784545,0.215455, maf-5-some-pop 873 chr1 37773585 37773586 rs6426016 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3578.000000,1430.000000, 0.714457,0.285543, maf-5-some-pop,maf-5-all-pops 873 chr1 37773862 37773863 rs7519654 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4741.000000,267.000000, 0.946685,0.053315, maf-5-some-pop 873 chr1 37774696 37774697 rs3898790 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1436.000000,3572.000000,3572.000000,1436.000000, 0.143371,0.356629,0.356629,0.143371, maf-5-some-pop,maf-5-all-pops,genotype-conflict 873 chr1 37777758 37777759 rs11264024 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,maf-5-all-pops 873 chr1 37780361 37780362 rs11264025 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop 873 chr1 37780921 37780922 rs10796905 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3005.000000,2003.000000, 0.600040,0.399960, maf-5-some-pop,maf-5-all-pops 873 chr1 37781053 37781054 rs6673253 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop,genotype-conflict 873 chr1 37782840 37782841 rs963295 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 873 chr1 37782873 37782874 rs1411931 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1545.000000,3463.000000,3463.000000,1545.000000, 0.154253,0.345747,0.345747,0.154253, maf-5-some-pop,microattr-tpa 873 chr1 37782901 37782902 rs949586 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2272.000000,2736.000000, 0.453674,0.546326, maf-5-some-pop,genotype-conflict 873 chr1 37787732 37787733 rs761158 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 463.000000,4545.000000,4545.000000,463.000000, 0.046226,0.453774,0.453774,0.046226, maf-5-some-pop 873 chr1 37788698 37788699 rs16823978 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop 873 chr1 37789410 37789411 rs7522706 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4511.000000,497.000000, 0.900759,0.099241, maf-5-some-pop 873 chr1 37791497 37791498 rs6692311 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 873 chr1 37794344 37794345 rs6659871 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1745.000000,3263.000000, 0.348442,0.651558, maf-5-some-pop,maf-5-all-pops,genotype-conflict 873 chr1 37795039 37795040 rs16823981 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,genotype-conflict 873 chr1 37797382 37797383 rs16823983 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 873 chr1 37799890 37799891 rs35850283 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4502.000000,506.000000, 0.898962,0.101038, maf-5-some-pop 873 chr1 37806512 37806513 rs1022554 0 - T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 873 chr1 37807856 37807857 rs4653279 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop,maf-5-all-pops 873 chr1 37808472 37808473 rs12029096 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4037.000000,971.000000, 0.806110,0.193890, maf-5-some-pop 873 chr1 37808593 37808594 rs12744128 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2841.000000,2167.000000, 0.567292,0.432708, maf-5-some-pop,maf-5-all-pops 873 chr1 37808908 37808909 rs11264029 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,G, 364.000000,4644.000000, 0.072684,0.927316, maf-5-some-pop 873 chr1 37811705 37811706 rs41380945 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 873 chr1 37818204 37818205 rs4653280 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop 873 chr1 37848792 37848793 rs2050163 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3089.000000,1919.000000,1919.000000,3089.000000, 0.308407,0.191593,0.191593,0.308407, maf-5-some-pop,maf-5-all-pops 873 chr1 37853333 37853334 rs1569661 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3261.000000,1747.000000,1747.000000,3261.000000, 0.325579,0.174421,0.174421,0.325579, maf-5-some-pop,maf-5-all-pops 873 chr1 37853751 37853752 rs41355945 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 873 chr1 37855833 37855834 rs16824043 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 474.000000,4534.000000, 0.094649,0.905351, maf-5-some-pop 873 chr1 37855870 37855871 rs2811608 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1254.000000,3754.000000, 0.250399,0.749601, maf-5-some-pop,maf-5-all-pops,genotype-conflict 873 chr1 37855959 37855960 rs11264034 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3871.000000,1137.000000, 0.772963,0.227037, maf-5-some-pop,maf-5-all-pops,genotype-conflict 873 chr1 37859875 37859876 rs2745487 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 583.000000,4425.000000,4425.000000,583.000000, 0.058207,0.441793,0.441793,0.058207, maf-5-some-pop,genotype-conflict 873 chr1 37861045 37861046 rs2745486 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 3350.000000,1658.000000,1658.000000,3350.000000, 0.334465,0.165535,0.165535,0.334465, maf-5-some-pop,maf-5-all-pops 873 chr1 37861303 37861304 rs2811615 0 + G G C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 2992.000000,2016.000000, 0.597444,0.402556, maf-5-some-pop,maf-5-all-pops 873 chr1 37865130 37865131 rs876466 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 873 chr1 37870082 37870083 rs2745477 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1284.000000,3724.000000,3724.000000,1284.000000, 0.128195,0.371805,0.371805,0.128195, maf-5-some-pop 873 chr1 37871984 37871985 rs2811620 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1506.000000,3502.000000, 0.300719,0.699281, maf-5-some-pop 874 chr1 37880708 37880709 rs12093233 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3824.000000,1184.000000, 0.763578,0.236422, maf-5-some-pop,genotype-conflict 874 chr1 37881542 37881543 rs11264041 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1184.000000,3824.000000, 0.236422,0.763578, maf-5-some-pop 874 chr1 37882113 37882114 rs2811630 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1351.000000,3657.000000, 0.269768,0.730232, maf-5-some-pop,maf-5-all-pops 874 chr1 37882337 37882338 rs12136738 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 829.000000,4179.000000, 0.165535,0.834465, maf-5-some-pop 874 chr1 37884024 37884025 rs2745491 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2476.000000,2532.000000,2532.000000,2476.000000, 0.247204,0.252796,0.252796,0.247204, maf-5-some-pop,maf-5-all-pops 874 chr1 37884290 37884291 rs7522526 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 874 chr1 37890950 37890951 rs16824128 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop 874 chr1 37891044 37891045 rs12139812 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 538.000000,4470.000000, 0.107428,0.892572, maf-5-some-pop 874 chr1 37892153 37892154 rs12734239 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2428.000000,2580.000000, 0.484824,0.515176, maf-5-some-pop 874 chr1 37892549 37892550 rs4653291 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop 874 chr1 37892623 37892624 rs11264045 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1248.000000,3760.000000, 0.249201,0.750799, maf-5-some-pop,genotype-conflict 874 chr1 37898912 37898913 rs6682467 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4309.000000,699.000000, 0.860423,0.139577, maf-5-some-pop 874 chr1 37900172 37900173 rs10796907 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1557.000000,3451.000000, 0.310903,0.689097, maf-5-some-pop,maf-5-all-pops,microattr-tpa 874 chr1 37900414 37900415 rs11264047 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4167.000000,841.000000, 0.832069,0.167931, maf-5-some-pop,genotype-conflict 874 chr1 37902134 37902135 rs11264049 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops 874 chr1 37902330 37902331 rs10908350 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2008.000000,3000.000000, 0.400958,0.599042, maf-5-some-pop,maf-5-all-pops 874 chr1 37920682 37920683 rs2282256 0 - G G C/G genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 874 chr1 37930244 37930245 rs2660563 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,genotype-conflict 874 chr1 37930293 37930294 rs2811642 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1735.000000,3273.000000, 0.346446,0.653554, maf-5-some-pop,genotype-conflict 874 chr1 37933245 37933246 rs41505045 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,AFFY,AFFY_GWHS, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 874 chr1 37941952 37941953 rs1395718 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop 874 chr1 37946854 37946855 rs11589893 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop,genotype-conflict 874 chr1 37952975 37952976 rs215208 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop,genotype-conflict 874 chr1 37955865 37955866 rs41439344 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 874 chr1 37961612 37961613 rs2294873 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4348.000000,660.000000, 0.868211,0.131789, maf-5-some-pop,genotype-conflict 874 chr1 37971211 37971212 rs4653295 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2872.000000,2136.000000, 0.573482,0.426518, maf-5-some-pop,maf-5-all-pops 874 chr1 38006358 38006359 rs2174769 0 + A A A/G genomic single unknown 0 0 intron exact 1 31 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 1392.000000,3616.000000, 0.277955,0.722045, maf-5-some-pop 875 chr1 38018133 38018134 rs12144401 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop 875 chr1 38024053 38024054 rs4653300 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops 875 chr1 38030695 38030696 rs6619 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2058.000000,2950.000000, 0.410942,0.589058, maf-5-some-pop,maf-5-all-pops 875 chr1 38031104 38031105 rs11586480 0 + T T A/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP, 2 A,T, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop 875 chr1 38031971 38031972 rs3856137 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,CGAP-GAI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 305.000000,4703.000000, 0.060903,0.939097, maf-5-some-pop 875 chr1 38035285 38035286 rs10908355 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2435.000000,2573.000000, 0.486222,0.513778, maf-5-some-pop 875 chr1 38043236 38043237 rs10908357 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop 875 chr1 38049551 38049552 rs6426024 0 + C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1348.000000,3660.000000, 0.269169,0.730831, maf-5-some-pop 875 chr1 38051584 38051585 rs7535432 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1024.000000,3984.000000, 0.204473,0.795527, maf-5-some-pop 875 chr1 38066588 38066589 rs6426025 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 980.000000,4028.000000, 0.195687,0.804313, maf-5-some-pop 875 chr1 38070731 38070732 rs12404717 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop 875 chr1 38083940 38083941 rs11264075 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2649.000000,2359.000000, 0.528954,0.471046, maf-5-some-pop,maf-5-all-pops 875 chr1 38086577 38086578 rs12023270 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4042.000000,966.000000, 0.807109,0.192891, maf-5-some-pop 875 chr1 38097133 38097134 rs11590920 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop 875 chr1 38107225 38107226 rs6426027 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3819.000000,1189.000000, 0.762580,0.237420, maf-5-some-pop 875 chr1 38109156 38109157 rs4653311 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 905.000000,4103.000000, 0.180711,0.819289, maf-5-some-pop,maf-5-all-pops 875 chr1 38109659 38109660 rs7521055 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3883.000000,1125.000000, 0.775359,0.224641, maf-5-some-pop 875 chr1 38109751 38109752 rs7552071 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2467.000000,2541.000000, 0.492612,0.507388, maf-5-some-pop,maf-5-all-pops 875 chr1 38115671 38115672 rs11590990 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop 875 chr1 38117141 38117142 rs11264081 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops,genotype-conflict 875 chr1 38123844 38123845 rs17463411 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop 875 chr1 38127153 38127154 rs6687329 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1933.000000,3075.000000, 0.385982,0.614018, maf-5-some-pop,maf-5-all-pops,genotype-conflict 875 chr1 38139550 38139551 rs11585866 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF, 2 A,C, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop 876 chr1 38147165 38147166 rs510208 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop,genotype-conflict 876 chr1 38148764 38148765 rs684260 0 + A A A/C/G/T genomic single unknown 0 0 missense,untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop,genotype-conflict 876 chr1 38154872 38154873 rs507667 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2102.000000,2906.000000, 0.419728,0.580272, maf-5-some-pop,maf-5-all-pops 876 chr1 38156901 38156902 rs3762352 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop 876 chr1 38162706 38162707 rs768659 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2939.000000,2069.000000,2069.000000,2939.000000, 0.293431,0.206569,0.206569,0.293431, maf-5-some-pop,maf-5-all-pops,genotype-conflict 876 chr1 38162759 38162760 rs497705 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 876 chr1 38163338 38163339 rs10908369 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop,maf-5-all-pops 876 chr1 38163386 38163387 rs11264087 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, maf-5-some-pop 876 chr1 38166326 38166327 rs661460 0 - A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 876 chr1 38168803 38168804 rs12119598 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 876 chr1 38169045 38169046 rs12139097 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SI_EXO, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 876 chr1 38169577 38169578 rs3790623 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1127.000000,3881.000000, 0.225040,0.774960, maf-5-some-pop,maf-5-all-pops 876 chr1 38169997 38169998 rs589927 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops 876 chr1 38174184 38174185 rs557897 0 + G G A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,PJP,SC_JCM,SEQUENOM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2129.000000,2879.000000, 0.425120,0.574880, maf-5-some-pop 876 chr1 38175334 38175335 rs1047958 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop 876 chr1 38177481 38177482 rs11264091 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 876 chr1 38180284 38180285 rs658024 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2069.000000,2939.000000, 0.413139,0.586861, maf-5-some-pop,maf-5-all-pops,genotype-conflict 876 chr1 38188840 38188841 rs12121777 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BL,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 621.000000,4387.000000, 0.124002,0.875998, maf-5-some-pop,maf-5-all-pops,genotype-conflict 876 chr1 38189141 38189142 rs1010805 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4280.000000,728.000000,728.000000,4280.000000, 0.427316,0.072684,0.072684,0.427316, maf-5-some-pop,maf-5-all-pops 876 chr1 38189206 38189207 rs11582917 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 876 chr1 38192336 38192337 rs6686264 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3952.000000,1056.000000, 0.789137,0.210863, maf-5-some-pop 876 chr1 38192536 38192537 rs17464981 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,microattr-tpa 876 chr1 38196840 38196841 rs731174 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1024.000000,3984.000000, 0.204473,0.795527, maf-5-some-pop,microattr-tpa 876 chr1 38199996 38199997 rs11264095 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 762.000000,4246.000000, 0.152157,0.847843, maf-5-some-pop,maf-5-all-pops 876 chr1 38203266 38203267 rs602421 0 - T T A/C genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3355.000000,1653.000000,1653.000000,3355.000000, 0.334964,0.165036,0.165036,0.334964, maf-5-some-pop,maf-5-all-pops 876 chr1 38203358 38203359 rs545244 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1653.000000,3355.000000, 0.330072,0.669928, maf-5-some-pop,maf-5-all-pops 876 chr1 38207041 38207042 rs12130112 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 794.000000,4214.000000, 0.158546,0.841454, maf-5-some-pop,maf-5-all-pops 876 chr1 38207228 38207229 rs11264098 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,genotype-conflict 876 chr1 38207314 38207315 rs478492 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3218.000000,1790.000000, 0.642572,0.357428, maf-5-some-pop,maf-5-all-pops 876 chr1 38211140 38211141 rs587026 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1853.000000,3155.000000,3155.000000,1853.000000, 0.185004,0.314996,0.314996,0.185004, maf-5-some-pop,maf-5-all-pops,genotype-conflict 876 chr1 38221107 38221108 rs655055 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 93.000000,4915.000000,4915.000000,93.000000, 0.009285,0.490715,0.490715,0.009285, maf-5-some-pop 876 chr1 38222120 38222121 rs640218 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2262.000000,2746.000000,2746.000000,2262.000000, 0.225839,0.274161,0.274161,0.225839, maf-5-some-pop,maf-5-all-pops 876 chr1 38222489 38222490 rs506251 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1885.000000,3123.000000, 0.376398,0.623602, maf-5-some-pop,maf-5-all-pops 876 chr1 38222804 38222805 rs508992 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3121.000000,1887.000000, 0.623203,0.376797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 876 chr1 38227085 38227086 rs4653328 0 + A A A/T genomic single unknown 0 0 missense exact 1 21 1000GENOMES,AFFY,BGI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3239.000000,1769.000000, 0.646765,0.353235, maf-5-some-pop,maf-5-all-pops 876 chr1 38231068 38231069 rs10157024 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4191.000000,817.000000, 0.836861,0.163139, maf-5-some-pop 876 chr1 38233398 38233399 rs482818 0 - C C C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 876 chr1 38243784 38243785 rs489408 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1403.000000,3605.000000,3605.000000,1403.000000, 0.140076,0.359924,0.359924,0.140076, maf-5-some-pop 876 chr1 38244760 38244761 rs626352 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 366.000000,4642.000000,4642.000000,366.000000, 0.036542,0.463458,0.463458,0.036542, maf-5-some-pop,genotype-conflict 876 chr1 38246765 38246766 rs6426032 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 A,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop 876 chr1 38254610 38254611 rs664939 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 695.000000,4313.000000, 0.138778,0.861222, maf-5-some-pop 876 chr1 38256165 38256166 rs579689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop,genotype-conflict 876 chr1 38258643 38258644 rs12563037 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1039.000000,3969.000000, 0.207468,0.792532, maf-5-some-pop 876 chr1 38271494 38271495 rs3795494 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2148.000000,2860.000000, 0.428914,0.571086, maf-5-some-pop,maf-5-all-pops,genotype-conflict 877 chr1 38275801 38275802 rs473279 0 - T T A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1590.000000,3418.000000,3418.000000,1590.000000, 0.158746,0.341254,0.341254,0.158746, maf-5-some-pop 877 chr1 38279986 38279987 rs3748682 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop,microattr-tpa 877 chr1 38361016 38361017 rs4329476 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2632.000000,2376.000000, 0.525559,0.474441, maf-5-some-pop,maf-5-all-pops 877 chr1 38385745 38385746 rs6604852 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 877 chr1 38395946 38395947 rs16824514 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 2515.000000,2493.000000, 0.502196,0.497804, maf-5-some-pop,maf-5-all-pops 878 chr1 38415314 38415315 rs16824518 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1624.000000,3384.000000, 0.324281,0.675719, maf-5-some-pop,genotype-conflict 878 chr1 38420269 38420270 rs899743 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 878 chr1 38422543 38422544 rs12120737 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1857.000000,3151.000000, 0.370807,0.629193, maf-5-some-pop,maf-5-all-pops 878 chr1 38423587 38423588 rs1050257 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SEQUENOM,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 4622.000000,386.000000,386.000000,4622.000000, 0.461462,0.038538,0.038538,0.461462, maf-5-some-pop,genotype-conflict 878 chr1 38423852 38423853 rs9293 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 878 chr1 38444332 38444333 rs6660034 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 393.000000,4615.000000, 0.078474,0.921526, maf-5-some-pop 878 chr1 38445653 38445654 rs10890238 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2937.000000,2071.000000, 0.586462,0.413538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 878 chr1 38452058 38452059 rs7528185 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3544.000000,1464.000000, 0.707668,0.292332, maf-5-some-pop,maf-5-all-pops 878 chr1 38469190 38469191 rs7555822 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop 878 chr1 38469499 38469500 rs6600436 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3127.000000,1881.000000, 0.624401,0.375599, maf-5-some-pop,maf-5-all-pops 878 chr1 38469945 38469946 rs6600437 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 878 chr1 38474646 38474647 rs6600440 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 27.000000,4981.000000, 0.005391,0.994609, 878 chr1 38482355 38482356 rs11211383 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop,maf-5-all-pops,genotype-conflict 878 chr1 38491264 38491265 rs12408171 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2453.000000,2555.000000, 0.489816,0.510184, maf-5-some-pop,maf-5-all-pops 878 chr1 38518684 38518685 rs12121956 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop 878 chr1 38522091 38522092 rs535056 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1288.000000,3720.000000,3720.000000,1288.000000, 0.128594,0.371406,0.371406,0.128594, maf-5-some-pop 878 chr1 38525032 38525033 rs6676868 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop 878 chr1 38531744 38531745 rs12750006 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4200.000000,808.000000, 0.838658,0.161342, maf-5-some-pop 878 chr1 38533000 38533001 rs12733163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1191.000000,3817.000000, 0.237819,0.762181, maf-5-some-pop,maf-5-all-pops 878 chr1 38533864 38533865 rs11205918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,genotype-conflict 879 chr1 38536186 38536187 rs11205944 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1183.000000,3825.000000, 0.236222,0.763778, maf-5-some-pop,maf-5-all-pops,genotype-conflict 879 chr1 38541427 38541428 rs12074522 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop 879 chr1 38544811 38544812 rs12755737 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop 879 chr1 38547296 38547297 rs477882 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 261.000000,4747.000000,4747.000000,261.000000, 0.026058,0.473942,0.473942,0.026058, maf-5-some-pop 879 chr1 38553720 38553721 rs12077698 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop 879 chr1 38555485 38555486 rs7517884 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 879 chr1 38557097 38557098 rs2615812 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1324.000000,3684.000000,3684.000000,1324.000000, 0.132188,0.367812,0.367812,0.132188, maf-5-some-pop 879 chr1 38559048 38559049 rs486563 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 581.000000,4427.000000,4427.000000,581.000000, 0.058007,0.441993,0.441993,0.058007, maf-5-some-pop,genotype-conflict 879 chr1 38559393 38559394 rs1108183 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2453.000000,2555.000000, 0.489816,0.510184, maf-5-some-pop 879 chr1 38560590 38560591 rs6680272 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 879 chr1 38563922 38563923 rs578107 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2800.000000,2208.000000,2208.000000,2800.000000, 0.279553,0.220447,0.220447,0.279553, maf-5-some-pop,maf-5-all-pops 879 chr1 38570852 38570853 rs2615811 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3018.000000,1990.000000,1990.000000,3018.000000, 0.301318,0.198682,0.198682,0.301318, maf-5-some-pop,maf-5-all-pops 879 chr1 38583828 38583829 rs568476 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1946.000000,3062.000000,3062.000000,1946.000000, 0.194289,0.305711,0.305711,0.194289, maf-5-some-pop,maf-5-all-pops 879 chr1 38584748 38584749 rs10889024 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 879 chr1 38587170 38587171 rs1466424 0 - G G C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 879 chr1 38587463 38587464 rs16824606 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 826.000000,4182.000000, 0.164936,0.835064, maf-5-some-pop 879 chr1 38596209 38596210 rs6665139 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 879 chr1 38596775 38596776 rs6675190 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 879 chr1 38601479 38601480 rs6600309 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop 879 chr1 38602072 38602073 rs7547921 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 879 chr1 38606399 38606400 rs7551307 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1482.000000,3526.000000, 0.295927,0.704073, maf-5-some-pop 879 chr1 38606454 38606455 rs2615814 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 715.000000,4293.000000,4293.000000,715.000000, 0.071386,0.428614,0.428614,0.071386, maf-5-some-pop 879 chr1 38609123 38609124 rs2376923 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop,genotype-conflict 879 chr1 38609324 38609325 rs4593783 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3715.000000,1293.000000, 0.741813,0.258187, maf-5-some-pop 879 chr1 38609839 38609840 rs11207487 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop 879 chr1 38614866 38614867 rs2085993 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 709.000000,4299.000000,4299.000000,709.000000, 0.070787,0.429213,0.429213,0.070787, maf-5-some-pop 879 chr1 38618179 38618180 rs4539095 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 879 chr1 38619027 38619028 rs2376924 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 41.000000,4967.000000, 0.008187,0.991813, maf-5-some-pop,genotype-conflict 879 chr1 38624502 38624503 rs4970569 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1532.000000,3476.000000, 0.305911,0.694089, maf-5-some-pop,maf-5-all-pops,genotype-conflict 879 chr1 38624777 38624778 rs4970570 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3474.000000,1534.000000, 0.693690,0.306310, maf-5-some-pop,maf-5-all-pops 879 chr1 38625374 38625375 rs1809329 0 - T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 879 chr1 38626582 38626583 rs6679930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop 879 chr1 38630588 38630589 rs10889251 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1535.000000,3473.000000, 0.306510,0.693490, maf-5-some-pop,maf-5-all-pops 879 chr1 38630861 38630862 rs6693777 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 879 chr1 38631262 38631263 rs10889252 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3475.000000,1533.000000, 0.693890,0.306110, maf-5-some-pop,maf-5-all-pops 879 chr1 38632110 38632111 rs16824664 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 1069.000000,3939.000000, 0.213458,0.786542, maf-5-some-pop 879 chr1 38637697 38637698 rs2126585 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4599.000000,409.000000,409.000000,4599.000000, 0.459165,0.040835,0.040835,0.459165, maf-5-some-pop 879 chr1 38640339 38640340 rs1462811 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 360.000000,4648.000000,4648.000000,360.000000, 0.035942,0.464058,0.464058,0.035942, maf-5-some-pop 879 chr1 38640550 38640551 rs898983 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 122.000000,4886.000000,4886.000000,122.000000, 0.012181,0.487819,0.487819,0.012181, maf-5-some-pop 879 chr1 38644779 38644780 rs6656808 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop 879 chr1 38644860 38644861 rs7553012 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 702.000000,4306.000000, 0.140176,0.859824, maf-5-some-pop 879 chr1 38645707 38645708 rs898982 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4255.000000,753.000000,753.000000,4255.000000, 0.424820,0.075180,0.075180,0.424820, maf-5-some-pop 879 chr1 38646817 38646818 rs1381843 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 879 chr1 38647365 38647366 rs16824718 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 879 chr1 38649310 38649311 rs10789143 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2796.000000,2212.000000, 0.558307,0.441693, maf-5-some-pop,maf-5-all-pops 879 chr1 38650056 38650057 rs16824722 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3663.000000,1345.000000, 0.731430,0.268570, maf-5-some-pop,maf-5-all-pops 879 chr1 38650916 38650917 rs17534243 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop,genotype-conflict 879 chr1 38651443 38651444 rs6666216 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 378.000000,4630.000000, 0.075479,0.924521, maf-5-some-pop,genotype-conflict 879 chr1 38651607 38651608 rs10889449 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3122.000000,1886.000000, 0.623403,0.376597, maf-5-some-pop,maf-5-all-pops 879 chr1 38651989 38651990 rs11579210 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 879 chr1 38652271 38652272 rs12029651 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop 879 chr1 38656715 38656716 rs11208403 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop,genotype-conflict 879 chr1 38657883 38657884 rs1564119 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2602.000000,2406.000000,2406.000000,2602.000000, 0.259784,0.240216,0.240216,0.259784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 879 chr1 38658151 38658152 rs898980 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4552.000000,456.000000,456.000000,4552.000000, 0.454473,0.045527,0.045527,0.454473, maf-5-some-pop 879 chr1 38658716 38658717 rs4300184 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop,genotype-conflict 879 chr1 38661360 38661361 rs998448 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop,genotype-conflict 879 chr1 38661507 38661508 rs11208522 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop 879 chr1 38664526 38664527 rs7537802 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop 880 chr1 38667658 38667659 rs11208641 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop 880 chr1 38667703 38667704 rs898978 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3469.000000,1539.000000,1539.000000,3469.000000, 0.346346,0.153654,0.153654,0.346346, maf-5-some-pop,maf-5-all-pops 880 chr1 38668299 38668300 rs898976 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 939.000000,4069.000000,4069.000000,939.000000, 0.093750,0.406250,0.406250,0.093750, maf-5-some-pop 880 chr1 38672208 38672209 rs12075354 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2409.000000,2599.000000, 0.481030,0.518970, maf-5-some-pop,maf-5-all-pops 880 chr1 38676953 38676954 rs12407328 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop 880 chr1 38679380 38679381 rs12407274 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 880 chr1 38679545 38679546 rs16824769 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 880 chr1 38681025 38681026 rs6683126 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1316.000000,3692.000000, 0.262780,0.737220, maf-5-some-pop 880 chr1 38685556 38685557 rs16824788 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop,maf-5-all-pops 880 chr1 38685909 38685910 rs16866160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop 880 chr1 38687059 38687060 rs6685558 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops 880 chr1 38696969 38696970 rs11209258 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1504.000000,3504.000000, 0.300319,0.699681, maf-5-some-pop,maf-5-all-pops 880 chr1 38706464 38706465 rs869007 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 259.000000,4749.000000,4749.000000,259.000000, 0.025859,0.474141,0.474141,0.025859, maf-5-some-pop 880 chr1 38711631 38711632 rs12095190 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 880 chr1 38712155 38712156 rs1755304 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4426.000000,582.000000, 0.883786,0.116214, maf-5-some-pop 880 chr1 38713478 38713479 rs4970577 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1974.000000,3034.000000, 0.394169,0.605831, maf-5-some-pop,maf-5-all-pops 880 chr1 38718064 38718065 rs10493080 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2956.000000,2052.000000, 0.590256,0.409744, maf-5-some-pop,maf-5-all-pops 880 chr1 38718347 38718348 rs4970579 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1786.000000,3222.000000, 0.356629,0.643371, maf-5-some-pop,maf-5-all-pops 880 chr1 38719783 38719784 rs12119990 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops 880 chr1 38719918 38719919 rs928158 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2851.000000,2157.000000, 0.569289,0.430711, maf-5-some-pop,maf-5-all-pops 880 chr1 38721662 38721663 rs11802770 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3021.000000,1987.000000, 0.603235,0.396765, maf-5-some-pop,maf-5-all-pops,microattr-tpa 880 chr1 38723543 38723544 rs10889902 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1012.000000,3996.000000, 0.202077,0.797923, maf-5-some-pop,genotype-conflict 880 chr1 38727024 38727025 rs12028118 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop,genotype-conflict 880 chr1 38727570 38727571 rs967094 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2926.000000,2082.000000, 0.584265,0.415735, maf-5-some-pop,maf-5-all-pops 880 chr1 38728154 38728155 rs1329975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2653.000000,2355.000000, 0.529752,0.470248, maf-5-some-pop,maf-5-all-pops 880 chr1 38731621 38731622 rs12028799 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,maf-5-all-pops 880 chr1 38732246 38732247 rs2637882 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 664.000000,4344.000000,4344.000000,664.000000, 0.066294,0.433706,0.433706,0.066294, maf-5-some-pop 880 chr1 38732658 38732659 rs2773171 0 - A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 880 chr1 38735870 38735871 rs16824830 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop 880 chr1 38736873 38736874 rs6698091 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2147.000000,2861.000000, 0.428714,0.571286, maf-5-some-pop,genotype-conflict 880 chr1 38737592 38737593 rs2773158 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop,genotype-conflict 880 chr1 38738689 38738690 rs6701799 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4447.000000,561.000000, 0.887979,0.112021, maf-5-some-pop 880 chr1 38739493 38739494 rs1329972 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 1644.000000,3364.000000, 0.328275,0.671725, maf-5-some-pop,maf-5-all-pops 880 chr1 38740330 38740331 rs2773160 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 905.000000,4103.000000, 0.180711,0.819289, maf-5-some-pop 880 chr1 38742897 38742898 rs11805197 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop 880 chr1 38742928 38742929 rs11210089 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 880 chr1 38747959 38747960 rs1543632 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 934.000000,4074.000000, 0.186502,0.813498, maf-5-some-pop 880 chr1 38750268 38750269 rs6600377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1779.000000,3229.000000, 0.355232,0.644768, maf-5-some-pop,maf-5-all-pops 880 chr1 38757404 38757405 rs2773165 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3932.000000,1076.000000, 0.785144,0.214856, maf-5-some-pop,genotype-conflict 880 chr1 38759942 38759943 rs1361865 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 1430.000000,3578.000000, 0.285543,0.714457, maf-5-some-pop 880 chr1 38764345 38764346 rs12091117 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 685.000000,4323.000000, 0.136781,0.863219, maf-5-some-pop,maf-5-all-pops 880 chr1 38764388 38764389 rs12089890 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 880 chr1 38766297 38766298 rs1329969 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1738.000000,3270.000000, 0.347045,0.652955, maf-5-some-pop,maf-5-all-pops 880 chr1 38766991 38766992 rs1755301 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 966.000000,4042.000000, 0.192891,0.807109, maf-5-some-pop 880 chr1 38767799 38767800 rs7546508 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop 880 chr1 38783084 38783085 rs1778053 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3256.000000,1752.000000, 0.650160,0.349840, maf-5-some-pop,maf-5-all-pops 880 chr1 38790637 38790638 rs1778041 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1762.000000,3246.000000,3246.000000,1762.000000, 0.175919,0.324081,0.324081,0.175919, maf-5-some-pop,maf-5-all-pops 880 chr1 38790817 38790818 rs17477167 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop,genotype-conflict 880 chr1 38791967 38791968 rs913863 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2322.000000,2686.000000,2686.000000,2322.000000, 0.231829,0.268171,0.268171,0.231829, maf-5-some-pop,maf-5-all-pops,genotype-conflict 880 chr1 38792150 38792151 rs2798808 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop 880 chr1 38792564 38792565 rs2798809 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 880 chr1 38792575 38792576 rs16824910 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop 880 chr1 38793725 38793726 rs2480699 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2376.000000,2632.000000, 0.474441,0.525559, maf-5-some-pop,maf-5-all-pops,genotype-conflict 880 chr1 38795784 38795785 rs2798812 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2669.000000,2339.000000, 0.532947,0.467053, maf-5-some-pop,maf-5-all-pops 881 chr1 38797314 38797315 rs2798814 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3987.000000,1021.000000, 0.796126,0.203874, maf-5-some-pop,genotype-conflict 881 chr1 38799801 38799802 rs16824933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 881 chr1 38800023 38800024 rs1343462 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2993.000000,2015.000000, 0.597644,0.402356, maf-5-some-pop,maf-5-all-pops 881 chr1 38804338 38804339 rs2840546 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3927.000000,1081.000000,1081.000000,3927.000000, 0.392073,0.107927,0.107927,0.392073, maf-5-some-pop 881 chr1 38804867 38804868 rs1110113 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2868.000000,2140.000000, 0.572684,0.427316, maf-5-some-pop,maf-5-all-pops 881 chr1 38806629 38806630 rs6679637 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop 881 chr1 38807878 38807879 rs2798796 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3953.000000,1055.000000,1055.000000,3953.000000, 0.394669,0.105331,0.105331,0.394669, maf-5-some-pop 881 chr1 38809579 38809580 rs12131971 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 952.000000,4056.000000, 0.190096,0.809904, maf-5-some-pop 881 chr1 38813956 38813957 rs2840557 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3714.000000,1294.000000, 0.741613,0.258387, maf-5-some-pop,maf-5-all-pops 881 chr1 38814768 38814769 rs17478170 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,genotype-conflict 881 chr1 38816120 38816121 rs16824977 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,genotype-conflict 881 chr1 38816240 38816241 rs1891851 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1659.000000,3349.000000, 0.331270,0.668730, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38829064 38829065 rs11807564 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 G,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 881 chr1 38829223 38829224 rs2040073 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2796.000000,2212.000000, 0.558307,0.441693, maf-5-some-pop,maf-5-all-pops 881 chr1 38835057 38835058 rs16824993 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 881 chr1 38836185 38836186 rs2798798 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 3388.000000,1620.000000, 0.676518,0.323482, maf-5-some-pop 881 chr1 38836630 38836631 rs16825000 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 881 chr1 38842048 38842049 rs2840564 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,maf-5-all-pops 881 chr1 38843015 38843016 rs4278342 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38844956 38844957 rs17537884 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,genotype-conflict 881 chr1 38845034 38845035 rs3924976 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 4895.000000,113.000000,113.000000,4895.000000, 0.488718,0.011282,0.011282,0.488718, maf-5-some-pop,genotype-conflict 881 chr1 38845584 38845585 rs6701668 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2617.000000,2391.000000, 0.522564,0.477436, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38847468 38847469 rs12724197 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,genotype-conflict 881 chr1 38848995 38848996 rs11210654 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2344.000000,2664.000000, 0.468051,0.531949, maf-5-some-pop 881 chr1 38850303 38850304 rs4284229 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3454.000000,1554.000000, 0.689696,0.310304, maf-5-some-pop,maf-5-all-pops 881 chr1 38850996 38850997 rs7534892 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,maf-5-all-pops 881 chr1 38851672 38851673 rs6678679 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 1442.000000,3566.000000, 0.287939,0.712061, maf-5-some-pop 881 chr1 38866115 38866116 rs4970590 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1008.000000,4000.000000, 0.201278,0.798722, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38880714 38880715 rs6678251 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1863.000000,3145.000000, 0.372005,0.627995, maf-5-some-pop,maf-5-all-pops 881 chr1 38884017 38884018 rs6600426 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1050.000000,3958.000000, 0.209665,0.790335, maf-5-some-pop,genotype-conflict 881 chr1 38884528 38884529 rs4290027 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1592.000000,3416.000000, 0.317891,0.682109, maf-5-some-pop,maf-5-all-pops 881 chr1 38884776 38884777 rs9326125 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 1058.000000,3950.000000, 0.211262,0.788738, maf-5-some-pop 881 chr1 38887350 38887351 rs12723237 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop,genotype-conflict 881 chr1 38898335 38898336 rs16825050 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4962.000000,46.000000, 0.990815,0.009185, 881 chr1 38900642 38900643 rs7530233 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1413.000000,3595.000000, 0.282149,0.717851, maf-5-some-pop,maf-5-all-pops 881 chr1 38900691 38900692 rs7530323 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1413.000000,3595.000000, 0.282149,0.717851, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38903857 38903858 rs7523169 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1353.000000,3655.000000, 0.270168,0.729832, maf-5-some-pop,maf-5-all-pops 881 chr1 38904000 38904001 rs7534508 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38904899 38904900 rs11586139 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 1302.000000,3706.000000, 0.259984,0.740016, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38905125 38905126 rs11588364 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,T, 3707.000000,1301.000000, 0.740216,0.259784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38906636 38906637 rs12567295 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1347.000000,3661.000000, 0.268970,0.731030, maf-5-some-pop,maf-5-all-pops,genotype-conflict 881 chr1 38909452 38909453 rs2494440 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3542.000000,1466.000000, 0.707268,0.292732, maf-5-some-pop,maf-5-all-pops 881 chr1 38909543 38909544 rs945338 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 881 chr1 38910187 38910188 rs2256090 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1302.000000,3706.000000,3706.000000,1302.000000, 0.129992,0.370008,0.370008,0.129992, maf-5-some-pop,maf-5-all-pops 881 chr1 38915250 38915251 rs1006812 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 987.000000,4021.000000,4021.000000,987.000000, 0.098542,0.401458,0.401458,0.098542, maf-5-some-pop,maf-5-all-pops 881 chr1 38915821 38915822 rs2152385 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2874.000000,2134.000000,2134.000000,2874.000000, 0.286941,0.213059,0.213059,0.286941, maf-5-some-pop,maf-5-all-pops 881 chr1 38919422 38919423 rs2252153 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1146.000000,3862.000000,3862.000000,1146.000000, 0.114417,0.385583,0.385583,0.114417, maf-5-some-pop,genotype-conflict 881 chr1 38919708 38919709 rs16825060 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 881 chr1 38920528 38920529 rs12120998 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4188.000000,820.000000, 0.836262,0.163738, maf-5-some-pop 881 chr1 38923129 38923130 rs2251668 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2470.000000,2538.000000, 0.493211,0.506789, maf-5-some-pop 881 chr1 38925396 38925397 rs2248698 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1972.000000,3036.000000,3036.000000,1972.000000, 0.196885,0.303115,0.303115,0.196885, maf-5-some-pop,maf-5-all-pops 881 chr1 38926519 38926520 rs2248569 0 - T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 882 chr1 38931260 38931261 rs2247973 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2008.000000,3000.000000, 0.400958,0.599042, maf-5-some-pop,maf-5-all-pops 882 chr1 38939508 38939509 rs2244403 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3136.000000,1872.000000, 0.626198,0.373802, maf-5-some-pop,maf-5-all-pops 882 chr1 38943544 38943545 rs2255009 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 882 chr1 38952167 38952168 rs10493083 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,microattr-tpa 882 chr1 38954148 38954149 rs12239729 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 882 chr1 38961036 38961037 rs2992443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2096.000000,2912.000000, 0.418530,0.581470, maf-5-some-pop,maf-5-all-pops 882 chr1 38961567 38961568 rs2992432 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3377.000000,1631.000000, 0.674321,0.325679, maf-5-some-pop,maf-5-all-pops,genotype-conflict 882 chr1 38967982 38967983 rs3011203 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 882 chr1 38970341 38970342 rs16825142 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 882 chr1 38971184 38971185 rs12022869 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 882 chr1 38971667 38971668 rs16825143 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 882 chr1 38973700 38973701 rs6684248 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 546.000000,4462.000000, 0.109026,0.890974, maf-5-some-pop 882 chr1 38984338 38984339 rs2184611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3189.000000,1819.000000, 0.636781,0.363219, maf-5-some-pop,maf-5-all-pops 882 chr1 38992740 38992741 rs2992435 0 + C C A/C genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 882 chr1 39009995 39009996 rs11210953 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 882 chr1 39010827 39010828 rs2992439 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3110.000000,1898.000000, 0.621006,0.378994, maf-5-some-pop,maf-5-all-pops 882 chr1 39010847 39010848 rs2992440 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop 882 chr1 39011917 39011918 rs11210966 0 + T T A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 3 C,G,T, 738.000000,19.000000,4251.000000, 0.147364,0.003794,0.848842, maf-5-some-pop 882 chr1 39018190 39018191 rs12074640 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop 882 chr1 39029774 39029775 rs10890297 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop 882 chr1 39030081 39030082 rs4568792 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1023.000000,3985.000000, 0.204273,0.795727, maf-5-some-pop,genotype-conflict 882 chr1 39031167 39031168 rs10749851 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop 882 chr1 39031441 39031442 rs12240006 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 882 chr1 39034942 39034943 rs7541471 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 G,T, 391.000000,4617.000000, 0.078075,0.921925, maf-5-some-pop 882 chr1 39035325 39035326 rs16825207 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop 882 chr1 39035974 39035975 rs16825210 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 724.000000,4284.000000, 0.144569,0.855431, maf-5-some-pop 882 chr1 39039168 39039169 rs16825217 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4327.000000,681.000000, 0.864018,0.135982, maf-5-some-pop 882 chr1 39039194 39039195 rs12089604 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop 882 chr1 39039372 39039373 rs17540712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop,genotype-conflict 882 chr1 39042720 39042721 rs7550410 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2556.000000,2452.000000, 0.510383,0.489617, maf-5-some-pop 882 chr1 39044984 39044985 rs4970604 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,T, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops 882 chr1 39046129 39046130 rs6600434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1340.000000,3668.000000, 0.267572,0.732428, maf-5-some-pop,genotype-conflict 882 chr1 39046199 39046200 rs12048178 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2187.000000,2821.000000, 0.436701,0.563299, maf-5-some-pop 882 chr1 39047118 39047119 rs4970605 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,maf-5-all-pops 882 chr1 39047418 39047419 rs983619 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop 882 chr1 39050785 39050786 rs1001450 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1408.000000,3600.000000, 0.281150,0.718850, maf-5-some-pop,maf-5-all-pops 882 chr1 39051319 39051320 rs1001451 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4115.000000,893.000000, 0.821685,0.178315, maf-5-some-pop 882 chr1 39054556 39054557 rs2985755 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1435.000000,3573.000000, 0.286542,0.713458, maf-5-some-pop,maf-5-all-pops 882 chr1 39059002 39059003 rs1925383 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 883 chr1 39059700 39059701 rs2985757 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP, 2 C,T, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop 883 chr1 39060494 39060495 rs12026014 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2198.000000,2810.000000, 0.438898,0.561102, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39060899 39060900 rs3011179 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 883 chr1 39065973 39065974 rs2985763 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3647.000000,1361.000000, 0.728235,0.271765, maf-5-some-pop,genotype-conflict 883 chr1 39069365 39069366 rs10789451 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 883 chr1 39070485 39070486 rs2985769 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2386.000000,2622.000000, 0.476438,0.523562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39070540 39070541 rs3011188 0 + G G G/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2386.000000,2622.000000, 0.476438,0.523562, maf-5-some-pop,maf-5-all-pops 883 chr1 39070560 39070561 rs7514940 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,T, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 883 chr1 39071155 39071156 rs2985772 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2595.000000,2413.000000, 0.518171,0.481829, maf-5-some-pop,maf-5-all-pops 883 chr1 39071179 39071180 rs12739450 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop,genotype-conflict 883 chr1 39071271 39071272 rs2985774 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2393.000000,2615.000000, 0.477835,0.522165, maf-5-some-pop,maf-5-all-pops 883 chr1 39071349 39071350 rs3011189 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2446.000000,2562.000000, 0.488419,0.511581, maf-5-some-pop,maf-5-all-pops 883 chr1 39076147 39076148 rs12737652 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 883 chr1 39079149 39079150 rs3011199 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop,genotype-conflict 883 chr1 39080100 39080101 rs12077396 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1899.000000,3109.000000, 0.379193,0.620807, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39080430 39080431 rs17482558 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop 883 chr1 39081828 39081829 rs4970606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4055.000000,953.000000, 0.809704,0.190296, maf-5-some-pop 883 chr1 39082232 39082233 rs11211039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop 883 chr1 39082302 39082303 rs4970607 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop 883 chr1 39087603 39087604 rs12037910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 535.000000,4473.000000, 0.106829,0.893171, maf-5-some-pop 883 chr1 39092055 39092056 rs7548027 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop,maf-5-all-pops 883 chr1 39093314 39093315 rs12088653 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 883 chr1 39101529 39101530 rs12089460 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 883 chr1 39103960 39103961 rs17482903 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop 883 chr1 39104268 39104269 rs652451 0 + G G C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4235.000000,773.000000, 0.845647,0.154353, maf-5-some-pop 883 chr1 39107055 39107056 rs688401 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 883 chr1 39107996 39107997 rs594856 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2848.000000,2160.000000,2160.000000,2848.000000, 0.284345,0.215655,0.215655,0.284345, maf-5-some-pop,maf-5-all-pops 883 chr1 39108724 39108725 rs608450 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2849.000000,2159.000000,2159.000000,2849.000000, 0.284445,0.215555,0.215555,0.284445, maf-5-some-pop,maf-5-all-pops 883 chr1 39111494 39111495 rs12045514 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 883 chr1 39119082 39119083 rs10082063 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 883 chr1 39128600 39128601 rs4111953 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1088.000000,3920.000000,3920.000000,1088.000000, 0.108626,0.391374,0.391374,0.108626, maf-5-some-pop,maf-5-all-pops 883 chr1 39135187 39135188 rs16825353 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 2012.000000,2996.000000, 0.401757,0.598243, maf-5-some-pop,maf-5-all-pops 883 chr1 39135265 39135266 rs11578165 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 2092.000000,2916.000000, 0.417732,0.582268, maf-5-some-pop,genotype-conflict 883 chr1 39135473 39135474 rs1930556 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39135728 39135729 rs1930555 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2780.000000,2228.000000,2228.000000,2780.000000, 0.277556,0.222444,0.222444,0.277556, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39135747 39135748 rs4970614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop,genotype-conflict 883 chr1 39137654 39137655 rs11211099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,genotype-conflict 883 chr1 39143055 39143056 rs11585248 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2211.000000,2797.000000, 0.441494,0.558506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39145389 39145390 rs11211112 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 883 chr1 39145900 39145901 rs7551194 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3791.000000,1217.000000, 0.756989,0.243011, maf-5-some-pop,maf-5-all-pops,genotype-conflict 883 chr1 39147239 39147240 rs17484092 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 646.000000,4362.000000, 0.128994,0.871006, maf-5-some-pop 883 chr1 39159099 39159100 rs17484306 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 668.000000,4340.000000, 0.133387,0.866613, maf-5-some-pop 883 chr1 39162557 39162558 rs16825388 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop 883 chr1 39163039 39163040 rs16825389 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 883 chr1 39163071 39163072 rs17556209 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop,genotype-conflict 883 chr1 39164507 39164508 rs7539940 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4230.000000,778.000000, 0.844649,0.155351, maf-5-some-pop 883 chr1 39164660 39164661 rs12409029 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop 883 chr1 39165401 39165402 rs4970620 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop 883 chr1 39165577 39165578 rs12088646 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 883 chr1 39166217 39166218 rs16825392 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop 883 chr1 39166658 39166659 rs10890338 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop 883 chr1 39179453 39179454 rs12048126 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop 883 chr1 39184284 39184285 rs12061942 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop 883 chr1 39186793 39186794 rs17484974 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 549.000000,4459.000000, 0.109625,0.890375, maf-5-some-pop,genotype-conflict 884 chr1 39196897 39196898 rs11211246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4149.000000,859.000000, 0.828474,0.171526, maf-5-some-pop,genotype-conflict 884 chr1 39197063 39197064 rs17556883 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 1858.000000,3150.000000, 0.371006,0.628994, maf-5-some-pop,genotype-conflict 884 chr1 39199380 39199381 rs12065672 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop,genotype-conflict 884 chr1 39201157 39201158 rs1889079 0 + A A A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1243.000000,3765.000000, 0.248203,0.751797, maf-5-some-pop 884 chr1 39202182 39202183 rs3118213 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3909.000000,1099.000000,1099.000000,3909.000000, 0.390276,0.109724,0.109724,0.390276, maf-5-some-pop 884 chr1 39203533 39203534 rs665984 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1090.000000,3918.000000,3918.000000,1090.000000, 0.108826,0.391174,0.391174,0.108826, maf-5-some-pop,genotype-conflict 884 chr1 39209489 39209490 rs7547720 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop,maf-5-all-pops,genotype-conflict 884 chr1 39211989 39211990 rs7518936 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop 884 chr1 39213603 39213604 rs2377375 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2148.000000,2860.000000,2860.000000,2148.000000, 0.214457,0.285543,0.285543,0.214457, maf-5-some-pop,maf-5-all-pops 884 chr1 39213861 39213862 rs11211260 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 719.000000,4289.000000, 0.143570,0.856430, maf-5-some-pop,genotype-conflict 884 chr1 39215162 39215163 rs1412912 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2470.000000,2538.000000, 0.493211,0.506789, maf-5-some-pop,maf-5-all-pops 884 chr1 39216645 39216646 rs6660134 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2533.000000,2475.000000, 0.505791,0.494209, maf-5-some-pop,maf-5-all-pops,genotype-conflict 884 chr1 39217731 39217732 rs675766 0 + A A A/G genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop,genotype-conflict 884 chr1 39217893 39217894 rs4246510 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2372.000000,2636.000000, 0.473642,0.526358, maf-5-some-pop,maf-5-all-pops 884 chr1 39220847 39220848 rs12407738 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2704.000000,2304.000000, 0.539936,0.460064, maf-5-some-pop,maf-5-all-pops 884 chr1 39224234 39224235 rs11211265 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 884 chr1 39224651 39224652 rs2483119 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3767.000000,1241.000000,1241.000000,3767.000000, 0.376098,0.123902,0.123902,0.376098, maf-5-some-pop,genotype-conflict 884 chr1 39224854 39224855 rs695023 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1205.000000,3803.000000,3803.000000,1205.000000, 0.120308,0.379692,0.379692,0.120308, maf-5-some-pop,genotype-conflict 884 chr1 39225302 39225303 rs4147130 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3217.000000,1791.000000, 0.642372,0.357628, maf-5-some-pop,maf-5-all-pops 884 chr1 39229312 39229313 rs12043383 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2027.000000,2981.000000, 0.404752,0.595248, maf-5-some-pop,maf-5-all-pops 884 chr1 39229983 39229984 rs16825491 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 1490.000000,3518.000000, 0.297524,0.702476, maf-5-some-pop 884 chr1 39231798 39231799 rs11586795 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP, 2 A,G, 198.000000,4810.000000, 0.039537,0.960463, maf-5-some-pop 884 chr1 39240156 39240157 rs7512634 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4214.000000,794.000000, 0.841454,0.158546, maf-5-some-pop 884 chr1 39240297 39240298 rs7541810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,genotype-conflict 884 chr1 39242854 39242855 rs12046969 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1505.000000,3503.000000, 0.300519,0.699481, maf-5-some-pop 884 chr1 39245233 39245234 rs16825503 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 884 chr1 39245496 39245497 rs17485749 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,genotype-conflict 884 chr1 39247333 39247334 rs4970629 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 776.000000,4232.000000, 0.154952,0.845048, maf-5-some-pop,genotype-conflict 884 chr1 39247488 39247489 rs12729493 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop,genotype-conflict 884 chr1 39253148 39253149 rs642620 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop 884 chr1 39258673 39258674 rs6675193 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3425.000000,1583.000000, 0.683906,0.316094, maf-5-some-pop,maf-5-all-pops 884 chr1 39274124 39274125 rs9326146 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 793.000000,4215.000000, 0.158347,0.841653, maf-5-some-pop 884 chr1 39279323 39279324 rs1184068 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 884 chr1 39279766 39279767 rs4970631 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2467.000000,2541.000000, 0.492612,0.507388, maf-5-some-pop,maf-5-all-pops 884 chr1 39291143 39291144 rs1320454 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 304.000000,4704.000000,4704.000000,304.000000, 0.030351,0.469649,0.469649,0.030351, maf-5-some-pop 884 chr1 39291248 39291249 rs1171466 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 597.000000,4411.000000,4411.000000,597.000000, 0.059605,0.440395,0.440395,0.059605, maf-5-some-pop 884 chr1 39291707 39291708 rs6690335 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3477.000000,1531.000000, 0.694289,0.305711, maf-5-some-pop,maf-5-all-pops 884 chr1 39299305 39299306 rs16825572 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 884 chr1 39299422 39299423 rs4147108 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3238.000000,1770.000000, 0.646565,0.353435, maf-5-some-pop,maf-5-all-pops 884 chr1 39301197 39301198 rs942839 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 594.000000,4414.000000,4414.000000,594.000000, 0.059305,0.440695,0.440695,0.059305, maf-5-some-pop 884 chr1 39302498 39302499 rs16825583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop 884 chr1 39302695 39302696 rs16825588 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop 885 chr1 39322005 39322006 rs16825606 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 885 chr1 39322322 39322323 rs4360495 0 + C C C/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 588.000000,4420.000000, 0.117412,0.882588, maf-5-some-pop 885 chr1 39328163 39328164 rs1984482 0 - C C G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 4 A,C,G,T, 32.000000,4976.000000,4976.000000,32.000000, 0.003195,0.496805,0.496805,0.003195, 885 chr1 39329699 39329700 rs11538784 0 + G G G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 3793.000000,1215.000000, 0.757388,0.242612, maf-5-some-pop,maf-5-all-pops 885 chr1 39331012 39331013 rs7528685 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1115.000000,3893.000000, 0.222644,0.777356, maf-5-some-pop,maf-5-all-pops,genotype-conflict 885 chr1 39339255 39339256 rs2296456 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PERLEGEN,SI_EXO,SSMP,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 436.000000,4572.000000,4572.000000,436.000000, 0.043530,0.456470,0.456470,0.043530, maf-5-some-pop 885 chr1 39339681 39339682 rs4494114 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1558.000000,3450.000000, 0.311102,0.688898, maf-5-some-pop,maf-5-all-pops 885 chr1 39340606 39340607 rs16825625 0 + A A A/G genomic single unknown 0 0 coding-synon,intron,near-gene-5,ncRNA exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop 885 chr1 39352082 39352083 rs4491033 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 G,T, 1922.000000,3086.000000, 0.383786,0.616214, maf-5-some-pop,maf-5-all-pops 885 chr1 39355350 39355351 rs9438979 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 885 chr1 39355370 39355371 rs9438980 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3451.000000,1557.000000, 0.689097,0.310903, maf-5-some-pop,maf-5-all-pops 885 chr1 39357156 39357157 rs6674910 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 885 chr1 39358142 39358143 rs9438982 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2307.000000,2701.000000, 0.460663,0.539337, maf-5-some-pop,maf-5-all-pops 885 chr1 39359693 39359694 rs7539067 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1557.000000,3451.000000, 0.310903,0.689097, maf-5-some-pop,maf-5-all-pops 885 chr1 39359805 39359806 rs6600450 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop,genotype-conflict 885 chr1 39360729 39360730 rs4388668 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3522.000000,1486.000000, 0.703275,0.296725, maf-5-some-pop,maf-5-all-pops 885 chr1 39361568 39361569 rs12085567 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop 885 chr1 39364106 39364107 rs7530274 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 885 chr1 39364787 39364788 rs4970635 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 636.000000,4372.000000, 0.126997,0.873003, maf-5-some-pop,maf-5-all-pops 885 chr1 39383165 39383166 rs942841 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 885 chr1 39385218 39385219 rs13376568 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 885 chr1 39386733 39386734 rs12057616 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 885 chr1 39386789 39386790 rs12061842 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4036.000000,972.000000, 0.805911,0.194089, maf-5-some-pop,genotype-conflict 885 chr1 39387606 39387607 rs4418560 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop,genotype-conflict 885 chr1 39391213 39391214 rs12028802 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4520.000000,488.000000, 0.902556,0.097444, maf-5-some-pop 885 chr1 39395882 39395883 rs16825658 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop 885 chr1 39396069 39396070 rs6656771 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1438.000000,3570.000000, 0.287141,0.712859, maf-5-some-pop 885 chr1 39398868 39398869 rs10749676 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop,maf-5-all-pops 885 chr1 39404550 39404551 rs6600278 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,genotype-conflict 885 chr1 39404867 39404868 rs12035946 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4501.000000,507.000000, 0.898762,0.101238, maf-5-some-pop,maf-5-all-pops 885 chr1 39406643 39406644 rs6422258 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop,genotype-conflict 885 chr1 39409134 39409135 rs11807662 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop 885 chr1 39412101 39412102 rs9659976 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3253.000000,1755.000000, 0.649561,0.350439, maf-5-some-pop,maf-5-all-pops 885 chr1 39425488 39425489 rs4475740 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1097.000000,3911.000000, 0.219050,0.780950, maf-5-some-pop,maf-5-all-pops,genotype-conflict 885 chr1 39430178 39430179 rs7525341 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 835.000000,4173.000000, 0.166733,0.833267, maf-5-some-pop 885 chr1 39430261 39430262 rs7548458 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop,genotype-conflict 885 chr1 39431044 39431045 rs6665494 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop,maf-5-all-pops 885 chr1 39438888 39438889 rs4660446 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1517.000000,3491.000000, 0.302915,0.697085, maf-5-some-pop,maf-5-all-pops 885 chr1 39439001 39439002 rs11205483 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops,genotype-conflict 885 chr1 39439537 39439538 rs7537437 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,genotype-conflict 885 chr1 39447321 39447322 rs3934859 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4559.000000,449.000000, 0.910343,0.089657, maf-5-some-pop 885 chr1 39451856 39451857 rs6696013 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop,genotype-conflict 886 chr1 39458109 39458110 rs7553434 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3404.000000,1604.000000, 0.679712,0.320288, maf-5-some-pop,maf-5-all-pops 886 chr1 39458203 39458204 rs10888609 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop 886 chr1 39458695 39458696 rs2889682 0 - A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 886 chr1 39458880 39458881 rs11205515 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2190.000000,2818.000000, 0.437300,0.562700, maf-5-some-pop,maf-5-all-pops,genotype-conflict 886 chr1 39466625 39466626 rs11205525 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 886 chr1 39483128 39483129 rs1555745 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2312.000000,2696.000000, 0.461661,0.538339, maf-5-some-pop,maf-5-all-pops 886 chr1 39493120 39493121 rs1555741 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2305.000000,2703.000000,2703.000000,2305.000000, 0.230132,0.269868,0.269868,0.230132, maf-5-some-pop,maf-5-all-pops 886 chr1 39503842 39503843 rs7554800 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop 886 chr1 39503877 39503878 rs7554809 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2705.000000,2303.000000, 0.540136,0.459864, maf-5-some-pop,maf-5-all-pops 886 chr1 39504026 39504027 rs6600283 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4641.000000,367.000000, 0.926717,0.073283, maf-5-some-pop 886 chr1 39507160 39507161 rs10888650 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3762.000000,1246.000000, 0.751198,0.248802, maf-5-some-pop,maf-5-all-pops 886 chr1 39525200 39525201 rs6692557 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3040.000000,1968.000000, 0.607029,0.392971, maf-5-some-pop,maf-5-all-pops,genotype-conflict 886 chr1 39527910 39527911 rs7550065 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2087.000000,2921.000000, 0.416733,0.583267, maf-5-some-pop,maf-5-all-pops 886 chr1 39542128 39542129 rs12142033 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 864.000000,4144.000000, 0.172524,0.827476, maf-5-some-pop,maf-5-all-pops 886 chr1 39550620 39550621 rs7546735 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop,genotype-conflict 886 chr1 39550822 39550823 rs12094244 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 886 chr1 39551241 39551242 rs260970 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4060.000000,948.000000, 0.810703,0.189297, maf-5-some-pop,maf-5-all-pops 886 chr1 39551620 39551621 rs260969 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3146.000000,1862.000000, 0.628195,0.371805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 886 chr1 39555642 39555643 rs11205632 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop 886 chr1 39560109 39560110 rs364716 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2192.000000,2816.000000,2816.000000,2192.000000, 0.218850,0.281150,0.281150,0.218850, maf-5-some-pop,maf-5-all-pops 886 chr1 39578531 39578532 rs4660165 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4399.000000,609.000000, 0.878395,0.121605, maf-5-some-pop 886 chr1 39581930 39581931 rs7550056 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2884.000000,2124.000000, 0.575879,0.424121, maf-5-some-pop,maf-5-all-pops 887 chr1 39590823 39590824 rs11205665 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4655.000000,353.000000, 0.929513,0.070487, maf-5-some-pop 887 chr1 39617079 39617080 rs6679564 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2033.000000,2975.000000, 0.405950,0.594050, maf-5-some-pop,maf-5-all-pops 887 chr1 39620618 39620619 rs626520 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 887 chr1 39623668 39623669 rs10888683 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2046.000000,2962.000000, 0.408546,0.591454, maf-5-some-pop,maf-5-all-pops 887 chr1 39623851 39623852 rs660882 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 887 chr1 39624760 39624761 rs628523 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop,genotype-conflict 887 chr1 39639652 39639653 rs1537817 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 887 chr1 39639743 39639744 rs1126313 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,C, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop 887 chr1 39643381 39643382 rs16825887 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop,genotype-conflict 887 chr1 39658321 39658322 rs659286 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 266.000000,4742.000000,4742.000000,266.000000, 0.026558,0.473442,0.473442,0.026558, maf-5-some-pop 887 chr1 39660846 39660847 rs3931300 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1699.000000,3309.000000,3309.000000,1699.000000, 0.169629,0.330371,0.330371,0.169629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 887 chr1 39661592 39661593 rs12566054 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 887 chr1 39678989 39678990 rs4660543 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 887 chr1 39679684 39679685 rs663978 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop 887 chr1 39683923 39683924 rs10493086 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop,genotype-conflict 887 chr1 39688458 39688459 rs4660550 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3290.000000,1718.000000, 0.656949,0.343051, maf-5-some-pop,maf-5-all-pops 887 chr1 39702694 39702695 rs2254552 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 578.000000,4430.000000,4430.000000,578.000000, 0.057708,0.442292,0.442292,0.057708, maf-5-some-pop 888 chr1 39718942 39718943 rs12073705 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, maf-5-some-pop,maf-5-all-pops 888 chr1 39719071 39719072 rs2484755 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 282.000000,4726.000000,4726.000000,282.000000, 0.028155,0.471845,0.471845,0.028155, maf-5-some-pop 888 chr1 39719518 39719519 rs16826012 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop 888 chr1 39724803 39724804 rs12071112 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop,maf-5-all-pops 888 chr1 39728963 39728964 rs2484754 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 771.000000,4237.000000,4237.000000,771.000000, 0.076977,0.423023,0.423023,0.076977, maf-5-some-pop 888 chr1 39736333 39736334 rs4660603 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,G, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop 888 chr1 39741973 39741974 rs928680 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4836.000000,172.000000,172.000000,4836.000000, 0.482827,0.017173,0.017173,0.482827, maf-5-some-pop,maf-5-all-pops,genotype-conflict 888 chr1 39743711 39743712 rs2252549 0 - A A A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 888 chr1 39743928 39743929 rs2252538 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 305.000000,4703.000000,4703.000000,305.000000, 0.030451,0.469549,0.469549,0.030451, maf-5-some-pop 888 chr1 39763241 39763242 rs2275187 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2924.000000,2084.000000,2084.000000,2924.000000, 0.291933,0.208067,0.208067,0.291933, maf-5-some-pop,maf-5-all-pops,genotype-conflict 888 chr1 39780801 39780802 rs2377648 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop 888 chr1 39783456 39783457 rs12409249 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,genotype-conflict 888 chr1 39785640 39785641 rs3116389 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3973.000000,1035.000000, 0.793331,0.206669, maf-5-some-pop 888 chr1 39805301 39805302 rs3121891 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4130.000000,878.000000, 0.824681,0.175319, maf-5-some-pop 888 chr1 39817161 39817162 rs11586824 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 888 chr1 39821680 39821681 rs636083 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2938.000000,2070.000000,2070.000000,2938.000000, 0.293331,0.206669,0.206669,0.293331, maf-5-some-pop,maf-5-all-pops,genotype-conflict 888 chr1 39821704 39821705 rs16826103 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4959.000000,49.000000, 0.990216,0.009784, maf-5-some-pop,genotype-conflict 888 chr1 39823865 39823866 rs613851 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 888 chr1 39845621 39845622 rs592264 0 - A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 889 chr1 39846266 39846267 rs1180383 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2084.000000,2924.000000,2924.000000,2084.000000, 0.208067,0.291933,0.291933,0.208067, maf-5-some-pop,maf-5-all-pops 889 chr1 39857191 39857192 rs3768299 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 594.000000,4414.000000, 0.118610,0.881390, maf-5-some-pop 889 chr1 39858497 39858498 rs584763 0 - A A A/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 889 chr1 39859899 39859900 rs41373150 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop 889 chr1 39882000 39882001 rs653064 0 + C C C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop,genotype-conflict 889 chr1 39885976 39885977 rs2171979 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,T, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop,genotype-conflict 889 chr1 39886939 39886940 rs1618798 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop 889 chr1 39898643 39898644 rs11206073 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 889 chr1 39906658 39906659 rs10489935 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop 889 chr1 39908429 39908430 rs11206102 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,TISHKOFF, 2 A,C, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,genotype-conflict 889 chr1 39911219 39911220 rs12069020 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop 889 chr1 39914151 39914152 rs16826152 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop 889 chr1 39914362 39914363 rs668556 0 - G G C/G genomic single unknown 0 0 missense exact 1 34 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 889 chr1 39915034 39915035 rs1180379 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1732.000000,3276.000000,3276.000000,1732.000000, 0.172923,0.327077,0.327077,0.172923, maf-5-some-pop,maf-5-all-pops,genotype-conflict 889 chr1 39919615 39919616 rs6671001 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop 889 chr1 39922302 39922303 rs783841 0 - A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 889 chr1 39929239 39929240 rs7554206 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3367.000000,1641.000000, 0.672324,0.327676, maf-5-some-pop,maf-5-all-pops 889 chr1 39940222 39940223 rs4617393 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2052.000000,2956.000000, 0.409744,0.590256, maf-5-some-pop,maf-5-all-pops 889 chr1 39943452 39943453 rs783827 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 889 chr1 39944390 39944391 rs783829 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4709.000000,299.000000, 0.940296,0.059704, maf-5-some-pop 889 chr1 39945176 39945177 rs783830 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 111.000000,4897.000000,4897.000000,111.000000, 0.011082,0.488918,0.488918,0.011082, maf-5-some-pop,genotype-conflict 889 chr1 39945296 39945297 rs2275767 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2793.000000,2215.000000,2215.000000,2793.000000, 0.278854,0.221146,0.221146,0.278854, maf-5-some-pop,maf-5-all-pops 889 chr1 39947472 39947473 rs1626267 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 211.000000,4797.000000,4797.000000,211.000000, 0.021066,0.478934,0.478934,0.021066, maf-5-some-pop,maf-5-all-pops,genotype-conflict 889 chr1 39959490 39959491 rs902364 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 808.000000,4200.000000,4200.000000,808.000000, 0.080671,0.419329,0.419329,0.080671, maf-5-some-pop 889 chr1 39968823 39968824 rs1539435 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1468.000000,3540.000000,3540.000000,1468.000000, 0.146565,0.353435,0.353435,0.146565, maf-5-some-pop 889 chr1 39970456 39970457 rs4660797 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4245.000000,763.000000, 0.847644,0.152356, maf-5-some-pop 889 chr1 39970704 39970705 rs10888807 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4327.000000,681.000000, 0.864018,0.135982, maf-5-some-pop,genotype-conflict 890 chr1 39989185 39989186 rs710911 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop 890 chr1 39992807 39992808 rs1180341 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2593.000000,2415.000000, 0.517772,0.482228, maf-5-some-pop 890 chr1 39992937 39992938 rs9438922 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 890 chr1 40006878 40006879 rs7511929 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop 890 chr1 40007012 40007013 rs1180350 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,genotype-conflict 890 chr1 40013482 40013483 rs12024327 0 + C C A/C genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop 890 chr1 40015840 40015841 rs16826323 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,C, 33.000000,4975.000000, 0.006589,0.993411, 890 chr1 40022776 40022777 rs17264866 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop 890 chr1 40025079 40025080 rs6695405 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 890 chr1 40025972 40025973 rs9439004 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 G,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 890 chr1 40027463 40027464 rs12755743 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CLINSEQ_SNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 890 chr1 40028179 40028180 rs4660293 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop,microattr-tpa,genotype-conflict 890 chr1 40035181 40035182 rs9438926 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 890 chr1 40036846 40036847 rs2293476 0 + G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,genotype-conflict 890 chr1 40039610 40039611 rs16826350 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,near-gene-5 exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 890 chr1 40039706 40039707 rs12028034 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1275.000000,3733.000000, 0.254593,0.745407, maf-5-some-pop,maf-5-all-pops 890 chr1 40040634 40040635 rs6680838 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3978.000000,1030.000000, 0.794329,0.205671, maf-5-some-pop 890 chr1 40049103 40049104 rs11206377 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2305.000000,2703.000000, 0.460264,0.539736, maf-5-some-pop,maf-5-all-pops,genotype-conflict 890 chr1 40050502 40050503 rs7539261 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1461.000000,3547.000000, 0.291733,0.708267, maf-5-some-pop,maf-5-all-pops,genotype-conflict 890 chr1 40083818 40083819 rs6600293 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 775.000000,4233.000000, 0.154752,0.845248, maf-5-some-pop 890 chr1 40084487 40084488 rs12045644 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4290.000000,718.000000, 0.856629,0.143371, maf-5-some-pop,maf-5-all-pops,genotype-conflict 890 chr1 40089944 40089945 rs6587 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 2555.000000,2453.000000,2453.000000,2555.000000, 0.255092,0.244908,0.244908,0.255092, maf-5-some-pop 890 chr1 40096052 40096053 rs1148945 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3043.000000,1965.000000,1965.000000,3043.000000, 0.303814,0.196186,0.196186,0.303814, maf-5-some-pop,maf-5-all-pops 890 chr1 40097517 40097518 rs3820615 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 264.000000,4744.000000,4744.000000,264.000000, 0.026358,0.473642,0.473642,0.026358, maf-5-some-pop 890 chr1 40104460 40104461 rs784623 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 754.000000,4254.000000,4254.000000,754.000000, 0.075280,0.424720,0.424720,0.075280, maf-5-some-pop 890 chr1 40104583 40104584 rs4660892 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1038.000000,3970.000000, 0.207268,0.792732, maf-5-some-pop 891 chr1 40129400 40129401 rs1180271 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM, 4 A,C,G,T, 78.000000,4930.000000,4930.000000,78.000000, 0.007788,0.492212,0.492212,0.007788, maf-5-some-pop 891 chr1 40135016 40135017 rs784595 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 968.000000,4040.000000, 0.193291,0.806709, maf-5-some-pop 891 chr1 40139552 40139553 rs784600 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1686.000000,3322.000000, 0.336661,0.663339, maf-5-some-pop 891 chr1 40143326 40143327 rs6663003 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 767.000000,4241.000000, 0.153155,0.846845, maf-5-some-pop,genotype-conflict 891 chr1 40144817 40144818 rs10839 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 27 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 3246.000000,1762.000000, 0.648163,0.351837, maf-5-some-pop,maf-5-all-pops,genotype-conflict 891 chr1 40145296 40145297 rs6703320 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 2503.000000,2505.000000, 0.499800,0.500200, maf-5-some-pop 891 chr1 40145615 40145616 rs12039225 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 3910.000000,1098.000000, 0.780751,0.219249, maf-5-some-pop 891 chr1 40145849 40145850 rs17560858 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 C,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 891 chr1 40146252 40146253 rs784629 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,KYUGEN,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4290.000000,718.000000, 0.856629,0.143371, maf-5-some-pop,maf-5-all-pops 891 chr1 40152116 40152117 rs2248221 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2907.000000,2101.000000, 0.580471,0.419529, maf-5-some-pop,maf-5-all-pops 891 chr1 40152675 40152676 rs785108 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop 891 chr1 40153140 40153141 rs477913 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop,maf-5-all-pops 891 chr1 40153747 40153748 rs538302 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 364.000000,4644.000000, 0.072684,0.927316, maf-5-some-pop,genotype-conflict 891 chr1 40154633 40154634 rs41536844 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 700.000000,4308.000000,4308.000000,700.000000, 0.069888,0.430112,0.430112,0.069888, maf-5-some-pop,genotype-conflict 891 chr1 40155187 40155188 rs538758 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3752.000000,1256.000000, 0.749201,0.250799, maf-5-some-pop 891 chr1 40158827 40158828 rs546422 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 4230.000000,778.000000, 0.844649,0.155351, maf-5-some-pop,microattr-tpa 891 chr1 40160147 40160148 rs784192 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_SNP,TISHKOFF, 2 A,C, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 891 chr1 40161012 40161013 rs704771 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 286.000000,4722.000000,4722.000000,286.000000, 0.028554,0.471446,0.471446,0.028554, maf-5-some-pop,genotype-conflict 891 chr1 40168586 40168587 rs12565115 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop 891 chr1 40168864 40168865 rs17561616 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 502.000000,4506.000000, 0.100240,0.899760, maf-5-some-pop,genotype-conflict 891 chr1 40169723 40169724 rs536827 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1252.000000,3756.000000, 0.250000,0.750000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 891 chr1 40178267 40178268 rs785119 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2970.000000,2038.000000, 0.593051,0.406949, maf-5-some-pop,maf-5-all-pops 891 chr1 40179430 40179431 rs16826508 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 891 chr1 40180079 40180080 rs546295 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3730.000000,1278.000000, 0.744808,0.255192, maf-5-some-pop,maf-5-all-pops 891 chr1 40183891 40183892 rs537515 0 - G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 891 chr1 40183921 40183922 rs481423 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3390.000000,1618.000000, 0.676917,0.323083, maf-5-some-pop,maf-5-all-pops 891 chr1 40187806 40187807 rs12138312 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4225.000000,783.000000, 0.843650,0.156350, maf-5-some-pop 891 chr1 40193771 40193772 rs11579412 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 891 chr1 40194902 40194903 rs539853 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1306.000000,3702.000000, 0.260783,0.739217, maf-5-some-pop,maf-5-all-pops 891 chr1 40195573 40195574 rs704785 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3788.000000,1220.000000,1220.000000,3788.000000, 0.378195,0.121805,0.121805,0.378195, maf-5-some-pop,maf-5-all-pops,genotype-conflict 891 chr1 40199853 40199854 rs704787 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 381.000000,4627.000000,4627.000000,381.000000, 0.038039,0.461961,0.461961,0.038039, maf-5-some-pop 891 chr1 40214943 40214944 rs7518431 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 891 chr1 40216992 40216993 rs501523 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4600.000000,408.000000,408.000000,4600.000000, 0.459265,0.040735,0.040735,0.459265, maf-5-some-pop,genotype-conflict 891 chr1 40219064 40219065 rs1046988 0 + C C A/C/G/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3598.000000,1410.000000, 0.718450,0.281550, maf-5-some-pop,maf-5-all-pops 891 chr1 40220805 40220806 rs7547787 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1443.000000,3565.000000, 0.288139,0.711861, maf-5-some-pop,maf-5-all-pops 891 chr1 40221854 40221855 rs502657 0 - G G C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 892 chr1 40241137 40241138 rs2991272 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3146.000000,1862.000000,1862.000000,3146.000000, 0.314097,0.185903,0.185903,0.314097, maf-5-some-pop,maf-5-all-pops 892 chr1 40242444 40242445 rs914961 0 - A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 892 chr1 40246983 40246984 rs7515481 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop 892 chr1 40251815 40251816 rs230325 0 + A A A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,TISHKOFF,WI_SSAHASNP,YUSUKE, 3 A,G,T, 1901.000000,2887.000000,220.000000, 0.379592,0.576478,0.043930, maf-5-some-pop,maf-5-all-pops 892 chr1 40255803 40255804 rs230279 0 + A A A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 2541.000000,2467.000000, 0.507388,0.492612, maf-5-some-pop,maf-5-all-pops 892 chr1 40255871 40255872 rs230280 0 + T T G/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 G,T, 3106.000000,1902.000000, 0.620208,0.379792, maf-5-some-pop,maf-5-all-pops 892 chr1 40257156 40257157 rs524469 0 - T T A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1692.000000,3316.000000,3316.000000,1692.000000, 0.168930,0.331070,0.331070,0.168930, maf-5-some-pop,maf-5-all-pops 892 chr1 40259396 40259397 rs3845579 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop 892 chr1 40259437 40259438 rs230285 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TSC-CSHL, 2 G,T, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop 892 chr1 40264145 40264146 rs11206897 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4672.000000,336.000000, 0.932907,0.067093, maf-5-some-pop 892 chr1 40276519 40276520 rs12745951 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 892 chr1 40283050 40283051 rs230305 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop 892 chr1 40284186 40284187 rs41365844 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,JMKIDD_LAB, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop 892 chr1 40286004 40286005 rs10889022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3464.000000,1544.000000, 0.691693,0.308307, maf-5-some-pop,maf-5-all-pops 892 chr1 40289811 40289812 rs1999573 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3053.000000,1955.000000, 0.609625,0.390375, maf-5-some-pop,maf-5-all-pops 892 chr1 40289956 40289957 rs11576724 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 G,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 892 chr1 40290596 40290597 rs230271 0 + C C A/C genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3031.000000,1977.000000, 0.605232,0.394768, maf-5-some-pop,maf-5-all-pops,genotype-conflict 892 chr1 40290695 40290696 rs4661003 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3025.000000,1983.000000, 0.604034,0.395966, maf-5-some-pop,maf-5-all-pops 892 chr1 40291191 40291192 rs16826583 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 1114.000000,3894.000000, 0.222444,0.777556, maf-5-some-pop 892 chr1 40292910 40292911 rs17569868 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,genotype-conflict 892 chr1 40301091 40301092 rs2050172 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop 892 chr1 40301896 40301897 rs230275 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 892 chr1 40302462 40302463 rs6693041 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1130.000000,3878.000000, 0.225639,0.774361, maf-5-some-pop,maf-5-all-pops 892 chr1 40303626 40303627 rs12123609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,genotype-conflict 892 chr1 40304646 40304647 rs6694437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3877.000000,1131.000000, 0.774161,0.225839, maf-5-some-pop 892 chr1 40306864 40306865 rs1043843 0 - C C A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 624.000000,4384.000000,4384.000000,624.000000, 0.062300,0.437700,0.437700,0.062300, maf-5-some-pop 892 chr1 40308016 40308017 rs3768311 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 4520.000000,488.000000,488.000000,4520.000000, 0.451278,0.048722,0.048722,0.451278, maf-5-some-pop,genotype-conflict 892 chr1 40308917 40308918 rs1974206 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 1132.000000,3876.000000, 0.226038,0.773962, maf-5-some-pop,maf-5-all-pops 892 chr1 40313848 40313849 rs1333742 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop,genotype-conflict 892 chr1 40315887 40315888 rs3738671 0 - A A A/T genomic single unknown 0 0 ncRNA,missense exact 1 19 1000GENOMES,AFFY,APPLERA_GI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 892 chr1 40321257 40321258 rs2131312 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 494.000000,4514.000000,4514.000000,494.000000, 0.049321,0.450679,0.450679,0.049321, maf-5-some-pop 892 chr1 40330380 40330381 rs6686137 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop,genotype-conflict 892 chr1 40343363 40343364 rs11587094 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 892 chr1 40343431 40343432 rs10789049 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1993.000000,3015.000000, 0.397963,0.602037, maf-5-some-pop,maf-5-all-pops,genotype-conflict 892 chr1 40346000 40346001 rs7523024 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 892 chr1 40346128 40346129 rs7533329 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2545.000000,2463.000000, 0.508187,0.491813, maf-5-some-pop,maf-5-all-pops,genotype-conflict 892 chr1 40357267 40357268 rs3131691 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3458.000000,1550.000000,1550.000000,3458.000000, 0.345248,0.154752,0.154752,0.345248, maf-5-some-pop,maf-5-all-pops 892 chr1 40358051 40358052 rs3131690 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 892 chr1 40363053 40363054 rs3134614 0 - G G C/G genomic single unknown 0 0 missense exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 893 chr1 40381452 40381453 rs11207124 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 835.000000,4173.000000, 0.166733,0.833267, maf-5-some-pop 893 chr1 40388375 40388376 rs3117092 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 893 chr1 40389965 40389966 rs3117096 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 277.000000,4731.000000, 0.055312,0.944688, maf-5-some-pop 893 chr1 40390531 40390532 rs1105736 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 C,T, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop 893 chr1 40391751 40391752 rs7542907 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3794.000000,1214.000000, 0.757588,0.242412, maf-5-some-pop 893 chr1 40391763 40391764 rs12409814 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4254.000000,754.000000, 0.849441,0.150559, maf-5-some-pop 893 chr1 40395168 40395169 rs3103780 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2845.000000,2163.000000,2163.000000,2845.000000, 0.284046,0.215954,0.215954,0.284046, maf-5-some-pop,maf-5-all-pops 893 chr1 40402526 40402527 rs7521792 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop 893 chr1 40406880 40406881 rs12137477 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop,maf-5-all-pops 893 chr1 40408812 40408813 rs7524359 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,T, 3.000000,4278.000000,727.000000, 0.000599,0.854233,0.145168, maf-5-some-pop 893 chr1 40423030 40423031 rs937157 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 G,T, 4977.000000,31.000000, 0.993810,0.006190, 893 chr1 40427974 40427975 rs2047007 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop 893 chr1 40433770 40433771 rs3103778 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2466.000000,2542.000000, 0.492412,0.507588, maf-5-some-pop,microattr-tpa 893 chr1 40440621 40440622 rs12072696 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop,genotype-conflict 893 chr1 40442551 40442552 rs10889095 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2147.000000,2861.000000, 0.428714,0.571286, maf-5-some-pop,maf-5-all-pops,genotype-conflict 893 chr1 40442645 40442646 rs3131695 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3494.000000,1514.000000,1514.000000,3494.000000, 0.348842,0.151158,0.151158,0.348842, maf-5-some-pop,maf-5-all-pops 893 chr1 40445666 40445667 rs12071213 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4707.000000,301.000000, 0.939896,0.060104, maf-5-some-pop 893 chr1 40458919 40458920 rs4660371 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 893 chr1 40462661 40462662 rs4233484 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, maf-5-some-pop,maf-5-all-pops,genotype-conflict 893 chr1 40480783 40480784 rs12127899 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,genotype-conflict 893 chr1 40481099 40481100 rs11207310 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3322.000000,1686.000000, 0.663339,0.336661, maf-5-some-pop 893 chr1 40481815 40481816 rs12734278 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 877.000000,4131.000000, 0.175120,0.824880, maf-5-some-pop,maf-5-all-pops 893 chr1 40490661 40490662 rs12730176 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 925.000000,4083.000000, 0.184704,0.815296, maf-5-some-pop,maf-5-all-pops,genotype-conflict 893 chr1 40491764 40491765 rs11207350 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,maf-5-all-pops 893 chr1 40499736 40499737 rs11207374 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 894 chr1 40502253 40502254 rs12081257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 894 chr1 40502499 40502500 rs12070880 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 894 chr1 40503724 40503725 rs12402428 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 931.000000,4077.000000, 0.185903,0.814097, maf-5-some-pop,maf-5-all-pops 894 chr1 40503778 40503779 rs3122411 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40513709 40513710 rs3131683 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2727.000000,2281.000000,2281.000000,2727.000000, 0.272264,0.227736,0.227736,0.272264, maf-5-some-pop,maf-5-all-pops 894 chr1 40515276 40515277 rs3122412 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop,maf-5-all-pops 894 chr1 40515345 40515346 rs4366310 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40515395 40515396 rs4556345 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 824.000000,4184.000000, 0.164537,0.835463, maf-5-some-pop,maf-5-all-pops 894 chr1 40515418 40515419 rs12084809 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 894 chr1 40519522 40519523 rs3122413 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,C, 2708.000000,2300.000000, 0.540735,0.459265, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40522970 40522971 rs3131673 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3299.000000,1709.000000,1709.000000,3299.000000, 0.329373,0.170627,0.170627,0.329373, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40523156 40523157 rs3131672 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3297.000000,1711.000000,1711.000000,3297.000000, 0.329173,0.170827,0.170827,0.329173, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40523327 40523328 rs3122416 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1933.000000,3075.000000, 0.385982,0.614018, maf-5-some-pop,maf-5-all-pops 894 chr1 40524689 40524690 rs3131671 0 - A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 894 chr1 40531093 40531094 rs16826852 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4199.000000,809.000000, 0.838458,0.161542, maf-5-some-pop 894 chr1 40534841 40534842 rs16826856 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 762.000000,4246.000000, 0.152157,0.847843, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40539075 40539076 rs1126973 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 31 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3342.000000,1666.000000,1666.000000,3342.000000, 0.333666,0.166334,0.166334,0.333666, maf-5-some-pop,maf-5-all-pops 894 chr1 40539227 40539228 rs1126972 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 29 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40547286 40547287 rs10789078 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2488.000000,2520.000000, 0.496805,0.503195, maf-5-some-pop,maf-5-all-pops 894 chr1 40547949 40547950 rs3131660 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2478.000000,2530.000000,2530.000000,2478.000000, 0.247404,0.252596,0.252596,0.247404, maf-5-some-pop,maf-5-all-pops 894 chr1 40549239 40549240 rs3122432 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,SC_JCM,SC_SNP, 2 A,C, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 894 chr1 40549929 40549930 rs6688203 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop 894 chr1 40553332 40553333 rs7513553 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3435.000000,1573.000000, 0.685903,0.314097, maf-5-some-pop,maf-5-all-pops 894 chr1 40553443 40553444 rs12118846 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop,maf-5-all-pops,genotype-conflict 894 chr1 40555722 40555723 rs3131650 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1891.000000,3117.000000,3117.000000,1891.000000, 0.188798,0.311202,0.311202,0.188798, maf-5-some-pop,maf-5-all-pops 894 chr1 40555801 40555802 rs3122438 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3896.000000,1112.000000, 0.777955,0.222045, maf-5-some-pop,maf-5-all-pops 894 chr1 40558510 40558511 rs4630120 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1897.000000,3111.000000, 0.378794,0.621206, maf-5-some-pop,maf-5-all-pops 894 chr1 40559247 40559248 rs4660383 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop,genotype-conflict 894 chr1 40559830 40559831 rs7533203 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,genotype-conflict 894 chr1 40588287 40588288 rs12095797 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,ENSEMBL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop,genotype-conflict 894 chr1 40588547 40588548 rs6700346 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop,maf-5-all-pops 894 chr1 40593126 40593127 rs12092389 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCMHGSC_JDW,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop,genotype-conflict 894 chr1 40594471 40594472 rs7539285 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3410.000000,1598.000000, 0.680911,0.319089, maf-5-some-pop 894 chr1 40595282 40595283 rs11207557 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop 894 chr1 40595352 40595353 rs6704147 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop,genotype-conflict 894 chr1 40595840 40595841 rs6702015 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,WUGSC_SSAHASNP, 2 A,C, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 894 chr1 40612198 40612199 rs7556253 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 588.000000,4420.000000, 0.117412,0.882588, maf-5-some-pop 894 chr1 40612368 40612369 rs7548537 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 580.000000,4428.000000, 0.115815,0.884185, maf-5-some-pop 894 chr1 40623319 40623320 rs6656984 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 274.000000,4734.000000, 0.054713,0.945288, maf-5-some-pop 894 chr1 40626917 40626918 rs10493090 0 - G G A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 582.000000,4426.000000,4426.000000,582.000000, 0.058107,0.441893,0.441893,0.058107, maf-5-some-pop,microattr-tpa 895 chr1 40649981 40649982 rs11583132 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop 895 chr1 40657448 40657449 rs6670779 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 895 chr1 40665501 40665502 rs16827039 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop,genotype-conflict 895 chr1 40668726 40668727 rs17878476 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop 895 chr1 40700024 40700025 rs2284445 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3507.000000,1501.000000, 0.700280,0.299720, maf-5-some-pop,maf-5-all-pops 895 chr1 40702569 40702570 rs16827078 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,AFFY,APPLERA_GI,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 895 chr1 40703439 40703440 rs2235986 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 895 chr1 40714033 40714034 rs16827088 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 895 chr1 40733657 40733658 rs7516571 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LUMC-LOVD,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3893.000000,1115.000000, 0.777356,0.222644, clinically-assoc,maf-5-some-pop,maf-5-all-pops,submitted-by-lsdb 895 chr1 40736486 40736487 rs6682701 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2894.000000,2114.000000, 0.577875,0.422125, maf-5-some-pop,maf-5-all-pops 895 chr1 40747918 40747919 rs6691598 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2108.000000,2900.000000, 0.420927,0.579073, maf-5-some-pop,genotype-conflict 895 chr1 40753984 40753985 rs11207778 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,maf-5-all-pops,genotype-conflict 895 chr1 40761847 40761848 rs12121804 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3896.000000,1112.000000, 0.777955,0.222045, maf-5-some-pop,maf-5-all-pops,genotype-conflict 896 chr1 40765560 40765561 rs16827120 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 896 chr1 40766541 40766542 rs41466547 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 896 chr1 40766617 40766618 rs41480445 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 224.000000,4784.000000,4784.000000,224.000000, 0.022364,0.477636,0.477636,0.022364, maf-5-some-pop,maf-5-all-pops 896 chr1 40768624 40768625 rs3737819 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 348.000000,4660.000000,4660.000000,348.000000, 0.034744,0.465256,0.465256,0.034744, maf-5-some-pop 896 chr1 40771972 40771973 rs2076696 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,genotype-conflict 896 chr1 40771993 40771994 rs2281399 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop 896 chr1 40775228 40775229 rs209914 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4081.000000,927.000000,927.000000,4081.000000, 0.407448,0.092552,0.092552,0.407448, maf-5-some-pop 896 chr1 40777841 40777842 rs209918 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2869.000000,2139.000000,2139.000000,2869.000000, 0.286442,0.213558,0.213558,0.286442, maf-5-some-pop,maf-5-all-pops 896 chr1 40781037 40781038 rs1846158 0 - G G C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1167.000000,3841.000000,3841.000000,1167.000000, 0.116514,0.383486,0.383486,0.116514, maf-5-some-pop,maf-5-all-pops 896 chr1 40788960 40788961 rs578039 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1049.000000,3959.000000, 0.209465,0.790535, maf-5-some-pop,maf-5-all-pops 896 chr1 40799426 40799427 rs364798 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2342.000000,2666.000000, 0.467652,0.532348, maf-5-some-pop,maf-5-all-pops,genotype-conflict 896 chr1 40799988 40799989 rs375007 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2343.000000,2665.000000, 0.467851,0.532149, maf-5-some-pop,maf-5-all-pops,genotype-conflict 896 chr1 40803832 40803833 rs6663235 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1789.000000,3219.000000, 0.357228,0.642772, maf-5-some-pop,maf-5-all-pops,genotype-conflict 896 chr1 40803854 40803855 rs407752 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1989.000000,3019.000000,3019.000000,1989.000000, 0.198582,0.301418,0.301418,0.198582, maf-5-some-pop,genotype-conflict 896 chr1 40809668 40809669 rs432803 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1846.000000,3162.000000,3162.000000,1846.000000, 0.184305,0.315695,0.315695,0.184305, maf-5-some-pop,maf-5-all-pops 896 chr1 40809857 40809858 rs453604 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop 896 chr1 40814916 40814917 rs734922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 896 chr1 40837480 40837481 rs11207964 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop 896 chr1 40838635 40838636 rs209573 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,genotype-conflict 896 chr1 40847490 40847491 rs209583 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop,maf-5-all-pops 896 chr1 40856923 40856924 rs381231 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,genotype-conflict 896 chr1 40864295 40864296 rs4660408 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop,genotype-conflict 896 chr1 40865632 40865633 rs2982506 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 736.000000,4272.000000, 0.146965,0.853035, maf-5-some-pop 896 chr1 40865800 40865801 rs2982507 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop,genotype-conflict 896 chr1 40866287 40866288 rs2982508 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop,maf-5-all-pops 896 chr1 40870544 40870545 rs16827275 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop,genotype-conflict 896 chr1 40872355 40872356 rs2935889 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 658.000000,4350.000000,4350.000000,658.000000, 0.065695,0.434305,0.434305,0.065695, maf-5-some-pop,genotype-conflict 896 chr1 40872622 40872623 rs2982510 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3420.000000,1588.000000, 0.682907,0.317093, maf-5-some-pop 896 chr1 40876283 40876284 rs16827281 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop,genotype-conflict 896 chr1 40876454 40876455 rs12563047 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop 896 chr1 40879253 40879254 rs12725229 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,genotype-conflict 896 chr1 40880803 40880804 rs2294755 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,YUSUKE, 2 C,T, 3982.000000,1026.000000, 0.795128,0.204872, maf-5-some-pop 896 chr1 40881040 40881041 rs209606 0 - C C C/G genomic single unknown 0 0 coding-synon exact 1 31 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 896 chr1 40883094 40883095 rs2235701 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop,microattr-tpa 896 chr1 40883131 40883132 rs2235702 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4349.000000,659.000000, 0.868411,0.131589, maf-5-some-pop 896 chr1 40883265 40883266 rs427371 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 288.000000,4720.000000,4720.000000,288.000000, 0.028754,0.471246,0.471246,0.028754, maf-5-some-pop 896 chr1 40885831 40885832 rs11208057 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop,maf-5-all-pops 897 chr1 40901633 40901634 rs909969 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop 897 chr1 40904756 40904757 rs209619 0 + C C C/T genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2051.000000,2957.000000, 0.409545,0.590455, maf-5-some-pop,maf-5-all-pops 897 chr1 40916402 40916403 rs2076493 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 A,G, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop 897 chr1 40921237 40921238 rs12568089 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4304.000000,704.000000, 0.859425,0.140575, maf-5-some-pop,genotype-conflict 897 chr1 40922061 40922062 rs10489434 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,genotype-conflict 897 chr1 40922376 40922377 rs10489435 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4423.000000,585.000000, 0.883187,0.116813, maf-5-some-pop,genotype-conflict 897 chr1 40923018 40923019 rs2272994 0 + G G A/G genomic single unknown 0 0 missense exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,YUSUKE, 2 A,G, 1110.000000,3898.000000, 0.221645,0.778355, maf-5-some-pop,genotype-conflict 897 chr1 40924018 40924019 rs7535790 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops,genotype-conflict 897 chr1 40927958 40927959 rs16827324 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4576.000000,432.000000, 0.913738,0.086262, maf-5-some-pop 897 chr1 40930154 40930155 rs16827325 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop 897 chr1 40930889 40930890 rs3969615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2722.000000,2286.000000, 0.543530,0.456470, maf-5-some-pop,genotype-conflict 897 chr1 40931002 40931003 rs736861 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,genotype-conflict 897 chr1 40938750 40938751 rs4347206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2719.000000,2289.000000, 0.542931,0.457069, maf-5-some-pop,maf-5-all-pops 897 chr1 40939612 40939613 rs6600337 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 2584.000000,2424.000000, 0.515974,0.484026, maf-5-some-pop,maf-5-all-pops 897 chr1 40955155 40955156 rs10789144 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,T, 3681.000000,1327.000000, 0.735024,0.264976, maf-5-some-pop 897 chr1 40966182 40966183 rs7512061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop,maf-5-all-pops,genotype-conflict 897 chr1 40966457 40966458 rs12028179 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2778.000000,2230.000000, 0.554712,0.445288, maf-5-some-pop,maf-5-all-pops 897 chr1 40969062 40969063 rs6666654 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop 897 chr1 40974798 40974799 rs12068587 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2810.000000,2198.000000, 0.561102,0.438898, maf-5-some-pop,maf-5-all-pops 897 chr1 40975259 40975260 rs4607875 0 + G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2797.000000,2211.000000, 0.558506,0.441494, maf-5-some-pop,maf-5-all-pops 897 chr1 40981229 40981230 rs3795344 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,APPLERA_GI,BCM_SSAHASNP,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF,YUSUKE, 4 A,C,G,T, 216.000000,4792.000000,4792.000000,216.000000, 0.021565,0.478435,0.478435,0.021565, maf-5-some-pop,genotype-conflict 897 chr1 40993872 40993873 rs12042242 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3073.000000,1935.000000, 0.613618,0.386382, maf-5-some-pop,maf-5-all-pops 897 chr1 40994049 40994050 rs2184878 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 534.000000,4474.000000, 0.106629,0.893371, maf-5-some-pop 897 chr1 40999474 40999475 rs16827358 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 897 chr1 41001437 41001438 rs16827359 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3082.000000,1926.000000, 0.615415,0.384585, maf-5-some-pop,maf-5-all-pops 897 chr1 41004020 41004021 rs6600342 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2214.000000,2794.000000, 0.442093,0.557907, maf-5-some-pop,maf-5-all-pops 897 chr1 41005204 41005205 rs6700711 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2807.000000,2201.000000, 0.560503,0.439497, maf-5-some-pop,maf-5-all-pops 897 chr1 41006153 41006154 rs16865682 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop 897 chr1 41010453 41010454 rs11208363 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3094.000000,1914.000000, 0.617812,0.382188, maf-5-some-pop,maf-5-all-pops 897 chr1 41011139 41011140 rs10489164 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 897 chr1 41017954 41017955 rs945745 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 897 chr1 41021035 41021036 rs10489165 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop 897 chr1 41022075 41022076 rs11208391 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2435.000000,2573.000000, 0.486222,0.513778, maf-5-some-pop,maf-5-all-pops 898 chr1 41027849 41027850 rs7545012 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3179.000000,1829.000000, 0.634784,0.365216, maf-5-some-pop,maf-5-all-pops 898 chr1 41028209 41028210 rs6600343 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1775.000000,3233.000000, 0.354433,0.645567, maf-5-some-pop,maf-5-all-pops 898 chr1 41029445 41029446 rs7527819 0 + G G A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,G,T, 45.000000,4197.000000,766.000000, 0.008986,0.838059,0.152955, maf-5-some-pop 898 chr1 41030463 41030464 rs17403513 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4524.000000,484.000000, 0.903355,0.096645, maf-5-some-pop 898 chr1 41030486 41030487 rs4660435 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2096.000000,2912.000000, 0.418530,0.581470, maf-5-some-pop,maf-5-all-pops 898 chr1 41045801 41045802 rs12068523 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4364.000000,644.000000, 0.871406,0.128594, maf-5-some-pop,maf-5-all-pops 898 chr1 41049436 41049437 rs16865685 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,genotype-conflict 898 chr1 41050951 41050952 rs4660438 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2954.000000,2054.000000, 0.589856,0.410144, maf-5-some-pop,maf-5-all-pops,genotype-conflict 898 chr1 41059498 41059499 rs16827406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4428.000000,580.000000, 0.884185,0.115815, maf-5-some-pop 898 chr1 41065743 41065744 rs590775 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2749.000000,2259.000000, 0.548922,0.451078, maf-5-some-pop,genotype-conflict 898 chr1 41075208 41075209 rs500586 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3151.000000,1857.000000,1857.000000,3151.000000, 0.314597,0.185403,0.185403,0.314597, maf-5-some-pop,maf-5-all-pops 898 chr1 41075770 41075771 rs7523459 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop 898 chr1 41081353 41081354 rs504242 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 898 chr1 41085925 41085926 rs12059305 0 + G G A/C/G/T genomic single unknown 0 0 near-gene-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 3 A,G,T, 571.000000,4435.000000,2.000000, 0.114018,0.885583,0.000399, maf-5-some-pop 898 chr1 41086223 41086224 rs12125724 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops 898 chr1 41088576 41088577 rs17412556 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 898 chr1 41088675 41088676 rs12117629 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop 898 chr1 41093829 41093830 rs661221 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 626.000000,4382.000000,4382.000000,626.000000, 0.062500,0.437500,0.437500,0.062500, maf-5-some-pop 898 chr1 41093907 41093908 rs7553191 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1187.000000,3821.000000, 0.237021,0.762979, maf-5-some-pop,maf-5-all-pops 898 chr1 41098477 41098478 rs542214 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1463.000000,3545.000000,3545.000000,1463.000000, 0.146066,0.353934,0.353934,0.146066, maf-5-some-pop,genotype-conflict 898 chr1 41106582 41106583 rs4660439 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop,maf-5-all-pops 898 chr1 41106773 41106774 rs7524868 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1166.000000,3842.000000, 0.232827,0.767173, maf-5-some-pop 898 chr1 41107238 41107239 rs7535398 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1083.000000,3925.000000, 0.216254,0.783746, maf-5-some-pop 898 chr1 41107698 41107699 rs1534955 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 898 chr1 41111070 41111071 rs620268 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 541.000000,4467.000000,4467.000000,541.000000, 0.054014,0.445986,0.445986,0.054014, maf-5-some-pop 898 chr1 41111969 41111970 rs1333827 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 433.000000,4575.000000,4575.000000,433.000000, 0.043231,0.456769,0.456769,0.043231, maf-5-some-pop,genotype-conflict 898 chr1 41127975 41127976 rs627178 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 429.000000,4579.000000,4579.000000,429.000000, 0.042831,0.457169,0.457169,0.042831, maf-5-some-pop 898 chr1 41130423 41130424 rs4332353 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1445.000000,3563.000000, 0.288538,0.711462, maf-5-some-pop,maf-5-all-pops 898 chr1 41132174 41132175 rs518437 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4576.000000,432.000000,432.000000,4576.000000, 0.456869,0.043131,0.043131,0.456869, maf-5-some-pop,genotype-conflict 898 chr1 41139583 41139584 rs9438945 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 417.000000,4591.000000, 0.083267,0.916733, maf-5-some-pop 898 chr1 41140984 41140985 rs545218 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1455.000000,3553.000000,3553.000000,1455.000000, 0.145268,0.354732,0.354732,0.145268, maf-5-some-pop,maf-5-all-pops 898 chr1 41154242 41154243 rs556875 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1431.000000,3577.000000,3577.000000,1431.000000, 0.142871,0.357129,0.357129,0.142871, maf-5-some-pop,maf-5-all-pops 898 chr1 41154406 41154407 rs965949 0 - G G C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2439.000000,2569.000000,2569.000000,2439.000000, 0.243510,0.256490,0.256490,0.243510, maf-5-some-pop,maf-5-all-pops 898 chr1 41154812 41154813 rs552147 0 - C C C/G genomic single unknown 0 0 ncRNA exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 899 chr1 41158157 41158158 rs657149 0 - A A G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1458.000000,3550.000000,3550.000000,1458.000000, 0.145567,0.354433,0.354433,0.145567, maf-5-some-pop,maf-5-all-pops 899 chr1 41159228 41159229 rs2223486 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1457.000000,3551.000000,3551.000000,1457.000000, 0.145467,0.354533,0.354533,0.145467, maf-5-some-pop,maf-5-all-pops 899 chr1 41160203 41160204 rs7519348 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1953.000000,3055.000000, 0.389976,0.610024, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41160280 41160281 rs12060189 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop 899 chr1 41165078 41165079 rs7551747 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3553.000000,1455.000000, 0.709465,0.290535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41165875 41165876 rs1008203 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3614.000000,1394.000000,1394.000000,3614.000000, 0.360823,0.139177,0.139177,0.360823, maf-5-some-pop 899 chr1 41167533 41167534 rs569159 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1458.000000,3550.000000,3550.000000,1458.000000, 0.145567,0.354433,0.354433,0.145567, maf-5-some-pop,maf-5-all-pops 899 chr1 41172538 41172539 rs11803654 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1000.000000,4008.000000, 0.199681,0.800319, maf-5-some-pop,maf-5-all-pops 899 chr1 41176465 41176466 rs10489167 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop 899 chr1 41177942 41177943 rs2744808 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1433.000000,3575.000000,3575.000000,1433.000000, 0.143071,0.356929,0.356929,0.143071, maf-5-some-pop 899 chr1 41183104 41183105 rs2744803 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 419.000000,4589.000000,4589.000000,419.000000, 0.041833,0.458167,0.458167,0.041833, maf-5-some-pop 899 chr1 41204568 41204569 rs1057925 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CANCER-GENOME,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2594.000000,2414.000000, 0.517971,0.482029, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41205275 41205276 rs944940 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 424.000000,4584.000000,4584.000000,424.000000, 0.042332,0.457668,0.457668,0.042332, maf-5-some-pop,genotype-conflict 899 chr1 41205451 41205452 rs4660449 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41216153 41216154 rs7535843 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 899 chr1 41222888 41222889 rs16827546 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop 899 chr1 41225353 41225354 rs12743517 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3313.000000,1695.000000, 0.661542,0.338458, maf-5-some-pop,maf-5-all-pops 899 chr1 41225519 41225520 rs10158384 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4574.000000,434.000000, 0.913339,0.086661, maf-5-some-pop 899 chr1 41226601 41226602 rs11208830 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop,maf-5-all-pops 899 chr1 41230213 41230214 rs2361651 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1453.000000,3555.000000,3555.000000,1453.000000, 0.145068,0.354932,0.354932,0.145068, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41231423 41231424 rs823681 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 417.000000,4591.000000,4591.000000,417.000000, 0.041633,0.458367,0.458367,0.041633, maf-5-some-pop 899 chr1 41235945 41235946 rs3754176 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1473.000000,3535.000000,3535.000000,1473.000000, 0.147065,0.352935,0.352935,0.147065, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41237426 41237427 rs12024924 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop 899 chr1 41240470 41240471 rs823674 0 - T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 899 chr1 41240518 41240519 rs823673 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4107.000000,901.000000,901.000000,4107.000000, 0.410044,0.089956,0.089956,0.410044, maf-5-some-pop,genotype-conflict 899 chr1 41245858 41245859 rs2251413 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3629.000000,1379.000000,1379.000000,3629.000000, 0.362320,0.137680,0.137680,0.362320, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41246300 41246301 rs927961 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3628.000000,1380.000000,1380.000000,3628.000000, 0.362220,0.137780,0.137780,0.362220, maf-5-some-pop,maf-5-all-pops 899 chr1 41255119 41255120 rs823671 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3891.000000,1117.000000,1117.000000,3891.000000, 0.388478,0.111522,0.111522,0.388478, maf-5-some-pop,maf-5-all-pops 899 chr1 41255230 41255231 rs7549877 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop 899 chr1 41255386 41255387 rs12723678 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,genotype-conflict 899 chr1 41255475 41255476 rs7547718 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop 899 chr1 41264191 41264192 rs4660462 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3037.000000,1971.000000, 0.606430,0.393570, maf-5-some-pop,maf-5-all-pops 899 chr1 41270162 41270163 rs12408769 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1515.000000,3493.000000, 0.302516,0.697484, maf-5-some-pop,genotype-conflict 899 chr1 41274421 41274422 rs4660175 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,maf-5-all-pops 899 chr1 41275318 41275319 rs878043 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop,maf-5-all-pops 899 chr1 41276072 41276073 rs11208958 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop 899 chr1 41281594 41281595 rs6661888 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 910.000000,4098.000000, 0.181709,0.818291, maf-5-some-pop,genotype-conflict 899 chr1 41286352 41286353 rs4660469 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops,genotype-conflict 899 chr1 41287447 41287448 rs4483396 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1747.000000,3261.000000, 0.348842,0.651158, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41291530 41291531 rs3767942 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2660.000000,2348.000000, 0.531150,0.468850, maf-5-some-pop,maf-5-all-pops 900 chr1 41292968 41292969 rs11806175 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop 900 chr1 41293488 41293489 rs3767944 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1146.000000,3862.000000, 0.228834,0.771166, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41293663 41293664 rs3820524 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1317.000000,3691.000000, 0.262979,0.737021, maf-5-some-pop,maf-5-all-pops 900 chr1 41293856 41293857 rs11801911 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 354.000000,4654.000000, 0.070687,0.929313, maf-5-some-pop,genotype-conflict 900 chr1 41294896 41294897 rs3754175 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 900 chr1 41297410 41297411 rs963377 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 G,T, 2338.000000,2670.000000, 0.466853,0.533147, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41301672 41301673 rs2094468 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,T, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop 900 chr1 41308717 41308718 rs4660472 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4247.000000,761.000000, 0.848043,0.151957, maf-5-some-pop,genotype-conflict 900 chr1 41314357 41314358 rs913380 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1564.000000,3444.000000, 0.312300,0.687700, maf-5-some-pop,genotype-conflict 900 chr1 41314863 41314864 rs879530 0 - T T A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 900 chr1 41315678 41315679 rs11209015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop,maf-5-all-pops 900 chr1 41316779 41316780 rs11209019 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41317019 41317020 rs11209020 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3180.000000,1828.000000, 0.634984,0.365016, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41319051 41319052 rs12564411 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 900 chr1 41325800 41325801 rs11209041 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops 900 chr1 41338664 41338665 rs1359893 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3792.000000,1216.000000, 0.757188,0.242812, maf-5-some-pop,maf-5-all-pops 900 chr1 41343060 41343061 rs11209075 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop,maf-5-all-pops 900 chr1 41346427 41346428 rs35809276 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41349251 41349252 rs11209104 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3992.000000,1016.000000, 0.797125,0.202875, maf-5-some-pop,maf-5-all-pops 900 chr1 41351540 41351541 rs6700929 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops 900 chr1 41351612 41351613 rs10158668 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2693.000000,2315.000000, 0.537740,0.462260, maf-5-some-pop,maf-5-all-pops 900 chr1 41353269 41353270 rs12759412 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 611.000000,4397.000000, 0.122005,0.877995, maf-5-some-pop,genotype-conflict 900 chr1 41356779 41356780 rs12751530 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3641.000000,1367.000000, 0.727037,0.272963, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41364791 41364792 rs6669462 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop 900 chr1 41367297 41367298 rs1576100 0 - T T A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 900 chr1 41368577 41368578 rs12132634 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4042.000000,966.000000, 0.807109,0.192891, maf-5-some-pop,maf-5-all-pops 900 chr1 41371338 41371339 rs6684543 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop,maf-5-all-pops 900 chr1 41372236 41372237 rs11209145 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41374149 41374150 rs11579077 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop 900 chr1 41374442 41374443 rs3856250 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 900 chr1 41383723 41383724 rs16827770 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3468.000000,1540.000000, 0.692492,0.307508, maf-5-some-pop,maf-5-all-pops 900 chr1 41383837 41383838 rs6698251 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 900 chr1 41384435 41384436 rs12031088 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop 900 chr1 41385085 41385086 rs11805475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 817.000000,4191.000000, 0.163139,0.836861, maf-5-some-pop,maf-5-all-pops 900 chr1 41386870 41386871 rs7515340 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1798.000000,3210.000000, 0.359026,0.640974, maf-5-some-pop 900 chr1 41386887 41386888 rs7552587 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops 900 chr1 41387002 41387003 rs7554973 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41388661 41388662 rs7521608 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 272.000000,4736.000000, 0.054313,0.945687, maf-5-some-pop 900 chr1 41389956 41389957 rs17357836 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop,genotype-conflict 900 chr1 41391349 41391350 rs12569014 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3594.000000,1414.000000, 0.717652,0.282348, maf-5-some-pop,maf-5-all-pops,genotype-conflict 900 chr1 41391925 41391926 rs2885329 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops 900 chr1 41391936 41391937 rs4631683 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1020.000000,3988.000000, 0.203674,0.796326, maf-5-some-pop,maf-5-all-pops 900 chr1 41395071 41395072 rs1887542 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1353.000000,3655.000000,3655.000000,1353.000000, 0.135084,0.364916,0.364916,0.135084, maf-5-some-pop,maf-5-all-pops 900 chr1 41395135 41395136 rs11585732 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop,maf-5-all-pops 900 chr1 41396307 41396308 rs12407657 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2389.000000,2619.000000, 0.477037,0.522963, maf-5-some-pop,maf-5-all-pops 900 chr1 41397715 41397716 rs6600358 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3490.000000,1518.000000, 0.696885,0.303115, maf-5-some-pop,maf-5-all-pops 900 chr1 41398438 41398439 rs4660181 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop,genotype-conflict 900 chr1 41398581 41398582 rs7542619 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 900 chr1 41405663 41405664 rs6695161 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2804.000000,2204.000000, 0.559904,0.440096, maf-5-some-pop,maf-5-all-pops 900 chr1 41411248 41411249 rs10889750 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2947.000000,2061.000000, 0.588458,0.411542, maf-5-some-pop,maf-5-all-pops 901 chr1 41421509 41421510 rs12403975 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop 901 chr1 41421572 41421573 rs11579213 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 G,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 901 chr1 41427972 41427973 rs12066993 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1357.000000,3651.000000, 0.270966,0.729034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 901 chr1 41433483 41433484 rs7533657 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3289.000000,1719.000000, 0.656749,0.343251, maf-5-some-pop,maf-5-all-pops 901 chr1 41437416 41437417 rs10789262 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3255.000000,1753.000000, 0.649960,0.350040, maf-5-some-pop,maf-5-all-pops 901 chr1 41447164 41447165 rs7546898 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3902.000000,1106.000000, 0.779153,0.220847, maf-5-some-pop,genotype-conflict 901 chr1 41451435 41451436 rs4430318 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 855.000000,4153.000000, 0.170727,0.829273, maf-5-some-pop,maf-5-all-pops 901 chr1 41453452 41453453 rs4453027 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2941.000000,2067.000000, 0.587260,0.412740, maf-5-some-pop,maf-5-all-pops 901 chr1 41469403 41469404 rs4364871 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop,maf-5-all-pops 901 chr1 41484316 41484317 rs17357905 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop 901 chr1 41490884 41490885 rs10889792 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 3348.000000,1660.000000, 0.668530,0.331470, maf-5-some-pop,genotype-conflict 901 chr1 41507430 41507431 rs7531344 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 446.000000,4562.000000, 0.089058,0.910942, maf-5-some-pop 901 chr1 41526022 41526023 rs9439033 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop,genotype-conflict 901 chr1 41530870 41530871 rs6686842 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3315.000000,1693.000000, 0.661941,0.338059, maf-5-some-pop,microattr-tpa 901 chr1 41537824 41537825 rs12142006 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,C, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop 901 chr1 41538786 41538787 rs2300650 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 4260.000000,748.000000,748.000000,4260.000000, 0.425319,0.074681,0.074681,0.425319, maf-5-some-pop 901 chr1 41539493 41539494 rs6696524 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop,genotype-conflict 901 chr1 41542503 41542504 rs2268677 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4496.000000,512.000000,512.000000,4496.000000, 0.448882,0.051118,0.051118,0.448882, maf-5-some-pop,genotype-conflict 902 chr1 41563085 41563086 rs3819842 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1601.000000,3407.000000,3407.000000,1601.000000, 0.159844,0.340156,0.340156,0.159844, maf-5-some-pop,genotype-conflict 902 chr1 41563328 41563329 rs721651 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 444.000000,4564.000000,4564.000000,444.000000, 0.044329,0.455671,0.455671,0.044329, maf-5-some-pop,genotype-conflict 902 chr1 41565853 41565854 rs3766321 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,G, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 902 chr1 41565927 41565928 rs3766322 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop 902 chr1 41566095 41566096 rs3766323 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 G,T, 456.000000,4552.000000, 0.091054,0.908946, maf-5-some-pop 902 chr1 41569487 41569488 rs2300648 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4551.000000,457.000000,457.000000,4551.000000, 0.454373,0.045627,0.045627,0.454373, maf-5-some-pop 902 chr1 41571020 41571021 rs11209531 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop,genotype-conflict 902 chr1 41573095 41573096 rs2363098 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop,genotype-conflict 902 chr1 41573645 41573646 rs570594 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4819.000000,189.000000,189.000000,4819.000000, 0.481130,0.018870,0.018870,0.481130, maf-5-some-pop,genotype-conflict 902 chr1 41576609 41576610 rs11805536 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 902 chr1 41587411 41587412 rs10789304 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,T, 3793.000000,1215.000000, 0.757388,0.242612, maf-5-some-pop 902 chr1 41609885 41609886 rs213751 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1015.000000,3993.000000,3993.000000,1015.000000, 0.101338,0.398662,0.398662,0.101338, maf-5-some-pop,genotype-conflict 902 chr1 41615357 41615358 rs213769 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2735.000000,2273.000000,2273.000000,2735.000000, 0.273063,0.226937,0.226937,0.273063, maf-5-some-pop,maf-5-all-pops 902 chr1 41619893 41619894 rs213744 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 935.000000,4073.000000,4073.000000,935.000000, 0.093351,0.406649,0.406649,0.093351, maf-5-some-pop 902 chr1 41620315 41620316 rs16827938 0 + C C A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 9 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 3 A,C,T, 458.000000,4547.000000,3.000000, 0.091454,0.907947,0.000599, maf-5-some-pop 902 chr1 41634955 41634956 rs11802778 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop 902 chr1 41657654 41657655 rs16827976 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop,genotype-conflict 902 chr1 41666570 41666571 rs6672508 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 3989.000000,1019.000000, 0.796526,0.203474, maf-5-some-pop 902 chr1 41666928 41666929 rs6672914 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 903 chr1 41684455 41684456 rs12121121 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 1008.000000,4000.000000, 0.201278,0.798722, maf-5-some-pop,genotype-conflict 903 chr1 41684808 41684809 rs12563174 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 G,T, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop 903 chr1 41685634 41685635 rs10889895 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,C, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop,genotype-conflict 903 chr1 41689225 41689226 rs12134050 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 903 chr1 41701746 41701747 rs8179465 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop 903 chr1 41702185 41702186 rs10493093 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 903 chr1 41705017 41705018 rs12123384 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4009.000000,999.000000, 0.800519,0.199481, maf-5-some-pop 903 chr1 41714083 41714084 rs1472570 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 3334.000000,1674.000000,1674.000000,3334.000000, 0.332867,0.167133,0.167133,0.332867, maf-5-some-pop 903 chr1 41722575 41722576 rs10157966 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,WUGSC_SSAHASNP, 2 A,C, 3334.000000,1674.000000, 0.665735,0.334265, maf-5-some-pop 903 chr1 41730150 41730151 rs2275931 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 918.000000,4090.000000,4090.000000,918.000000, 0.091653,0.408347,0.408347,0.091653, maf-5-some-pop 903 chr1 41744820 41744821 rs1892425 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop,genotype-conflict 903 chr1 41745769 41745770 rs2154319 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,microattr-tpa,genotype-conflict 903 chr1 41745969 41745970 rs1892426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 903 chr1 41757056 41757057 rs12035913 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop 903 chr1 41766235 41766236 rs2364535 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 871.000000,4137.000000,4137.000000,871.000000, 0.086961,0.413039,0.413039,0.086961, maf-5-some-pop 903 chr1 41768015 41768016 rs12031103 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop 903 chr1 41768562 41768563 rs6600370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3139.000000,1869.000000, 0.626797,0.373203, maf-5-some-pop,maf-5-all-pops 903 chr1 41782193 41782194 rs11209858 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3088.000000,1920.000000, 0.616613,0.383387, maf-5-some-pop,maf-5-all-pops,genotype-conflict 903 chr1 41783872 41783873 rs2363810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop 903 chr1 41786853 41786854 rs12042464 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 827.000000,4181.000000, 0.165136,0.834864, maf-5-some-pop 903 chr1 41787998 41787999 rs7528407 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop,genotype-conflict 903 chr1 41788264 41788265 rs12043581 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop 903 chr1 41794300 41794301 rs12037129 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop 903 chr1 41794402 41794403 rs17362424 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 903 chr1 41794517 41794518 rs16828117 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop,maf-5-all-pops 903 chr1 41797097 41797098 rs16828119 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop 903 chr1 41797582 41797583 rs12040046 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4149.000000,859.000000, 0.828474,0.171526, maf-5-some-pop 903 chr1 41799534 41799535 rs4660515 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3924.000000,1084.000000, 0.783546,0.216454, maf-5-some-pop,maf-5-all-pops 903 chr1 41800595 41800596 rs7355092 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,genotype-conflict 903 chr1 41802591 41802592 rs4660519 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1069.000000,3939.000000, 0.213458,0.786542, maf-5-some-pop,maf-5-all-pops 903 chr1 41804233 41804234 rs4660522 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,C, 4501.000000,507.000000, 0.898762,0.101238, maf-5-some-pop,genotype-conflict 903 chr1 41808944 41808945 rs7531976 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop 903 chr1 41808971 41808972 rs12757611 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop 903 chr1 41809639 41809640 rs12047439 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 848.000000,4160.000000, 0.169329,0.830671, maf-5-some-pop 903 chr1 41811909 41811910 rs11581329 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop 904 chr1 41812193 41812194 rs4609415 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2683.000000,2325.000000, 0.535743,0.464257, maf-5-some-pop,maf-5-all-pops 904 chr1 41818675 41818676 rs6660265 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 876.000000,4132.000000, 0.174920,0.825080, maf-5-some-pop,genotype-conflict 904 chr1 41821569 41821570 rs4660526 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,G, 738.000000,4270.000000, 0.147364,0.852636, maf-5-some-pop 904 chr1 41821778 41821779 rs4660527 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1984.000000,3024.000000, 0.396166,0.603834, maf-5-some-pop,maf-5-all-pops,genotype-conflict 904 chr1 41822752 41822753 rs7349069 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop 904 chr1 41835060 41835061 rs11581271 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 2369.000000,2639.000000, 0.473043,0.526957, maf-5-some-pop,maf-5-all-pops 904 chr1 41839341 41839342 rs1317557 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 563.000000,4445.000000,4445.000000,563.000000, 0.056210,0.443790,0.443790,0.056210, maf-5-some-pop 904 chr1 41839494 41839495 rs6693260 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3911.000000,1097.000000, 0.780950,0.219050, maf-5-some-pop,genotype-conflict 904 chr1 41840196 41840197 rs4660532 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop,maf-5-all-pops 904 chr1 41844292 41844293 rs11209971 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2541.000000,2467.000000, 0.507388,0.492612, maf-5-some-pop,maf-5-all-pops 904 chr1 41850181 41850182 rs10749805 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2425.000000,2583.000000, 0.484225,0.515775, maf-5-some-pop,maf-5-all-pops 904 chr1 41854216 41854217 rs2886109 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4021.000000,987.000000, 0.802915,0.197085, maf-5-some-pop,genotype-conflict 904 chr1 41854556 41854557 rs4660533 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,genotype-conflict 904 chr1 41854945 41854946 rs2226263 0 - A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 904 chr1 41855173 41855174 rs10889961 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3207.000000,1801.000000, 0.640375,0.359625, maf-5-some-pop,maf-5-all-pops 904 chr1 41856547 41856548 rs12041455 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3180.000000,1828.000000, 0.634984,0.365016, maf-5-some-pop,maf-5-all-pops,genotype-conflict 904 chr1 41858282 41858283 rs7538090 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop,genotype-conflict 904 chr1 41858636 41858637 rs12408148 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3754.000000,1254.000000, 0.749601,0.250399, maf-5-some-pop,maf-5-all-pops,genotype-conflict 904 chr1 41861382 41861383 rs2996016 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4221.000000,787.000000,787.000000,4221.000000, 0.421426,0.078574,0.078574,0.421426, maf-5-some-pop 904 chr1 41861476 41861477 rs16865746 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 284.000000,4724.000000, 0.056709,0.943291, maf-5-some-pop 904 chr1 41862124 41862125 rs10889978 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3843.000000,1165.000000, 0.767372,0.232628, maf-5-some-pop,maf-5-all-pops 904 chr1 41862660 41862661 rs4020548 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,C, 4584.000000,424.000000, 0.915335,0.084665, maf-5-some-pop 904 chr1 41862827 41862828 rs4581272 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_JCM, 2 C,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 904 chr1 41863989 41863990 rs2996013 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 904 chr1 41864970 41864971 rs11210026 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1106.000000,3902.000000, 0.220847,0.779153, maf-5-some-pop,maf-5-all-pops,genotype-conflict 904 chr1 41865761 41865762 rs6667226 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop 904 chr1 41878565 41878566 rs2801958 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3496.000000,1512.000000, 0.698083,0.301917, maf-5-some-pop,maf-5-all-pops 904 chr1 41878679 41878680 rs2801960 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop,maf-5-all-pops 904 chr1 41879080 41879081 rs12402711 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 929.000000,4079.000000, 0.185503,0.814497, maf-5-some-pop,maf-5-all-pops 904 chr1 41895496 41895497 rs2810569 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4245.000000,763.000000, 0.847644,0.152356, maf-5-some-pop,genotype-conflict 904 chr1 41903037 41903038 rs12086029 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3158.000000,1850.000000, 0.630591,0.369409, maf-5-some-pop,maf-5-all-pops 904 chr1 41904020 41904021 rs7517186 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1881.000000,3127.000000, 0.375599,0.624401, maf-5-some-pop,maf-5-all-pops 904 chr1 41904846 41904847 rs4262533 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2010.000000,2998.000000, 0.401358,0.598642, maf-5-some-pop,maf-5-all-pops 904 chr1 41905348 41905349 rs4397649 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop 904 chr1 41909855 41909856 rs7534137 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop 904 chr1 41912374 41912375 rs11584933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 904 chr1 41912984 41912985 rs12142181 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 904 chr1 41913407 41913408 rs2104958 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2761.000000,2247.000000, 0.551318,0.448682, maf-5-some-pop,maf-5-all-pops,genotype-conflict 904 chr1 41913566 41913567 rs12408331 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3122.000000,1886.000000, 0.623403,0.376597, maf-5-some-pop,genotype-conflict 904 chr1 41915882 41915883 rs17358725 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 37.000000,4971.000000, 0.007388,0.992612, 904 chr1 41916263 41916264 rs2810573 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3964.000000,1044.000000, 0.791534,0.208466, maf-5-some-pop 904 chr1 41918969 41918970 rs4660539 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3921.000000,1087.000000, 0.782947,0.217053, maf-5-some-pop,maf-5-all-pops 904 chr1 41919107 41919108 rs12142951 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 904 chr1 41921084 41921085 rs2781250 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 130.000000,4878.000000,4878.000000,130.000000, 0.012979,0.487021,0.487021,0.012979, maf-5-some-pop 904 chr1 41922576 41922577 rs4660540 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 904 chr1 41925049 41925050 rs2483692 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2833.000000,2175.000000,2175.000000,2833.000000, 0.282847,0.217153,0.217153,0.282847, maf-5-some-pop,maf-5-all-pops,genotype-conflict 904 chr1 41926247 41926248 rs11210199 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop 904 chr1 41926651 41926652 rs11590973 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,genotype-conflict 904 chr1 41929251 41929252 rs2781248 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 556.000000,4452.000000,4452.000000,556.000000, 0.055511,0.444489,0.444489,0.055511, maf-5-some-pop 904 chr1 41930475 41930476 rs2810577 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop,genotype-conflict 904 chr1 41932818 41932819 rs12065398 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 904 chr1 41938427 41938428 rs10789371 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops 904 chr1 41938902 41938903 rs13376620 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 904 chr1 41941598 41941599 rs10890041 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop 905 chr1 41944182 41944183 rs6690839 0 + A A A/C/G/T genomic single unknown 0 0 near-gene-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 3 A,C,T, 3730.000000,1272.000000,6.000000, 0.744808,0.253994,0.001198, maf-5-some-pop,maf-5-all-pops 905 chr1 41944439 41944440 rs6678692 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EGP_SNPS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop 905 chr1 41949627 41949628 rs2759257 0 + A A A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 885.000000,4123.000000, 0.176717,0.823283, maf-5-some-pop,maf-5-all-pops 905 chr1 41953744 41953745 rs12718439 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1911.000000,3097.000000, 0.381589,0.618411, maf-5-some-pop,maf-5-all-pops 905 chr1 41957438 41957439 rs6671507 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2091.000000,2917.000000, 0.417532,0.582468, maf-5-some-pop,maf-5-all-pops 905 chr1 41969326 41969327 rs2991345 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1712.000000,3296.000000,3296.000000,1712.000000, 0.170927,0.329073,0.329073,0.170927, maf-5-some-pop,maf-5-all-pops 905 chr1 41971211 41971212 rs11210339 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2381.000000,2627.000000, 0.475439,0.524561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 41971226 41971227 rs12043801 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1111.000000,3897.000000, 0.221845,0.778155, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 41972879 41972880 rs11210344 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop,genotype-conflict 905 chr1 41973348 41973349 rs3738577 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 614.000000,4394.000000,4394.000000,614.000000, 0.061302,0.438698,0.438698,0.061302, maf-5-some-pop,genotype-conflict 905 chr1 41974257 41974258 rs2151674 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2925.000000,2083.000000,2083.000000,2925.000000, 0.292033,0.207967,0.207967,0.292033, maf-5-some-pop,maf-5-all-pops 905 chr1 41983136 41983137 rs16828341 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop 905 chr1 41983911 41983912 rs2810547 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop 905 chr1 41984611 41984612 rs621727 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,maf-5-all-pops 905 chr1 41985452 41985453 rs633297 0 + C C A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,T, 1742.000000,3200.000000,66.000000, 0.347843,0.638978,0.013179, maf-5-some-pop,genotype-conflict 905 chr1 41986065 41986066 rs646228 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,C, 1006.000000,4002.000000, 0.200879,0.799121, maf-5-some-pop 905 chr1 41988633 41988634 rs679449 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP, 4 A,C,G,T, 1009.000000,3999.000000,3999.000000,1009.000000, 0.100739,0.399261,0.399261,0.100739, maf-5-some-pop 905 chr1 41988785 41988786 rs2759249 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4979.000000,29.000000,29.000000,4979.000000, 0.497105,0.002895,0.002895,0.497105, 905 chr1 41991426 41991427 rs881719 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1452.000000,3556.000000,3556.000000,1452.000000, 0.144968,0.355032,0.355032,0.144968, maf-5-some-pop,genotype-conflict 905 chr1 41998848 41998849 rs687766 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1892.000000,3116.000000, 0.377796,0.622204, maf-5-some-pop 905 chr1 42001159 42001160 rs662999 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop,genotype-conflict 905 chr1 42001300 42001301 rs10890105 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop,maf-5-all-pops 905 chr1 42001443 42001444 rs638859 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1315.000000,3693.000000,3693.000000,1315.000000, 0.131290,0.368710,0.368710,0.131290, maf-5-some-pop,genotype-conflict 905 chr1 42001529 42001530 rs639298 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2608.000000,2400.000000,2400.000000,2608.000000, 0.260383,0.239617,0.239617,0.260383, maf-5-some-pop,maf-5-all-pops 905 chr1 42002737 42002738 rs12121881 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4003.000000,1005.000000, 0.799321,0.200679, maf-5-some-pop 905 chr1 42002776 42002777 rs2492068 0 + A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop 905 chr1 42003424 42003425 rs668359 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1975.000000,3033.000000, 0.394369,0.605631, maf-5-some-pop,maf-5-all-pops 905 chr1 42003751 42003752 rs17359178 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop 905 chr1 42005040 42005041 rs6664458 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,PJP, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 905 chr1 42006004 42006005 rs2475839 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2233.000000,2775.000000,2775.000000,2233.000000, 0.222943,0.277057,0.277057,0.222943, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 42008520 42008521 rs10493102 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 636.000000,4372.000000,4372.000000,636.000000, 0.063498,0.436502,0.436502,0.063498, maf-5-some-pop,microattr-tpa 905 chr1 42009003 42009004 rs636850 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1516.000000,3492.000000, 0.302716,0.697284, maf-5-some-pop,maf-5-all-pops 905 chr1 42024025 42024026 rs2475838 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2389.000000,2619.000000,2619.000000,2389.000000, 0.238518,0.261482,0.261482,0.238518, maf-5-some-pop,genotype-conflict 905 chr1 42026022 42026023 rs10789394 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 42026151 42026152 rs1535505 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 978.000000,4030.000000,4030.000000,978.000000, 0.097644,0.402356,0.402356,0.097644, maf-5-some-pop 905 chr1 42031692 42031693 rs7524240 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3066.000000,1942.000000, 0.612220,0.387780, maf-5-some-pop,genotype-conflict 905 chr1 42035642 42035643 rs7519954 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop 905 chr1 42037874 42037875 rs4509569 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 611.000000,4397.000000, 0.122005,0.877995, maf-5-some-pop 905 chr1 42037925 42037926 rs2181279 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 135.000000,4873.000000,4873.000000,135.000000, 0.013478,0.486522,0.486522,0.013478, maf-5-some-pop 905 chr1 42041748 42041749 rs2759251 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 905 chr1 42041805 42041806 rs10749832 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3921.000000,1087.000000, 0.782947,0.217053, maf-5-some-pop,genotype-conflict 905 chr1 42042316 42042317 rs1570355 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2431.000000,2577.000000,2577.000000,2431.000000, 0.242712,0.257288,0.257288,0.242712, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 42042632 42042633 rs6689038 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3426.000000,1582.000000, 0.684105,0.315895, maf-5-some-pop 905 chr1 42045016 42045017 rs12564769 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1386.000000,3622.000000, 0.276757,0.723243, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 42048455 42048456 rs9943082 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,AFFY,APPLERA_GI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,WI_SSAHASNP, 2 A,G, 48.000000,4960.000000, 0.009585,0.990415, maf-5-some-pop 905 chr1 42054813 42054814 rs6600380 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2723.000000,2285.000000, 0.543730,0.456270, maf-5-some-pop,maf-5-all-pops,genotype-conflict 905 chr1 42057728 42057729 rs6679348 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 616.000000,4392.000000, 0.123003,0.876997, maf-5-some-pop 905 chr1 42059154 42059155 rs11210487 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4207.000000,801.000000, 0.840056,0.159944, maf-5-some-pop 905 chr1 42059790 42059791 rs12562333 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop 905 chr1 42059821 42059822 rs1073197 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop,genotype-conflict 905 chr1 42061180 42061181 rs10493100 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 905 chr1 42062083 42062084 rs12731266 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop,genotype-conflict 905 chr1 42073387 42073388 rs6600383 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop,genotype-conflict 905 chr1 42073904 42073905 rs12045563 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2190.000000,2818.000000, 0.437300,0.562700, maf-5-some-pop,maf-5-all-pops 906 chr1 42075266 42075267 rs12740722 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop 906 chr1 42076606 42076607 rs17363834 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3015.000000,1993.000000, 0.602037,0.397963, maf-5-some-pop,maf-5-all-pops 906 chr1 42076914 42076915 rs7515066 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop 906 chr1 42079866 42079867 rs4083497 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 435.000000,4573.000000,4573.000000,435.000000, 0.043431,0.456569,0.456569,0.043431, maf-5-some-pop,genotype-conflict 906 chr1 42082451 42082452 rs2148635 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2056.000000,2952.000000,2952.000000,2056.000000, 0.205272,0.294728,0.294728,0.205272, maf-5-some-pop,maf-5-all-pops 906 chr1 42083368 42083369 rs7519983 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2334.000000,2674.000000, 0.466054,0.533946, maf-5-some-pop,maf-5-all-pops 906 chr1 42083775 42083776 rs12404944 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 4139.000000,869.000000, 0.826478,0.173522, maf-5-some-pop 906 chr1 42085140 42085141 rs6600384 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops 906 chr1 42085436 42085437 rs16828495 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop 906 chr1 42085777 42085778 rs16828500 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop 906 chr1 42088101 42088102 rs4660549 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop 906 chr1 42088324 42088325 rs13375256 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 906 chr1 42088343 42088344 rs6658500 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2022.000000,2986.000000, 0.403754,0.596246, maf-5-some-pop,maf-5-all-pops,genotype-conflict 906 chr1 42089702 42089703 rs11210499 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2956.000000,2052.000000, 0.590256,0.409744, maf-5-some-pop,maf-5-all-pops 906 chr1 42089724 42089725 rs10890147 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop 906 chr1 42093711 42093712 rs11210502 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2036.000000,2972.000000, 0.406550,0.593450, maf-5-some-pop,maf-5-all-pops 906 chr1 42094658 42094659 rs2038977 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 3013.000000,1995.000000, 0.601637,0.398363, maf-5-some-pop,maf-5-all-pops 906 chr1 42095498 42095499 rs12562828 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 C,G, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop 906 chr1 42102876 42102877 rs11807949 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3512.000000,1496.000000, 0.701278,0.298722, maf-5-some-pop,maf-5-all-pops 906 chr1 42105181 42105182 rs10789406 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops,genotype-conflict 906 chr1 42108998 42108999 rs13375074 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,maf-5-all-pops 906 chr1 42109310 42109311 rs11210509 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2616.000000,2392.000000, 0.522364,0.477636, maf-5-some-pop,maf-5-all-pops 906 chr1 42111493 42111494 rs12089144 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 906 chr1 42114056 42114057 rs12075175 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 906 chr1 42114197 42114198 rs1123483 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1175.000000,3833.000000,3833.000000,1175.000000, 0.117312,0.382688,0.382688,0.117312, maf-5-some-pop 906 chr1 42117370 42117371 rs6701758 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop,genotype-conflict 906 chr1 42119843 42119844 rs2148636 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3095.000000,1913.000000, 0.618011,0.381989, maf-5-some-pop 906 chr1 42131622 42131623 rs4660198 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop,maf-5-all-pops 906 chr1 42133852 42133853 rs943372 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1472.000000,3536.000000, 0.293930,0.706070, maf-5-some-pop 906 chr1 42139392 42139393 rs17372813 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4503.000000,505.000000, 0.899161,0.100839, maf-5-some-pop,genotype-conflict 906 chr1 42142388 42142389 rs6700172 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,genotype-conflict 906 chr1 42142472 42142473 rs16828535 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 906 chr1 42143092 42143093 rs7548872 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop 906 chr1 42144763 42144764 rs1105414 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 555.000000,4453.000000,4453.000000,555.000000, 0.055411,0.444589,0.444589,0.055411, maf-5-some-pop 906 chr1 42144905 42144906 rs1105413 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4645.000000,363.000000,363.000000,4645.000000, 0.463758,0.036242,0.036242,0.463758, maf-5-some-pop 906 chr1 42145994 42145995 rs12093775 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop 906 chr1 42146294 42146295 rs731862 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop 906 chr1 42162251 42162252 rs12069663 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop 906 chr1 42164226 42164227 rs710246 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 318.000000,4690.000000,4690.000000,318.000000, 0.031749,0.468251,0.468251,0.031749, maf-5-some-pop 906 chr1 42165130 42165131 rs12066191 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop 906 chr1 42172772 42172773 rs12077598 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,T, 775.000000,4233.000000, 0.154752,0.845248, maf-5-some-pop 906 chr1 42174629 42174630 rs12086915 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4333.000000,675.000000, 0.865216,0.134784, maf-5-some-pop,genotype-conflict 906 chr1 42178083 42178084 rs2036961 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 313.000000,4695.000000,4695.000000,313.000000, 0.031250,0.468750,0.468750,0.031250, maf-5-some-pop,genotype-conflict 906 chr1 42179396 42179397 rs12409946 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop 906 chr1 42180081 42180082 rs2077354 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1165.000000,3843.000000, 0.232628,0.767372, maf-5-some-pop,genotype-conflict 906 chr1 42182007 42182008 rs6703365 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop 906 chr1 42182143 42182144 rs4526604 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1197.000000,3811.000000, 0.239018,0.760982, maf-5-some-pop 906 chr1 42187204 42187205 rs10493099 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4396.000000,612.000000,612.000000,4396.000000, 0.438898,0.061102,0.061102,0.438898, maf-5-some-pop,microattr-tpa 906 chr1 42187665 42187666 rs12569306 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop 906 chr1 42189455 42189456 rs6600388 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3829.000000,1179.000000, 0.764577,0.235423, maf-5-some-pop 906 chr1 42191529 42191530 rs6668076 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop 906 chr1 42192359 42192360 rs12088923 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop,genotype-conflict 906 chr1 42193289 42193290 rs7518062 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 906 chr1 42196290 42196291 rs11806365 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 906 chr1 42198080 42198081 rs11210517 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,genotype-conflict 906 chr1 42200756 42200757 rs12088019 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 906 chr1 42200922 42200923 rs710238 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1922.000000,3086.000000,3086.000000,1922.000000, 0.191893,0.308107,0.308107,0.191893, maf-5-some-pop,maf-5-all-pops 906 chr1 42201942 42201943 rs6667709 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3296.000000,1712.000000, 0.658147,0.341853, maf-5-some-pop 906 chr1 42202713 42202714 rs710235 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3633.000000,1375.000000,1375.000000,3633.000000, 0.362720,0.137280,0.137280,0.362720, maf-5-some-pop 906 chr1 42202856 42202857 rs710234 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 973.000000,4035.000000,4035.000000,973.000000, 0.097145,0.402855,0.402855,0.097145, maf-5-some-pop 907 chr1 42206472 42206473 rs2668939 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4162.000000,846.000000, 0.831070,0.168930, maf-5-some-pop 907 chr1 42207653 42207654 rs982142 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1926.000000,3082.000000,3082.000000,1926.000000, 0.192292,0.307708,0.307708,0.192292, maf-5-some-pop,maf-5-all-pops 907 chr1 42207718 42207719 rs16828605 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 G,T, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop 907 chr1 42208515 42208516 rs782657 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 925.000000,4083.000000,4083.000000,925.000000, 0.092352,0.407648,0.407648,0.092352, maf-5-some-pop 907 chr1 42212007 42212008 rs1371805 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop,maf-5-all-pops 907 chr1 42213075 42213076 rs4284254 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3602.000000,1406.000000, 0.719249,0.280751, maf-5-some-pop 907 chr1 42223908 42223909 rs12126740 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop,genotype-conflict 907 chr1 42226801 42226802 rs4660204 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4060.000000,948.000000, 0.810703,0.189297, maf-5-some-pop 907 chr1 42227531 42227532 rs11210522 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop 907 chr1 42228018 42228019 rs2165303 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1032.000000,3976.000000,3976.000000,1032.000000, 0.103035,0.396965,0.396965,0.103035, maf-5-some-pop 907 chr1 42230386 42230387 rs11210523 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1929.000000,3079.000000, 0.385184,0.614816, maf-5-some-pop,maf-5-all-pops 907 chr1 42230684 42230685 rs871343 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3080.000000,1928.000000, 0.615016,0.384984, maf-5-some-pop,maf-5-all-pops 907 chr1 42236411 42236412 rs4660577 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1961.000000,3047.000000, 0.391573,0.608427, maf-5-some-pop,maf-5-all-pops 907 chr1 42236827 42236828 rs7535437 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4048.000000,960.000000, 0.808307,0.191693, maf-5-some-pop 907 chr1 42237292 42237293 rs2013105 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1979.000000,3029.000000,3029.000000,1979.000000, 0.197584,0.302416,0.302416,0.197584, maf-5-some-pop,maf-5-all-pops 907 chr1 42239716 42239717 rs765040 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3302.000000,1706.000000,1706.000000,3302.000000, 0.329673,0.170327,0.170327,0.329673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 907 chr1 42242158 42242159 rs349430 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 972.000000,4036.000000,4036.000000,972.000000, 0.097045,0.402955,0.402955,0.097045, maf-5-some-pop,genotype-conflict 907 chr1 42243548 42243549 rs393950 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1824.000000,3184.000000,3184.000000,1824.000000, 0.182109,0.317891,0.317891,0.182109, maf-5-some-pop,maf-5-all-pops 907 chr1 42246508 42246509 rs168384 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3655.000000,1353.000000,1353.000000,3655.000000, 0.364916,0.135084,0.135084,0.364916, maf-5-some-pop 907 chr1 42247714 42247715 rs402379 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1656.000000,3352.000000,3352.000000,1656.000000, 0.165335,0.334665,0.334665,0.165335, maf-5-some-pop,maf-5-all-pops,genotype-conflict 907 chr1 42247727 42247728 rs11210526 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop 907 chr1 42250455 42250456 rs7517484 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop,genotype-conflict 907 chr1 42251917 42251918 rs12137296 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 346.000000,4662.000000, 0.069090,0.930911, maf-5-some-pop 907 chr1 42252357 42252358 rs239340 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2915.000000,2093.000000,2093.000000,2915.000000, 0.291034,0.208966,0.208966,0.291034, maf-5-some-pop,maf-5-all-pops 907 chr1 42255086 42255087 rs349433 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 907 chr1 42255220 42255221 rs239341 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2920.000000,2088.000000, 0.583067,0.416933, maf-5-some-pop 907 chr1 42259007 42259008 rs349439 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop 907 chr1 42259132 42259133 rs17373758 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop,genotype-conflict 907 chr1 42260685 42260686 rs349441 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3969.000000,1039.000000, 0.792532,0.207468, maf-5-some-pop,genotype-conflict 907 chr1 42261076 42261077 rs1073926 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 649.000000,4359.000000,4359.000000,649.000000, 0.064796,0.435204,0.435204,0.064796, maf-5-some-pop,genotype-conflict 907 chr1 42261888 42261889 rs10493098 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 3713.000000,1295.000000,1295.000000,3713.000000, 0.370707,0.129293,0.129293,0.370707, maf-5-some-pop 907 chr1 42262137 42262138 rs10493097 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 560.000000,4448.000000,4448.000000,560.000000, 0.055911,0.444089,0.444089,0.055911, maf-5-some-pop 907 chr1 42262743 42262744 rs17373807 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 941.000000,4067.000000, 0.187899,0.812101, maf-5-some-pop 907 chr1 42265702 42265703 rs349451 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop,genotype-conflict 907 chr1 42266976 42266977 rs349453 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 G,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop 907 chr1 42268978 42268979 rs16828715 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,genotype-conflict 907 chr1 42269457 42269458 rs349454 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop,genotype-conflict 907 chr1 42270665 42270666 rs16828722 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4366.000000,642.000000, 0.871805,0.128195, maf-5-some-pop,genotype-conflict 907 chr1 42271254 42271255 rs7536657 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop 907 chr1 42272541 42272542 rs6661568 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop,maf-5-all-pops 907 chr1 42272923 42272924 rs349447 0 - G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 907 chr1 42273445 42273446 rs349446 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KWOK,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4996.000000,12.000000,12.000000,4996.000000, 0.498802,0.001198,0.001198,0.498802, 907 chr1 42273652 42273653 rs12563071 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4107.000000,901.000000, 0.820088,0.179912, maf-5-some-pop,genotype-conflict 907 chr1 42274948 42274949 rs12066085 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop 907 chr1 42275133 42275134 rs606850 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2280.000000,2728.000000,2728.000000,2280.000000, 0.227636,0.272364,0.272364,0.227636, maf-5-some-pop,maf-5-all-pops 907 chr1 42279289 42279290 rs589010 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 907 chr1 42281301 42281302 rs401869 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1013.000000,3995.000000,3995.000000,1013.000000, 0.101138,0.398862,0.398862,0.101138, maf-5-some-pop 907 chr1 42285998 42285999 rs2492603 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 866.000000,4142.000000,4142.000000,866.000000, 0.086462,0.413538,0.413538,0.086462, maf-5-some-pop 907 chr1 42290849 42290850 rs438876 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop 907 chr1 42294805 42294806 rs349422 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 932.000000,4076.000000,4076.000000,932.000000, 0.093051,0.406949,0.406949,0.093051, maf-5-some-pop 907 chr1 42295454 42295455 rs496684 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 699.000000,4309.000000,4309.000000,699.000000, 0.069788,0.430212,0.430212,0.069788, maf-5-some-pop 907 chr1 42297603 42297604 rs972352 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 2 A,C, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop,genotype-conflict 907 chr1 42299639 42299640 rs41434744 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop 907 chr1 42299908 42299909 rs2786484 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop 907 chr1 42301300 42301301 rs681511 0 + G G C/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,G, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop 907 chr1 42301594 42301595 rs16828739 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4212.000000,796.000000, 0.841054,0.158946, maf-5-some-pop 907 chr1 42305856 42305857 rs11210533 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1355.000000,3653.000000, 0.270567,0.729433, maf-5-some-pop,maf-5-all-pops 907 chr1 42307193 42307194 rs509851 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2896.000000,2112.000000,2112.000000,2896.000000, 0.289137,0.210863,0.210863,0.289137, maf-5-some-pop,maf-5-all-pops 907 chr1 42310164 42310165 rs661225 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2639.000000,2369.000000, 0.526957,0.473043, maf-5-some-pop,maf-5-all-pops,genotype-conflict 907 chr1 42310281 42310282 rs661662 0 + T T G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2131.000000,2877.000000, 0.425519,0.574481, maf-5-some-pop,maf-5-all-pops 907 chr1 42314755 42314756 rs17365632 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3643.000000,1365.000000, 0.727436,0.272564, maf-5-some-pop 907 chr1 42317818 42317819 rs633520 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop,maf-5-all-pops 907 chr1 42318676 42318677 rs531299 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1165.000000,3843.000000,3843.000000,1165.000000, 0.116314,0.383686,0.383686,0.116314, maf-5-some-pop 907 chr1 42318867 42318868 rs1866758 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop,maf-5-all-pops 907 chr1 42321294 42321295 rs783313 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 A,C, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,genotype-conflict 907 chr1 42322051 42322052 rs997385 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 G,T, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop,genotype-conflict 907 chr1 42323152 42323153 rs7540176 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4376.000000,632.000000, 0.873802,0.126198, maf-5-some-pop 907 chr1 42323485 42323486 rs538599 0 - G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 907 chr1 42325121 42325122 rs10493096 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 897.000000,4111.000000,4111.000000,897.000000, 0.089557,0.410443,0.410443,0.089557, maf-5-some-pop,genotype-conflict 907 chr1 42326840 42326841 rs685989 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2466.000000,2542.000000, 0.492412,0.507588, maf-5-some-pop,maf-5-all-pops 907 chr1 42329119 42329120 rs525382 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 604.000000,4404.000000,4404.000000,604.000000, 0.060304,0.439696,0.439696,0.060304, maf-5-some-pop,genotype-conflict 907 chr1 42329302 42329303 rs609572 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop,genotype-conflict 907 chr1 42330584 42330585 rs12734651 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1742.000000,3266.000000, 0.347843,0.652157, maf-5-some-pop,maf-5-all-pops 907 chr1 42331629 42331630 rs7535166 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop 908 chr1 42338723 42338724 rs783424 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4048.000000,960.000000,960.000000,4048.000000, 0.404153,0.095847,0.095847,0.404153, maf-5-some-pop 908 chr1 42340157 42340158 rs945814 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 954.000000,4054.000000,4054.000000,954.000000, 0.095248,0.404752,0.404752,0.095248, maf-5-some-pop,genotype-conflict 908 chr1 42345367 42345368 rs796724 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1815.000000,3193.000000, 0.362420,0.637580, maf-5-some-pop,maf-5-all-pops 908 chr1 42345722 42345723 rs11210537 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 908 chr1 42346388 42346389 rs783630 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop 908 chr1 42350836 42350837 rs2993120 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2841.000000,2167.000000, 0.567292,0.432708, maf-5-some-pop,maf-5-all-pops 908 chr1 42353694 42353695 rs11210539 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2873.000000,2135.000000, 0.573682,0.426318, maf-5-some-pop,maf-5-all-pops 908 chr1 42354110 42354111 rs2993123 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1847.000000,3161.000000, 0.368810,0.631190, maf-5-some-pop,maf-5-all-pops 908 chr1 42354232 42354233 rs12759780 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop,maf-5-all-pops 908 chr1 42355481 42355482 rs7523641 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3672.000000,1336.000000, 0.733227,0.266773, maf-5-some-pop,maf-5-all-pops 908 chr1 42355639 42355640 rs12073820 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop 908 chr1 42356193 42356194 rs2764833 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 908 chr1 42356811 42356812 rs12059980 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,C, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop 908 chr1 42360712 42360713 rs811461 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1118.000000,3890.000000, 0.223243,0.776757, maf-5-some-pop,maf-5-all-pops 908 chr1 42363380 42363381 rs809173 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 908 chr1 42364176 42364177 rs1830908 0 - T T A/G genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4737.000000,271.000000,271.000000,4737.000000, 0.472943,0.027057,0.027057,0.472943, maf-5-some-pop,maf-5-all-pops 908 chr1 42365325 42365326 rs783626 0 - T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 908 chr1 42365964 42365965 rs12066717 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 198.000000,4810.000000, 0.039537,0.960463, maf-5-some-pop 908 chr1 42366128 42366129 rs12407004 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop 908 chr1 42366987 42366988 rs783622 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2475.000000,2533.000000,2533.000000,2475.000000, 0.247105,0.252895,0.252895,0.247105, maf-5-some-pop,maf-5-all-pops 908 chr1 42367642 42367643 rs7523265 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 908 chr1 42368338 42368339 rs2786487 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 908 chr1 42370146 42370147 rs2786486 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1220.000000,3788.000000,3788.000000,1220.000000, 0.121805,0.378195,0.378195,0.121805, maf-5-some-pop,maf-5-all-pops 908 chr1 42371413 42371414 rs2147904 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2640.000000,2368.000000,2368.000000,2640.000000, 0.263578,0.236422,0.236422,0.263578, maf-5-some-pop,maf-5-all-pops 908 chr1 42371446 42371447 rs6600391 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop,genotype-conflict 908 chr1 42373899 42373900 rs702225 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 728.000000,4280.000000,4280.000000,728.000000, 0.072684,0.427316,0.427316,0.072684, maf-5-some-pop 908 chr1 42378783 42378784 rs2786485 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 938.000000,4070.000000,4070.000000,938.000000, 0.093650,0.406350,0.406350,0.093650, maf-5-some-pop,maf-5-all-pops 908 chr1 42379052 42379053 rs732387 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2597.000000,2411.000000,2411.000000,2597.000000, 0.259285,0.240715,0.240715,0.259285, maf-5-some-pop 908 chr1 42382578 42382579 rs3795721 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4066.000000,942.000000, 0.811901,0.188099, maf-5-some-pop,maf-5-all-pops 908 chr1 42386289 42386290 rs12094473 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop 908 chr1 42399965 42399966 rs41513349 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4614.000000,394.000000,394.000000,4614.000000, 0.460663,0.039337,0.039337,0.460663, maf-5-some-pop 908 chr1 42405750 42405751 rs1408951 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 908 chr1 42406343 42406344 rs12564094 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop 908 chr1 42408158 42408159 rs7523668 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2643.000000,2365.000000, 0.527756,0.472244, maf-5-some-pop,maf-5-all-pops 908 chr1 42410099 42410100 rs11578953 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2279.000000,2729.000000, 0.455072,0.544928, maf-5-some-pop,maf-5-all-pops 908 chr1 42417705 42417706 rs1408948 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 764.000000,4244.000000,4244.000000,764.000000, 0.076278,0.423722,0.423722,0.076278, maf-5-some-pop,genotype-conflict 908 chr1 42421993 42421994 rs583077 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2664.000000,2344.000000,2344.000000,2664.000000, 0.265974,0.234026,0.234026,0.265974, maf-5-some-pop,maf-5-all-pops 908 chr1 42422756 42422757 rs660883 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2345.000000,2663.000000,2663.000000,2345.000000, 0.234125,0.265875,0.265875,0.234125, maf-5-some-pop,maf-5-all-pops,genotype-conflict 908 chr1 42423683 42423684 rs11210556 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop 908 chr1 42424712 42424713 rs6677053 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop,genotype-conflict 908 chr1 42426442 42426443 rs603288 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4711.000000,297.000000,297.000000,4711.000000, 0.470347,0.029653,0.029653,0.470347, maf-5-some-pop 908 chr1 42436053 42436054 rs6686901 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2157.000000,2851.000000, 0.430711,0.569289, maf-5-some-pop,maf-5-all-pops 908 chr1 42438195 42438196 rs591088 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2098.000000,2910.000000, 0.418930,0.581070, maf-5-some-pop,maf-5-all-pops 908 chr1 42439409 42439410 rs16828938 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1175.000000,3833.000000, 0.234625,0.765375, maf-5-some-pop,maf-5-all-pops,genotype-conflict 908 chr1 42439757 42439758 rs12095882 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 908 chr1 42440757 42440758 rs3845573 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3778.000000,1230.000000,1230.000000,3778.000000, 0.377196,0.122804,0.122804,0.377196, maf-5-some-pop,maf-5-all-pops 908 chr1 42441287 42441288 rs4660590 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2685.000000,2323.000000, 0.536142,0.463858, maf-5-some-pop,maf-5-all-pops 908 chr1 42443602 42443603 rs7523111 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 908 chr1 42450370 42450371 rs689277 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 853.000000,4155.000000,4155.000000,853.000000, 0.085164,0.414836,0.414836,0.085164, maf-5-some-pop,genotype-conflict 908 chr1 42453316 42453317 rs642112 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4216.000000,792.000000,792.000000,4216.000000, 0.420927,0.079073,0.079073,0.420927, maf-5-some-pop,genotype-conflict 908 chr1 42465727 42465728 rs189426 0 - C C C/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 909 chr1 42470273 42470274 rs238675 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4239.000000,769.000000,769.000000,4239.000000, 0.423223,0.076777,0.076777,0.423223, maf-5-some-pop 909 chr1 42470940 42470941 rs7553696 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop,genotype-conflict 909 chr1 42473256 42473257 rs12065834 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 909 chr1 42473396 42473397 rs3856258 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3802.000000,1206.000000, 0.759185,0.240815, maf-5-some-pop 909 chr1 42476315 42476316 rs4598479 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop,maf-5-all-pops 909 chr1 42483469 42483470 rs348137 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 318.000000,4690.000000,4690.000000,318.000000, 0.031749,0.468251,0.468251,0.031749, maf-5-some-pop 909 chr1 42487058 42487059 rs784103 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 832.000000,4176.000000,4176.000000,832.000000, 0.083067,0.416933,0.416933,0.083067, maf-5-some-pop,genotype-conflict 909 chr1 42489030 42489031 rs1024278 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2154.000000,2854.000000,2854.000000,2154.000000, 0.215056,0.284944,0.284944,0.215056, maf-5-some-pop,maf-5-all-pops 909 chr1 42492993 42492994 rs1421276 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1102.000000,3906.000000,3906.000000,1102.000000, 0.110024,0.389976,0.389976,0.110024, maf-5-some-pop,maf-5-all-pops,genotype-conflict 909 chr1 42496398 42496399 rs4660212 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1346.000000,3662.000000, 0.268770,0.731230, maf-5-some-pop 909 chr1 42498597 42498598 rs10890175 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2750.000000,2258.000000, 0.549121,0.450879, maf-5-some-pop,maf-5-all-pops 909 chr1 42499364 42499365 rs12042133 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3664.000000,1344.000000, 0.731629,0.268371, maf-5-some-pop,genotype-conflict 909 chr1 42500420 42500421 rs6696291 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1140.000000,3868.000000, 0.227636,0.772364, maf-5-some-pop 909 chr1 42503949 42503950 rs10890176 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,genotype-conflict 909 chr1 42505509 42505510 rs7550497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3866.000000,1142.000000, 0.771965,0.228035, maf-5-some-pop,genotype-conflict 909 chr1 42507236 42507237 rs784101 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 909 chr1 42508950 42508951 rs12143100 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3862.000000,1146.000000, 0.771166,0.228834, maf-5-some-pop,maf-5-all-pops 909 chr1 42510037 42510038 rs7528885 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 909 chr1 42515694 42515695 rs10437061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,genotype-conflict 909 chr1 42517166 42517167 rs953194 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 685.000000,4323.000000,4323.000000,685.000000, 0.068391,0.431609,0.431609,0.068391, maf-5-some-pop,genotype-conflict 909 chr1 42518308 42518309 rs1421275 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4769.000000,239.000000,239.000000,4769.000000, 0.476138,0.023862,0.023862,0.476138, maf-5-some-pop 909 chr1 42531545 42531546 rs6687333 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2526.000000,2482.000000, 0.504393,0.495607, maf-5-some-pop,maf-5-all-pops 909 chr1 42542657 42542658 rs11210577 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops 909 chr1 42568347 42568348 rs7545779 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2222.000000,2786.000000, 0.443690,0.556310, maf-5-some-pop,maf-5-all-pops,genotype-conflict 909 chr1 42568954 42568955 rs10789413 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2221.000000,2787.000000, 0.443490,0.556510, maf-5-some-pop,maf-5-all-pops 909 chr1 42570386 42570387 rs7521246 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2046.000000,2962.000000, 0.408546,0.591454, maf-5-some-pop 909 chr1 42570802 42570803 rs1016867 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops,genotype-conflict 909 chr1 42577443 42577444 rs6672120 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3107.000000,1901.000000, 0.620407,0.379593, maf-5-some-pop,maf-5-all-pops,genotype-conflict 909 chr1 42580502 42580503 rs11210588 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop,maf-5-all-pops 909 chr1 42590649 42590650 rs4660606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3804.000000,1204.000000, 0.759585,0.240415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 909 chr1 42591327 42591328 rs10789415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,maf-5-all-pops,genotype-conflict 909 chr1 42593667 42593668 rs17367664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,genotype-conflict 910 chr1 42598963 42598964 rs7542228 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop,genotype-conflict 910 chr1 42601213 42601214 rs7516178 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop 910 chr1 42605997 42605998 rs12068952 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 910 chr1 42608399 42608400 rs12119339 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1349.000000,3659.000000, 0.269369,0.730631, maf-5-some-pop,maf-5-all-pops 910 chr1 42613301 42613302 rs11210601 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1045.000000,3963.000000, 0.208666,0.791334, maf-5-some-pop,maf-5-all-pops 910 chr1 42613502 42613503 rs12079163 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop 910 chr1 42620153 42620154 rs885846 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3079.000000,1929.000000, 0.614816,0.385184, maf-5-some-pop 910 chr1 42621644 42621645 rs3818727 0 - G G C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1075.000000,3933.000000,3933.000000,1075.000000, 0.107328,0.392672,0.392672,0.107328, maf-5-some-pop,maf-5-all-pops 910 chr1 42623671 42623672 rs11210604 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP, 2 G,T, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop 910 chr1 42628885 42628886 rs12086819 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 910 chr1 42629039 42629040 rs2232224 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GENAISSANCE,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 416.000000,4592.000000,4592.000000,416.000000, 0.041534,0.458466,0.458466,0.041534, maf-5-some-pop 910 chr1 42629104 42629105 rs2232222 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,GENAISSANCE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP, 4 A,C,G,T, 40.000000,4968.000000,4968.000000,40.000000, 0.003994,0.496006,0.496006,0.003994, 910 chr1 42635358 42635359 rs7535438 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1694.000000,3314.000000, 0.338259,0.661741, maf-5-some-pop,maf-5-all-pops 910 chr1 42635504 42635505 rs12077500 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 736.000000,4272.000000, 0.146965,0.853035, maf-5-some-pop 910 chr1 42637612 42637613 rs495824 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4020.000000,988.000000,988.000000,4020.000000, 0.401358,0.098642,0.098642,0.401358, maf-5-some-pop 910 chr1 42644769 42644770 rs686247 0 - C C A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 4013.000000,995.000000,995.000000,4013.000000, 0.400659,0.099341,0.099341,0.400659, maf-5-some-pop,genotype-conflict 910 chr1 42658406 42658407 rs7529911 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 910 chr1 42673522 42673523 rs6665972 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,G, 701.000000,4307.000000, 0.139976,0.860024, maf-5-some-pop 910 chr1 42683283 42683284 rs693587 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops 910 chr1 42685234 42685235 rs592348 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3371.000000,1637.000000,1637.000000,3371.000000, 0.336562,0.163438,0.163438,0.336562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 910 chr1 42688965 42688966 rs624635 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 910 chr1 42695197 42695198 rs343377 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1443.000000,3565.000000,3565.000000,1443.000000, 0.144069,0.355931,0.355931,0.144069, maf-5-some-pop,maf-5-all-pops,genotype-conflict 910 chr1 42705046 42705047 rs343373 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3388.000000,1620.000000,1620.000000,3388.000000, 0.338259,0.161741,0.161741,0.338259, maf-5-some-pop,maf-5-all-pops,genotype-conflict 910 chr1 42706586 42706587 rs661773 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1307.000000,3701.000000, 0.260982,0.739018, maf-5-some-pop,maf-5-all-pops 910 chr1 42707629 42707630 rs343388 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2028.000000,2980.000000,2980.000000,2028.000000, 0.202476,0.297524,0.297524,0.202476, maf-5-some-pop,maf-5-all-pops 910 chr1 42720861 42720862 rs343400 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop,maf-5-all-pops 910 chr1 42724249 42724250 rs17377240 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4277.000000,731.000000, 0.854034,0.145966, maf-5-some-pop 911 chr1 42745974 42745975 rs7526659 0 + G G C/G genomic single unknown 0 0 intron,nonsense exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3407.000000,1601.000000, 0.680312,0.319688, maf-5-some-pop,maf-5-all-pops 911 chr1 42764187 42764188 rs11210617 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3253.000000,1755.000000, 0.649561,0.350439, maf-5-some-pop 911 chr1 42779087 42779088 rs11210621 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop,maf-5-all-pops 911 chr1 42780260 42780261 rs2479462 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1611.000000,3397.000000, 0.321685,0.678315, maf-5-some-pop,maf-5-all-pops 911 chr1 42797764 42797765 rs1566584 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 369.000000,4639.000000, 0.073682,0.926318, maf-5-some-pop 911 chr1 42798203 42798204 rs2494366 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1188.000000,3820.000000,3820.000000,1188.000000, 0.118610,0.381390,0.381390,0.118610, maf-5-some-pop,microattr-tpa 911 chr1 42798310 42798311 rs17369151 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop 911 chr1 42806190 42806191 rs913426 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2597.000000,2411.000000,2411.000000,2597.000000, 0.259285,0.240715,0.240715,0.259285, maf-5-some-pop,maf-5-all-pops 911 chr1 42822088 42822089 rs11210622 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 725.000000,4283.000000, 0.144768,0.855232, maf-5-some-pop,genotype-conflict 911 chr1 42823075 42823076 rs12069851 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 911 chr1 42823365 42823366 rs2494356 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2062.000000,2946.000000,2946.000000,2062.000000, 0.205871,0.294129,0.294129,0.205871, maf-5-some-pop,maf-5-all-pops 911 chr1 42823767 42823768 rs1536651 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1506.000000,3502.000000,3502.000000,1506.000000, 0.150359,0.349641,0.349641,0.150359, maf-5-some-pop 911 chr1 42824316 42824317 rs17377828 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 4581.000000,427.000000, 0.914736,0.085264, maf-5-some-pop,genotype-conflict 911 chr1 42826153 42826154 rs2479460 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 911 chr1 42826346 42826347 rs17377863 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4580.000000,428.000000, 0.914537,0.085463, maf-5-some-pop 911 chr1 42828755 42828756 rs12071791 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 911 chr1 42835036 42835037 rs2479457 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 77.000000,4931.000000,4931.000000,77.000000, 0.007688,0.492312,0.492312,0.007688, maf-5-some-pop 911 chr1 42835395 42835396 rs6679533 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2587.000000,2421.000000, 0.516573,0.483427, maf-5-some-pop,maf-5-all-pops 911 chr1 42835785 42835786 rs11587576 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop 911 chr1 42856728 42856729 rs12408746 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 4246.000000,762.000000, 0.847843,0.152157, maf-5-some-pop,maf-5-all-pops 911 chr1 42860216 42860217 rs17369630 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4137.000000,871.000000, 0.826078,0.173922, maf-5-some-pop,maf-5-all-pops 912 chr1 42861949 42861950 rs6684354 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3468.000000,1540.000000, 0.692492,0.307508, maf-5-some-pop 912 chr1 42862408 42862409 rs17369712 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop,maf-5-all-pops,genotype-conflict 912 chr1 42866079 42866080 rs12098213 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 912 chr1 42866125 42866126 rs12568497 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4119.000000,889.000000, 0.822484,0.177516, maf-5-some-pop,maf-5-all-pops 912 chr1 42877915 42877916 rs871645 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 912 chr1 42879736 42879737 rs9803864 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1563.000000,3445.000000, 0.312101,0.687899, maf-5-some-pop 912 chr1 42880515 42880516 rs1055055 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 29 1000GENOMES,ABI,AFFY,APPLERA_GI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2451.000000,2557.000000, 0.489417,0.510583, maf-5-some-pop,maf-5-all-pops 912 chr1 42881679 42881680 rs12403920 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop,maf-5-all-pops 912 chr1 42882295 42882296 rs4660632 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 517.000000,4491.000000, 0.103235,0.896765, maf-5-some-pop 912 chr1 42883150 42883151 rs11210640 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4267.000000,741.000000, 0.852037,0.147963, maf-5-some-pop 912 chr1 42883243 42883244 rs16829465 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 912 chr1 42884190 42884191 rs16829470 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1892.000000,3116.000000, 0.377796,0.622204, maf-5-some-pop,maf-5-all-pops,genotype-conflict 912 chr1 42885522 42885523 rs16829473 0 + C C A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,T, 23.000000,4376.000000,609.000000, 0.004593,0.873802,0.121605, maf-5-some-pop,genotype-conflict 912 chr1 42886184 42886185 rs10493109 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1758.000000,3250.000000,3250.000000,1758.000000, 0.175519,0.324481,0.324481,0.175519, maf-5-some-pop,maf-5-all-pops,genotype-conflict 912 chr1 42889223 42889224 rs1110071 0 - C C C/G genomic single unknown 0 0 untranslated-3 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 912 chr1 42893163 42893164 rs11210643 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 837.000000,4171.000000, 0.167133,0.832867, maf-5-some-pop,maf-5-all-pops,genotype-conflict 912 chr1 42896618 42896619 rs11803844 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 912 chr1 42898207 42898208 rs10399812 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop,maf-5-all-pops 912 chr1 42898632 42898633 rs1011810 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 1756.000000,3252.000000, 0.350639,0.649361, maf-5-some-pop,maf-5-all-pops 912 chr1 42898670 42898671 rs2494376 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop 912 chr1 42898842 42898843 rs1034268 0 + A A A/G genomic single unknown 0 0 missense exact 1 28 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 1756.000000,3252.000000, 0.350639,0.649361, maf-5-some-pop,maf-5-all-pops 912 chr1 42899892 42899893 rs17378839 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 912 chr1 42901081 42901082 rs3748845 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop,maf-5-all-pops 912 chr1 42901172 42901173 rs4660634 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4137.000000,871.000000, 0.826078,0.173922, maf-5-some-pop,maf-5-all-pops 912 chr1 42902562 42902563 rs12035020 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop 912 chr1 42902905 42902906 rs10890197 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,genotype-conflict 912 chr1 42907710 42907711 rs16829526 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4235.000000,773.000000, 0.845647,0.154353, maf-5-some-pop 912 chr1 42908014 42908015 rs2809664 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop 912 chr1 42908045 42908046 rs2809665 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop 912 chr1 42908101 42908102 rs10493108 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4088.000000,920.000000,920.000000,4088.000000, 0.408147,0.091853,0.091853,0.408147, maf-5-some-pop,maf-5-all-pops,genotype-conflict 912 chr1 42908218 42908219 rs10437062 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2663.000000,2345.000000, 0.531749,0.468251, maf-5-some-pop,maf-5-all-pops 912 chr1 42909341 42909342 rs10493107 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 716.000000,4292.000000,4292.000000,716.000000, 0.071486,0.428514,0.428514,0.071486, maf-5-some-pop 912 chr1 42909542 42909543 rs12131762 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 803.000000,4205.000000, 0.160343,0.839657, maf-5-some-pop 912 chr1 42915763 42915764 rs16829544 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 912 chr1 42928729 42928730 rs12047502 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1390.000000,3618.000000, 0.277556,0.722444, maf-5-some-pop,maf-5-all-pops 912 chr1 42940152 42940153 rs2809662 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 912 chr1 42944069 42944070 rs12145294 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 4308.000000,700.000000, 0.860224,0.139776, maf-5-some-pop 912 chr1 42945689 42945690 rs12402795 0 + G G A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 3 A,C,G, 629.000000,33.000000,4346.000000, 0.125599,0.006589,0.867812, maf-5-some-pop,maf-5-all-pops 912 chr1 42945713 42945714 rs11210651 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1395.000000,3613.000000, 0.278554,0.721446, maf-5-some-pop,maf-5-all-pops,genotype-conflict 912 chr1 42950207 42950208 rs1335578 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 3257.000000,1751.000000,1751.000000,3257.000000, 0.325180,0.174820,0.174820,0.325180, maf-5-some-pop,maf-5-all-pops 912 chr1 42959295 42959296 rs12405571 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2321.000000,2687.000000, 0.463458,0.536542, maf-5-some-pop,maf-5-all-pops 912 chr1 42962220 42962221 rs6698350 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 3349.000000,1659.000000, 0.668730,0.331270, maf-5-some-pop,maf-5-all-pops 912 chr1 42963501 42963502 rs6686662 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 1651.000000,3357.000000, 0.329673,0.670327, maf-5-some-pop,maf-5-all-pops 912 chr1 42978241 42978242 rs4622104 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4364.000000,644.000000, 0.871406,0.128594, maf-5-some-pop,maf-5-all-pops 912 chr1 42983412 42983413 rs4607934 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,maf-5-all-pops,genotype-conflict 913 chr1 42999786 42999787 rs10890200 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2323.000000,2685.000000, 0.463858,0.536142, maf-5-some-pop,maf-5-all-pops 913 chr1 43008017 43008018 rs7411957 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 913 chr1 43009318 43009319 rs16829623 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 913 chr1 43020693 43020694 rs16829690 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 913 chr1 43034104 43034105 rs12033025 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 646.000000,4362.000000, 0.128994,0.871006, maf-5-some-pop 913 chr1 43034141 43034142 rs16829714 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 589.000000,4419.000000, 0.117612,0.882388, maf-5-some-pop 913 chr1 43042124 43042125 rs2762697 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1489.000000,3519.000000, 0.297324,0.702676, maf-5-some-pop,maf-5-all-pops 913 chr1 43045995 43045996 rs11807544 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 913 chr1 43049902 43049903 rs2809656 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3204.000000,1804.000000, 0.639776,0.360224, maf-5-some-pop,maf-5-all-pops 913 chr1 43050395 43050396 rs2809658 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops 913 chr1 43050818 43050819 rs11210675 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop,maf-5-all-pops 913 chr1 43051743 43051744 rs12045479 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1410.000000,3598.000000, 0.281550,0.718450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 913 chr1 43051831 43051832 rs16829778 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop,genotype-conflict 913 chr1 43052185 43052186 rs1324336 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3211.000000,1797.000000, 0.641174,0.358826, maf-5-some-pop,maf-5-all-pops 913 chr1 43052470 43052471 rs12408987 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop,genotype-conflict 913 chr1 43052855 43052856 rs2762693 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops,genotype-conflict 913 chr1 43053366 43053367 rs2762694 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop 913 chr1 43054258 43054259 rs1359292 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,T, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 913 chr1 43055242 43055243 rs10789417 0 + C C A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 3 A,C,G, 43.000000,1634.000000,3331.000000, 0.008586,0.326278,0.665136, maf-5-some-pop,maf-5-all-pops 913 chr1 43073463 43073464 rs12024669 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3302.000000,1706.000000, 0.659345,0.340655, maf-5-some-pop,maf-5-all-pops 913 chr1 43073503 43073504 rs12025456 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1687.000000,3321.000000, 0.336861,0.663139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 913 chr1 43076653 43076654 rs16829795 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,TISHKOFF, 2 C,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 913 chr1 43082524 43082525 rs16829797 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop 913 chr1 43085441 43085442 rs6673319 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 913 chr1 43102110 43102111 rs12129168 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 665.000000,4343.000000, 0.132788,0.867212, maf-5-some-pop 913 chr1 43102791 43102792 rs16829820 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1115.000000,3893.000000, 0.222644,0.777356, maf-5-some-pop,maf-5-all-pops 913 chr1 43102843 43102844 rs16829822 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop,genotype-conflict 913 chr1 43104951 43104952 rs1951918 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1119.000000,3889.000000, 0.223442,0.776558, maf-5-some-pop,maf-5-all-pops 913 chr1 43108187 43108188 rs12036818 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 725.000000,4283.000000, 0.144768,0.855232, maf-5-some-pop 913 chr1 43111720 43111721 rs41432649 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,CLINSEQ_SNP,JMKIDD_LAB,TISHKOFF, 2 A,G, 4979.000000,29.000000, 0.994209,0.005791, maf-5-some-pop 913 chr1 43120820 43120821 rs16829834 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,genotype-conflict 914 chr1 43123265 43123266 rs1324335 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 914 chr1 43126732 43126733 rs3768025 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 914 chr1 43129868 43129869 rs3768027 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop 914 chr1 43131652 43131653 rs12244 0 + G G A/C/G/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 SingleClassQuadAllelic,InconsistentAlleles 18 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,WI_SSAHASNP, 2 A,G, 753.000000,4255.000000, 0.150359,0.849641, maf-5-some-pop 914 chr1 43132612 43132613 rs12410860 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2225.000000,2783.000000, 0.444289,0.555711, maf-5-some-pop,maf-5-all-pops 914 chr1 43135437 43135438 rs12141653 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1848.000000,3160.000000, 0.369010,0.630990, maf-5-some-pop,maf-5-all-pops,genotype-conflict 914 chr1 43152609 43152610 rs3862218 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3714.000000,1294.000000, 0.741613,0.258387, maf-5-some-pop,genotype-conflict 914 chr1 43154200 43154201 rs12077305 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 914 chr1 43154491 43154492 rs3895305 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3709.000000,1299.000000, 0.740615,0.259385, maf-5-some-pop 914 chr1 43155061 43155062 rs11210696 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop 914 chr1 43158509 43158510 rs10493113 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop,genotype-conflict 914 chr1 43163545 43163546 rs12044179 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2757.000000,2251.000000, 0.550519,0.449481, maf-5-some-pop,maf-5-all-pops 914 chr1 43178306 43178307 rs11811635 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 914 chr1 43187066 43187067 rs7543061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 914 chr1 43208560 43208561 rs11590362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop 914 chr1 43209538 43209539 rs11210709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 914 chr1 43209565 43209566 rs10890213 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2777.000000,2231.000000, 0.554513,0.445487, maf-5-some-pop,maf-5-all-pops 914 chr1 43215177 43215178 rs16829937 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop 914 chr1 43223488 43223489 rs6700677 0 + C C C/T genomic single unknown 0 0 missense exact 1 19 1000GENOMES,AFFY,APPLERA_GI,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,DALGLEISH_LEICESTER,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,TISHKOFF, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, clinically-assoc,maf-5-some-pop,submitted-by-lsdb 915 chr1 43254107 43254108 rs719676 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3777.000000,1231.000000,1231.000000,3777.000000, 0.377097,0.122903,0.122903,0.377097, maf-5-some-pop 915 chr1 43262672 43262673 rs2760081 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,maf-5-all-pops,genotype-conflict 915 chr1 43262825 43262826 rs16829965 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,genotype-conflict 915 chr1 43267129 43267130 rs2816600 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop 915 chr1 43267969 43267970 rs2816602 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop 915 chr1 43267983 43267984 rs4660668 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3072.000000,1936.000000, 0.613419,0.386581, maf-5-some-pop,maf-5-all-pops 915 chr1 43271032 43271033 rs323720 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop 915 chr1 43273752 43273753 rs655741 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP, 4 A,C,G,T, 858.000000,4150.000000,4150.000000,858.000000, 0.085663,0.414337,0.414337,0.085663, maf-5-some-pop 915 chr1 43277311 43277312 rs323716 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1396.000000,3612.000000,3612.000000,1396.000000, 0.139377,0.360623,0.360623,0.139377, maf-5-some-pop,maf-5-all-pops 915 chr1 43281727 43281728 rs17381767 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,genotype-conflict 915 chr1 43292805 43292806 rs6658001 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1434.000000,3574.000000, 0.286342,0.713658, maf-5-some-pop,maf-5-all-pops 915 chr1 43299120 43299121 rs11210726 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1692.000000,3316.000000, 0.337859,0.662141, maf-5-some-pop,maf-5-all-pops,genotype-conflict 915 chr1 43299535 43299536 rs7540312 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 C,T, 1381.000000,3627.000000, 0.275759,0.724241, maf-5-some-pop,maf-5-all-pops 915 chr1 43299834 43299835 rs7540604 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3307.000000,1701.000000, 0.660343,0.339657, maf-5-some-pop,maf-5-all-pops 915 chr1 43300662 43300663 rs4660672 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PGA-UW-FHCRC,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2917.000000,2091.000000, 0.582468,0.417532, maf-5-some-pop,maf-5-all-pops 915 chr1 43300920 43300921 rs4660673 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1264.000000,3744.000000, 0.252396,0.747604, maf-5-some-pop,maf-5-all-pops,genotype-conflict 915 chr1 43306127 43306128 rs11210729 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,SC_SNP,SSMP,TISHKOFF, 2 A,G, 930.000000,4078.000000, 0.185703,0.814297, maf-5-some-pop,genotype-conflict 915 chr1 43307631 43307632 rs12078281 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1339.000000,3669.000000, 0.267372,0.732628, maf-5-some-pop,maf-5-all-pops 915 chr1 43309366 43309367 rs11809718 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 915 chr1 43309547 43309548 rs1484324 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop 915 chr1 43312996 43312997 rs11210732 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,G, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop 915 chr1 43316263 43316264 rs16830020 0 + A A A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 915 chr1 43317792 43317793 rs9960 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop,maf-5-all-pops 915 chr1 43319271 43319272 rs4660234 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop,genotype-conflict 915 chr1 43325884 43325885 rs12136076 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3441.000000,1567.000000, 0.687101,0.312899, maf-5-some-pop,maf-5-all-pops 915 chr1 43342565 43342566 rs1601241 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1455.000000,3553.000000, 0.290535,0.709465, maf-5-some-pop,maf-5-all-pops 915 chr1 43350602 43350603 rs11210747 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3516.000000,1492.000000, 0.702077,0.297923, maf-5-some-pop,maf-5-all-pops 915 chr1 43351709 43351710 rs4660680 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 915 chr1 43353133 43353134 rs6674019 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3252.000000,1756.000000, 0.649361,0.350639, maf-5-some-pop,maf-5-all-pops 915 chr1 43356210 43356211 rs17382631 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,C, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 915 chr1 43357368 43357369 rs12070405 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop 915 chr1 43357599 43357600 rs1681855 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1561.000000,3447.000000,3447.000000,1561.000000, 0.155851,0.344149,0.344149,0.155851, maf-5-some-pop,maf-5-all-pops 915 chr1 43357977 43357978 rs16830037 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop,maf-5-all-pops 915 chr1 43366502 43366503 rs16830039 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 690.000000,4318.000000, 0.137780,0.862220, maf-5-some-pop,genotype-conflict 915 chr1 43366890 43366891 rs841860 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1654.000000,3354.000000,3354.000000,1654.000000, 0.165136,0.334864,0.334864,0.165136, maf-5-some-pop,maf-5-all-pops 915 chr1 43367642 43367643 rs1484325 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1273.000000,3735.000000,3735.000000,1273.000000, 0.127097,0.372903,0.372903,0.127097, maf-5-some-pop,genotype-conflict 915 chr1 43367725 43367726 rs12564800 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 3252.000000,1756.000000, 0.649361,0.350639, maf-5-some-pop,maf-5-all-pops,genotype-conflict 915 chr1 43367754 43367755 rs12565663 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,CSHL-HAPMAP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 915 chr1 43367874 43367875 rs841859 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4241.000000,767.000000,767.000000,4241.000000, 0.423423,0.076577,0.076577,0.423423, maf-5-some-pop,maf-5-all-pops 915 chr1 43368149 43368150 rs11210751 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop,maf-5-all-pops 915 chr1 43369304 43369305 rs951060 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3792.000000,1216.000000, 0.757188,0.242812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 915 chr1 43369686 43369687 rs900840 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1736.000000,3272.000000,3272.000000,1736.000000, 0.173323,0.326677,0.326677,0.173323, maf-5-some-pop,maf-5-all-pops 915 chr1 43373329 43373330 rs7548325 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3100.000000,1908.000000, 0.619010,0.380990, maf-5-some-pop,maf-5-all-pops 915 chr1 43373530 43373531 rs6600429 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2450.000000,2558.000000, 0.489217,0.510783, maf-5-some-pop,maf-5-all-pops 915 chr1 43373841 43373842 rs12565855 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1763.000000,3245.000000, 0.352037,0.647963, maf-5-some-pop,maf-5-all-pops 915 chr1 43373881 43373882 rs1601242 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop,maf-5-all-pops 915 chr1 43374497 43374498 rs6699129 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3729.000000,1279.000000, 0.744609,0.255391, maf-5-some-pop 915 chr1 43380981 43380982 rs841837 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 601.000000,4407.000000,4407.000000,601.000000, 0.060004,0.439996,0.439996,0.060004, maf-5-some-pop,maf-5-all-pops 916 chr1 43387301 43387302 rs841844 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 916 chr1 43396413 43396414 rs11537641 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,CGAP-GAI,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 708.000000,4300.000000,4300.000000,708.000000, 0.070687,0.429313,0.429313,0.070687, maf-5-some-pop 916 chr1 43398084 43398085 rs3820546 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,YUSUKE, 2 A,G, 1519.000000,3489.000000, 0.303315,0.696685, maf-5-some-pop 916 chr1 43399166 43399167 rs841858 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 813.000000,4195.000000,4195.000000,813.000000, 0.081170,0.418830,0.418830,0.081170, maf-5-some-pop,maf-5-all-pops 916 chr1 43399685 43399686 rs3754219 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop 916 chr1 43401437 43401438 rs841853 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1672.000000,3336.000000,3336.000000,1672.000000, 0.166933,0.333067,0.333067,0.166933, maf-5-some-pop,maf-5-all-pops,genotype-conflict 916 chr1 43404712 43404713 rs841845 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3724.000000,1284.000000,1284.000000,3724.000000, 0.371805,0.128195,0.128195,0.371805, maf-5-some-pop,maf-5-all-pops 916 chr1 43406153 43406154 rs5031048 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SNP500CANCER,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 916 chr1 43408278 43408279 rs6657798 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3627.000000,1381.000000, 0.724241,0.275759, maf-5-some-pop,maf-5-all-pops 916 chr1 43408569 43408570 rs16830101 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 916 chr1 43409178 43409179 rs12718444 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,CGM_KYOTO,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4240.000000,768.000000, 0.846645,0.153355, maf-5-some-pop 916 chr1 43411595 43411596 rs1105297 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2795.000000,2213.000000,2213.000000,2795.000000, 0.279054,0.220946,0.220946,0.279054, maf-5-some-pop,maf-5-all-pops 916 chr1 43412454 43412455 rs900835 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4295.000000,713.000000, 0.857628,0.142372, maf-5-some-pop 916 chr1 43412468 43412469 rs16830121 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 916 chr1 43413652 43413653 rs710222 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2592.000000,2416.000000,2416.000000,2592.000000, 0.258786,0.241214,0.241214,0.258786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 916 chr1 43417780 43417781 rs12407920 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 916 chr1 43419090 43419091 rs3754223 0 + A A A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 1148.000000,3860.000000, 0.229233,0.770767, maf-5-some-pop,maf-5-all-pops 916 chr1 43419214 43419215 rs11808361 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop 916 chr1 43419704 43419705 rs17387886 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop 916 chr1 43419736 43419737 rs12406072 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop 916 chr1 43421523 43421524 rs3768045 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop 916 chr1 43426211 43426212 rs3806401 0 - A A G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3946.000000,1062.000000,1062.000000,3946.000000, 0.393970,0.106030,0.106030,0.393970, maf-5-some-pop,maf-5-all-pops 916 chr1 43426590 43426591 rs3738514 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3942.000000,1066.000000, 0.787141,0.212859, maf-5-some-pop,maf-5-all-pops 916 chr1 43427217 43427218 rs710218 0 - T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 916 chr1 43430083 43430084 rs841839 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2803.000000,2205.000000,2205.000000,2803.000000, 0.279852,0.220148,0.220148,0.279852, maf-5-some-pop,maf-5-all-pops 916 chr1 43431432 43431433 rs4306169 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2210.000000,2798.000000,2798.000000,2210.000000, 0.220647,0.279353,0.279353,0.220647, maf-5-some-pop,maf-5-all-pops 916 chr1 43432588 43432589 rs2367159 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2174.000000,2834.000000, 0.434105,0.565895, maf-5-some-pop,maf-5-all-pops,genotype-conflict 916 chr1 43435903 43435904 rs841571 0 - G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 916 chr1 43437797 43437798 rs7555774 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop 916 chr1 43438837 43438838 rs4660692 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 836.000000,4172.000000, 0.166933,0.833067, maf-5-some-pop,maf-5-all-pops 916 chr1 43439345 43439346 rs16830164 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3295.000000,1713.000000, 0.657947,0.342053, maf-5-some-pop,maf-5-all-pops 916 chr1 43446605 43446606 rs698046 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop 916 chr1 43450728 43450729 rs11210774 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops 916 chr1 43451337 43451338 rs2367162 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop,genotype-conflict 916 chr1 43455282 43455283 rs10158845 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2855.000000,2153.000000, 0.570088,0.429912, maf-5-some-pop,maf-5-all-pops 916 chr1 43456364 43456365 rs2367163 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop,maf-5-all-pops,genotype-conflict 916 chr1 43456465 43456466 rs4660696 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2841.000000,2167.000000, 0.567292,0.432708, maf-5-some-pop,maf-5-all-pops 916 chr1 43462019 43462020 rs9726252 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3439.000000,1569.000000, 0.686701,0.313299, maf-5-some-pop,maf-5-all-pops 916 chr1 43462765 43462766 rs12078178 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 916 chr1 43467067 43467068 rs2792599 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2366.000000,2642.000000,2642.000000,2366.000000, 0.236222,0.263778,0.263778,0.236222, maf-5-some-pop,maf-5-all-pops 916 chr1 43468554 43468555 rs841568 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1186.000000,3822.000000,3822.000000,1186.000000, 0.118411,0.381589,0.381589,0.118411, maf-5-some-pop,maf-5-all-pops 916 chr1 43470765 43470766 rs1754154 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM, 2 G,T, 4433.000000,575.000000, 0.885184,0.114816, maf-5-some-pop,microattr-tpa 916 chr1 43471181 43471182 rs9326132 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2765.000000,2243.000000, 0.552117,0.447883, maf-5-some-pop,maf-5-all-pops,genotype-conflict 916 chr1 43471612 43471613 rs13375629 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 916 chr1 43476956 43476957 rs644553 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 647.000000,4361.000000,4361.000000,647.000000, 0.064597,0.435403,0.435403,0.064597, maf-5-some-pop 916 chr1 43486623 43486624 rs597479 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4381.000000,627.000000,627.000000,4381.000000, 0.437400,0.062600,0.062600,0.437400, maf-5-some-pop,maf-5-all-pops 916 chr1 43487660 43487661 rs1472284 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2757.000000,2251.000000, 0.550519,0.449481, maf-5-some-pop,maf-5-all-pops 916 chr1 43494778 43494779 rs624969 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 916 chr1 43499675 43499676 rs841385 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2814.000000,2194.000000, 0.561901,0.438099, maf-5-some-pop,maf-5-all-pops 916 chr1 43502931 43502932 rs841390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3101.000000,1907.000000, 0.619209,0.380791, maf-5-some-pop,maf-5-all-pops 916 chr1 43504139 43504140 rs841392 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 275.000000,4733.000000, 0.054912,0.945088, maf-5-some-pop 916 chr1 43504357 43504358 rs841393 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 916 chr1 43505439 43505440 rs634669 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1516.000000,3492.000000,3492.000000,1516.000000, 0.151358,0.348642,0.348642,0.151358, maf-5-some-pop,maf-5-all-pops 916 chr1 43506476 43506477 rs17140015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop,maf-5-all-pops 916 chr1 43506622 43506623 rs4660242 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1884.000000,3124.000000, 0.376198,0.623802, maf-5-some-pop,maf-5-all-pops 916 chr1 43507897 43507898 rs666111 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3801.000000,1207.000000, 0.758986,0.241014, maf-5-some-pop,genotype-conflict 916 chr1 43511644 43511645 rs864560 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,TISHKOFF, 4 A,C,G,T, 4923.000000,85.000000,85.000000,4923.000000, 0.491514,0.008486,0.008486,0.491514, maf-5-some-pop 916 chr1 43512212 43512213 rs474731 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop 916 chr1 43512399 43512400 rs17140030 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop 916 chr1 43512952 43512953 rs649096 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 916 chr1 43513216 43513217 rs17140039 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 916 chr1 43514320 43514321 rs523755 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1158.000000,3850.000000, 0.231230,0.768770, maf-5-some-pop 916 chr1 43514625 43514626 rs17140042 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop 917 chr1 43517952 43517953 rs16830248 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,genotype-conflict 917 chr1 43523548 43523549 rs17388983 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop 917 chr1 43523659 43523660 rs841404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 917 chr1 43523769 43523770 rs841406 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,maf-5-all-pops 917 chr1 43526024 43526025 rs636747 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972843, maf-5-some-pop 917 chr1 43527180 43527181 rs841408 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2168.000000,2840.000000,2840.000000,2168.000000, 0.216454,0.283546,0.283546,0.216454, maf-5-some-pop,maf-5-all-pops 917 chr1 43528099 43528100 rs474449 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop 917 chr1 43529202 43529203 rs2225251 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1956.000000,3052.000000,3052.000000,1956.000000, 0.195288,0.304712,0.304712,0.195288, maf-5-some-pop 917 chr1 43530153 43530154 rs588662 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops 917 chr1 43530483 43530484 rs16830252 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 917 chr1 43531530 43531531 rs579001 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1028.000000,3980.000000,3980.000000,1028.000000, 0.102636,0.397364,0.397364,0.102636, maf-5-some-pop 917 chr1 43532831 43532832 rs512337 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1030.000000,3978.000000, 0.205671,0.794329, maf-5-some-pop 917 chr1 43537980 43537981 rs1152771 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop 917 chr1 43540337 43540338 rs1198394 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1014.000000,3994.000000, 0.202476,0.797524, maf-5-some-pop,maf-5-all-pops,genotype-conflict 917 chr1 43542189 43542190 rs562413 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1694.000000,3314.000000,3314.000000,1694.000000, 0.169129,0.330871,0.330871,0.169129, maf-5-some-pop,maf-5-all-pops 917 chr1 43542276 43542277 rs561506 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3719.000000,1289.000000,1289.000000,3719.000000, 0.371306,0.128694,0.128694,0.371306, maf-5-some-pop,maf-5-all-pops 917 chr1 43543616 43543617 rs507481 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2968.000000,2040.000000,2040.000000,2968.000000, 0.296326,0.203674,0.203674,0.296326, maf-5-some-pop,maf-5-all-pops 917 chr1 43543770 43543771 rs1339705 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3276.000000,1732.000000,1732.000000,3276.000000, 0.327077,0.172923,0.172923,0.327077, maf-5-some-pop,maf-5-all-pops 917 chr1 43548256 43548257 rs583116 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3814.000000,1194.000000, 0.761581,0.238419, maf-5-some-pop,genotype-conflict 917 chr1 43548397 43548398 rs11210782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 917 chr1 43548418 43548419 rs583682 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1127.000000,3881.000000, 0.225040,0.774960, maf-5-some-pop,genotype-conflict 917 chr1 43550535 43550536 rs1691310 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3741.000000,1267.000000, 0.747005,0.252995, maf-5-some-pop,maf-5-all-pops 917 chr1 43554650 43554651 rs582263 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 668.000000,4340.000000, 0.133387,0.866613, maf-5-some-pop 917 chr1 43559586 43559587 rs1308334 0 - C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 917 chr1 43576320 43576321 rs10890236 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2114.000000,2894.000000, 0.422125,0.577875, maf-5-some-pop,maf-5-all-pops 917 chr1 43595230 43595231 rs16830355 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4407.000000,601.000000, 0.879992,0.120008, maf-5-some-pop 917 chr1 43595692 43595693 rs16830356 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop 917 chr1 43596383 43596384 rs16830359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 291.000000,4717.000000, 0.058107,0.941893, maf-5-some-pop,microattr-tpa,genotype-conflict 917 chr1 43596840 43596841 rs694080 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop 917 chr1 43596932 43596933 rs509668 0 + C C A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 3 A,C,G, 4.000000,4614.000000,390.000000, 0.000799,0.921326,0.077875, maf-5-some-pop,genotype-conflict 917 chr1 43597013 43597014 rs585655 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop,genotype-conflict 917 chr1 43597228 43597229 rs7518482 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop 917 chr1 43597391 43597392 rs535099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop,genotype-conflict 917 chr1 43600930 43600931 rs490876 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1556.000000,3452.000000, 0.310703,0.689297, maf-5-some-pop,maf-5-all-pops 917 chr1 43602320 43602321 rs558404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 1044.000000,3964.000000, 0.208466,0.791534, maf-5-some-pop,genotype-conflict 917 chr1 43603714 43603715 rs601504 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1906.000000,3102.000000, 0.380591,0.619409, maf-5-some-pop,maf-5-all-pops 917 chr1 43605869 43605870 rs545220 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1267.000000,3741.000000, 0.252995,0.747005, maf-5-some-pop,maf-5-all-pops 917 chr1 43610138 43610139 rs16830399 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,genotype-conflict 917 chr1 43611004 43611005 rs627263 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 917 chr1 43611229 43611230 rs641350 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2985.000000,2023.000000, 0.596046,0.403954, maf-5-some-pop,maf-5-all-pops 917 chr1 43611452 43611453 rs511875 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,genotype-conflict 917 chr1 43616336 43616337 rs475093 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 598.000000,4410.000000, 0.119409,0.880591, maf-5-some-pop,genotype-conflict 917 chr1 43616425 43616426 rs636969 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 G,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop 917 chr1 43616645 43616646 rs16830421 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 917 chr1 43616752 43616753 rs610200 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3483.000000,1525.000000, 0.695487,0.304513, maf-5-some-pop 917 chr1 43618409 43618410 rs7548782 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 917 chr1 43618725 43618726 rs2453416 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3212.000000,1796.000000, 0.641374,0.358626, maf-5-some-pop 917 chr1 43618968 43618969 rs12033506 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3157.000000,1851.000000, 0.630391,0.369609, maf-5-some-pop,maf-5-all-pops 917 chr1 43620711 43620712 rs1612595 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1846.000000,3162.000000, 0.368610,0.631390, maf-5-some-pop,maf-5-all-pops 917 chr1 43623643 43623644 rs672429 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2458.000000,2550.000000, 0.490815,0.509185, maf-5-some-pop,maf-5-all-pops 917 chr1 43627975 43627976 rs11210796 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop,genotype-conflict 917 chr1 43628448 43628449 rs1198836 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 705.000000,4303.000000,4303.000000,705.000000, 0.070387,0.429613,0.429613,0.070387, maf-5-some-pop,maf-5-all-pops 917 chr1 43640543 43640544 rs11210802 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop 917 chr1 43640608 43640609 rs11210803 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,maf-5-all-pops 917 chr1 43640646 43640647 rs2453410 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop,genotype-conflict 917 chr1 43641072 43641073 rs12087752 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop,genotype-conflict 917 chr1 43641911 43641912 rs672538 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2375.000000,2633.000000, 0.474241,0.525759, maf-5-some-pop,maf-5-all-pops,genotype-conflict 917 chr1 43642215 43642216 rs17390635 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,G, 4083.000000,925.000000, 0.815296,0.184704, maf-5-some-pop 918 chr1 43663375 43663376 rs513009 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1408.000000,3600.000000,3600.000000,1408.000000, 0.140575,0.359425,0.359425,0.140575, maf-5-some-pop,genotype-conflict 918 chr1 43663658 43663659 rs598736 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 168.000000,4840.000000,4840.000000,168.000000, 0.016773,0.483227,0.483227,0.016773, maf-5-some-pop 918 chr1 43664217 43664218 rs603123 0 - C C A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1012.000000,3996.000000,3996.000000,1012.000000, 0.101038,0.398962,0.398962,0.101038, maf-5-some-pop,maf-5-all-pops 918 chr1 43664735 43664736 rs12058192 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 838.000000,4170.000000, 0.167332,0.832668, maf-5-some-pop,maf-5-all-pops 918 chr1 43668039 43668040 rs12034998 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3727.000000,1281.000000, 0.744209,0.255791, maf-5-some-pop 918 chr1 43670486 43670487 rs11210811 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3726.000000,1282.000000, 0.744010,0.255990, maf-5-some-pop 918 chr1 43673145 43673146 rs6661035 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2361.000000,2647.000000, 0.471446,0.528554, maf-5-some-pop,maf-5-all-pops 918 chr1 43673644 43673645 rs2764420 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3489.000000,1519.000000,1519.000000,3489.000000, 0.348343,0.151657,0.151657,0.348343, maf-5-some-pop,maf-5-all-pops 918 chr1 43674973 43674974 rs2453414 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4723.000000,285.000000,285.000000,4723.000000, 0.471546,0.028454,0.028454,0.471546, maf-5-some-pop 918 chr1 43675016 43675017 rs10890244 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2366.000000,2642.000000, 0.472444,0.527556, maf-5-some-pop 918 chr1 43675466 43675467 rs2453412 0 - G G C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3480.000000,1528.000000,1528.000000,3480.000000, 0.347444,0.152556,0.152556,0.347444, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43676286 43676287 rs9429125 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4978.000000,30.000000, 0.994010,0.005990, 918 chr1 43678676 43678677 rs1760672 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43682460 43682461 rs613956 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,genotype-conflict 918 chr1 43682656 43682657 rs12140718 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop 918 chr1 43683365 43683366 rs644651 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 847.000000,4161.000000, 0.169129,0.830871, maf-5-some-pop 918 chr1 43683611 43683612 rs17391130 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43688319 43688320 rs4660249 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1301.000000,3707.000000, 0.259784,0.740216, maf-5-some-pop,genotype-conflict 918 chr1 43693623 43693624 rs510789 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4570.000000,438.000000, 0.912540,0.087460, maf-5-some-pop,genotype-conflict 918 chr1 43699251 43699252 rs41509745 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 918 chr1 43699342 43699343 rs1198921 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43699969 43699970 rs2484714 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 A,G, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop 918 chr1 43700139 43700140 rs2483688 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1020.000000,3988.000000,3988.000000,1020.000000, 0.101837,0.398163,0.398163,0.101837, maf-5-some-pop,genotype-conflict 918 chr1 43700463 43700464 rs12093316 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4404.000000,604.000000, 0.879393,0.120607, maf-5-some-pop 918 chr1 43704022 43704023 rs7556572 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop,maf-5-all-pops 918 chr1 43704655 43704656 rs1198975 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1124.000000,3884.000000,3884.000000,1124.000000, 0.112220,0.387780,0.387780,0.112220, maf-5-some-pop 918 chr1 43707282 43707283 rs10493115 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1260.000000,3748.000000, 0.251597,0.748403, maf-5-some-pop,genotype-conflict 918 chr1 43713318 43713319 rs2764418 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 918 chr1 43718077 43718078 rs10890246 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops 918 chr1 43720993 43720994 rs3862227 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3205.000000,1803.000000, 0.639976,0.360024, maf-5-some-pop,genotype-conflict 918 chr1 43721709 43721710 rs11210819 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop 918 chr1 43729621 43729622 rs12098084 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop,maf-5-all-pops 918 chr1 43730858 43730859 rs1760673 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3321.000000,1687.000000, 0.663139,0.336861, maf-5-some-pop,maf-5-all-pops 918 chr1 43741223 43741224 rs2151673 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2044.000000,2964.000000, 0.408147,0.591853, maf-5-some-pop,maf-5-all-pops 918 chr1 43742956 43742957 rs2860338 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3793.000000,1215.000000,1215.000000,3793.000000, 0.378694,0.121306,0.121306,0.378694, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43745828 43745829 rs12731885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 918 chr1 43745867 43745868 rs16830668 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 198.000000,4810.000000, 0.039537,0.960463, maf-5-some-pop 918 chr1 43757761 43757762 rs34783763 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 710.000000,4298.000000, 0.141773,0.858227, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43760235 43760236 rs7549876 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3802.000000,1206.000000, 0.759185,0.240815, maf-5-some-pop,maf-5-all-pops 918 chr1 43760317 43760318 rs2991343 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 61.000000,4947.000000, 0.012181,0.987819, maf-5-some-pop 918 chr1 43762425 43762426 rs9793061 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4967.000000,41.000000, 0.991813,0.008187, 918 chr1 43763085 43763086 rs11210831 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3354.000000,1654.000000, 0.669728,0.330272, maf-5-some-pop 918 chr1 43764083 43764084 rs3120047 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3441.000000,1567.000000, 0.687101,0.312899, maf-5-some-pop,maf-5-all-pops 918 chr1 43764680 43764681 rs3806402 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 4026.000000,982.000000, 0.803914,0.196086, maf-5-some-pop,maf-5-all-pops 918 chr1 43774436 43774437 rs1467809 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop,maf-5-all-pops,genotype-conflict 918 chr1 43775994 43775995 rs6694837 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 919 chr1 43785767 43785768 rs1098182 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop 919 chr1 43792806 43792807 rs12076751 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3861.000000,1147.000000, 0.770966,0.229034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 919 chr1 43793213 43793214 rs4660731 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2441.000000,2567.000000, 0.487420,0.512580, maf-5-some-pop,maf-5-all-pops 919 chr1 43800000 43800001 rs1199038 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4023.000000,985.000000, 0.803315,0.196685, maf-5-some-pop 919 chr1 43804339 43804340 rs12731981 0 + G G A/G genomic single unknown 0 0 missense exact 1 17 1000GENOMES,ABI,AFFY,APPLERA_GI,CANCER-GENOME,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop 919 chr1 43827189 43827190 rs11210838 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,C, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,genotype-conflict 919 chr1 43839809 43839810 rs12039931 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,C, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 919 chr1 43842826 43842827 rs4141740 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 1094.000000,3914.000000, 0.218450,0.781550, maf-5-some-pop,maf-5-all-pops 919 chr1 43842999 43843000 rs4141741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3885.000000,1123.000000, 0.775759,0.224241, maf-5-some-pop,maf-5-all-pops,genotype-conflict 919 chr1 43857099 43857100 rs839757 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 A,G, 2986.000000,2022.000000, 0.596246,0.403754, maf-5-some-pop,maf-5-all-pops,genotype-conflict 919 chr1 43859226 43859227 rs12126199 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 919 chr1 43871591 43871592 rs11803612 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,KRIBB_YJKIM, 2 G,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 919 chr1 43873373 43873374 rs839770 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1210.000000,3798.000000, 0.241613,0.758387, maf-5-some-pop,maf-5-all-pops 919 chr1 43876604 43876605 rs7410813 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM, 2 C,T, 33.000000,4975.000000, 0.006589,0.993411, 919 chr1 43878711 43878712 rs2494997 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2980.000000,2028.000000, 0.595048,0.404952, maf-5-some-pop,maf-5-all-pops 919 chr1 43881940 43881941 rs1999674 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2032.000000,2976.000000, 0.405751,0.594249, maf-5-some-pop,maf-5-all-pops,genotype-conflict 919 chr1 43901915 43901916 rs2842180 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,genotype-conflict 920 chr1 43909264 43909265 rs2255632 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1107.000000,3901.000000, 0.221046,0.778954, maf-5-some-pop,maf-5-all-pops,genotype-conflict 920 chr1 43917334 43917335 rs2297686 0 + C C C/T genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 11 1000GENOMES,AFFY,CLINSEQ_SNP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,YUSUKE, 2 C,T, 4975.000000,33.000000, 0.993411,0.006589, maf-5-some-pop 920 chr1 43917408 43917409 rs2251804 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1042.000000,3966.000000, 0.208067,0.791933, maf-5-some-pop,genotype-conflict 920 chr1 43920685 43920686 rs2782651 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 2026.000000,2982.000000, 0.404553,0.595447, maf-5-some-pop,maf-5-all-pops 920 chr1 43921383 43921384 rs1334973 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1253.000000,3755.000000, 0.250200,0.749800, maf-5-some-pop,maf-5-all-pops 920 chr1 43926304 43926305 rs2782652 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1718.000000,3290.000000, 0.343051,0.656949, maf-5-some-pop,maf-5-all-pops 920 chr1 43941507 43941508 rs12069733 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2155.000000,2853.000000, 0.430312,0.569688, maf-5-some-pop,maf-5-all-pops,microattr-tpa 920 chr1 43950385 43950386 rs1591381 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4899.000000,109.000000,109.000000,4899.000000, 0.489117,0.010883,0.010883,0.489117, maf-5-some-pop 920 chr1 43952390 43952391 rs1591380 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 42.000000,4966.000000,4966.000000,42.000000, 0.004193,0.495807,0.495807,0.004193, maf-5-some-pop 920 chr1 43957490 43957491 rs6429605 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 920 chr1 43957514 43957515 rs6687571 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2067.000000,2941.000000, 0.412740,0.587260, maf-5-some-pop,maf-5-all-pops 920 chr1 43960529 43960530 rs2039528 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2940.000000,2068.000000,2068.000000,2940.000000, 0.293530,0.206470,0.206470,0.293530, maf-5-some-pop,maf-5-all-pops 920 chr1 43974763 43974764 rs882464 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3195.000000,1813.000000,1813.000000,3195.000000, 0.318990,0.181010,0.181010,0.318990, maf-5-some-pop,maf-5-all-pops 920 chr1 43976156 43976157 rs2819341 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1615.000000,3393.000000,3393.000000,1615.000000, 0.161242,0.338758,0.338758,0.161242, maf-5-some-pop,maf-5-all-pops,genotype-conflict 920 chr1 43976265 43976266 rs10890251 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2781.000000,2227.000000, 0.555312,0.444688, maf-5-some-pop,maf-5-all-pops 920 chr1 43978836 43978837 rs11210858 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1962.000000,3046.000000, 0.391773,0.608227, maf-5-some-pop,maf-5-all-pops 920 chr1 43979781 43979782 rs11210859 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops 920 chr1 43980618 43980619 rs16830895 0 + C C A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,T, 119.000000,4792.000000,97.000000, 0.023762,0.956869,0.019369, maf-5-some-pop 920 chr1 43980906 43980907 rs16830898 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 920 chr1 43981846 43981847 rs17400240 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 920 chr1 43981960 43981961 rs2367617 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3006.000000,2002.000000, 0.600240,0.399760, maf-5-some-pop,maf-5-all-pops 920 chr1 43982526 43982527 rs11210860 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop 920 chr1 43987058 43987059 rs7518769 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,genotype-conflict 920 chr1 43987515 43987516 rs41341645 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 920 chr1 43991831 43991832 rs11210864 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 920 chr1 43992892 43992893 rs11577317 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3259.000000,1749.000000, 0.650759,0.349241, maf-5-some-pop,maf-5-all-pops 920 chr1 44004376 44004377 rs2819331 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop 920 chr1 44013354 44013355 rs2782641 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3673.000000,1335.000000, 0.733427,0.266573, maf-5-some-pop,maf-5-all-pops,genotype-conflict 920 chr1 44014572 44014573 rs2819333 0 + A A A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1290.000000,3718.000000, 0.257588,0.742412, maf-5-some-pop,maf-5-all-pops 920 chr1 44014948 44014949 rs2842187 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 918.000000,4090.000000,4090.000000,918.000000, 0.091653,0.408347,0.408347,0.091653, maf-5-some-pop,maf-5-all-pops 920 chr1 44026088 44026089 rs3000761 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 3225.000000,1783.000000, 0.643970,0.356030, maf-5-some-pop,maf-5-all-pops 920 chr1 44029352 44029353 rs11210871 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2391.000000,2617.000000, 0.477436,0.522564, maf-5-some-pop 920 chr1 44034134 44034135 rs7349097 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3183.000000,1825.000000, 0.635583,0.364417, maf-5-some-pop,maf-5-all-pops 920 chr1 44037123 44037124 rs16830922 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop 920 chr1 44038836 44038837 rs10890257 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3870.000000,1138.000000, 0.772764,0.227236, maf-5-some-pop,genotype-conflict 921 chr1 44040843 44040844 rs12058744 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3824.000000,1184.000000, 0.763578,0.236422, maf-5-some-pop,genotype-conflict 921 chr1 44045293 44045294 rs752963 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4318.000000,690.000000, 0.862220,0.137780, maf-5-some-pop 921 chr1 44048282 44048283 rs688627 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop 921 chr1 44052376 44052377 rs10890261 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3243.000000,1765.000000, 0.647564,0.352436, maf-5-some-pop,maf-5-all-pops 921 chr1 44053258 44053259 rs11210879 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3596.000000,1412.000000, 0.718051,0.281949, maf-5-some-pop,genotype-conflict 921 chr1 44058142 44058143 rs3748800 0 + G G A/G genomic single unknown 0 0 missense exact 1 11 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SHGC,SSMP,YUSUKE, 2 A,G, 16.000000,4992.000000, 0.003195,0.996805, maf-5-some-pop 921 chr1 44062826 44062827 rs11582876 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4617.000000,391.000000, 0.921925,0.078075, maf-5-some-pop 921 chr1 44066423 44066424 rs596522 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,YUSUKE, 4 A,C,G,T, 924.000000,4084.000000,4084.000000,924.000000, 0.092252,0.407748,0.407748,0.092252, maf-5-some-pop,genotype-conflict 921 chr1 44066729 44066730 rs3791148 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,YUSUKE, 2 A,G, 5002.000000,6.000000, 0.998802,0.001198, maf-5-some-pop 921 chr1 44070031 44070032 rs530373 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1966.000000,3042.000000, 0.392572,0.607428, maf-5-some-pop,maf-5-all-pops 921 chr1 44071220 44071221 rs631248 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 32 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SEQUENOM,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIAF-CSNP,WI_SSAHASNP, 2 A,G, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop,maf-5-all-pops,genotype-conflict 921 chr1 44071545 44071546 rs11210886 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop 921 chr1 44071795 44071796 rs618369 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SHGC,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2003.000000,3005.000000, 0.399960,0.600040, maf-5-some-pop,maf-5-all-pops,genotype-conflict 921 chr1 44072419 44072420 rs539096 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1387.000000,3621.000000, 0.276957,0.723043, maf-5-some-pop,maf-5-all-pops 921 chr1 44075012 44075013 rs664271 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,TISHKOFF, 2 G,T, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,genotype-conflict 921 chr1 44076629 44076630 rs11210888 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop 921 chr1 44081711 44081712 rs516790 0 + T T G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3694.000000,1314.000000, 0.737620,0.262380, maf-5-some-pop,genotype-conflict 921 chr1 44081911 44081912 rs11804031 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop 921 chr1 44083506 44083507 rs641365 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 33 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WIAF-CSNP, 2 C,T, 3692.000000,1316.000000, 0.737220,0.262780, maf-5-some-pop,genotype-conflict 921 chr1 44087495 44087496 rs673485 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SHGC,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3720.000000,1288.000000,1288.000000,3720.000000, 0.371406,0.128594,0.128594,0.371406, maf-5-some-pop,genotype-conflict 921 chr1 44089631 44089632 rs643445 0 - A A C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1313.000000,3695.000000,3695.000000,1313.000000, 0.131090,0.368910,0.368910,0.131090, maf-5-some-pop 921 chr1 44092026 44092027 rs10789438 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3670.000000,1338.000000, 0.732827,0.267173, maf-5-some-pop,genotype-conflict 921 chr1 44100083 44100084 rs11210892 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2231.000000,2777.000000, 0.445487,0.554513, maf-5-some-pop,maf-5-all-pops 921 chr1 44102586 44102587 rs11210894 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop 921 chr1 44105649 44105650 rs547977 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop 921 chr1 44111831 44111832 rs6684191 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1915.000000,3093.000000, 0.382388,0.617612, maf-5-some-pop,maf-5-all-pops 921 chr1 44114198 44114199 rs617521 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 G,T, 1329.000000,3679.000000, 0.265375,0.734625, maf-5-some-pop,genotype-conflict 921 chr1 44117005 44117006 rs660899 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3948.000000,1060.000000, 0.788339,0.211661, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 921 chr1 44121556 44121557 rs2274465 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4070.000000,938.000000, 0.812700,0.187300, maf-5-some-pop,maf-5-all-pops 921 chr1 44123190 44123191 rs10789439 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2614.000000,2394.000000, 0.521965,0.478035, maf-5-some-pop,maf-5-all-pops,genotype-conflict 921 chr1 44129098 44129099 rs656131 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1372.000000,3636.000000,3636.000000,1372.000000, 0.136981,0.363019,0.363019,0.136981, maf-5-some-pop 921 chr1 44129140 44129141 rs656196 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 280.000000,4728.000000,4728.000000,280.000000, 0.027955,0.472045,0.472045,0.027955, maf-5-some-pop 921 chr1 44131793 44131794 rs489319 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1481.000000,3527.000000,3527.000000,1481.000000, 0.147863,0.352137,0.352137,0.147863, maf-5-some-pop,maf-5-all-pops 921 chr1 44133015 44133016 rs607062 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1303.000000,3705.000000,3705.000000,1303.000000, 0.130092,0.369908,0.369908,0.130092, maf-5-some-pop,genotype-conflict 921 chr1 44133027 44133028 rs2296757 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1340.000000,3668.000000, 0.267572,0.732428, maf-5-some-pop 921 chr1 44140074 44140075 rs10789442 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4117.000000,891.000000, 0.822085,0.177915, maf-5-some-pop 921 chr1 44143324 44143325 rs578534 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 A,G, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 921 chr1 44144891 44144892 rs7544894 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop 921 chr1 44154478 44154479 rs3791035 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,G, 853.000000,4155.000000, 0.170327,0.829673, maf-5-some-pop 921 chr1 44159430 44159431 rs7553982 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4603.000000,405.000000, 0.919129,0.080871, maf-5-some-pop 921 chr1 44170315 44170316 rs304302 0 - G G C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,SC_JCM,TSC-CSHL, 4 A,C,G,T, 233.000000,4775.000000,4775.000000,233.000000, 0.023263,0.476737,0.476737,0.023263, maf-5-some-pop,genotype-conflict 922 chr1 44178831 44178832 rs6429635 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2119.000000,2889.000000, 0.423123,0.576877, maf-5-some-pop,maf-5-all-pops 922 chr1 44180806 44180807 rs11210904 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 922 chr1 44195352 44195353 rs4660260 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3124.000000,1884.000000, 0.623802,0.376198, maf-5-some-pop,genotype-conflict 922 chr1 44208121 44208122 rs10890276 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3413.000000,1595.000000, 0.681510,0.318490, maf-5-some-pop 922 chr1 44209697 44209698 rs16831120 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop 922 chr1 44211009 44211010 rs6429638 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1815.000000,3193.000000, 0.362420,0.637580, maf-5-some-pop,maf-5-all-pops 922 chr1 44225531 44225532 rs6664485 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1560.000000,3448.000000, 0.311502,0.688498, maf-5-some-pop,maf-5-all-pops 922 chr1 44226003 44226004 rs6665014 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3819.000000,1189.000000, 0.762580,0.237420, maf-5-some-pop 922 chr1 44226656 44226657 rs7520053 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3670.000000,1338.000000, 0.732827,0.267173, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44228015 44228016 rs7551644 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44230884 44230885 rs3791045 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1569.000000,3439.000000, 0.313299,0.686701, maf-5-some-pop,genotype-conflict 922 chr1 44233531 44233532 rs11590088 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3430.000000,1578.000000, 0.684904,0.315096, maf-5-some-pop,genotype-conflict 922 chr1 44237464 44237465 rs7516647 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4172.000000,836.000000, 0.833067,0.166933, maf-5-some-pop,genotype-conflict 922 chr1 44245776 44245777 rs7549701 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2087.000000,2921.000000, 0.416733,0.583267, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44245938 44245939 rs10890281 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1038.000000,3970.000000, 0.207268,0.792732, maf-5-some-pop,maf-5-all-pops 922 chr1 44249343 44249344 rs12760274 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop,genotype-conflict 922 chr1 44249484 44249485 rs917294 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2092.000000,2916.000000,2916.000000,2092.000000, 0.208866,0.291134,0.291134,0.208866, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44252545 44252546 rs3791050 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,C, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,maf-5-all-pops 922 chr1 44253297 44253298 rs1875653 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1657.000000,3351.000000,3351.000000,1657.000000, 0.165435,0.334565,0.334565,0.165435, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44254144 44254145 rs10890283 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1751.000000,3257.000000, 0.349641,0.650359, maf-5-some-pop,maf-5-all-pops 922 chr1 44254401 44254402 rs6691988 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4010.000000,998.000000, 0.800719,0.199281, maf-5-some-pop 922 chr1 44254513 44254514 rs6701645 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3195.000000,1813.000000, 0.637979,0.362021, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44254585 44254586 rs12741964 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,genotype-conflict 922 chr1 44263064 44263065 rs764767 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4721.000000,287.000000,287.000000,4721.000000, 0.471346,0.028654,0.028654,0.471346, maf-5-some-pop,genotype-conflict 922 chr1 44263414 44263415 rs12401813 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4107.000000,901.000000, 0.820088,0.179912, maf-5-some-pop,maf-5-all-pops 922 chr1 44263615 44263616 rs12116642 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1885.000000,3123.000000, 0.376398,0.623602, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44264497 44264498 rs7515003 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1821.000000,3187.000000, 0.363618,0.636382, maf-5-some-pop,maf-5-all-pops 922 chr1 44266419 44266420 rs11210927 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3193.000000,1815.000000, 0.637580,0.362420, maf-5-some-pop,maf-5-all-pops 922 chr1 44266793 44266794 rs6676424 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop 922 chr1 44269186 44269187 rs12024345 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2100.000000,2908.000000, 0.419329,0.580671, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44274433 44274434 rs246777 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 922 chr1 44274698 44274699 rs246776 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2093.000000,2915.000000,2915.000000,2093.000000, 0.208966,0.291034,0.291034,0.208966, maf-5-some-pop,maf-5-all-pops 922 chr1 44277547 44277548 rs37471 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 894.000000,4114.000000,4114.000000,894.000000, 0.089257,0.410743,0.410743,0.089257, maf-5-some-pop,maf-5-all-pops 922 chr1 44279222 44279223 rs3791062 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1893.000000,3115.000000, 0.377995,0.622005, maf-5-some-pop,maf-5-all-pops,genotype-conflict 922 chr1 44279710 44279711 rs3791063 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop,maf-5-all-pops 922 chr1 44280380 44280381 rs37468 0 - A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 922 chr1 44280424 44280425 rs3791064 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop,maf-5-all-pops 922 chr1 44282203 44282204 rs972444 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1910.000000,3098.000000,3098.000000,1910.000000, 0.190695,0.309305,0.309305,0.190695, maf-5-some-pop,maf-5-all-pops 922 chr1 44287115 44287116 rs3791068 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 1516.000000,3492.000000, 0.302716,0.697284, maf-5-some-pop,maf-5-all-pops 922 chr1 44287147 44287148 rs12137475 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,genotype-conflict 922 chr1 44287413 44287414 rs556667 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop 922 chr1 44297672 44297673 rs3791073 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop 922 chr1 44298563 44298564 rs42962 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,TISHKOFF,YUSUKE, 4 A,C,G,T, 872.000000,4136.000000,4136.000000,872.000000, 0.087061,0.412939,0.412939,0.087061, maf-5-some-pop 923 chr1 44303265 44303266 rs3011217 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2680.000000,2328.000000, 0.535144,0.464856, maf-5-some-pop,maf-5-all-pops 923 chr1 44322199 44322200 rs12144781 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop 923 chr1 44327080 44327081 rs11210932 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 923 chr1 44336388 44336389 rs2906458 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2412.000000,2596.000000,2596.000000,2412.000000, 0.240815,0.259185,0.259185,0.240815, maf-5-some-pop,maf-5-all-pops 923 chr1 44340654 44340655 rs3011230 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop 923 chr1 44340919 44340920 rs2906456 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 576.000000,4432.000000,4432.000000,576.000000, 0.057508,0.442492,0.442492,0.057508, maf-5-some-pop 923 chr1 44342531 44342532 rs7536198 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop 923 chr1 44343172 44343173 rs2428853 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 923 chr1 44343961 44343962 rs2788371 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3834.000000,1174.000000,1174.000000,3834.000000, 0.382788,0.117212,0.117212,0.382788, maf-5-some-pop,maf-5-all-pops 923 chr1 44349279 44349280 rs6680928 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop 923 chr1 44363142 44363143 rs16831389 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop 923 chr1 44363622 44363623 rs16831390 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop,genotype-conflict 923 chr1 44366249 44366250 rs3791101 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 653.000000,4355.000000, 0.130391,0.869609, maf-5-some-pop 923 chr1 44366340 44366341 rs783302 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1622.000000,3386.000000, 0.323882,0.676118, maf-5-some-pop,maf-5-all-pops 923 chr1 44389958 44389959 rs2245439 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4426.000000,582.000000, 0.883786,0.116214, maf-5-some-pop 923 chr1 44390391 44390392 rs9326136 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2568.000000,2440.000000, 0.512780,0.487220, maf-5-some-pop 923 chr1 44391287 44391288 rs12569336 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 290.000000,4718.000000, 0.057907,0.942093, maf-5-some-pop 923 chr1 44391721 44391722 rs2485991 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4033.000000,975.000000,975.000000,4033.000000, 0.402656,0.097344,0.097344,0.402656, maf-5-some-pop 923 chr1 44395785 44395786 rs2108202 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 2410.000000,2598.000000, 0.481230,0.518770, maf-5-some-pop,maf-5-all-pops 923 chr1 44396195 44396196 rs12561948 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 A,G, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop 923 chr1 44396214 44396215 rs1859726 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 597.000000,4411.000000, 0.119209,0.880791, maf-5-some-pop 923 chr1 44396645 44396646 rs6801 0 + C C C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2410.000000,2598.000000, 0.481230,0.518770, maf-5-some-pop,maf-5-all-pops 923 chr1 44399175 44399176 rs2428958 0 - A A A/T genomic single unknown 0 0 untranslated-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 923 chr1 44408968 44408969 rs6680421 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2574.000000,2434.000000, 0.513978,0.486022, maf-5-some-pop,maf-5-all-pops 923 chr1 44414126 44414127 rs1990150 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PHARMGKB_PHAT,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 3695.000000,1313.000000, 0.737819,0.262181, maf-5-some-pop,maf-5-all-pops 923 chr1 44414291 44414292 rs1990151 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop 923 chr1 44417629 44417630 rs6675620 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2282.000000,2726.000000, 0.455671,0.544329, maf-5-some-pop,maf-5-all-pops 923 chr1 44420247 44420248 rs2486013 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 816.000000,4192.000000,4192.000000,816.000000, 0.081470,0.418530,0.418530,0.081470, maf-5-some-pop,maf-5-all-pops,genotype-conflict 923 chr1 44420753 44420754 rs1008137 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop,genotype-conflict 923 chr1 44424713 44424714 rs12045544 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 923 chr1 44424878 44424879 rs4660758 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2728.000000,2280.000000, 0.544728,0.455272, maf-5-some-pop,maf-5-all-pops,genotype-conflict 923 chr1 44428901 44428902 rs3791118 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 924 chr1 44433863 44433864 rs7412307 0 + C C C/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2226.000000,2782.000000, 0.444489,0.555511, maf-5-some-pop,genotype-conflict 924 chr1 44438973 44438974 rs7161 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2565.000000,2443.000000, 0.512181,0.487819, maf-5-some-pop,genotype-conflict 924 chr1 44439784 44439785 rs2486008 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 924 chr1 44442520 44442521 rs12410334 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2207.000000,2801.000000, 0.440695,0.559305, maf-5-some-pop 924 chr1 44446650 44446651 rs2486005 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3286.000000,1722.000000,1722.000000,3286.000000, 0.328075,0.171925,0.171925,0.328075, maf-5-some-pop,maf-5-all-pops 924 chr1 44470777 44470778 rs6660227 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 924 chr1 44471315 44471316 rs6670336 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop 924 chr1 44479724 44479725 rs3791127 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 A,C, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 924 chr1 44487949 44487950 rs11585120 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3746.000000,1262.000000, 0.748003,0.251997, maf-5-some-pop 924 chr1 44502162 44502163 rs16831558 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 924 chr1 44502649 44502650 rs2485992 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,genotype-conflict 924 chr1 44502908 44502909 rs2428965 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1413.000000,3595.000000,3595.000000,1413.000000, 0.141074,0.358926,0.358926,0.141074, maf-5-some-pop,maf-5-all-pops 924 chr1 44503039 44503040 rs2485993 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 897.000000,4111.000000, 0.179113,0.820887, maf-5-some-pop,maf-5-all-pops,genotype-conflict 924 chr1 44507772 44507773 rs17413167 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 835.000000,4173.000000, 0.166733,0.833267, maf-5-some-pop 924 chr1 44508194 44508195 rs1476670 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 372.000000,4636.000000, 0.074281,0.925719, maf-5-some-pop,genotype-conflict 924 chr1 44510127 44510128 rs17413277 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop,maf-5-all-pops,genotype-conflict 924 chr1 44510574 44510575 rs11210945 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 924 chr1 44515695 44515696 rs2057968 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2694.000000,2314.000000, 0.537939,0.462061, maf-5-some-pop,maf-5-all-pops 924 chr1 44517408 44517409 rs1007795 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2064.000000,2944.000000, 0.412141,0.587859, maf-5-some-pop,maf-5-all-pops 924 chr1 44519446 44519447 rs2158822 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3586.000000,1422.000000, 0.716054,0.283946, maf-5-some-pop,maf-5-all-pops 924 chr1 44523705 44523706 rs6429646 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,WI_SSAHASNP, 2 C,T, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop 924 chr1 44526172 44526173 rs6658797 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1723.000000,3285.000000, 0.344050,0.655950, maf-5-some-pop,maf-5-all-pops 924 chr1 44529156 44529157 rs12759480 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2803.000000,2205.000000, 0.559704,0.440296, maf-5-some-pop,maf-5-all-pops 924 chr1 44534000 44534001 rs12130685 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4447.000000,561.000000, 0.887979,0.112021, maf-5-some-pop 924 chr1 44534251 44534252 rs16831607 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 596.000000,4412.000000, 0.119010,0.880990, maf-5-some-pop,genotype-conflict 924 chr1 44535659 44535660 rs7524452 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2711.000000,2297.000000, 0.541334,0.458666, maf-5-some-pop,maf-5-all-pops 924 chr1 44536220 44536221 rs1573967 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2965.000000,2043.000000, 0.592053,0.407947, maf-5-some-pop,maf-5-all-pops 924 chr1 44537400 44537401 rs942755 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2874.000000,2134.000000,2134.000000,2874.000000, 0.286941,0.213059,0.213059,0.286941, maf-5-some-pop,maf-5-all-pops,genotype-conflict 924 chr1 44541286 44541287 rs11210950 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2120.000000,2888.000000, 0.423323,0.576677, maf-5-some-pop,maf-5-all-pops 924 chr1 44541315 44541316 rs7531328 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop 924 chr1 44549859 44549860 rs11585230 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop 924 chr1 44554456 44554457 rs6698333 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2578.000000,2430.000000, 0.514776,0.485224, maf-5-some-pop,maf-5-all-pops 924 chr1 44557362 44557363 rs2429059 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44566220 44566221 rs6429648 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1586.000000,3422.000000, 0.316693,0.683307, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44568321 44568322 rs509261 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,G, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop,genotype-conflict 925 chr1 44568477 44568478 rs4660776 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1601.000000,3407.000000, 0.319688,0.680312, maf-5-some-pop,maf-5-all-pops 925 chr1 44570826 44570827 rs7527921 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4555.000000,453.000000, 0.909545,0.090455, maf-5-some-pop,genotype-conflict 925 chr1 44571030 44571031 rs1408918 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,genotype-conflict 925 chr1 44571544 44571545 rs12048838 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1419.000000,3589.000000, 0.283347,0.716653, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44578558 44578559 rs663818 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1987.000000,3021.000000,3021.000000,1987.000000, 0.198383,0.301617,0.301617,0.198383, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44578763 44578764 rs6682866 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop 925 chr1 44579320 44579321 rs677363 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1990.000000,3018.000000,3018.000000,1990.000000, 0.198682,0.301318,0.301318,0.198682, maf-5-some-pop,maf-5-all-pops 925 chr1 44585615 44585616 rs7513563 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3785.000000,1223.000000, 0.755791,0.244209, maf-5-some-pop,maf-5-all-pops 925 chr1 44585815 44585816 rs9919122 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3856.000000,1152.000000, 0.769968,0.230032, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44587894 44587895 rs2485646 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3784.000000,1224.000000, 0.755591,0.244409, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44592481 44592482 rs7550481 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop 925 chr1 44595046 44595047 rs11210969 0 + T T A/T genomic single unknown 0 0 missense,untranslated-5 exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,T, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop,maf-5-all-pops 925 chr1 44598570 44598571 rs2108304 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1692.000000,3316.000000,3316.000000,1692.000000, 0.168930,0.331070,0.331070,0.168930, maf-5-some-pop,maf-5-all-pops 925 chr1 44602381 44602382 rs2429061 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2282.000000,2726.000000,2726.000000,2282.000000, 0.227835,0.272165,0.272165,0.227835, maf-5-some-pop,maf-5-all-pops 925 chr1 44602421 44602422 rs11581177 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop 925 chr1 44603505 44603506 rs2429060 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2275.000000,2733.000000,2733.000000,2275.000000, 0.227137,0.272863,0.272863,0.227137, maf-5-some-pop,maf-5-all-pops 925 chr1 44603744 44603745 rs2485651 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1373.000000,3635.000000,3635.000000,1373.000000, 0.137081,0.362919,0.362919,0.137081, maf-5-some-pop,maf-5-all-pops 925 chr1 44603800 44603801 rs2485650 0 - A A A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1392.000000,3616.000000,3616.000000,1392.000000, 0.138978,0.361022,0.361022,0.138978, maf-5-some-pop,maf-5-all-pops 925 chr1 44623427 44623428 rs17414232 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop,genotype-conflict 925 chr1 44635187 44635188 rs11210971 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2166.000000,2842.000000, 0.432508,0.567492, maf-5-some-pop,maf-5-all-pops,genotype-conflict 925 chr1 44681112 44681113 rs1291169 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 3496.000000,1512.000000,1512.000000,3496.000000, 0.349042,0.150958,0.150958,0.349042, maf-5-some-pop 925 chr1 44686321 44686322 rs12419 0 - T T A/G genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,NHLBI-ESP,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3635.000000,1373.000000,1373.000000,3635.000000, 0.362919,0.137081,0.137081,0.362919, maf-5-some-pop,maf-5-all-pops 926 chr1 44697672 44697673 rs1152030 0 - A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 926 chr1 44699847 44699848 rs17414912 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 1134.000000,3874.000000, 0.226438,0.773562, maf-5-some-pop,microattr-tpa 926 chr1 44731067 44731068 rs325168 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2843.000000,2165.000000,2165.000000,2843.000000, 0.283846,0.216154,0.216154,0.283846, maf-5-some-pop,maf-5-all-pops 926 chr1 44732456 44732457 rs11210977 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSAHASNP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 926 chr1 44738064 44738065 rs3850115 0 - A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 926 chr1 44740023 44740024 rs369493 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,maf-5-all-pops,genotype-conflict 926 chr1 44745449 44745450 rs10890295 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1199.000000,3809.000000, 0.239417,0.760583, maf-5-some-pop,maf-5-all-pops,genotype-conflict 926 chr1 44751389 44751390 rs325164 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2146.000000,2862.000000,2862.000000,2146.000000, 0.214257,0.285743,0.285743,0.214257, maf-5-some-pop,maf-5-all-pops,genotype-conflict 926 chr1 44751709 44751710 rs325163 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3303.000000,1705.000000,1705.000000,3303.000000, 0.329772,0.170228,0.170228,0.329772, maf-5-some-pop,maf-5-all-pops,genotype-conflict 926 chr1 44754587 44754588 rs2354122 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3728.000000,1280.000000, 0.744409,0.255591, maf-5-some-pop,maf-5-all-pops 926 chr1 44759391 44759392 rs325160 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 926 chr1 44764546 44764547 rs325155 0 - T T A/G genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 101.000000,4907.000000,4907.000000,101.000000, 0.010084,0.489916,0.489916,0.010084, maf-5-some-pop,genotype-conflict 926 chr1 44765645 44765646 rs12058010 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 926 chr1 44766070 44766071 rs6429535 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop,maf-5-all-pops 926 chr1 44767912 44767913 rs325150 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 101.000000,4907.000000,4907.000000,101.000000, 0.010084,0.489916,0.489916,0.010084, maf-5-some-pop 926 chr1 44768391 44768392 rs325149 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1300.000000,3708.000000,3708.000000,1300.000000, 0.129792,0.370208,0.370208,0.129792, maf-5-some-pop,maf-5-all-pops 926 chr1 44771484 44771485 rs3853364 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4535.000000,473.000000,473.000000,4535.000000, 0.452776,0.047224,0.047224,0.452776, maf-5-some-pop 926 chr1 44772092 44772093 rs6697117 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop 926 chr1 44776239 44776240 rs12026967 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1355.000000,3653.000000, 0.270567,0.729433, maf-5-some-pop 926 chr1 44780321 44780322 rs161725 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2170.000000,2838.000000, 0.433307,0.566693, maf-5-some-pop,maf-5-all-pops,genotype-conflict 926 chr1 44781335 44781336 rs161724 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2174.000000,81.000000, 0.964080,0.035920, maf-5-some-pop 926 chr1 44788397 44788398 rs161721 0 - A A A/T genomic single unknown 0 0 intron exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 926 chr1 44790652 44790653 rs161720 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3611.000000,1397.000000,1397.000000,3611.000000, 0.360523,0.139477,0.139477,0.360523, maf-5-some-pop,maf-5-all-pops 926 chr1 44791193 44791194 rs6669164 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop 926 chr1 44793759 44793760 rs11210982 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1636.000000,3372.000000, 0.326677,0.673323, maf-5-some-pop,maf-5-all-pops 926 chr1 44795460 44795461 rs16831920 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 43.000000,4965.000000, 0.008586,0.991414, maf-5-some-pop 926 chr1 44798371 44798372 rs1989951 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1195.000000,3813.000000, 0.238618,0.761382, maf-5-some-pop,maf-5-all-pops 926 chr1 44799951 44799952 rs17416416 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 926 chr1 44800497 44800498 rs12123509 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop 926 chr1 44804479 44804480 rs11210984 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1443.000000,3565.000000, 0.288139,0.711861, maf-5-some-pop,maf-5-all-pops,genotype-conflict 926 chr1 44807163 44807164 rs2524353 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2171.000000,2837.000000, 0.433506,0.566494, maf-5-some-pop,maf-5-all-pops 926 chr1 44809444 44809445 rs172853 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3714.000000,1294.000000, 0.741613,0.258387, maf-5-some-pop,maf-5-all-pops 926 chr1 44820318 44820319 rs226067 0 + A A A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 927 chr1 44828524 44828525 rs4660790 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 G,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,microattr-tpa 927 chr1 44840083 44840084 rs226075 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 927 chr1 44853952 44853953 rs11580300 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3849.000000,1159.000000, 0.768570,0.231430, maf-5-some-pop,maf-5-all-pops 927 chr1 44860223 44860224 rs6429539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1084.000000,3924.000000, 0.216454,0.783546, maf-5-some-pop,genotype-conflict 927 chr1 44860852 44860853 rs7530397 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 272.000000,4736.000000, 0.054313,0.945687, maf-5-some-pop 927 chr1 44878508 44878509 rs11210991 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3439.000000,1569.000000, 0.686701,0.313299, maf-5-some-pop,maf-5-all-pops 927 chr1 44878548 44878549 rs11210992 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1715.000000,3293.000000, 0.342452,0.657548, maf-5-some-pop,maf-5-all-pops,genotype-conflict 927 chr1 44885122 44885123 rs3866643 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1237.000000,3771.000000,3771.000000,1237.000000, 0.123502,0.376498,0.376498,0.123502, maf-5-some-pop,maf-5-all-pops 927 chr1 44889164 44889165 rs1340646 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2664.000000,2344.000000, 0.531949,0.468051, maf-5-some-pop,maf-5-all-pops 927 chr1 44889508 44889509 rs1340647 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop 927 chr1 44891487 44891488 rs12022308 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 927 chr1 44891655 44891656 rs12754891 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop 927 chr1 44902284 44902285 rs6429540 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 927 chr1 44912072 44912073 rs7518522 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2436.000000,2572.000000, 0.486422,0.513578, maf-5-some-pop,maf-5-all-pops 927 chr1 44912146 44912147 rs7555873 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 927 chr1 44920991 44920992 rs1417371 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,genotype-conflict 927 chr1 44921330 44921331 rs12071805 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3694.000000,1314.000000, 0.737620,0.262380, maf-5-some-pop,genotype-conflict 927 chr1 44921383 44921384 rs1340649 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2442.000000,2566.000000, 0.487620,0.512380, maf-5-some-pop,maf-5-all-pops 927 chr1 44922304 44922305 rs12724890 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop 927 chr1 44923597 44923598 rs10890302 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop,genotype-conflict 927 chr1 44925507 44925508 rs6664827 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4018.000000,990.000000, 0.802316,0.197684, maf-5-some-pop 927 chr1 44929864 44929865 rs1890948 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1498.000000,3510.000000,3510.000000,1498.000000, 0.149561,0.350439,0.350439,0.149561, maf-5-some-pop,maf-5-all-pops 927 chr1 44930131 44930132 rs10157599 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4118.000000,890.000000, 0.822284,0.177716, maf-5-some-pop 927 chr1 44932744 44932745 rs4660278 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2835.000000,2173.000000, 0.566094,0.433906, maf-5-some-pop,maf-5-all-pops,genotype-conflict 927 chr1 44936511 44936512 rs6684444 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop 927 chr1 44937973 44937974 rs11211006 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop,maf-5-all-pops 927 chr1 44945308 44945309 rs12069460 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 927 chr1 44946186 44946187 rs7550326 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,C, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 927 chr1 44947615 44947616 rs7549585 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop,genotype-conflict 927 chr1 44948097 44948098 rs12072574 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 4459.000000,549.000000, 0.890375,0.109625, maf-5-some-pop 927 chr1 44949528 44949529 rs10493119 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3723.000000,1285.000000, 0.743411,0.256589, maf-5-some-pop 927 chr1 44952581 44952582 rs12036856 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3433.000000,1575.000000, 0.685503,0.314497, maf-5-some-pop,maf-5-all-pops,genotype-conflict 927 chr1 44954341 44954342 rs2792597 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 431.000000,4577.000000, 0.086062,0.913938, maf-5-some-pop 927 chr1 44954763 44954764 rs17381720 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3770.000000,1238.000000, 0.752796,0.247204, maf-5-some-pop,maf-5-all-pops,genotype-conflict 927 chr1 44954911 44954912 rs812454 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 928 chr1 44958717 44958718 rs12095771 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 928 chr1 44963064 44963065 rs6673706 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 928 chr1 44963813 44963814 rs814124 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 928 chr1 44964526 44964527 rs781792 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 4990.000000,18.000000, 0.996406,0.003594, 928 chr1 44965722 44965723 rs6429541 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3373.000000,1635.000000, 0.673522,0.326478, maf-5-some-pop,maf-5-all-pops 928 chr1 44972841 44972842 rs781773 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 140.000000,4868.000000,4868.000000,140.000000, 0.013978,0.486022,0.486022,0.013978, maf-5-some-pop 928 chr1 44977505 44977506 rs12092739 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 928 chr1 44978854 44978855 rs781791 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 928 chr1 44984144 44984145 rs12744658 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop,maf-5-all-pops 928 chr1 44988432 44988433 rs272531 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 595.000000,4413.000000, 0.118810,0.881190, maf-5-some-pop 928 chr1 44988476 44988477 rs4660809 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 928 chr1 44991277 44991278 rs270724 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop,genotype-conflict 928 chr1 44991880 44991881 rs272536 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 928 chr1 44991895 44991896 rs12069261 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 734.000000,4274.000000, 0.146565,0.853435, maf-5-some-pop 928 chr1 44991980 44991981 rs12132722 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 928 chr1 44991990 44991991 rs12749503 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,G, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop,maf-5-all-pops 928 chr1 44992713 44992714 rs272537 0 - A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 928 chr1 44997789 44997790 rs6669807 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4177.000000,831.000000, 0.834065,0.165935, maf-5-some-pop,maf-5-all-pops,genotype-conflict 928 chr1 44998463 44998464 rs10890308 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1752.000000,3256.000000, 0.349840,0.650160, maf-5-some-pop,maf-5-all-pops 928 chr1 44999613 44999614 rs746733 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 639.000000,4369.000000,4369.000000,639.000000, 0.063798,0.436202,0.436202,0.063798, maf-5-some-pop 928 chr1 45000435 45000436 rs12403454 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop 928 chr1 45003254 45003255 rs156653 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3532.000000,1476.000000, 0.705272,0.294728, maf-5-some-pop,genotype-conflict 928 chr1 45003611 45003612 rs12033316 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 928 chr1 45003892 45003893 rs7545984 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 456.000000,4552.000000, 0.091054,0.908946, maf-5-some-pop 928 chr1 45004203 45004204 rs7554123 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 G,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop 928 chr1 45009800 45009801 rs3896232 0 - A A C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3755.000000,1253.000000,1253.000000,3755.000000, 0.374900,0.125100,0.125100,0.374900, maf-5-some-pop,genotype-conflict 928 chr1 45010744 45010745 rs11211012 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1360.000000,3648.000000, 0.271565,0.728435, maf-5-some-pop,genotype-conflict 928 chr1 45013414 45013415 rs272565 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2974.000000,2034.000000, 0.593850,0.406150, maf-5-some-pop,maf-5-all-pops 928 chr1 45013492 45013493 rs12032873 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 928 chr1 45016279 45016280 rs41390645 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 928 chr1 45018914 45018915 rs156256 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2804.000000,2204.000000,2204.000000,2804.000000, 0.279952,0.220048,0.220048,0.279952, maf-5-some-pop,maf-5-all-pops,genotype-conflict 928 chr1 45018936 45018937 rs156255 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 81.000000,4927.000000,4927.000000,81.000000, 0.008087,0.491913,0.491913,0.008087, maf-5-some-pop 928 chr1 45019167 45019168 rs2924869 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1956.000000,3052.000000,3052.000000,1956.000000, 0.195288,0.304712,0.304712,0.195288, maf-5-some-pop,maf-5-all-pops 928 chr1 45021600 45021601 rs12568345 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,genotype-conflict 928 chr1 45023414 45023415 rs270765 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 4445.000000,563.000000,563.000000,4445.000000, 0.443790,0.056210,0.056210,0.443790, maf-5-some-pop,microattr-tpa 928 chr1 45024341 45024342 rs270764 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3578.000000,1430.000000,1430.000000,3578.000000, 0.357228,0.142772,0.142772,0.357228, maf-5-some-pop,maf-5-all-pops,genotype-conflict 928 chr1 45032883 45032884 rs270760 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 928 chr1 45033370 45033371 rs755597 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 928 chr1 45037322 45037323 rs270756 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3200.000000,1808.000000,1808.000000,3200.000000, 0.319489,0.180511,0.180511,0.319489, maf-5-some-pop,maf-5-all-pops 928 chr1 45039204 45039205 rs69141 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2388.000000,2620.000000,2620.000000,2388.000000, 0.238419,0.261581,0.261581,0.238419, maf-5-some-pop,maf-5-all-pops 928 chr1 45040117 45040118 rs11810526 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,genotype-conflict 928 chr1 45042529 45042530 rs156258 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4846.000000,162.000000,162.000000,4846.000000, 0.483826,0.016174,0.016174,0.483826, maf-5-some-pop 928 chr1 45042740 45042741 rs11211015 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop 928 chr1 45045988 45045989 rs16832091 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop,genotype-conflict 928 chr1 45048817 45048818 rs270706 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 928 chr1 45049457 45049458 rs270707 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops 928 chr1 45050046 45050047 rs270709 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2952.000000,2056.000000,2056.000000,2952.000000, 0.294728,0.205272,0.205272,0.294728, maf-5-some-pop,maf-5-all-pops,genotype-conflict 928 chr1 45054865 45054866 rs270716 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1902.000000,3106.000000, 0.379792,0.620208, maf-5-some-pop 928 chr1 45056292 45056293 rs156650 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 753.000000,4255.000000, 0.150359,0.849641, maf-5-some-pop 928 chr1 45057362 45057363 rs12127289 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3563.000000,1445.000000, 0.711462,0.288538, maf-5-some-pop,maf-5-all-pops 928 chr1 45059828 45059829 rs272527 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 821.000000,4187.000000,4187.000000,821.000000, 0.081969,0.418031,0.418031,0.081969, maf-5-some-pop 928 chr1 45062933 45062934 rs17387066 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,genotype-conflict 928 chr1 45064758 45064759 rs17842391 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1816.000000,3192.000000, 0.362620,0.637380, maf-5-some-pop 928 chr1 45064804 45064805 rs3754423 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 86.000000,4922.000000,4922.000000,86.000000, 0.008586,0.491414,0.491414,0.008586, maf-5-some-pop 928 chr1 45070141 45070142 rs17383073 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 691.000000,4317.000000, 0.137979,0.862021, maf-5-some-pop,maf-5-all-pops 928 chr1 45070341 45070342 rs270740 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2938.000000,2070.000000, 0.586661,0.413339, maf-5-some-pop 928 chr1 45070564 45070565 rs149844 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop 928 chr1 45071195 45071196 rs270738 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop 928 chr1 45074910 45074911 rs17383136 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 862.000000,4146.000000, 0.172125,0.827875, maf-5-some-pop,maf-5-all-pops 928 chr1 45076659 45076660 rs156257 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 4 A,C,G,T, 4760.000000,248.000000,248.000000,4760.000000, 0.475240,0.024760,0.024760,0.475240, maf-5-some-pop 928 chr1 45077488 45077489 rs16832151 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 928 chr1 45078720 45078721 rs270731 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 4642.000000,366.000000,366.000000,4642.000000, 0.463458,0.036542,0.036542,0.463458, maf-5-some-pop 928 chr1 45080293 45080294 rs3012025 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,C, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 928 chr1 45080931 45080932 rs459160 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4709.000000,299.000000,299.000000,4709.000000, 0.470148,0.029852,0.029852,0.470148, maf-5-some-pop 928 chr1 45081100 45081101 rs461043 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 332.000000,4676.000000,4676.000000,332.000000, 0.033147,0.466853,0.466853,0.033147, maf-5-some-pop 928 chr1 45081765 45081766 rs457397 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 4704.000000,304.000000,304.000000,4704.000000, 0.469649,0.030351,0.030351,0.469649, maf-5-some-pop 928 chr1 45082339 45082340 rs11585508 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1902.000000,3106.000000, 0.379792,0.620208, maf-5-some-pop,maf-5-all-pops 929 chr1 45096759 45096760 rs11588956 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3132.000000,1876.000000, 0.625399,0.374601, maf-5-some-pop,maf-5-all-pops 929 chr1 45109100 45109101 rs2355365 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3946.000000,1062.000000, 0.787939,0.212061, maf-5-some-pop 929 chr1 45112716 45112717 rs3768440 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 1174.000000,3834.000000,3834.000000,1174.000000, 0.117212,0.382788,0.382788,0.117212, maf-5-some-pop 929 chr1 45113325 45113326 rs3768439 0 - A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 929 chr1 45114458 45114459 rs3768438 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 200.000000,4808.000000,4808.000000,200.000000, 0.019968,0.480032,0.480032,0.019968, maf-5-some-pop 929 chr1 45119964 45119965 rs3444 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SEQUENOM,SSMP,WIAF, 2 C,T, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop,genotype-conflict 929 chr1 45122024 45122025 rs41524944 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 4 A,C,G,T, 4810.000000,198.000000,198.000000,4810.000000, 0.480232,0.019768,0.019768,0.480232, maf-5-some-pop 929 chr1 45122279 45122280 rs7539327 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 929 chr1 45127183 45127184 rs41468751 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 929 chr1 45144849 45144850 rs4660821 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 929 chr1 45150219 45150220 rs2224403 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop,genotype-conflict 929 chr1 45153115 45153116 rs16832186 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 929 chr1 45155225 45155226 rs16832188 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 929 chr1 45157737 45157738 rs1321703 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4676.000000,332.000000,332.000000,4676.000000, 0.466853,0.033147,0.033147,0.466853, maf-5-some-pop 929 chr1 45161167 45161168 rs17388318 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 929 chr1 45166382 45166383 rs11585861 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop,genotype-conflict 929 chr1 45166512 45166513 rs2355710 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2056.000000,2952.000000, 0.410543,0.589457, maf-5-some-pop,maf-5-all-pops 929 chr1 45167142 45167143 rs2180765 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2228.000000,2780.000000, 0.444888,0.555112, maf-5-some-pop,maf-5-all-pops 929 chr1 45168725 45168726 rs2983713 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 816.000000,4192.000000, 0.162939,0.837061, maf-5-some-pop,genotype-conflict 929 chr1 45172256 45172257 rs12568210 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 929 chr1 45175924 45175925 rs10890313 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1543.000000,3465.000000, 0.308107,0.691893, maf-5-some-pop,maf-5-all-pops,genotype-conflict 929 chr1 45186055 45186056 rs2983715 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1639.000000,3369.000000, 0.327276,0.672724, maf-5-some-pop,maf-5-all-pops 929 chr1 45187284 45187285 rs11211026 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1647.000000,3361.000000, 0.328874,0.671126, maf-5-some-pop,maf-5-all-pops,genotype-conflict 929 chr1 45196573 45196574 rs11211028 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 929 chr1 45196586 45196587 rs9988579 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop 929 chr1 45218541 45218542 rs6688710 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2446.000000,2562.000000, 0.488419,0.511581, maf-5-some-pop 929 chr1 45218894 45218895 rs3795713 0 + A A A/T genomic single unknown 0 0 coding-synon,intron exact 1 25 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 3573.000000,1435.000000, 0.713458,0.286542, maf-5-some-pop,maf-5-all-pops 930 chr1 45219951 45219952 rs6689911 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3573.000000,1435.000000, 0.713458,0.286542, maf-5-some-pop,maf-5-all-pops 930 chr1 45220542 45220543 rs12075324 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,TISHKOFF, 2 A,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 930 chr1 45234388 45234389 rs17391430 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 743.000000,4265.000000, 0.148363,0.851637, maf-5-some-pop,genotype-conflict 930 chr1 45234483 45234484 rs16865894 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 930 chr1 45236622 45236623 rs11808852 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop,maf-5-all-pops 930 chr1 45247353 45247354 rs7515879 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop 930 chr1 45258231 45258232 rs12072767 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4478.000000,530.000000, 0.894169,0.105831, maf-5-some-pop,genotype-conflict 930 chr1 45264544 45264545 rs6676749 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop,maf-5-all-pops 930 chr1 45278093 45278094 rs4073112 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1175.000000,3833.000000, 0.234625,0.765375, maf-5-some-pop,maf-5-all-pops 930 chr1 45293089 45293090 rs11573588 0 - G G C/T genomic single unknown 0 0 coding-synon,ncRNA,missense exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,APPLERA_GI,EGP_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 4 A,C,G,T, 54.000000,4954.000000,4954.000000,54.000000, 0.005391,0.494609,0.494609,0.005391, maf-5-some-pop 930 chr1 45299049 45299050 rs16832263 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1175.000000,3833.000000, 0.234625,0.765375, maf-5-some-pop,maf-5-all-pops 930 chr1 45299643 45299644 rs12095412 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3940.000000,1068.000000, 0.786741,0.213259, maf-5-some-pop,maf-5-all-pops 930 chr1 45305109 45305110 rs7554177 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1875.000000,3133.000000, 0.374401,0.625599, maf-5-some-pop,maf-5-all-pops 930 chr1 45305491 45305492 rs11573543 0 - G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 930 chr1 45312866 45312867 rs7517439 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1044.000000,3964.000000, 0.208466,0.791534, maf-5-some-pop,maf-5-all-pops,genotype-conflict 930 chr1 45321065 45321066 rs11803215 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM, 2 C,T, 4971.000000,37.000000, 0.992612,0.007388, 930 chr1 45321562 45321563 rs11211046 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops 930 chr1 45327715 45327716 rs16832301 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop,maf-5-all-pops 930 chr1 45333255 45333256 rs17390398 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,maf-5-all-pops,genotype-conflict 930 chr1 45333718 45333719 rs17392632 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 831.000000,4177.000000, 0.165935,0.834065, maf-5-some-pop,maf-5-all-pops 931 chr1 45353283 45353284 rs2133501 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 677.000000,4331.000000,4331.000000,677.000000, 0.067592,0.432408,0.432408,0.067592, maf-5-some-pop 931 chr1 45358526 45358527 rs263975 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2263.000000,2745.000000, 0.451877,0.548123, maf-5-some-pop,maf-5-all-pops 931 chr1 45360286 45360287 rs263977 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 G,T, 2263.000000,2745.000000, 0.451877,0.548123, maf-5-some-pop,maf-5-all-pops,genotype-conflict 931 chr1 45360657 45360658 rs3767490 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4288.000000,720.000000,720.000000,4288.000000, 0.428115,0.071885,0.071885,0.428115, maf-5-some-pop,maf-5-all-pops 931 chr1 45362444 45362445 rs10890315 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop 931 chr1 45362991 45362992 rs263978 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3962.000000,1046.000000, 0.791134,0.208866, maf-5-some-pop 931 chr1 45363886 45363887 rs608649 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1134.000000,3874.000000, 0.226438,0.773562, maf-5-some-pop,maf-5-all-pops 931 chr1 45365104 45365105 rs263967 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3784.000000,1224.000000,1224.000000,3784.000000, 0.377796,0.122204,0.122204,0.377796, maf-5-some-pop,maf-5-all-pops 931 chr1 45365368 45365369 rs12084731 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 931 chr1 45365833 45365834 rs7531019 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3969.000000,1039.000000, 0.792532,0.207468, maf-5-some-pop,maf-5-all-pops 931 chr1 45369085 45369086 rs1572379 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3805.000000,1203.000000, 0.759784,0.240216, maf-5-some-pop,maf-5-all-pops 931 chr1 45392954 45392955 rs3903059 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 931 chr1 45393276 45393277 rs4082644 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4178.000000,830.000000,830.000000,4178.000000, 0.417133,0.082867,0.082867,0.417133, maf-5-some-pop,maf-5-all-pops 931 chr1 45394368 45394369 rs12735637 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3862.000000,1146.000000, 0.771166,0.228834, maf-5-some-pop 931 chr1 45396918 45396919 rs12125367 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1145.000000,3863.000000, 0.228634,0.771366, maf-5-some-pop,maf-5-all-pops 931 chr1 45413845 45413846 rs1022814 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4181.000000,827.000000, 0.834864,0.165136, maf-5-some-pop 931 chr1 45419612 45419613 rs7529213 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop,maf-5-all-pops 931 chr1 45423942 45423943 rs264002 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4101.000000,907.000000, 0.818890,0.181110, maf-5-some-pop,maf-5-all-pops,genotype-conflict 931 chr1 45429456 45429457 rs17390859 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 703.000000,4305.000000, 0.140375,0.859625, maf-5-some-pop 931 chr1 45429681 45429682 rs17390900 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 808.000000,4200.000000, 0.161342,0.838658, maf-5-some-pop,maf-5-all-pops 931 chr1 45430217 45430218 rs11211059 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3867.000000,1141.000000, 0.772165,0.227835, maf-5-some-pop,maf-5-all-pops 931 chr1 45434658 45434659 rs17393206 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop 931 chr1 45438876 45438877 rs263998 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2617.000000,2391.000000,2391.000000,2617.000000, 0.261282,0.238718,0.238718,0.261282, maf-5-some-pop,maf-5-all-pops 931 chr1 45441316 45441317 rs263990 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 931 chr1 45444037 45444038 rs11556200 0 - G G C/T genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 1485.000000,3523.000000,3523.000000,1485.000000, 0.148263,0.351737,0.351737,0.148263, maf-5-some-pop,maf-5-all-pops 931 chr1 45444995 45444996 rs264025 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3437.000000,1571.000000, 0.686302,0.313698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 931 chr1 45447798 45447799 rs12749130 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 C,T, 3866.000000,1142.000000, 0.771965,0.228035, maf-5-some-pop,maf-5-all-pops,genotype-conflict 931 chr1 45457277 45457278 rs4399199 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,maf-5-all-pops 931 chr1 45457707 45457708 rs12126318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1621.000000,3387.000000, 0.323682,0.676318, maf-5-some-pop,maf-5-all-pops 931 chr1 45466510 45466511 rs7535347 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1607.000000,3401.000000, 0.320887,0.679113, maf-5-some-pop,maf-5-all-pops 931 chr1 45466926 45466927 rs6666806 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2905.000000,2103.000000, 0.580072,0.419928, maf-5-some-pop,maf-5-all-pops 931 chr1 45470129 45470130 rs7528534 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 931 chr1 45474007 45474008 rs7541207 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 931 chr1 45477674 45477675 rs2236576 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 931 chr1 45480828 45480829 rs13948 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GENAISSANCE,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1238.000000,3770.000000, 0.247204,0.752796, maf-5-some-pop 932 chr1 45496394 45496395 rs6678726 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3676.000000,1332.000000, 0.734026,0.265974, maf-5-some-pop,maf-5-all-pops 932 chr1 45500293 45500294 rs6671633 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 932 chr1 45523571 45523572 rs17397799 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,T, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 932 chr1 45523892 45523893 rs3850855 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3557.000000,1451.000000, 0.710264,0.289736, maf-5-some-pop,maf-5-all-pops 932 chr1 45528075 45528076 rs6698681 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop 932 chr1 45530571 45530572 rs6693384 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop 932 chr1 45548253 45548254 rs346707 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops 932 chr1 45548307 45548308 rs346706 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4220.000000,788.000000, 0.842652,0.157348, maf-5-some-pop,maf-5-all-pops 932 chr1 45554024 45554025 rs346703 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop 932 chr1 45560560 45560561 rs11211076 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3941.000000,1067.000000, 0.786941,0.213059, maf-5-some-pop 932 chr1 45569346 45569347 rs11211079 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 G,T, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop,genotype-conflict 932 chr1 45585347 45585348 rs346732 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,AFFY_GWHS,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop,maf-5-all-pops 932 chr1 45592885 45592886 rs1226757 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop 932 chr1 45596446 45596447 rs346696 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3597.000000,1411.000000, 0.718251,0.281749, maf-5-some-pop,maf-5-all-pops,genotype-conflict 932 chr1 45596830 45596831 rs12063926 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop,genotype-conflict 932 chr1 45598028 45598029 rs346693 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 G,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops 932 chr1 45610428 45610429 rs346718 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 367.000000,4641.000000,4641.000000,367.000000, 0.036641,0.463359,0.463359,0.036641, maf-5-some-pop 933 chr1 45617311 45617312 rs11585488 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 933 chr1 45620133 45620134 rs346722 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop 933 chr1 45622562 45622563 rs7513367 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,G, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop 933 chr1 45635801 45635802 rs1698295 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop,maf-5-all-pops,genotype-conflict 933 chr1 45641453 45641454 rs2997465 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3600.000000,1408.000000, 0.718850,0.281150, maf-5-some-pop,maf-5-all-pops 933 chr1 45665579 45665580 rs3009973 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop 933 chr1 45668733 45668734 rs4660841 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 778.000000,4230.000000, 0.155351,0.844649, maf-5-some-pop,maf-5-all-pops 933 chr1 45677817 45677818 rs1938302 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 933 chr1 45683694 45683695 rs1317587 0 - A A A/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 933 chr1 45697067 45697068 rs34398124 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM, 2 C,G, 4984.000000,24.000000, 0.995208,0.004792, 933 chr1 45699199 45699200 rs17192059 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 933 chr1 45732313 45732314 rs2839963 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,T, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop,genotype-conflict 933 chr1 45740468 45740469 rs1938297 0 + T T C/T genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop 934 chr1 45763541 45763542 rs6688723 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4226.000000,782.000000, 0.843850,0.156150, maf-5-some-pop,maf-5-all-pops 934 chr1 45764257 45764258 rs6429562 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3505.000000,1503.000000, 0.699880,0.300120, maf-5-some-pop,maf-5-all-pops 934 chr1 45764335 45764336 rs6429563 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops 934 chr1 45764802 45764803 rs6429564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3907.000000,1101.000000, 0.780152,0.219848, maf-5-some-pop,genotype-conflict 934 chr1 45766191 45766192 rs7548931 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4461.000000,547.000000, 0.890775,0.109225, maf-5-some-pop,genotype-conflict 934 chr1 45767430 45767431 rs12122125 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2968.000000,2040.000000, 0.592652,0.407348, maf-5-some-pop,maf-5-all-pops 934 chr1 45791153 45791154 rs10890324 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3195.000000,1813.000000, 0.637979,0.362021, maf-5-some-pop,maf-5-all-pops 934 chr1 45791188 45791189 rs7535487 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop,maf-5-all-pops 934 chr1 45795026 45795027 rs3219497 0 - C C A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ, 4 A,C,G,T, 67.000000,4941.000000,4941.000000,67.000000, 0.006689,0.493311,0.493311,0.006689, maf-5-some-pop,genotype-conflict 934 chr1 45796114 45796115 rs3219495 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,WI_SSAHASNP, 4 A,C,G,T, 364.000000,4644.000000,4644.000000,364.000000, 0.036342,0.463658,0.463658,0.036342, maf-5-some-pop 934 chr1 45798554 45798555 rs3219487 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 315.000000,4693.000000,4693.000000,315.000000, 0.031450,0.468550,0.468550,0.031450, maf-5-some-pop 934 chr1 45800155 45800156 rs3219484 0 - C C A/G genomic single unknown 0 0 near-gene-5,missense,untranslated-5 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,APPLERA_GI,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO, 4 A,C,G,T, 102.000000,4906.000000,4906.000000,102.000000, 0.010184,0.489816,0.489816,0.010184, maf-5-some-pop,genotype-conflict 934 chr1 45804049 45804050 rs3219472 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 1524.000000,3484.000000,3484.000000,1524.000000, 0.152157,0.347843,0.347843,0.152157, maf-5-some-pop,maf-5-all-pops,genotype-conflict 934 chr1 45810090 45810091 rs9429072 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops,genotype-conflict 934 chr1 45813940 45813941 rs2153608 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2909.000000,2099.000000, 0.580871,0.419129, maf-5-some-pop,maf-5-all-pops 934 chr1 45814057 45814058 rs2153609 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3035.000000,1973.000000, 0.606030,0.393970, maf-5-some-pop,maf-5-all-pops 934 chr1 45814102 45814103 rs2185549 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1560.000000,3448.000000, 0.311502,0.688498, maf-5-some-pop,maf-5-all-pops 934 chr1 45819488 45819489 rs9429076 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2047.000000,2961.000000, 0.408746,0.591254, maf-5-some-pop,maf-5-all-pops 934 chr1 45819871 45819872 rs4660849 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1552.000000,3456.000000, 0.309904,0.690096, maf-5-some-pop,maf-5-all-pops,genotype-conflict 934 chr1 45828942 45828943 rs9326141 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1550.000000,3458.000000, 0.309505,0.690495, maf-5-some-pop,maf-5-all-pops 934 chr1 45839642 45839643 rs7543428 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3425.000000,1583.000000, 0.683906,0.316094, maf-5-some-pop,maf-5-all-pops 934 chr1 45845262 45845263 rs6659464 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop,maf-5-all-pops 934 chr1 45848930 45848931 rs4660852 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop,maf-5-all-pops 934 chr1 45849310 45849311 rs11211101 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1540.000000,3468.000000, 0.307508,0.692492, maf-5-some-pop,maf-5-all-pops 934 chr1 45857175 45857176 rs2487442 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop,maf-5-all-pops,genotype-conflict 935 chr1 45881261 45881262 rs1826691 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1419.000000,3589.000000, 0.283347,0.716653, maf-5-some-pop,maf-5-all-pops 935 chr1 45883642 45883643 rs1771551 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 C,G, 1926.000000,3082.000000, 0.384585,0.615415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 935 chr1 45904814 45904815 rs11211110 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop 935 chr1 45908262 45908263 rs41343546 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 4 A,C,G,T, 4815.000000,193.000000,193.000000,4815.000000, 0.480731,0.019269,0.019269,0.480731, maf-5-some-pop 935 chr1 45917273 45917274 rs16832540 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 935 chr1 45926494 45926495 rs2055145 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3649.000000,1359.000000, 0.728634,0.271366, maf-5-some-pop,maf-5-all-pops,genotype-conflict 935 chr1 45929588 45929589 rs12738318 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2700.000000,2308.000000, 0.539137,0.460863, maf-5-some-pop,maf-5-all-pops 935 chr1 45934561 45934562 rs781059 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 714.000000,4294.000000,4294.000000,714.000000, 0.071286,0.428714,0.428714,0.071286, maf-5-some-pop 935 chr1 45935055 45935056 rs781058 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 935 chr1 45954032 45954033 rs12743512 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2199.000000,2809.000000, 0.439097,0.560903, maf-5-some-pop,maf-5-all-pops 935 chr1 45966581 45966582 rs4660864 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4124.000000,884.000000, 0.823482,0.176518, maf-5-some-pop 935 chr1 45973927 45973928 rs2275276 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2380.000000,2628.000000, 0.475240,0.524760, maf-5-some-pop,maf-5-all-pops,genotype-conflict 935 chr1 45978674 45978675 rs4660306 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop,microattr-tpa 935 chr1 45978922 45978923 rs16832557 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,EGP_SNPS,KRIBB_YJKIM,PERLEGEN, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,genotype-conflict 935 chr1 45978972 45978973 rs16832559 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4633.000000,375.000000, 0.925120,0.074880, maf-5-some-pop 935 chr1 45981511 45981512 rs2356559 0 - T T A/G genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 909.000000,4099.000000,4099.000000,909.000000, 0.090755,0.409245,0.409245,0.090755, maf-5-some-pop,genotype-conflict 935 chr1 45981833 45981834 rs6699702 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 935 chr1 45984352 45984353 rs10736426 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3726.000000,1282.000000, 0.744010,0.255990, maf-5-some-pop,maf-5-all-pops 935 chr1 45991078 45991079 rs11211133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 593.000000,4415.000000, 0.118411,0.881589, maf-5-some-pop 935 chr1 45992299 45992300 rs7522705 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 935 chr1 45992459 45992460 rs945179 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 879.000000,4129.000000, 0.175519,0.824481, maf-5-some-pop,genotype-conflict 935 chr1 46001329 46001330 rs6429569 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3720.000000,1288.000000, 0.742812,0.257188, maf-5-some-pop,maf-5-all-pops,genotype-conflict 936 chr1 46009535 46009536 rs487174 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 199.000000,4809.000000,4809.000000,199.000000, 0.019868,0.480132,0.480132,0.019868, maf-5-some-pop,genotype-conflict 936 chr1 46009817 46009818 rs868351 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1301.000000,3707.000000,3707.000000,1301.000000, 0.129892,0.370108,0.370108,0.129892, maf-5-some-pop,maf-5-all-pops,genotype-conflict 936 chr1 46021555 46021556 rs12049503 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops 936 chr1 46021629 46021630 rs2993263 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 2478.000000,2530.000000, 0.494808,0.505192, maf-5-some-pop,maf-5-all-pops 936 chr1 46026736 46026737 rs669417 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4912.000000,96.000000,96.000000,4912.000000, 0.490415,0.009585,0.009585,0.490415, maf-5-some-pop 936 chr1 46035469 46035470 rs3748645 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 42.000000,4966.000000, 0.008387,0.991613, maf-5-some-pop 936 chr1 46035759 46035760 rs3014216 0 - A A A/T genomic single unknown 0 0 intron,near-gene-3 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 936 chr1 46039611 46039612 rs2934857 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2650.000000,2358.000000,2358.000000,2650.000000, 0.264577,0.235423,0.235423,0.264577, maf-5-some-pop,maf-5-all-pops 936 chr1 46041099 46041100 rs1084086 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1565.000000,3443.000000,3443.000000,1565.000000, 0.156250,0.343750,0.343750,0.156250, maf-5-some-pop,maf-5-all-pops 936 chr1 46066607 46066608 rs3014210 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1681.000000,3327.000000,3327.000000,1681.000000, 0.167831,0.332169,0.332169,0.167831, maf-5-some-pop,maf-5-all-pops 936 chr1 46078190 46078191 rs17410308 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 A,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 936 chr1 46078629 46078630 rs2050376 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1607.000000,3401.000000, 0.320887,0.679113, maf-5-some-pop,maf-5-all-pops 936 chr1 46078883 46078884 rs2230659 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 32 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WICVAR,WUGSC_SSAHASNP, 2 C,T, 1611.000000,3397.000000, 0.321685,0.678315, maf-5-some-pop,maf-5-all-pops 936 chr1 46080946 46080947 rs1972410 0 + A A A/C genomic single unknown 0 0 intron exact 1 32 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,C, 1565.000000,3443.000000, 0.312500,0.687500, maf-5-some-pop,maf-5-all-pops 936 chr1 46081281 46081282 rs2991986 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3402.000000,1606.000000, 0.679313,0.320687, maf-5-some-pop,maf-5-all-pops 936 chr1 46084382 46084383 rs1053941 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 936 chr1 46085111 46085112 rs1547924 0 + A A A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 936 chr1 46085355 46085356 rs1547925 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1571.000000,3437.000000, 0.313698,0.686302, maf-5-some-pop,maf-5-all-pops 936 chr1 46085851 46085852 rs2275085 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1612.000000,3396.000000, 0.321885,0.678115, maf-5-some-pop,maf-5-all-pops 936 chr1 46085878 46085879 rs2275086 0 + C C C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1576.000000,3432.000000, 0.314696,0.685304, maf-5-some-pop,maf-5-all-pops,genotype-conflict 936 chr1 46086765 46086766 rs17410855 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 C,T, 4996.000000,12.000000, 0.997604,0.002396, 936 chr1 46086912 46086913 rs3014245 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3434.000000,1574.000000,1574.000000,3434.000000, 0.342851,0.157149,0.157149,0.342851, maf-5-some-pop,maf-5-all-pops 936 chr1 46108490 46108491 rs11211145 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3416.000000,1592.000000, 0.682109,0.317891, maf-5-some-pop,maf-5-all-pops 936 chr1 46109303 46109304 rs5021934 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2520.000000,2488.000000, 0.503195,0.496805, maf-5-some-pop,maf-5-all-pops 936 chr1 46110840 46110841 rs4660313 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1592.000000,3416.000000, 0.317891,0.682109, maf-5-some-pop,maf-5-all-pops 936 chr1 46111039 46111040 rs4660880 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3439.000000,1569.000000, 0.686701,0.313299, maf-5-some-pop,maf-5-all-pops,genotype-conflict 936 chr1 46112692 46112693 rs11211150 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 MixedObserved 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,genotype-conflict 936 chr1 46119350 46119351 rs6662999 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 468.000000,4540.000000, 0.093451,0.906550, maf-5-some-pop,genotype-conflict 937 chr1 46137649 46137650 rs6691110 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 937 chr1 46221616 46221617 rs10430124 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1598.000000,3410.000000, 0.319089,0.680911, maf-5-some-pop,maf-5-all-pops 937 chr1 46223085 46223086 rs11211176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 937 chr1 46223891 46223892 rs10890346 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,maf-5-all-pops 937 chr1 46226348 46226349 rs11211177 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3432.000000,1576.000000, 0.685304,0.314696, maf-5-some-pop,maf-5-all-pops 937 chr1 46236097 46236098 rs4660883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1615.000000,3393.000000, 0.322484,0.677516, maf-5-some-pop,maf-5-all-pops 937 chr1 46236799 46236800 rs11211181 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3103.000000,1905.000000, 0.619609,0.380391, maf-5-some-pop,maf-5-all-pops 937 chr1 46242331 46242332 rs10890347 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1624.000000,3384.000000, 0.324281,0.675719, maf-5-some-pop,maf-5-all-pops 937 chr1 46243755 46243756 rs4660885 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 937 chr1 46245422 46245423 rs11582058 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 613.000000,4395.000000, 0.122404,0.877596, maf-5-some-pop,genotype-conflict 937 chr1 46251348 46251349 rs12239818 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4975.000000,33.000000, 0.993411,0.006589, 937 chr1 46252143 46252144 rs7540578 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 937 chr1 46252716 46252717 rs6702764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 937 chr1 46255003 46255004 rs6661163 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2578.000000,2430.000000, 0.514776,0.485224, maf-5-some-pop,maf-5-all-pops 937 chr1 46262128 46262129 rs7539800 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3432.000000,1576.000000, 0.685304,0.314696, maf-5-some-pop,maf-5-all-pops 938 chr1 46273182 46273183 rs4660316 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 G,T, 4591.000000,417.000000, 0.916733,0.083267, maf-5-some-pop,genotype-conflict 938 chr1 46288351 46288352 rs11211200 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1892.000000,3116.000000, 0.377796,0.622204, maf-5-some-pop,maf-5-all-pops 938 chr1 46306582 46306583 rs10789477 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop 938 chr1 46314169 46314170 rs10749859 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4380.000000,628.000000, 0.874601,0.125399, maf-5-some-pop,genotype-conflict 938 chr1 46321842 46321843 rs6429582 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2424.000000,2584.000000, 0.484026,0.515974, maf-5-some-pop,maf-5-all-pops,genotype-conflict 938 chr1 46346203 46346204 rs12143448 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop 938 chr1 46346233 46346234 rs10890361 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2413.000000,2595.000000, 0.481829,0.518171, maf-5-some-pop,maf-5-all-pops,genotype-conflict 938 chr1 46347327 46347328 rs11211214 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop 938 chr1 46356147 46356148 rs10890363 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2599.000000,2409.000000, 0.518970,0.481030, maf-5-some-pop,maf-5-all-pops,genotype-conflict 938 chr1 46358719 46358720 rs12045409 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 629.000000,4379.000000, 0.125599,0.874401, maf-5-some-pop 938 chr1 46359347 46359348 rs10890365 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3113.000000,1895.000000, 0.621605,0.378395, maf-5-some-pop,maf-5-all-pops 938 chr1 46360053 46360054 rs4545281 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2560.000000,2448.000000, 0.511182,0.488818, maf-5-some-pop,maf-5-all-pops,genotype-conflict 938 chr1 46363879 46363880 rs7556436 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2600.000000,2408.000000, 0.519169,0.480831, maf-5-some-pop,maf-5-all-pops 938 chr1 46388007 46388008 rs6689417 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 629.000000,4379.000000, 0.125599,0.874401, maf-5-some-pop 938 chr1 46389216 46389217 rs10890370 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3171.000000,1837.000000, 0.633187,0.366813, maf-5-some-pop,maf-5-all-pops 938 chr1 46393754 46393755 rs10890373 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop,maf-5-all-pops 939 chr1 46408666 46408667 rs10789486 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3126.000000,1882.000000, 0.624201,0.375799, maf-5-some-pop,maf-5-all-pops 939 chr1 46409175 46409176 rs6700322 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 629.000000,4379.000000, 0.125599,0.874401, maf-5-some-pop 939 chr1 46410656 46410657 rs10890378 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1882.000000,3126.000000, 0.375799,0.624201, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46411145 46411146 rs11211232 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1540.000000,3468.000000, 0.307508,0.692492, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46416347 46416348 rs9804007 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop 939 chr1 46426430 46426431 rs12759880 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 939 chr1 46451075 46451076 rs12093586 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP, 2 C,G, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 939 chr1 46461586 46461587 rs4660905 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3131.000000,1877.000000, 0.625200,0.374800, maf-5-some-pop,maf-5-all-pops 939 chr1 46462125 46462126 rs4660334 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1880.000000,3128.000000, 0.375399,0.624601, maf-5-some-pop,maf-5-all-pops 939 chr1 46462880 46462881 rs4073846 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2579.000000,2429.000000, 0.514976,0.485024, maf-5-some-pop,maf-5-all-pops,microattr-tpa 939 chr1 46463011 46463012 rs4073847 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops 939 chr1 46466390 46466391 rs11579634 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2580.000000,2428.000000, 0.515176,0.484824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46466720 46466721 rs11589562 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2424.000000,2584.000000, 0.484026,0.515974, maf-5-some-pop,maf-5-all-pops 939 chr1 46475835 46475836 rs6677777 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3430.000000,1578.000000, 0.684904,0.315096, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46476586 46476587 rs11211247 0 + T T G/T genomic single unknown 0 0 missense exact 1 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop,genotype-conflict 939 chr1 46485969 46485970 rs946527 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1870.000000,3138.000000,3138.000000,1870.000000, 0.186701,0.313299,0.313299,0.186701, maf-5-some-pop,maf-5-all-pops 939 chr1 46487167 46487168 rs946526 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 55.000000,4953.000000,4953.000000,55.000000, 0.005491,0.494509,0.494509,0.005491, 939 chr1 46492163 46492164 rs785480 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1883.000000,3125.000000, 0.375998,0.624002, maf-5-some-pop,maf-5-all-pops 939 chr1 46495433 46495434 rs2236560 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1913.000000,3095.000000,3095.000000,1913.000000, 0.190994,0.309006,0.309006,0.190994, maf-5-some-pop 939 chr1 46502835 46502836 rs1768809 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2290.000000,2718.000000,2718.000000,2290.000000, 0.228634,0.271366,0.271366,0.228634, maf-5-some-pop 939 chr1 46505053 46505054 rs7538978 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3116.000000,1892.000000, 0.622204,0.377796, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46505146 46505147 rs1707322 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1761.000000,3247.000000,3247.000000,1761.000000, 0.175819,0.324181,0.324181,0.175819, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46505308 46505309 rs1707321 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2516.000000,2492.000000,2492.000000,2516.000000, 0.251198,0.248802,0.248802,0.251198, maf-5-some-pop,maf-5-all-pops,genotype-conflict 939 chr1 46522325 46522326 rs4388641 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4371.000000,637.000000, 0.872804,0.127196, maf-5-some-pop 939 chr1 46522576 46522577 rs785465 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1813.000000,3195.000000,3195.000000,1813.000000, 0.181010,0.318990,0.318990,0.181010, maf-5-some-pop,maf-5-all-pops 940 chr1 46546851 46546852 rs1613296 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1812.000000,3196.000000,3196.000000,1812.000000, 0.180911,0.319089,0.319089,0.180911, maf-5-some-pop,maf-5-all-pops,genotype-conflict 940 chr1 46560034 46560035 rs17101983 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 940 chr1 46587886 46587887 rs785495 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2418.000000,2590.000000, 0.482827,0.517173, maf-5-some-pop,maf-5-all-pops 940 chr1 46600273 46600274 rs2282333 0 - G G A/C genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,YUSUKE, 4 A,C,G,T, 39.000000,4969.000000,4969.000000,39.000000, 0.003894,0.496106,0.496106,0.003894, maf-5-some-pop 940 chr1 46602010 46602011 rs41378047 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,TISHKOFF, 2 A,G, 4979.000000,29.000000, 0.994209,0.005791, maf-5-some-pop 940 chr1 46603347 46603348 rs9429095 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 G,T, 3306.000000,1702.000000, 0.660144,0.339856, maf-5-some-pop 940 chr1 46605368 46605369 rs2486445 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2565.000000,2443.000000, 0.512181,0.487819, maf-5-some-pop 940 chr1 46608656 46608657 rs41401147 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,AFFY_GWHS,ILLUMINA,TISHKOFF, 2 A,G, 29.000000,4979.000000, 0.005791,0.994209, maf-5-some-pop 940 chr1 46617980 46617981 rs1983261 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 180.000000,4828.000000,4828.000000,180.000000, 0.017971,0.482029,0.482029,0.017971, maf-5-some-pop,genotype-conflict 940 chr1 46618633 46618634 rs17102023 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop 940 chr1 46633873 46633874 rs3855959 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2892.000000,2116.000000, 0.577476,0.422524, maf-5-some-pop,genotype-conflict 940 chr1 46635148 46635149 rs3845300 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1401.000000,3607.000000,3607.000000,1401.000000, 0.139876,0.360124,0.360124,0.139876, maf-5-some-pop,maf-5-all-pops,genotype-conflict 940 chr1 46635208 46635209 rs3845301 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2687.000000,2321.000000,2321.000000,2687.000000, 0.268271,0.231729,0.231729,0.268271, maf-5-some-pop,genotype-conflict 940 chr1 46650063 46650064 rs2234268 0 + G G A/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,AFFY,EXOME_CHIP,GENAISSANCE,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 3.000000,5005.000000, 0.000599,0.999401, 940 chr1 46657650 46657651 rs7521880 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1671.000000,3337.000000, 0.333666,0.666334, maf-5-some-pop,maf-5-all-pops 940 chr1 46657798 46657799 rs17102066 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 8 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ, 2 C,T, 4994.000000,14.000000, 0.997204,0.002796, 941 chr1 46671996 46671997 rs7538871 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3395.000000,1613.000000, 0.677915,0.322085, maf-5-some-pop,maf-5-all-pops 941 chr1 46684265 46684266 rs6696085 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4019.000000,989.000000, 0.802516,0.197484, maf-5-some-pop,maf-5-all-pops,genotype-conflict 941 chr1 46686147 46686148 rs10157907 0 + A A A/C genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop 941 chr1 46687860 46687861 rs1355643 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 941 chr1 46690330 46690331 rs12028248 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 941 chr1 46714575 46714576 rs7517873 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 941 chr1 46722388 46722389 rs9793263 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2204.000000,2804.000000, 0.440096,0.559904, maf-5-some-pop,maf-5-all-pops 941 chr1 46722938 46722939 rs17102086 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1002.000000,4006.000000, 0.200080,0.799920, maf-5-some-pop 941 chr1 46726056 46726057 rs2295465 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP,YUSUKE, 2 A,C, 4028.000000,980.000000, 0.804313,0.195687, maf-5-some-pop 941 chr1 46730397 46730398 rs12410307 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 941 chr1 46733104 46733105 rs17102091 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop 941 chr1 46746163 46746164 rs11542623 0 + C C C/T genomic single unknown 0 0 missense exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP, 2 C,T, 4077.000000,931.000000, 0.814097,0.185903, maf-5-some-pop 941 chr1 46750698 46750699 rs1150065 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 152.000000,4856.000000,4856.000000,152.000000, 0.015176,0.484824,0.484824,0.015176, maf-5-some-pop 941 chr1 46761388 46761389 rs6676038 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 941 chr1 46761495 46761496 rs10890388 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3636.000000,1372.000000, 0.726038,0.273962, maf-5-some-pop,maf-5-all-pops 941 chr1 46781601 46781602 rs4660921 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1720.000000,3288.000000, 0.343450,0.656550, maf-5-some-pop 941 chr1 46782191 46782192 rs17102133 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 942 chr1 46810529 46810530 rs3737744 0 - A A C/T genomic single unknown 0 0 ncRNA,missense exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BGI,BL,CGAP-GAI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3483.000000,1525.000000,1525.000000,3483.000000, 0.347744,0.152256,0.152256,0.347744, maf-5-some-pop,genotype-conflict 942 chr1 46810762 46810763 rs17102152 0 + C C A/C genomic single unknown 0 0 intron,ncRNA,missense exact 1 10 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 A,C, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 942 chr1 46810841 46810842 rs6684274 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop 942 chr1 46811026 46811027 rs6659228 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 942 chr1 46813266 46813267 rs4660345 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 942 chr1 46813966 46813967 rs17361805 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4344.000000,664.000000, 0.867412,0.132588, maf-5-some-pop 942 chr1 46818835 46818836 rs12385696 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 942 chr1 46818920 46818921 rs12385693 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 942 chr1 46828733 46828734 rs41534051 0 - T T A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4349.000000,659.000000,659.000000,4349.000000, 0.434205,0.065795,0.065795,0.434205, maf-5-some-pop 942 chr1 46830429 46830430 rs10252 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2096.000000,2912.000000, 0.418530,0.581470, maf-5-some-pop,maf-5-all-pops 942 chr1 46830446 46830447 rs12062 0 + A A A/C genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 4348.000000,660.000000, 0.868211,0.131789, maf-5-some-pop 942 chr1 46832533 46832534 rs17357759 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,genotype-conflict 942 chr1 46834081 46834082 rs11804982 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop 942 chr1 46834774 46834775 rs17361887 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 548.000000,4460.000000, 0.109425,0.890575, maf-5-some-pop 942 chr1 46844529 46844530 rs6695043 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop,genotype-conflict 942 chr1 46850556 46850557 rs7522048 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,WI_SSAHASNP, 2 C,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 942 chr1 46858733 46858734 rs1984490 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4366.000000,642.000000,642.000000,4366.000000, 0.435903,0.064097,0.064097,0.435903, maf-5-some-pop 942 chr1 46861906 46861907 rs2145408 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1387.000000,3621.000000,3621.000000,1387.000000, 0.138478,0.361522,0.361522,0.138478, maf-5-some-pop,maf-5-all-pops 942 chr1 46865039 46865040 rs4141964 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 2734.000000,2274.000000,2274.000000,2734.000000, 0.272963,0.227037,0.227037,0.272963, maf-5-some-pop,maf-5-all-pops 942 chr1 46873902 46873903 rs873978 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 737.000000,4271.000000,4271.000000,737.000000, 0.073582,0.426418,0.426418,0.073582, maf-5-some-pop,genotype-conflict 942 chr1 46881352 46881353 rs324425 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 116.000000,4892.000000,4892.000000,116.000000, 0.011581,0.488419,0.488419,0.011581, maf-5-some-pop,genotype-conflict 942 chr1 46885103 46885104 rs324423 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 86.000000,4922.000000,4922.000000,86.000000, 0.008586,0.491414,0.491414,0.008586, maf-5-some-pop 942 chr1 46895640 46895641 rs1571138 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1389.000000,3619.000000, 0.277356,0.722644, maf-5-some-pop,maf-5-all-pops 942 chr1 46901046 46901047 rs3737742 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BGI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 4780.000000,228.000000,228.000000,4780.000000, 0.477236,0.022764,0.022764,0.477236, maf-5-some-pop,genotype-conflict 942 chr1 46901545 46901546 rs1150066 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3390.000000,1618.000000,1618.000000,3390.000000, 0.338458,0.161542,0.161542,0.338458, maf-5-some-pop,maf-5-all-pops,genotype-conflict 942 chr1 46902460 46902461 rs661902 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2087.000000,2921.000000,2921.000000,2087.000000, 0.208367,0.291633,0.291633,0.208367, maf-5-some-pop,maf-5-all-pops 942 chr1 46905066 46905067 rs619512 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,WI_SSAHASNP, 4 A,C,G,T, 4793.000000,215.000000,215.000000,4793.000000, 0.478534,0.021466,0.021466,0.478534, maf-5-some-pop,genotype-conflict 942 chr1 46905801 46905802 rs11211276 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 3949.000000,1059.000000, 0.788538,0.211462, maf-5-some-pop,maf-5-all-pops 942 chr1 46906143 46906144 rs12409747 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4157.000000,851.000000, 0.830072,0.169928, maf-5-some-pop,genotype-conflict 942 chr1 46911920 46911921 rs1158942 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 C,G, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop 942 chr1 46920086 46920087 rs7542528 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop,genotype-conflict 942 chr1 46920330 46920331 rs7532468 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop 943 chr1 46925593 46925594 rs10890398 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 46936422 46936423 rs10890401 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 882.000000,4126.000000, 0.176118,0.823882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 46937154 46937155 rs4660937 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2690.000000,2318.000000, 0.537141,0.462859, maf-5-some-pop,maf-5-all-pops 943 chr1 46939998 46939999 rs11211287 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 898.000000,4110.000000, 0.179313,0.820687, maf-5-some-pop 943 chr1 46940088 46940089 rs11211288 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4032.000000,976.000000, 0.805112,0.194888, maf-5-some-pop 943 chr1 46940359 46940360 rs7517290 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 943 chr1 46949070 46949071 rs1886118 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 85.000000,4923.000000,4923.000000,85.000000, 0.008486,0.491514,0.491514,0.008486, maf-5-some-pop 943 chr1 46954586 46954587 rs1998545 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1511.000000,3497.000000,3497.000000,1511.000000, 0.150859,0.349141,0.349141,0.150859, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 46957259 46957260 rs753209 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 588.000000,4420.000000,4420.000000,588.000000, 0.058706,0.441294,0.441294,0.058706, maf-5-some-pop 943 chr1 46960552 46960553 rs11211292 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,genotype-conflict 943 chr1 46961913 46961914 rs12562748 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop 943 chr1 46967738 46967739 rs12064819 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 237.000000,4771.000000, 0.047324,0.952676, maf-5-some-pop 943 chr1 46967889 46967890 rs2025384 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1413.000000,3595.000000,3595.000000,1413.000000, 0.141074,0.358926,0.358926,0.141074, maf-5-some-pop,maf-5-all-pops 943 chr1 46969017 46969018 rs2025382 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1417.000000,3591.000000,3591.000000,1417.000000, 0.141474,0.358526,0.358526,0.141474, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 46972957 46972958 rs35270239 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3675.000000,1333.000000, 0.733826,0.266174, maf-5-some-pop,maf-5-all-pops 943 chr1 46973074 46973075 rs11803942 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop 943 chr1 46975772 46975773 rs6683116 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3190.000000,1818.000000, 0.636981,0.363019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 46976529 46976530 rs12045200 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop,maf-5-all-pops 943 chr1 46978075 46978076 rs11211298 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,C, 284.000000,4724.000000, 0.056709,0.943291, maf-5-some-pop 943 chr1 46981144 46981145 rs1570570 0 - G G C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 943 chr1 46982454 46982455 rs942249 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3017.000000,1991.000000,1991.000000,3017.000000, 0.301218,0.198782,0.198782,0.301218, maf-5-some-pop,genotype-conflict 943 chr1 46985191 46985192 rs1745371 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop,maf-5-all-pops 943 chr1 46988374 46988375 rs7525300 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4573.000000,435.000000, 0.913139,0.086861, maf-5-some-pop 943 chr1 46988612 46988613 rs11211299 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 943 chr1 46989471 46989472 rs17102247 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop,genotype-conflict 943 chr1 46989530 46989531 rs17102252 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop,genotype-conflict 943 chr1 46989741 46989742 rs1267305 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 328.000000,4680.000000,4680.000000,328.000000, 0.032748,0.467252,0.467252,0.032748, maf-5-some-pop,genotype-conflict 943 chr1 46990043 46990044 rs12408243 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3839.000000,1169.000000, 0.766573,0.233427, maf-5-some-pop,genotype-conflict 943 chr1 46990456 46990457 rs1267303 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3022.000000,1986.000000,1986.000000,3022.000000, 0.301717,0.198283,0.198283,0.301717, maf-5-some-pop,maf-5-all-pops 943 chr1 46992852 46992853 rs1267301 0 - C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 46997126 46997127 rs2404611 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 943 chr1 46998008 46998009 rs7542296 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 943 chr1 46999757 46999758 rs12138736 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2700.000000,2308.000000, 0.539137,0.460863, maf-5-some-pop,maf-5-all-pops 943 chr1 47000565 47000566 rs3737741 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2309.000000,2699.000000,2699.000000,2309.000000, 0.230531,0.269469,0.269469,0.230531, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 47000995 47000996 rs11588450 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1386.000000,3622.000000, 0.276757,0.723243, maf-5-some-pop,maf-5-all-pops 943 chr1 47007843 47007844 rs2476163 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops,genotype-conflict 943 chr1 47007986 47007987 rs2486166 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1913.000000,3095.000000, 0.381989,0.618011, maf-5-some-pop,maf-5-all-pops 943 chr1 47012143 47012144 rs885127 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2463.000000,2545.000000, 0.491813,0.508187, maf-5-some-pop 943 chr1 47012701 47012702 rs942079 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 449.000000,4559.000000, 0.089657,0.910343, maf-5-some-pop,genotype-conflict 943 chr1 47015072 47015073 rs1258042 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop,genotype-conflict 943 chr1 47022759 47022760 rs1258050 0 + A A A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,C, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop,genotype-conflict 943 chr1 47024925 47024926 rs6429603 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 G,T, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 943 chr1 47026588 47026589 rs7522397 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4973.000000,35.000000, 0.993011,0.006989, 943 chr1 47033848 47033849 rs2181414 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2643.000000,2365.000000, 0.527756,0.472244, maf-5-some-pop,genotype-conflict 943 chr1 47034927 47034928 rs1933934 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1628.000000,3380.000000, 0.325080,0.674920, maf-5-some-pop,maf-5-all-pops 943 chr1 47035642 47035643 rs1054743 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,SI_EXO,SSMP,YUSUKE, 2 C,T, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop 943 chr1 47036075 47036076 rs3766239 0 - G G C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 95.000000,4913.000000,4913.000000,95.000000, 0.009485,0.490515,0.490515,0.009485, maf-5-some-pop 943 chr1 47036314 47036315 rs3766238 0 - A A A/T genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 943 chr1 47049048 47049049 rs17102303 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 944 chr1 47055338 47055339 rs1258022 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 516.000000,4492.000000,4492.000000,516.000000, 0.051518,0.448482,0.448482,0.051518, maf-5-some-pop 944 chr1 47055991 47055992 rs956527 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3744.000000,1264.000000,1264.000000,3744.000000, 0.373802,0.126198,0.126198,0.373802, maf-5-some-pop 944 chr1 47056346 47056347 rs3766231 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1230.000000,3778.000000,3778.000000,1230.000000, 0.122804,0.377196,0.377196,0.122804, maf-5-some-pop,maf-5-all-pops 944 chr1 47067272 47067273 rs4660357 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1819.000000,3189.000000, 0.363219,0.636781, maf-5-some-pop 944 chr1 47068676 47068677 rs10890406 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1684.000000,3324.000000, 0.336262,0.663738, maf-5-some-pop 944 chr1 47069844 47069845 rs11211322 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 944 chr1 47074140 47074141 rs12093618 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 944 chr1 47076980 47076981 rs942083 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 944 chr1 47084863 47084864 rs11211329 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop 944 chr1 47088115 47088116 rs6669274 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2569.000000,2439.000000, 0.512979,0.487021, maf-5-some-pop,maf-5-all-pops 944 chr1 47089616 47089617 rs6675720 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2188.000000,2820.000000, 0.436901,0.563099, maf-5-some-pop,maf-5-all-pops 944 chr1 47091148 47091149 rs4518838 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2630.000000,2378.000000, 0.525160,0.474840, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47096646 47096647 rs2181412 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 944 chr1 47097807 47097808 rs1258073 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4869.000000,139.000000,139.000000,4869.000000, 0.486122,0.013878,0.013878,0.486122, maf-5-some-pop,maf-5-all-pops 944 chr1 47098047 47098048 rs1258072 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 932.000000,4076.000000,4076.000000,932.000000, 0.093051,0.406949,0.406949,0.093051, maf-5-some-pop 944 chr1 47101116 47101117 rs2181411 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SI_EXO,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 944 chr1 47107318 47107319 rs1258058 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1249.000000,3759.000000,3759.000000,1249.000000, 0.124700,0.375300,0.375300,0.124700, maf-5-some-pop,genotype-conflict 944 chr1 47107389 47107390 rs744096 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3557.000000,1451.000000,1451.000000,3557.000000, 0.355132,0.144868,0.144868,0.355132, maf-5-some-pop,maf-5-all-pops 944 chr1 47108827 47108828 rs736188 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1244.000000,3764.000000,3764.000000,1244.000000, 0.124201,0.375799,0.375799,0.124201, maf-5-some-pop 944 chr1 47109250 47109251 rs1273237 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1152.000000,3856.000000, 0.230032,0.769968, maf-5-some-pop 944 chr1 47109327 47109328 rs1933932 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 931.000000,4077.000000, 0.185903,0.814097, maf-5-some-pop 944 chr1 47115050 47115051 rs2486161 0 - C C A/G genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1247.000000,3761.000000,3761.000000,1247.000000, 0.124501,0.375499,0.375499,0.124501, maf-5-some-pop 944 chr1 47116622 47116623 rs12087698 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 944 chr1 47120672 47120673 rs629412 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3755.000000,1253.000000, 0.749800,0.250200, maf-5-some-pop,genotype-conflict 944 chr1 47121418 47121419 rs11211334 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1368.000000,3640.000000, 0.273163,0.726837, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47121501 47121502 rs631368 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1152.000000,3856.000000,3856.000000,1152.000000, 0.115016,0.384984,0.384984,0.115016, maf-5-some-pop 944 chr1 47124478 47124479 rs611468 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2310.000000,2698.000000, 0.461262,0.538738, maf-5-some-pop,maf-5-all-pops 944 chr1 47124998 47124999 rs7354865 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3558.000000,1450.000000, 0.710463,0.289537, maf-5-some-pop,maf-5-all-pops 944 chr1 47125184 47125185 rs682000 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 89.000000,4919.000000,4919.000000,89.000000, 0.008886,0.491114,0.491114,0.008886, maf-5-some-pop 944 chr1 47127170 47127171 rs654509 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 944 chr1 47134320 47134321 rs12094663 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2702.000000,2306.000000, 0.539537,0.460463, maf-5-some-pop,maf-5-all-pops 944 chr1 47139102 47139103 rs1025806 0 - C C A/G genomic single unknown 0 0 near-gene-5,missense exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1333.000000,3675.000000,3675.000000,1333.000000, 0.133087,0.366913,0.366913,0.133087, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47139579 47139580 rs601060 0 - C C C/G genomic single unknown 0 0 intron,near-gene-3,near-gene-5 exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 944 chr1 47139674 47139675 rs625590 0 - C C A/G genomic single unknown 0 0 intron,near-gene-3,near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2701.000000,2307.000000,2307.000000,2701.000000, 0.269669,0.230331,0.230331,0.269669, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47146407 47146408 rs12048954 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1273.000000,3735.000000, 0.254193,0.745807, maf-5-some-pop 944 chr1 47146532 47146533 rs7412469 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1342.000000,3666.000000, 0.267971,0.732029, maf-5-some-pop,maf-5-all-pops 944 chr1 47147727 47147728 rs2275380 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1353.000000,3655.000000,3655.000000,1353.000000, 0.135084,0.364916,0.364916,0.135084, maf-5-some-pop,maf-5-all-pops 944 chr1 47149793 47149794 rs1890473 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4136.000000,872.000000,872.000000,4136.000000, 0.412939,0.087061,0.087061,0.412939, maf-5-some-pop,genotype-conflict 944 chr1 47152519 47152520 rs6665021 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CORNELL,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ, 2 A,G, 4970.000000,38.000000, 0.992412,0.007588, maf-5-some-pop 944 chr1 47153546 47153547 rs2119301 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1371.000000,3637.000000,3637.000000,1371.000000, 0.136881,0.363119,0.363119,0.136881, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47155097 47155098 rs2241863 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 838.000000,4170.000000,4170.000000,838.000000, 0.083666,0.416334,0.416334,0.083666, maf-5-some-pop 944 chr1 47155371 47155372 rs17102441 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 A,C, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop 944 chr1 47157260 47157261 rs3766219 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 944 chr1 47157305 47157306 rs3766218 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4167.000000,841.000000,841.000000,4167.000000, 0.416034,0.083966,0.083966,0.416034, maf-5-some-pop 944 chr1 47158485 47158486 rs4660956 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop 944 chr1 47159108 47159109 rs3766217 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1333.000000,3675.000000,3675.000000,1333.000000, 0.133087,0.366913,0.366913,0.133087, maf-5-some-pop,maf-5-all-pops 944 chr1 47164605 47164606 rs6671124 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 2198.000000,2810.000000, 0.438898,0.561102, maf-5-some-pop,maf-5-all-pops 944 chr1 47167074 47167075 rs1440487 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 819.000000,4189.000000,4189.000000,819.000000, 0.081769,0.418231,0.418231,0.081769, maf-5-some-pop 944 chr1 47168051 47168052 rs12026027 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 944 chr1 47168460 47168461 rs11801744 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop 944 chr1 47171231 47171232 rs10890411 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2514.000000,2494.000000, 0.501997,0.498003, maf-5-some-pop,maf-5-all-pops 944 chr1 47174327 47174328 rs10749863 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop,genotype-conflict 944 chr1 47174654 47174655 rs17102458 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 47.000000,4961.000000, 0.009385,0.990615, maf-5-some-pop 944 chr1 47176605 47176606 rs10158678 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2405.000000,2603.000000, 0.480232,0.519768, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47178064 47178065 rs12071983 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,genotype-conflict 944 chr1 47184180 47184181 rs3766212 0 - C C A/G genomic single unknown 0 0 untranslated-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2610.000000,2398.000000,2398.000000,2610.000000, 0.260583,0.239417,0.239417,0.260583, maf-5-some-pop,maf-5-all-pops,genotype-conflict 944 chr1 47184195 47184196 rs3766211 0 - A A C/T genomic single unknown 0 0 untranslated-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2398.000000,2610.000000,2610.000000,2398.000000, 0.239417,0.260583,0.260583,0.239417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47188149 47188150 rs4660957 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3570.000000,1438.000000, 0.712859,0.287141, maf-5-some-pop,maf-5-all-pops 945 chr1 47193057 47193058 rs1440491 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1355.000000,3653.000000,3653.000000,1355.000000, 0.135284,0.364716,0.364716,0.135284, maf-5-some-pop,maf-5-all-pops 945 chr1 47205549 47205550 rs1440490 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3652.000000,1356.000000,1356.000000,3652.000000, 0.364617,0.135383,0.135383,0.364617, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47208080 47208081 rs1971518 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3618.000000,1390.000000,1390.000000,3618.000000, 0.361222,0.138778,0.138778,0.361222, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47211669 47211670 rs635561 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2732.000000,2276.000000,2276.000000,2732.000000, 0.272764,0.227236,0.227236,0.272764, maf-5-some-pop,maf-5-all-pops 945 chr1 47212008 47212009 rs2993410 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2527.000000,2481.000000, 0.504593,0.495407, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47212147 47212148 rs17102489 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop 945 chr1 47213385 47213386 rs594387 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2198.000000,2810.000000,2810.000000,2198.000000, 0.219449,0.280551,0.280551,0.219449, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47213952 47213953 rs11582403 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop 945 chr1 47217905 47217906 rs614078 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SHGC/AFFYMETRIX,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1922.000000,3086.000000,3086.000000,1922.000000, 0.191893,0.308107,0.308107,0.191893, maf-5-some-pop,maf-5-all-pops 945 chr1 47219822 47219823 rs720413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3012.000000,1996.000000, 0.601438,0.398562, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47220058 47220059 rs6662321 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 945 chr1 47223893 47223894 rs17102513 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 945 chr1 47225483 47225484 rs11211355 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop 945 chr1 47225885 47225886 rs12082811 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4009.000000,999.000000, 0.800519,0.199481, maf-5-some-pop,maf-5-all-pops 945 chr1 47230162 47230163 rs17102518 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 945 chr1 47233732 47233733 rs17449603 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,genotype-conflict 945 chr1 47234334 47234335 rs11583588 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop,microattr-tpa 945 chr1 47234549 47234550 rs17102519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 945 chr1 47255602 47255603 rs17102525 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 945 chr1 47258218 47258219 rs7540241 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1118.000000,3890.000000, 0.223243,0.776757, maf-5-some-pop,maf-5-all-pops 945 chr1 47264204 47264205 rs632233 0 - C C A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,RIKENSNPRC,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3045.000000,1963.000000,1963.000000,3045.000000, 0.304014,0.195986,0.195986,0.304014, maf-5-some-pop,maf-5-all-pops 945 chr1 47265272 47265273 rs3766209 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,CGM_KYOTO,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,RIKENSNPRC,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 416.000000,4592.000000,4592.000000,416.000000, 0.041534,0.458466,0.458466,0.041534, maf-5-some-pop 945 chr1 47266421 47266422 rs837398 0 - T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 945 chr1 47268040 47268041 rs681840 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,RIKENSNPRC,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3737.000000,1271.000000,1271.000000,3737.000000, 0.373103,0.126897,0.126897,0.373103, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47269337 47269338 rs837395 0 - T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,RIKENSNPRC,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47269983 47269984 rs1105456 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 440.000000,4568.000000,4568.000000,440.000000, 0.043930,0.456070,0.456070,0.043930, maf-5-some-pop 945 chr1 47272184 47272185 rs2405335 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,RIKENSNPRC,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 1458.000000,3550.000000, 0.291134,0.708866, maf-5-some-pop,maf-5-all-pops 945 chr1 47275240 47275241 rs2065996 0 - G G C/T genomic single unknown 0 0 intron exact 1 MixedObserved,InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 949.000000,4059.000000,4059.000000,949.000000, 0.094748,0.405252,0.405252,0.094748, maf-5-some-pop,genotype-conflict 945 chr1 47276241 47276242 rs11211366 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3649.000000,1359.000000, 0.728634,0.271366, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47280549 47280550 rs11576162 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop 945 chr1 47280858 47280859 rs2297810 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,RIKENSNPRC,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1356.000000,3652.000000,3652.000000,1356.000000, 0.135383,0.364617,0.364617,0.135383, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47280883 47280884 rs4646491 0 + C C C/T genomic single unknown 0 0 missense exact 1 25 1000GENOMES,ABI,AFFY,CGM_KYOTO,CLINSEQ_SNP,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,RIKENSNPRC,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop,genotype-conflict 945 chr1 47281826 47281827 rs3766197 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 904.000000,4104.000000,4104.000000,904.000000, 0.090256,0.409744,0.409744,0.090256, maf-5-some-pop,maf-5-all-pops,genotype-conflict 945 chr1 47289399 47289400 rs17102609 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop 945 chr1 47297052 47297053 rs12063040 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 945 chr1 47300655 47300656 rs6701665 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 A,G, 2166.000000,2842.000000, 0.432508,0.567492, maf-5-some-pop,maf-5-all-pops 945 chr1 47300978 47300979 rs9429098 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2658.000000,2350.000000, 0.530751,0.469249, maf-5-some-pop,maf-5-all-pops 945 chr1 47305190 47305191 rs1890246 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 734.000000,4274.000000,4274.000000,734.000000, 0.073283,0.426717,0.426717,0.073283, maf-5-some-pop 945 chr1 47311534 47311535 rs11211378 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop,genotype-conflict 946 chr1 47318399 47318400 rs17102644 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 686.000000,4322.000000, 0.136981,0.863019, maf-5-some-pop 946 chr1 47321981 47321982 rs6665009 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop,genotype-conflict 946 chr1 47397354 47397355 rs9333021 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PGA-UW-FHCRC, 4 A,C,G,T, 44.000000,4964.000000,4964.000000,44.000000, 0.004393,0.495607,0.495607,0.004393, maf-5-some-pop 946 chr1 47398742 47398743 rs3890011 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 946 chr1 47398912 47398913 rs3890010 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 874.000000,4134.000000,4134.000000,874.000000, 0.087260,0.412740,0.412740,0.087260, maf-5-some-pop 946 chr1 47402837 47402838 rs9333002 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 4880.000000,128.000000,128.000000,4880.000000, 0.487220,0.012780,0.012780,0.487220, maf-5-some-pop,genotype-conflict 946 chr1 47404185 47404186 rs9332998 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 3991.000000,1017.000000,1017.000000,3991.000000, 0.398462,0.101538,0.101538,0.398462, maf-5-some-pop,maf-5-all-pops,microattr-tpa 946 chr1 47404865 47404866 rs9332997 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 4 A,C,G,T, 128.000000,4880.000000,4880.000000,128.000000, 0.012780,0.487220,0.487220,0.012780, maf-5-some-pop 946 chr1 47406177 47406178 rs9332982 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 551.000000,4457.000000,4457.000000,551.000000, 0.055012,0.444988,0.444988,0.055012, maf-5-some-pop,genotype-conflict 946 chr1 47413785 47413786 rs11211406 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2861.000000,2147.000000, 0.571286,0.428714, maf-5-some-pop,maf-5-all-pops,genotype-conflict 946 chr1 47417392 47417393 rs10890429 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1138.000000,3870.000000, 0.227236,0.772764, maf-5-some-pop,maf-5-all-pops 946 chr1 47418425 47418426 rs12126734 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop,maf-5-all-pops 946 chr1 47432869 47432870 rs1502931 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 947 chr1 47449064 47449065 rs11211414 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3694.000000,1314.000000, 0.737620,0.262380, maf-5-some-pop,maf-5-all-pops 947 chr1 47461468 47461469 rs2405585 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 618.000000,4390.000000, 0.123403,0.876597, maf-5-some-pop 947 chr1 47462818 47462819 rs12092170 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop 947 chr1 47485171 47485172 rs9326151 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 947 chr1 47485823 47485824 rs1502909 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 947 chr1 47485890 47485891 rs1502908 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3233.000000,1775.000000,1775.000000,3233.000000, 0.322784,0.177216,0.177216,0.322784, maf-5-some-pop 947 chr1 47486391 47486392 rs10890445 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2176.000000,2832.000000, 0.434505,0.565495, maf-5-some-pop,maf-5-all-pops,genotype-conflict 947 chr1 47493583 47493584 rs9793716 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2278.000000,2730.000000, 0.454872,0.545128, maf-5-some-pop 947 chr1 47496737 47496738 rs9793989 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4376.000000,632.000000, 0.873802,0.126198, maf-5-some-pop,maf-5-all-pops 947 chr1 47496982 47496983 rs12041262 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2290.000000,2718.000000, 0.457268,0.542732, maf-5-some-pop,maf-5-all-pops 947 chr1 47497036 47497037 rs11211420 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,maf-5-all-pops 947 chr1 47498578 47498579 rs17102978 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop 947 chr1 47502482 47502483 rs11211422 0 + G G A/G genomic single unknown 0 0 intron exact 1 MixedObserved 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2917.000000,2091.000000, 0.582468,0.417532, maf-5-some-pop,genotype-conflict 947 chr1 47504716 47504717 rs2292059 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop,genotype-conflict 947 chr1 47517590 47517591 rs11211428 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 2375.000000,2633.000000, 0.474241,0.525759, maf-5-some-pop,maf-5-all-pops 947 chr1 47517959 47517960 rs12140581 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop 947 chr1 47528382 47528383 rs9729443 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2922.000000,2086.000000, 0.583466,0.416534, maf-5-some-pop,maf-5-all-pops 947 chr1 47533836 47533837 rs9793202 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2102.000000,2906.000000, 0.419728,0.580272, maf-5-some-pop 947 chr1 47561117 47561118 rs11211439 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop 947 chr1 47572501 47572502 rs1847225 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3174.000000,1834.000000,1834.000000,3174.000000, 0.316893,0.183107,0.183107,0.316893, maf-5-some-pop,maf-5-all-pops 947 chr1 47573412 47573413 rs11211451 0 + A A A/C genomic single unknown 0 0 intron exact 1 MixedObserved 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop 947 chr1 47573979 47573980 rs10890459 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1945.000000,3063.000000, 0.388379,0.611621, maf-5-some-pop,genotype-conflict 947 chr1 47574649 47574650 rs12734327 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop 947 chr1 47576735 47576736 rs1967757 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 947 chr1 47578470 47578471 rs7512729 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 2043.000000,2965.000000, 0.407947,0.592053, maf-5-some-pop,maf-5-all-pops 948 chr1 47594934 47594935 rs12564103 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 568.000000,4440.000000, 0.113419,0.886581, maf-5-some-pop 948 chr1 47595189 47595190 rs3850876 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1760.000000,3248.000000,3248.000000,1760.000000, 0.175719,0.324281,0.324281,0.175719, maf-5-some-pop 948 chr1 47598031 47598032 rs11211464 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2694.000000,2314.000000, 0.537939,0.462061, maf-5-some-pop 948 chr1 47604008 47604009 rs4926919 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 749.000000,4259.000000, 0.149561,0.850439, maf-5-some-pop 948 chr1 47605998 47605999 rs17102891 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,genotype-conflict 948 chr1 47606516 47606517 rs17109741 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 C,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 948 chr1 47607850 47607851 rs2056899 0 - A A A/T genomic single unknown 0 0 missense exact 1 26 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 948 chr1 47608196 47608197 rs2056898 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3281.000000,1727.000000,1727.000000,3281.000000, 0.327576,0.172424,0.172424,0.327576, maf-5-some-pop,maf-5-all-pops 948 chr1 47615898 47615899 rs11211470 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2888.000000,2120.000000, 0.576677,0.423323, maf-5-some-pop,maf-5-all-pops 948 chr1 47618713 47618714 rs11211471 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2986.000000,2022.000000, 0.596246,0.403754, maf-5-some-pop 948 chr1 47627245 47627246 rs3737772 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3947.000000,1061.000000,1061.000000,3947.000000, 0.394069,0.105931,0.105931,0.394069, maf-5-some-pop,maf-5-all-pops 948 chr1 47641040 47641041 rs2798353 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3797.000000,1211.000000, 0.758187,0.241813, maf-5-some-pop 948 chr1 47642229 47642230 rs2742079 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2043.000000,2965.000000,2965.000000,2043.000000, 0.203974,0.296026,0.296026,0.203974, maf-5-some-pop 948 chr1 47644901 47644902 rs2494248 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2199.000000,2809.000000,2809.000000,2199.000000, 0.219549,0.280451,0.280451,0.219549, maf-5-some-pop,genotype-conflict 948 chr1 47657140 47657141 rs12184246 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,C, 2018.000000,2990.000000, 0.402955,0.597045, maf-5-some-pop,maf-5-all-pops,genotype-conflict 948 chr1 47659444 47659445 rs7545034 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1282.000000,3726.000000, 0.255990,0.744010, maf-5-some-pop,genotype-conflict 948 chr1 47666145 47666146 rs17103015 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 430.000000,4578.000000, 0.085863,0.914137, maf-5-some-pop 948 chr1 47666545 47666546 rs17103016 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 304.000000,4704.000000, 0.060703,0.939297, maf-5-some-pop,genotype-conflict 948 chr1 47673295 47673296 rs13373881 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,genotype-conflict 948 chr1 47673710 47673711 rs17103032 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop 948 chr1 47675871 47675872 rs17103038 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 C,T, 46.000000,4962.000000, 0.009185,0.990815, maf-5-some-pop 948 chr1 47676232 47676233 rs741959 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3129.000000,1879.000000,1879.000000,3129.000000, 0.312400,0.187600,0.187600,0.312400, maf-5-some-pop,genotype-conflict 948 chr1 47677111 47677112 rs1419051 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2370.000000,2638.000000,2638.000000,2370.000000, 0.236621,0.263379,0.263379,0.236621, maf-5-some-pop,maf-5-all-pops 948 chr1 47678354 47678355 rs2758743 0 - G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 12 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 332.000000,4676.000000,4676.000000,332.000000, 0.033147,0.466853,0.466853,0.033147, maf-5-some-pop,genotype-conflict 948 chr1 47683463 47683464 rs2070930 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,YUSUKE, 4 A,C,G,T, 635.000000,4373.000000,4373.000000,635.000000, 0.063399,0.436601,0.436601,0.063399, maf-5-some-pop 948 chr1 47683606 47683607 rs2070929 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 948 chr1 47687083 47687084 rs2249665 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 648.000000,4360.000000,4360.000000,648.000000, 0.064696,0.435304,0.435304,0.064696, maf-5-some-pop 948 chr1 47693219 47693220 rs11211480 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3602.000000,1406.000000, 0.719249,0.280751, maf-5-some-pop 948 chr1 47693376 47693377 rs2250495 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2510.000000,2498.000000,2498.000000,2510.000000, 0.250599,0.249401,0.249401,0.250599, maf-5-some-pop,maf-5-all-pops 948 chr1 47693980 47693981 rs7534271 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3314.000000,1694.000000, 0.661741,0.338259, maf-5-some-pop 948 chr1 47694166 47694167 rs11211481 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3455.000000,1553.000000, 0.689896,0.310104, maf-5-some-pop 948 chr1 47698702 47698703 rs2798349 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,genotype-conflict 948 chr1 47707434 47707435 rs11211483 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 629.000000,4379.000000, 0.125599,0.874401, maf-5-some-pop,genotype-conflict 948 chr1 47708111 47708112 rs10890472 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3211.000000,1797.000000, 0.641174,0.358826, maf-5-some-pop,genotype-conflict 948 chr1 47708368 47708369 rs11211484 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,maf-5-all-pops 949 chr1 47713626 47713627 rs10489596 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 4 A,C,G,T, 4667.000000,341.000000,341.000000,4667.000000, 0.465954,0.034046,0.034046,0.465954, maf-5-some-pop 949 chr1 47717237 47717238 rs3766317 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EXOME_CHIP,GENEREVIEWS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SEATTLESEQ,YUSUKE, 4 A,C,G,T, 5.000000,5003.000000,5003.000000,5.000000, 0.000499,0.499501,0.499501,0.000499, clinically-assoc,submitted-by-lsdb 949 chr1 47718357 47718358 rs1028646 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1966.000000,3042.000000,3042.000000,1966.000000, 0.196286,0.303714,0.303714,0.196286, maf-5-some-pop,genotype-conflict 949 chr1 47720954 47720955 rs11211493 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 49.000000,4959.000000, 0.009784,0.990216, maf-5-some-pop 949 chr1 47723823 47723824 rs12123358 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4115.000000,893.000000, 0.821685,0.178315, maf-5-some-pop 949 chr1 47724165 47724166 rs6588095 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop,genotype-conflict 949 chr1 47727946 47727947 rs13374382 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 4127.000000,881.000000, 0.824081,0.175919, maf-5-some-pop,genotype-conflict 949 chr1 47732377 47732378 rs11211500 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4115.000000,893.000000, 0.821685,0.178315, maf-5-some-pop 949 chr1 47742725 47742726 rs2821096 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3074.000000,1934.000000,1934.000000,3074.000000, 0.306909,0.193091,0.193091,0.306909, maf-5-some-pop 949 chr1 47743188 47743189 rs11211503 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 346.000000,4662.000000, 0.069090,0.930911, maf-5-some-pop,genotype-conflict 949 chr1 47743489 47743490 rs6588196 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4128.000000,880.000000, 0.824281,0.175719, maf-5-some-pop 949 chr1 47745505 47745506 rs7532148 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1339.000000,3669.000000, 0.267372,0.732628, maf-5-some-pop,maf-5-all-pops 949 chr1 47751011 47751012 rs11578112 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 386.000000,4622.000000, 0.077077,0.922923, maf-5-some-pop 949 chr1 47760968 47760969 rs11211508 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1334.000000,3674.000000, 0.266374,0.733626, maf-5-some-pop,maf-5-all-pops 949 chr1 47763206 47763207 rs11587014 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4018.000000,990.000000, 0.802316,0.197684, maf-5-some-pop,genotype-conflict 949 chr1 47766603 47766604 rs9436412 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop 949 chr1 47766646 47766647 rs12141060 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3498.000000,1510.000000, 0.698482,0.301518, maf-5-some-pop 949 chr1 47766942 47766943 rs6697248 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1588.000000,3420.000000, 0.317093,0.682907, maf-5-some-pop,maf-5-all-pops 949 chr1 47768072 47768073 rs3122606 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,C, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop 949 chr1 47768742 47768743 rs6703956 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 1509.000000,3499.000000, 0.301318,0.698682, maf-5-some-pop 949 chr1 47779935 47779936 rs13375432 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 949 chr1 47782118 47782119 rs11211513 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1588.000000,3420.000000, 0.317093,0.682907, maf-5-some-pop,maf-5-all-pops 949 chr1 47792362 47792363 rs12732050 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3428.000000,1580.000000, 0.684505,0.315495, maf-5-some-pop 949 chr1 47797622 47797623 rs3925058 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3039.000000,1969.000000,1969.000000,3039.000000, 0.303415,0.196585,0.196585,0.303415, maf-5-some-pop 949 chr1 47798576 47798577 rs9988633 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 949 chr1 47806086 47806087 rs12123269 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 995.000000,4013.000000, 0.198682,0.801318, maf-5-some-pop 949 chr1 47820008 47820009 rs2622918 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 4 A,C,G,T, 4894.000000,114.000000,114.000000,4894.000000, 0.488618,0.011382,0.011382,0.488618, maf-5-some-pop 949 chr1 47820191 47820192 rs10789507 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3186.000000,1822.000000, 0.636182,0.363818, maf-5-some-pop,maf-5-all-pops,genotype-conflict 949 chr1 47837403 47837404 rs2622911 0 + C C A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 949 chr1 47840070 47840071 rs2622913 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 949 chr1 47840591 47840592 rs6656779 0 + A A A/G genomic single unknown 0 0 coding-synon,intron exact 1 15 1000GENOMES,AFFY,APPLERA_GI,BCM_SSAHASNP,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PHARMGKB_PPII,PJP,SEATTLESEQ,TISHKOFF, 2 A,G, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop 950 chr1 47851880 47851881 rs2406105 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3560.000000,1448.000000,1448.000000,3560.000000, 0.355431,0.144569,0.144569,0.355431, maf-5-some-pop,maf-5-all-pops 950 chr1 47857074 47857075 rs6662814 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2366.000000,2642.000000, 0.472444,0.527556, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47857621 47857622 rs2820982 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 950 chr1 47857734 47857735 rs2406102 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2809.000000,2199.000000,2199.000000,2809.000000, 0.280451,0.219549,0.219549,0.280451, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47858053 47858054 rs2820983 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2863.000000,2145.000000, 0.571685,0.428315, maf-5-some-pop,maf-5-all-pops 950 chr1 47861162 47861163 rs2622927 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1229.000000,3779.000000, 0.245407,0.754593, maf-5-some-pop 950 chr1 47867738 47867739 rs6699343 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2866.000000,2142.000000, 0.572284,0.427716, maf-5-some-pop,maf-5-all-pops 950 chr1 47867845 47867846 rs17103216 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4140.000000,868.000000, 0.826677,0.173323, maf-5-some-pop,genotype-conflict 950 chr1 47868004 47868005 rs11579058 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop 950 chr1 47869315 47869316 rs7555040 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop 950 chr1 47872077 47872078 rs12049416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 950 chr1 47874585 47874586 rs4603175 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3025.000000,1983.000000, 0.604034,0.395966, maf-5-some-pop,maf-5-all-pops 950 chr1 47874862 47874863 rs17103223 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 950 chr1 47875483 47875484 rs11577621 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1519.000000,3489.000000, 0.303315,0.696685, maf-5-some-pop,maf-5-all-pops 950 chr1 47875626 47875627 rs4926858 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4250.000000,758.000000, 0.848642,0.151358, maf-5-some-pop 950 chr1 47880277 47880278 rs11578776 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 950 chr1 47884228 47884229 rs11211533 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop 950 chr1 47884581 47884582 rs12122537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop,maf-5-all-pops 950 chr1 47891810 47891811 rs7525612 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, maf-5-some-pop 950 chr1 47894574 47894575 rs2405915 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1400.000000,3608.000000,3608.000000,1400.000000, 0.139776,0.360224,0.360224,0.139776, maf-5-some-pop,maf-5-all-pops 950 chr1 47907603 47907604 rs6697911 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop 950 chr1 47907661 47907662 rs1316443 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2646.000000,2362.000000, 0.528355,0.471645, maf-5-some-pop,maf-5-all-pops 950 chr1 47914862 47914863 rs6665067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4161.000000,847.000000, 0.830871,0.169129, maf-5-some-pop,genotype-conflict 950 chr1 47916916 47916917 rs17103251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop,genotype-conflict 950 chr1 47918820 47918821 rs527430 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 174.000000,4834.000000,4834.000000,174.000000, 0.017372,0.482628,0.482628,0.017372, maf-5-some-pop,microattr-tpa,genotype-conflict 950 chr1 47919007 47919008 rs4926871 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4226.000000,782.000000, 0.843850,0.156150, maf-5-some-pop 950 chr1 47922263 47922264 rs10890481 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1676.000000,3332.000000, 0.334665,0.665335, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47924274 47924275 rs497606 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1955.000000,3053.000000,3053.000000,1955.000000, 0.195188,0.304812,0.304812,0.195188, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47931819 47931820 rs17103260 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1195.000000,3813.000000, 0.238618,0.761382, maf-5-some-pop,maf-5-all-pops 950 chr1 47933093 47933094 rs524158 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 3069.000000,1939.000000,1939.000000,3069.000000, 0.306410,0.193590,0.193590,0.306410, maf-5-some-pop 950 chr1 47933362 47933363 rs2097 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 4 A,C,G,T, 864.000000,4144.000000,4144.000000,864.000000, 0.086262,0.413738,0.413738,0.086262, maf-5-some-pop,genotype-conflict 950 chr1 47938128 47938129 rs10789509 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop,genotype-conflict 950 chr1 47942421 47942422 rs545670 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 848.000000,4160.000000,4160.000000,848.000000, 0.084665,0.415335,0.415335,0.084665, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47947482 47947483 rs12145431 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 692.000000,4316.000000, 0.138179,0.861821, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47947740 47947741 rs6683032 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 953.000000,4055.000000, 0.190296,0.809704, maf-5-some-pop 950 chr1 47948617 47948618 rs7539808 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1848.000000,3160.000000, 0.369010,0.630990, maf-5-some-pop,maf-5-all-pops 950 chr1 47948763 47948764 rs2065945 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 951.000000,4057.000000,4057.000000,951.000000, 0.094948,0.405052,0.405052,0.094948, maf-5-some-pop,genotype-conflict 950 chr1 47948797 47948798 rs2065944 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1608.000000,3400.000000,3400.000000,1608.000000, 0.160543,0.339457,0.339457,0.160543, maf-5-some-pop,maf-5-all-pops 950 chr1 47951687 47951688 rs11800497 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3160.000000,1848.000000, 0.630990,0.369010, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47952662 47952663 rs517384 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 771.000000,4237.000000,4237.000000,771.000000, 0.076977,0.423023,0.423023,0.076977, maf-5-some-pop,maf-5-all-pops,genotype-conflict 950 chr1 47954510 47954511 rs12125691 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4072.000000,936.000000, 0.813099,0.186901, maf-5-some-pop 950 chr1 47955426 47955427 rs17371253 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4070.000000,938.000000, 0.812700,0.187300, maf-5-some-pop 950 chr1 47966057 47966058 rs7528714 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4106.000000,902.000000, 0.819888,0.180112, maf-5-some-pop,genotype-conflict 950 chr1 47966291 47966292 rs7547288 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop 950 chr1 47966317 47966318 rs11804846 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 950 chr1 47966859 47966860 rs17103342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4284.000000,724.000000, 0.855431,0.144569, maf-5-some-pop 950 chr1 47971645 47971646 rs4926559 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop,genotype-conflict 950 chr1 47972148 47972149 rs1572547 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop,maf-5-all-pops 951 chr1 47982641 47982642 rs1415540 0 - C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 951 chr1 47983282 47983283 rs560540 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1153.000000,3855.000000,3855.000000,1153.000000, 0.115116,0.384884,0.384884,0.115116, maf-5-some-pop 951 chr1 47988293 47988294 rs2457047 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_JCM,SC_SNP, 4 A,C,G,T, 4974.000000,34.000000,34.000000,4974.000000, 0.496605,0.003395,0.003395,0.496605, maf-5-some-pop 951 chr1 47989571 47989572 rs11808094 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop 951 chr1 47990748 47990749 rs1024108 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1079.000000,3929.000000,3929.000000,1079.000000, 0.107728,0.392272,0.392272,0.107728, maf-5-some-pop 951 chr1 47991950 47991951 rs478526 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1199.000000,3809.000000,3809.000000,1199.000000, 0.119708,0.380292,0.380292,0.119708, maf-5-some-pop 951 chr1 47992210 47992211 rs11211546 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop,maf-5-all-pops 951 chr1 47992259 47992260 rs2102437 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 605.000000,4403.000000,4403.000000,605.000000, 0.060403,0.439597,0.439597,0.060403, maf-5-some-pop,genotype-conflict 951 chr1 47995197 47995198 rs11211547 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,genotype-conflict 951 chr1 47996203 47996204 rs6688849 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop,genotype-conflict 951 chr1 47997657 47997658 rs512014 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 951 chr1 47997897 47997898 rs642750 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 191.000000,4817.000000,4817.000000,191.000000, 0.019069,0.480931,0.480931,0.019069, maf-5-some-pop 951 chr1 47998339 47998340 rs693036 0 - C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 951 chr1 48002254 48002255 rs2506984 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 164.000000,4844.000000,4844.000000,164.000000, 0.016374,0.483626,0.483626,0.016374, maf-5-some-pop 951 chr1 48004775 48004776 rs2485439 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 898.000000,4110.000000,4110.000000,898.000000, 0.089657,0.410343,0.410343,0.089657, maf-5-some-pop 951 chr1 48006352 48006353 rs2506982 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3660.000000,1348.000000,1348.000000,3660.000000, 0.365415,0.134585,0.134585,0.365415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48006499 48006500 rs12119350 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 4662.000000,346.000000, 0.930911,0.069090, maf-5-some-pop 951 chr1 48006897 48006898 rs10158159 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WUGSC_SSAHASNP, 2 A,G, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop,genotype-conflict 951 chr1 48009685 48009686 rs518057 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1966.000000,3042.000000,3042.000000,1966.000000, 0.196286,0.303714,0.303714,0.196286, maf-5-some-pop 951 chr1 48011532 48011533 rs10789511 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3414.000000,1594.000000, 0.681709,0.318291, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48015257 48015258 rs694308 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48015861 48015862 rs12124180 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1006.000000,4002.000000, 0.200879,0.799121, maf-5-some-pop 951 chr1 48016510 48016511 rs12743540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop 951 chr1 48018868 48018869 rs12029065 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop 951 chr1 48019221 48019222 rs17420782 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop,microattr-tpa,genotype-conflict 951 chr1 48019887 48019888 rs2485446 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3434.000000,1574.000000,1574.000000,3434.000000, 0.342851,0.157149,0.157149,0.342851, maf-5-some-pop,maf-5-all-pops 951 chr1 48020549 48020550 rs986874 0 + G G G/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2133.000000,2875.000000, 0.425919,0.574081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48021213 48021214 rs978248 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3446.000000,1562.000000, 0.688099,0.311901, maf-5-some-pop,maf-5-all-pops 951 chr1 48024772 48024773 rs2457070 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,genotype-conflict 951 chr1 48025823 48025824 rs4926901 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1704.000000,3304.000000, 0.340256,0.659744, maf-5-some-pop,maf-5-all-pops 951 chr1 48027066 48027067 rs623229 0 + G G A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 14 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 3 A,G,T, 674.000000,4328.000000,6.000000, 0.134585,0.864217,0.001198, maf-5-some-pop,genotype-conflict 951 chr1 48027478 48027479 rs2457071 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 275.000000,4733.000000, 0.054912,0.945088, maf-5-some-pop 951 chr1 48028704 48028705 rs1567310 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4295.000000,713.000000, 0.857628,0.142372, maf-5-some-pop 951 chr1 48028842 48028843 rs2174957 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop 951 chr1 48029038 48029039 rs11211555 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop 951 chr1 48029726 48029727 rs6656330 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 817.000000,4191.000000, 0.163139,0.836861, maf-5-some-pop,maf-5-all-pops 951 chr1 48033713 48033714 rs17455010 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3575.000000,1433.000000, 0.713858,0.286142, maf-5-some-pop 951 chr1 48033994 48033995 rs2457068 0 - C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 951 chr1 48034734 48034735 rs1876599 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3218.000000,1790.000000,1790.000000,3218.000000, 0.321286,0.178714,0.178714,0.321286, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48035812 48035813 rs10890490 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1061.000000,3947.000000, 0.211861,0.788139, maf-5-some-pop,maf-5-all-pops 951 chr1 48036323 48036324 rs949540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3573.000000,1435.000000, 0.713458,0.286542, maf-5-some-pop,genotype-conflict 951 chr1 48041605 48041606 rs2457050 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2131.000000,2877.000000,2877.000000,2131.000000, 0.212760,0.287240,0.287240,0.212760, maf-5-some-pop,maf-5-all-pops 951 chr1 48046928 48046929 rs1508604 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 562.000000,4446.000000,4446.000000,562.000000, 0.056110,0.443890,0.443890,0.056110, maf-5-some-pop 951 chr1 48048105 48048106 rs12565344 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3107.000000,1901.000000, 0.620407,0.379593, maf-5-some-pop,maf-5-all-pops 951 chr1 48048689 48048690 rs1355063 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4662.000000,346.000000,346.000000,4662.000000, 0.465455,0.034545,0.034545,0.465455, maf-5-some-pop 951 chr1 48049357 48049358 rs2507006 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1023.000000,3985.000000,3985.000000,1023.000000, 0.102137,0.397863,0.397863,0.102137, maf-5-some-pop 951 chr1 48056628 48056629 rs2507002 0 - C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 951 chr1 48060088 48060089 rs1108866 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1683.000000,3325.000000,3325.000000,1683.000000, 0.168031,0.331969,0.331969,0.168031, maf-5-some-pop,genotype-conflict 951 chr1 48060108 48060109 rs1108865 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1684.000000,3324.000000,3324.000000,1684.000000, 0.168131,0.331869,0.331869,0.168131, maf-5-some-pop 951 chr1 48061596 48061597 rs6673401 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3959.000000,1049.000000, 0.790535,0.209465, maf-5-some-pop 951 chr1 48062277 48062278 rs12402772 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2578.000000,2430.000000, 0.514776,0.485224, maf-5-some-pop,maf-5-all-pops 951 chr1 48063501 48063502 rs11211569 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 805.000000,4203.000000, 0.160743,0.839257, maf-5-some-pop 951 chr1 48065018 48065019 rs12742768 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,maf-5-all-pops,microattr-tpa 951 chr1 48065156 48065157 rs12760556 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 829.000000,4179.000000, 0.165535,0.834465, maf-5-some-pop,maf-5-all-pops 951 chr1 48071155 48071156 rs4554761 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1220.000000,3788.000000, 0.243610,0.756390, maf-5-some-pop,genotype-conflict 951 chr1 48071548 48071549 rs2457063 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3977.000000,1031.000000, 0.794129,0.205871, maf-5-some-pop 951 chr1 48071984 48071985 rs10493129 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 4 A,C,G,T, 117.000000,4891.000000,4891.000000,117.000000, 0.011681,0.488319,0.488319,0.011681, maf-5-some-pop 951 chr1 48082911 48082912 rs3004640 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 951 chr1 48083478 48083479 rs4926915 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2472.000000,2536.000000, 0.493610,0.506390, maf-5-some-pop,maf-5-all-pops 951 chr1 48084314 48084315 rs12563344 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,GMI,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 951 chr1 48085086 48085087 rs2506995 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 657.000000,4351.000000,4351.000000,657.000000, 0.065595,0.434405,0.434405,0.065595, maf-5-some-pop 951 chr1 48085267 48085268 rs4926916 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48090145 48090146 rs12403651 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1597.000000,3411.000000, 0.318890,0.681110, maf-5-some-pop,maf-5-all-pops 951 chr1 48090425 48090426 rs12734794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 951 chr1 48095099 48095100 rs11211579 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3313.000000,1695.000000, 0.661542,0.338458, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48097804 48097805 rs2506992 0 - C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 951 chr1 48100828 48100829 rs2506987 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2912.000000,2096.000000,2096.000000,2912.000000, 0.290735,0.209265,0.209265,0.290735, maf-5-some-pop,maf-5-all-pops 951 chr1 48102120 48102121 rs931937 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1664.000000,3344.000000,3344.000000,1664.000000, 0.166134,0.333866,0.333866,0.166134, maf-5-some-pop,maf-5-all-pops,genotype-conflict 951 chr1 48102144 48102145 rs1876598 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4007.000000,1001.000000,1001.000000,4007.000000, 0.400060,0.099940,0.099940,0.400060, maf-5-some-pop,genotype-conflict 951 chr1 48102983 48102984 rs2457057 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 4 A,C,G,T, 3010.000000,1998.000000,1998.000000,3010.000000, 0.300519,0.199481,0.199481,0.300519, maf-5-some-pop 952 chr1 48103593 48103594 rs2457053 0 - A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 952 chr1 48104176 48104177 rs17422073 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 952 chr1 48105227 48105228 rs12410488 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 952 chr1 48105615 48105616 rs12410529 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 952 chr1 48109224 48109225 rs4926923 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 720.000000,4288.000000, 0.143770,0.856230, maf-5-some-pop,maf-5-all-pops 952 chr1 48110750 48110751 rs10493128 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 199.000000,4809.000000,4809.000000,199.000000, 0.019868,0.480132,0.480132,0.019868, maf-5-some-pop,microattr-tpa 952 chr1 48113797 48113798 rs4926925 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop 952 chr1 48114416 48114417 rs10493127 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4488.000000,520.000000,520.000000,4488.000000, 0.448083,0.051917,0.051917,0.448083, maf-5-some-pop 952 chr1 48117692 48117693 rs11211585 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop,genotype-conflict 952 chr1 48118187 48118188 rs12407853 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 710.000000,4298.000000, 0.141773,0.858227, maf-5-some-pop,genotype-conflict 952 chr1 48123747 48123748 rs12144081 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 952 chr1 48125123 48125124 rs1249086 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM, 2 G,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,genotype-conflict 952 chr1 48133537 48133538 rs12402205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 952 chr1 48150452 48150453 rs12073935 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,C, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop 952 chr1 48155357 48155358 rs4926956 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4433.000000,575.000000, 0.885184,0.114816, maf-5-some-pop,maf-5-all-pops 952 chr1 48155983 48155984 rs4926588 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop 952 chr1 48164621 48164622 rs4926966 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop 952 chr1 48168374 48168375 rs11211590 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP, 2 A,G, 3693.000000,1315.000000, 0.737420,0.262580, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48169618 48169619 rs11803894 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop 952 chr1 48181285 48181286 rs893758 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2248.000000,2760.000000, 0.448882,0.551118, maf-5-some-pop,maf-5-all-pops 952 chr1 48183519 48183520 rs17103679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 952 chr1 48189252 48189253 rs7530242 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3346.000000,1662.000000, 0.668131,0.331869, maf-5-some-pop,maf-5-all-pops 952 chr1 48189630 48189631 rs7523973 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2235.000000,2773.000000, 0.446286,0.553714, maf-5-some-pop,maf-5-all-pops 952 chr1 48191604 48191605 rs1992299 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2277.000000,2731.000000, 0.454673,0.545327, maf-5-some-pop,maf-5-all-pops 952 chr1 48192753 48192754 rs1017475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1123.000000,3885.000000, 0.224241,0.775759, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48193204 48193205 rs4926601 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2747.000000,2261.000000, 0.548522,0.451478, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48196589 48196590 rs12022200 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1392.000000,3616.000000, 0.277955,0.722045, maf-5-some-pop 952 chr1 48197569 48197570 rs12567716 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop 952 chr1 48203989 48203990 rs7544082 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops 952 chr1 48212614 48212615 rs10789515 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3515.000000,1493.000000, 0.701877,0.298123, maf-5-some-pop 952 chr1 48213640 48213641 rs2165193 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48214206 48214207 rs4504937 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1462.000000,3546.000000, 0.291933,0.708067, maf-5-some-pop,genotype-conflict 952 chr1 48214622 48214623 rs17103715 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3334.000000,1674.000000, 0.665735,0.334265, maf-5-some-pop,maf-5-all-pops 952 chr1 48214881 48214882 rs6700815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48215063 48215064 rs6701002 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,genotype-conflict 952 chr1 48215336 48215337 rs12133618 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3704.000000,1304.000000, 0.739617,0.260383, maf-5-some-pop 952 chr1 48215378 48215379 rs11579242 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop,genotype-conflict 952 chr1 48215586 48215587 rs6665005 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,maf-5-all-pops 952 chr1 48215609 48215610 rs6672725 0 + T T A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 3 A,C,T, 325.000000,11.000000,4672.000000, 0.064896,0.002196,0.932907, maf-5-some-pop,maf-5-all-pops 952 chr1 48217968 48217969 rs17424028 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 952 chr1 48220218 48220219 rs748328 0 + C C C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 1718.000000,3290.000000, 0.343051,0.656949, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48220453 48220454 rs11584807 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4513.000000,495.000000, 0.901158,0.098842, maf-5-some-pop,genotype-conflict 952 chr1 48222049 48222050 rs10430126 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1032.000000,3976.000000, 0.206070,0.793930, maf-5-some-pop,genotype-conflict 952 chr1 48224581 48224582 rs1077842 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3727.000000,1281.000000,1281.000000,3727.000000, 0.372105,0.127895,0.127895,0.372105, maf-5-some-pop,genotype-conflict 952 chr1 48225295 48225296 rs6588491 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3703.000000,1305.000000, 0.739417,0.260583, maf-5-some-pop,maf-5-all-pops 952 chr1 48227942 48227943 rs1561573 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 18 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2770.000000,2238.000000, 0.553115,0.446885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 952 chr1 48229394 48229395 rs12085966 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4417.000000,591.000000, 0.881989,0.118011, maf-5-some-pop 952 chr1 48232130 48232131 rs3850879 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 952 chr1 48232178 48232179 rs4927044 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 854.000000,4154.000000, 0.170527,0.829473, maf-5-some-pop 952 chr1 48232502 48232503 rs3844086 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3455.000000,1553.000000, 0.689896,0.310104, maf-5-some-pop 952 chr1 48233731 48233732 rs12038078 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop 952 chr1 48233750 48233751 rs3850881 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2132.000000,2876.000000, 0.425719,0.574281, maf-5-some-pop 953 chr1 48235065 48235066 rs12037415 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2887.000000,2121.000000, 0.576478,0.423522, maf-5-some-pop,maf-5-all-pops 953 chr1 48236746 48236747 rs10890499 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1548.000000,3460.000000, 0.309105,0.690895, maf-5-some-pop 953 chr1 48240004 48240005 rs2282361 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2917.000000,2091.000000,2091.000000,2917.000000, 0.291234,0.208766,0.208766,0.291234, maf-5-some-pop,maf-5-all-pops 953 chr1 48240288 48240289 rs17458210 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop,genotype-conflict 953 chr1 48247076 48247077 rs3850885 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3031.000000,1977.000000, 0.605232,0.394768, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48248169 48248170 rs3850886 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2046.000000,2962.000000,2962.000000,2046.000000, 0.204273,0.295727,0.295727,0.204273, maf-5-some-pop,maf-5-all-pops 953 chr1 48251341 48251342 rs3862273 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3626.000000,1382.000000, 0.724042,0.275958, maf-5-some-pop,maf-5-all-pops 953 chr1 48254781 48254782 rs6588505 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3272.000000,1736.000000, 0.653355,0.346645, maf-5-some-pop,maf-5-all-pops,microattr-tpa 953 chr1 48255007 48255008 rs6588506 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48255410 48255411 rs4927058 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop 953 chr1 48258038 48258039 rs7516930 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1863.000000,3145.000000, 0.372005,0.627995, maf-5-some-pop,maf-5-all-pops 953 chr1 48258951 48258952 rs3850887 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3575.000000,1433.000000, 0.713858,0.286142, maf-5-some-pop 953 chr1 48261223 48261224 rs7554917 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1310.000000,3698.000000, 0.261581,0.738419, maf-5-some-pop,maf-5-all-pops 953 chr1 48261488 48261489 rs7528561 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop 953 chr1 48262618 48262619 rs4927069 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3316.000000,1692.000000, 0.662141,0.337859, maf-5-some-pop,maf-5-all-pops 953 chr1 48266639 48266640 rs2119102 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1414.000000,3594.000000, 0.282348,0.717652, maf-5-some-pop 953 chr1 48269324 48269325 rs11211606 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48275262 48275263 rs875398 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1347.000000,3661.000000, 0.268970,0.731030, maf-5-some-pop,maf-5-all-pops 953 chr1 48277764 48277765 rs6703502 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3663.000000,1345.000000, 0.731430,0.268570, maf-5-some-pop,maf-5-all-pops 953 chr1 48279622 48279623 rs17424871 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 953 chr1 48282287 48282288 rs12027251 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 506.000000,4502.000000, 0.101038,0.898962, maf-5-some-pop 953 chr1 48282375 48282376 rs12024706 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1099.000000,3909.000000, 0.219449,0.780551, maf-5-some-pop 953 chr1 48282519 48282520 rs3930825 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2808.000000,2200.000000, 0.560703,0.439297, maf-5-some-pop,maf-5-all-pops 953 chr1 48282583 48282584 rs12024792 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop 953 chr1 48282666 48282667 rs11211609 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 463.000000,4545.000000, 0.092452,0.907548, maf-5-some-pop 953 chr1 48283619 48283620 rs11211610 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 953 chr1 48284154 48284155 rs17458764 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 A,G, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 953 chr1 48284764 48284765 rs12036694 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3126.000000,1882.000000, 0.624201,0.375799, maf-5-some-pop,maf-5-all-pops 953 chr1 48285767 48285768 rs6671927 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1074.000000,3934.000000, 0.214457,0.785543, maf-5-some-pop,maf-5-all-pops 953 chr1 48286562 48286563 rs12134443 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,genotype-conflict 953 chr1 48288540 48288541 rs10789517 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 953 chr1 48289410 48289411 rs11211612 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop 953 chr1 48290859 48290860 rs11211613 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48293180 48293181 rs4511165 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1340.000000,3668.000000, 0.267572,0.732428, maf-5-some-pop,maf-5-all-pops 953 chr1 48294119 48294120 rs11581081 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop 953 chr1 48294919 48294920 rs12041283 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 953 chr1 48295032 48295033 rs10890506 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1433.000000,3575.000000, 0.286142,0.713858, maf-5-some-pop,maf-5-all-pops 953 chr1 48298373 48298374 rs1417140 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 953 chr1 48304260 48304261 rs1340216 0 + T T A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 953 chr1 48308456 48308457 rs12129836 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3896.000000,1112.000000, 0.777955,0.222045, maf-5-some-pop 953 chr1 48309586 48309587 rs10890507 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1615.000000,3393.000000, 0.322484,0.677516, maf-5-some-pop,maf-5-all-pops 953 chr1 48310334 48310335 rs6588525 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1219.000000,3789.000000, 0.243411,0.756589, maf-5-some-pop 953 chr1 48311618 48311619 rs11211616 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48320722 48320723 rs946834 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop 953 chr1 48323534 48323535 rs4926656 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1906.000000,3102.000000, 0.380591,0.619409, maf-5-some-pop,maf-5-all-pops 953 chr1 48323802 48323803 rs7518787 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3644.000000,1364.000000, 0.727636,0.272364, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48325929 48325930 rs1340209 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1573.000000,3435.000000, 0.314097,0.685903, maf-5-some-pop,maf-5-all-pops 953 chr1 48326286 48326287 rs1890859 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 953 chr1 48334489 48334490 rs10890510 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3645.000000,1363.000000, 0.727835,0.272165, maf-5-some-pop,maf-5-all-pops 953 chr1 48334988 48334989 rs12022868 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 953 chr1 48335404 48335405 rs884133 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3073.000000,1935.000000,1935.000000,3073.000000, 0.306809,0.193191,0.193191,0.306809, maf-5-some-pop,maf-5-all-pops 953 chr1 48335975 48335976 rs7556536 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3330.000000,1678.000000, 0.664936,0.335064, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48337060 48337061 rs1556979 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 C,T, 4690.000000,318.000000, 0.936502,0.063498, maf-5-some-pop,genotype-conflict 953 chr1 48337491 48337492 rs1556980 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1188.000000,3820.000000, 0.237220,0.762780, maf-5-some-pop 953 chr1 48338816 48338817 rs1417138 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,T, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop 953 chr1 48341004 48341005 rs10493130 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 948.000000,4060.000000,4060.000000,948.000000, 0.094649,0.405351,0.405351,0.094649, maf-5-some-pop,maf-5-all-pops,genotype-conflict 953 chr1 48341450 48341451 rs6657569 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop 953 chr1 48341892 48341893 rs17425308 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 40.000000,4968.000000, 0.007987,0.992013, maf-5-some-pop,genotype-conflict 953 chr1 48342622 48342623 rs10443227 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 4959.000000,49.000000, 0.990216,0.009784, 953 chr1 48342730 48342731 rs11576551 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 3377.000000,1631.000000, 0.674321,0.325679, maf-5-some-pop,maf-5-all-pops 953 chr1 48344389 48344390 rs10890511 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop,genotype-conflict 953 chr1 48348830 48348831 rs1340214 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 105.000000,4903.000000, 0.020966,0.979034, maf-5-some-pop 953 chr1 48349276 48349277 rs7531348 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop 953 chr1 48350798 48350799 rs9729312 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1187.000000,3821.000000, 0.237021,0.762979, maf-5-some-pop 953 chr1 48359094 48359095 rs7532660 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2577.000000,2431.000000, 0.514577,0.485423, maf-5-some-pop,maf-5-all-pops 953 chr1 48360524 48360525 rs11211625 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4185.000000,823.000000, 0.835663,0.164337, maf-5-some-pop 953 chr1 48362379 48362380 rs7527840 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 953 chr1 48363280 48363281 rs4927198 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2259.000000,2749.000000, 0.451078,0.548922, maf-5-some-pop,maf-5-all-pops 953 chr1 48364781 48364782 rs4926671 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 954 chr1 48367239 48367240 rs1538778 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 369.000000,4639.000000, 0.073682,0.926318, maf-5-some-pop 954 chr1 48367399 48367400 rs2201691 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 154.000000,4854.000000,4854.000000,154.000000, 0.015375,0.484625,0.484625,0.015375, maf-5-some-pop 954 chr1 48367438 48367439 rs1497096 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4638.000000,370.000000,370.000000,4638.000000, 0.463059,0.036941,0.036941,0.463059, maf-5-some-pop 954 chr1 48370524 48370525 rs1556981 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3541.000000,1467.000000, 0.707069,0.292931, maf-5-some-pop,maf-5-all-pops,genotype-conflict 954 chr1 48382593 48382594 rs6701116 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop 954 chr1 48383740 48383741 rs11211631 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2928.000000,2080.000000, 0.584665,0.415335, maf-5-some-pop,maf-5-all-pops 954 chr1 48383979 48383980 rs4927231 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop 954 chr1 48384795 48384796 rs4927234 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,genotype-conflict 954 chr1 48385997 48385998 rs12119021 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3421.000000,1587.000000, 0.683107,0.316893, maf-5-some-pop 954 chr1 48387426 48387427 rs10493131 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, maf-5-some-pop 954 chr1 48387587 48387588 rs6669798 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3837.000000,1171.000000, 0.766174,0.233826, maf-5-some-pop,maf-5-all-pops 954 chr1 48387919 48387920 rs6677970 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 954 chr1 48391667 48391668 rs1361443 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops 954 chr1 48393543 48393544 rs13374204 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 954 chr1 48396868 48396869 rs17459747 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 954 chr1 48397736 48397737 rs951879 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 154.000000,4854.000000,4854.000000,154.000000, 0.015375,0.484625,0.484625,0.015375, maf-5-some-pop 954 chr1 48403888 48403889 rs1845964 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop 954 chr1 48404309 48404310 rs954990 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1254.000000,3754.000000, 0.250399,0.749601, maf-5-some-pop,maf-5-all-pops 954 chr1 48404373 48404374 rs1390976 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 954 chr1 48406459 48406460 rs11211632 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2896.000000,2112.000000, 0.578275,0.421725, maf-5-some-pop 954 chr1 48407274 48407275 rs17426042 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop 954 chr1 48408923 48408924 rs12125780 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4098.000000,910.000000, 0.818291,0.181709, maf-5-some-pop,maf-5-all-pops 954 chr1 48409275 48409276 rs7522721 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 954 chr1 48411231 48411232 rs11578428 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2125.000000,2883.000000, 0.424321,0.575679, maf-5-some-pop,maf-5-all-pops,genotype-conflict 954 chr1 48411728 48411729 rs1603530 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop,maf-5-all-pops 954 chr1 48419645 48419646 rs931628 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 954 chr1 48421626 48421627 rs9660630 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3077.000000,1931.000000, 0.614417,0.385583, maf-5-some-pop 954 chr1 48421693 48421694 rs6673069 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop 954 chr1 48428942 48428943 rs12040390 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 5007.000000,1.000000, 0.999800,0.000200, 954 chr1 48434108 48434109 rs17103971 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop 954 chr1 48435141 48435142 rs17460291 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 954 chr1 48436147 48436148 rs12080929 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop,maf-5-all-pops 954 chr1 48436825 48436826 rs12407078 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1006.000000,4002.000000, 0.200879,0.799121, maf-5-some-pop,maf-5-all-pops 954 chr1 48439341 48439342 rs11581957 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 954 chr1 48444911 48444912 rs2065606 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 954 chr1 48445207 48445208 rs17103980 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop 954 chr1 48445490 48445491 rs17103991 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop 954 chr1 48447905 48447906 rs11205431 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3256.000000,1752.000000, 0.650160,0.349840, maf-5-some-pop,maf-5-all-pops 954 chr1 48451988 48451989 rs303912 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 954 chr1 48453226 48453227 rs6656936 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2953.000000,2055.000000, 0.589657,0.410343, maf-5-some-pop,maf-5-all-pops 954 chr1 48457542 48457543 rs6676465 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop,maf-5-all-pops 954 chr1 48467449 48467450 rs41394646 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,AFFY_GWHS,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1744.000000,3264.000000, 0.348243,0.651757, maf-5-some-pop,maf-5-all-pops 954 chr1 48469382 48469383 rs12405098 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 2997.000000,2011.000000, 0.598442,0.401558, maf-5-some-pop 954 chr1 48473191 48473192 rs12408925 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop 954 chr1 48473966 48473967 rs11586509 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 954 chr1 48477447 48477448 rs6700855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop 954 chr1 48479074 48479075 rs6695419 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop,genotype-conflict 954 chr1 48479524 48479525 rs303916 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 A,T, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,genotype-conflict 954 chr1 48484050 48484051 rs12403496 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop 954 chr1 48484104 48484105 rs2492792 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 68.000000,4940.000000,4940.000000,68.000000, 0.006789,0.493211,0.493211,0.006789, maf-5-some-pop 954 chr1 48484147 48484148 rs2483647 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop 954 chr1 48484326 48484327 rs2492791 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4240.000000,768.000000,768.000000,4240.000000, 0.423323,0.076677,0.076677,0.423323, maf-5-some-pop 954 chr1 48485046 48485047 rs1413330 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 954 chr1 48485683 48485684 rs1760424 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 954 chr1 48486171 48486172 rs1693246 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 954 chr1 48487136 48487137 rs1693251 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1053.000000,3955.000000,3955.000000,1053.000000, 0.105132,0.394868,0.394868,0.105132, maf-5-some-pop 954 chr1 48495635 48495636 rs215863 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1575.000000,3433.000000,3433.000000,1575.000000, 0.157248,0.342752,0.342752,0.157248, maf-5-some-pop,maf-5-all-pops,genotype-conflict 954 chr1 48496013 48496014 rs6683262 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 955 chr1 48503279 48503280 rs303925 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48505363 48505364 rs1409168 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4212.000000,796.000000,796.000000,4212.000000, 0.420527,0.079473,0.079473,0.420527, maf-5-some-pop 955 chr1 48507036 48507037 rs6588642 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48507984 48507985 rs1325964 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 147.000000,4861.000000,4861.000000,147.000000, 0.014677,0.485323,0.485323,0.014677, maf-5-some-pop 955 chr1 48509018 48509019 rs748143 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1882.000000,3126.000000,3126.000000,1882.000000, 0.187899,0.312101,0.312101,0.187899, maf-5-some-pop,maf-5-all-pops 955 chr1 48509052 48509053 rs748142 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1730.000000,3278.000000,3278.000000,1730.000000, 0.172724,0.327276,0.327276,0.172724, maf-5-some-pop,maf-5-all-pops 955 chr1 48509158 48509159 rs748141 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 298.000000,4710.000000,4710.000000,298.000000, 0.029752,0.470248,0.470248,0.029752, maf-5-some-pop 955 chr1 48509938 48509939 rs6664402 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1887.000000,3121.000000, 0.376797,0.623203, maf-5-some-pop,maf-5-all-pops 955 chr1 48511850 48511851 rs823391 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TSC-CSHL, 4 A,C,G,T, 4891.000000,117.000000,117.000000,4891.000000, 0.488319,0.011681,0.011681,0.488319, maf-5-some-pop 955 chr1 48512118 48512119 rs7549671 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3357.000000,1651.000000, 0.670327,0.329673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48512368 48512369 rs6690144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 685.000000,4323.000000, 0.136781,0.863219, maf-5-some-pop,maf-5-all-pops 955 chr1 48512649 48512650 rs6690390 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 774.000000,4234.000000, 0.154553,0.845447, maf-5-some-pop,maf-5-all-pops 955 chr1 48512744 48512745 rs823390 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1612.000000,3396.000000,3396.000000,1612.000000, 0.160942,0.339058,0.339058,0.160942, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48514364 48514365 rs17104081 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 955 chr1 48515376 48515377 rs17104087 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48516400 48516401 rs513108 0 + G G G/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 1819.000000,3189.000000, 0.363219,0.636781, maf-5-some-pop,maf-5-all-pops 955 chr1 48517017 48517018 rs4927321 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3397.000000,1611.000000, 0.678315,0.321685, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48517181 48517182 rs302694 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1814.000000,3194.000000,3194.000000,1814.000000, 0.181110,0.318890,0.318890,0.181110, maf-5-some-pop,maf-5-all-pops 955 chr1 48518812 48518813 rs302693 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP, 4 A,C,G,T, 117.000000,4891.000000,4891.000000,117.000000, 0.011681,0.488319,0.488319,0.011681, maf-5-some-pop 955 chr1 48519514 48519515 rs2270975 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48519911 48519912 rs302691 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1949.000000,3059.000000,3059.000000,1949.000000, 0.194589,0.305411,0.305411,0.194589, maf-5-some-pop,maf-5-all-pops 955 chr1 48520315 48520316 rs6665184 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop 955 chr1 48520616 48520617 rs6699629 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 974.000000,4034.000000, 0.194489,0.805511, maf-5-some-pop,maf-5-all-pops 955 chr1 48520776 48520777 rs2270973 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4025.000000,983.000000,983.000000,4025.000000, 0.401857,0.098143,0.098143,0.401857, maf-5-some-pop,maf-5-all-pops 955 chr1 48520810 48520811 rs302690 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 125.000000,4883.000000,4883.000000,125.000000, 0.012480,0.487520,0.487520,0.012480, maf-5-some-pop 955 chr1 48522196 48522197 rs302685 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3386.000000,1622.000000,1622.000000,3386.000000, 0.338059,0.161941,0.161941,0.338059, maf-5-some-pop,maf-5-all-pops 955 chr1 48524179 48524180 rs6679531 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1478.000000,3530.000000, 0.295128,0.704872, maf-5-some-pop 955 chr1 48527533 48527534 rs7542715 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3822.000000,1186.000000, 0.763179,0.236821, maf-5-some-pop,maf-5-all-pops 955 chr1 48530257 48530258 rs728864 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 955 chr1 48536670 48536671 rs584921 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1331.000000,3677.000000, 0.265775,0.734225, maf-5-some-pop,maf-5-all-pops 955 chr1 48536797 48536798 rs584425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1863.000000,3145.000000, 0.372005,0.627995, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48543157 48543158 rs592072 0 + C C C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop 955 chr1 48545241 48545242 rs12081187 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,JMKIDD_LAB,SC_SNP, 2 A,G, 45.000000,4963.000000, 0.008986,0.991014, maf-5-some-pop 955 chr1 48545336 48545337 rs653364 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1991.000000,3017.000000, 0.397564,0.602436, maf-5-some-pop,maf-5-all-pops 955 chr1 48549312 48549313 rs12036718 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 955 chr1 48549672 48549673 rs560004 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2981.000000,2027.000000,2027.000000,2981.000000, 0.297624,0.202376,0.202376,0.297624, maf-5-some-pop,maf-5-all-pops 955 chr1 48552260 48552261 rs658060 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3096.000000,1912.000000, 0.618211,0.381789, maf-5-some-pop,maf-5-all-pops 955 chr1 48556329 48556330 rs4466696 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1455.000000,3553.000000, 0.290535,0.709465, maf-5-some-pop,maf-5-all-pops 955 chr1 48556820 48556821 rs472771 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2236.000000,2772.000000, 0.446486,0.553514, maf-5-some-pop,maf-5-all-pops 955 chr1 48557528 48557529 rs17104146 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 955 chr1 48564266 48564267 rs17468833 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3065.000000,1943.000000, 0.612021,0.387979, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48567116 48567117 rs17428691 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop,genotype-conflict 955 chr1 48568399 48568400 rs17468972 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 881.000000,4127.000000, 0.175919,0.824081, maf-5-some-pop,genotype-conflict 955 chr1 48568671 48568672 rs10888596 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2070.000000,2938.000000, 0.413339,0.586661, maf-5-some-pop,maf-5-all-pops 955 chr1 48570132 48570133 rs2073293 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1040.000000,3968.000000,3968.000000,1040.000000, 0.103834,0.396166,0.396166,0.103834, maf-5-some-pop,maf-5-all-pops 955 chr1 48570465 48570466 rs12047002 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3727.000000,1281.000000, 0.744209,0.255791, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48575109 48575110 rs17299092 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,genotype-conflict 955 chr1 48581509 48581510 rs12127052 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3653.000000,1355.000000, 0.729433,0.270567, maf-5-some-pop,maf-5-all-pops,genotype-conflict 955 chr1 48581839 48581840 rs17104167 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,genotype-conflict 955 chr1 48587391 48587392 rs7537289 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,genotype-conflict 955 chr1 48590385 48590386 rs214200 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2719.000000,2289.000000,2289.000000,2719.000000, 0.271466,0.228534,0.228534,0.271466, maf-5-some-pop,maf-5-all-pops 955 chr1 48592988 48592989 rs11583308 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 2302.000000,2706.000000, 0.459665,0.540335, maf-5-some-pop,maf-5-all-pops 955 chr1 48594188 48594189 rs17104181 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,TISHKOFF, 2 A,G, 4741.000000,267.000000, 0.946685,0.053315, maf-5-some-pop 955 chr1 48594281 48594282 rs11205442 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 989.000000,4019.000000, 0.197484,0.802516, maf-5-some-pop 955 chr1 48596088 48596089 rs12034140 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop 955 chr1 48604696 48604697 rs11205444 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,genotype-conflict 955 chr1 48606877 48606878 rs12741362 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 955 chr1 48607656 48607657 rs214234 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4917.000000,91.000000,91.000000,4917.000000, 0.490915,0.009085,0.009085,0.490915, maf-5-some-pop 955 chr1 48609037 48609038 rs2134477 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 2972.000000,2036.000000,2036.000000,2972.000000, 0.296725,0.203275,0.203275,0.296725, maf-5-some-pop,maf-5-all-pops 955 chr1 48622768 48622769 rs11590352 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 940.000000,4068.000000, 0.187700,0.812300, maf-5-some-pop 955 chr1 48626280 48626281 rs17104206 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4974.000000,34.000000, 0.993211,0.006789, maf-5-some-pop 956 chr1 48628135 48628136 rs214215 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 90.000000,4918.000000,4918.000000,90.000000, 0.008986,0.491014,0.491014,0.008986, maf-5-some-pop 956 chr1 48628866 48628867 rs214214 0 - T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 956 chr1 48629395 48629396 rs12072449 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop 956 chr1 48630437 48630438 rs10788882 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3196.000000,1812.000000, 0.638179,0.361821, maf-5-some-pop,maf-5-all-pops 956 chr1 48630939 48630940 rs17104225 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 956 chr1 48643787 48643788 rs214197 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4928.000000,80.000000,80.000000,4928.000000, 0.492013,0.007987,0.007987,0.492013, maf-5-some-pop 956 chr1 48647106 48647107 rs10888598 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3067.000000,1941.000000, 0.612420,0.387580, maf-5-some-pop,maf-5-all-pops 956 chr1 48647123 48647124 rs11205449 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1257.000000,3751.000000, 0.250998,0.749002, maf-5-some-pop,genotype-conflict 956 chr1 48648066 48648067 rs1361006 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,C, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop 956 chr1 48648242 48648243 rs1361007 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 2 C,T, 4980.000000,28.000000, 0.994409,0.005591, 956 chr1 48649489 48649490 rs10888599 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3186.000000,1822.000000, 0.636182,0.363818, maf-5-some-pop,maf-5-all-pops,genotype-conflict 956 chr1 48651520 48651521 rs214187 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4919.000000,89.000000,89.000000,4919.000000, 0.491114,0.008886,0.008886,0.491114, 956 chr1 48651708 48651709 rs12123285 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1312.000000,3696.000000, 0.261981,0.738019, maf-5-some-pop 956 chr1 48652175 48652176 rs630222 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1395.000000,3613.000000, 0.278554,0.721446, maf-5-some-pop 956 chr1 48652881 48652882 rs643510 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4912.000000,96.000000,96.000000,4912.000000, 0.490415,0.009585,0.009585,0.490415, maf-5-some-pop,genotype-conflict 956 chr1 48655213 48655214 rs7541597 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1307.000000,3701.000000, 0.260982,0.739018, maf-5-some-pop,genotype-conflict 956 chr1 48666028 48666029 rs12144184 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 10 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 3 C,G,T, 4797.000000,4.000000,207.000000, 0.957867,0.000799,0.041334, maf-5-some-pop 956 chr1 48666523 48666524 rs519720 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3404.000000,1604.000000,1604.000000,3404.000000, 0.339856,0.160144,0.160144,0.339856, maf-5-some-pop,maf-5-all-pops 956 chr1 48668296 48668297 rs558615 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3402.000000,1606.000000,1606.000000,3402.000000, 0.339657,0.160343,0.160343,0.339657, maf-5-some-pop,maf-5-all-pops 956 chr1 48668615 48668616 rs555238 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1604.000000,3404.000000,3404.000000,1604.000000, 0.160144,0.339856,0.339856,0.160144, maf-5-some-pop,maf-5-all-pops 956 chr1 48670414 48670415 rs12128169 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1314.000000,3694.000000, 0.262380,0.737620, maf-5-some-pop 956 chr1 48670483 48670484 rs17104273 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4418.000000,590.000000, 0.882188,0.117812, maf-5-some-pop 956 chr1 48672400 48672401 rs1722710 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 2598.000000,2410.000000,2410.000000,2598.000000, 0.259385,0.240615,0.240615,0.259385, maf-5-some-pop 956 chr1 48673690 48673691 rs535295 0 - A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4166.000000,842.000000,842.000000,4166.000000, 0.415935,0.084065,0.084065,0.415935, maf-5-some-pop 956 chr1 48673744 48673745 rs492379 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 956 chr1 48673935 48673936 rs537303 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop,genotype-conflict 956 chr1 48679888 48679889 rs12132243 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop 956 chr1 48681692 48681693 rs12081912 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop,genotype-conflict 956 chr1 48681885 48681886 rs11205457 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop 956 chr1 48682033 48682034 rs10788883 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops,genotype-conflict 956 chr1 48685434 48685435 rs926979 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2211.000000,2797.000000,2797.000000,2211.000000, 0.220747,0.279253,0.279253,0.220747, maf-5-some-pop,maf-5-all-pops,genotype-conflict 956 chr1 48686095 48686096 rs1524732 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop,maf-5-all-pops,genotype-conflict 956 chr1 48686991 48686992 rs212986 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop 956 chr1 48690228 48690229 rs10788884 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3162.000000,1846.000000, 0.631390,0.368610, maf-5-some-pop 956 chr1 48702447 48702448 rs2137831 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1248.000000,3760.000000,3760.000000,1248.000000, 0.124601,0.375399,0.375399,0.124601, maf-5-some-pop,genotype-conflict 956 chr1 48704436 48704437 rs1005538 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 956 chr1 48708227 48708228 rs850763 0 - G G A/C genomic single unknown 0 0 nonsense exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 4 A,C,G,T, 570.000000,4438.000000,4438.000000,570.000000, 0.056909,0.443091,0.443091,0.056909, maf-5-some-pop 956 chr1 48709018 48709019 rs6670286 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3675.000000,1333.000000, 0.733826,0.266174, maf-5-some-pop,maf-5-all-pops,genotype-conflict 956 chr1 48711814 48711815 rs41341650 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 956 chr1 48719233 48719234 rs169880 0 - G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 956 chr1 48719324 48719325 rs212966 0 - A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 956 chr1 48725095 48725096 rs498502 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops 956 chr1 48725295 48725296 rs520189 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3035.000000,1973.000000, 0.606030,0.393970, maf-5-some-pop,maf-5-all-pops 956 chr1 48725430 48725431 rs6704171 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4009.000000,999.000000, 0.800519,0.199481, maf-5-some-pop,genotype-conflict 956 chr1 48732779 48732780 rs926978 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4362.000000,646.000000,646.000000,4362.000000, 0.435503,0.064497,0.064497,0.435503, maf-5-some-pop 956 chr1 48733261 48733262 rs212956 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,G, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop,maf-5-all-pops 956 chr1 48734365 48734366 rs743065 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 758.000000,4250.000000,4250.000000,758.000000, 0.075679,0.424321,0.424321,0.075679, maf-5-some-pop 956 chr1 48734665 48734666 rs212968 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2843.000000,2165.000000,2165.000000,2843.000000, 0.283846,0.216154,0.216154,0.283846, maf-5-some-pop,maf-5-all-pops,genotype-conflict 957 chr1 48759273 48759274 rs4433447 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3057.000000,1951.000000, 0.610423,0.389577, maf-5-some-pop,genotype-conflict 957 chr1 48762660 48762661 rs17104339 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 957 chr1 48764667 48764668 rs17104343 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 A,C, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop 957 chr1 48775942 48775943 rs7536253 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 957 chr1 48797331 48797332 rs1114192 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop 957 chr1 48809179 48809180 rs12078285 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 957 chr1 48810111 48810112 rs1120985 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1394.000000,3614.000000, 0.278355,0.721645, maf-5-some-pop 957 chr1 48812952 48812953 rs12135744 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3615.000000,1393.000000, 0.721845,0.278155, maf-5-some-pop 957 chr1 48820293 48820294 rs11205476 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2840.000000,2168.000000, 0.567093,0.432907, maf-5-some-pop,maf-5-all-pops 957 chr1 48820385 48820386 rs2175864 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3788.000000,1220.000000,1220.000000,3788.000000, 0.378195,0.121805,0.121805,0.378195, maf-5-some-pop,maf-5-all-pops 957 chr1 48824155 48824156 rs932087 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop 957 chr1 48824406 48824407 rs1877720 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 4533.000000,475.000000, 0.905152,0.094848, maf-5-some-pop 957 chr1 48826008 48826009 rs7513258 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 853.000000,4155.000000, 0.170327,0.829673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 957 chr1 48828014 48828015 rs1877719 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1147.000000,3861.000000, 0.229034,0.770966, maf-5-some-pop,maf-5-all-pops 957 chr1 48841814 48841815 rs2153017 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 541.000000,4467.000000,4467.000000,541.000000, 0.054014,0.445986,0.445986,0.054014, maf-5-some-pop 957 chr1 48857312 48857313 rs3767616 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop,maf-5-all-pops,genotype-conflict 957 chr1 48863364 48863365 rs1416043 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 329.000000,4679.000000,4679.000000,329.000000, 0.032847,0.467153,0.467153,0.032847, maf-5-some-pop,genotype-conflict 957 chr1 48885194 48885195 rs12065998 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,C, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 957 chr1 48889598 48889599 rs2490537 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop 958 chr1 48910975 48910976 rs2485911 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1948.000000,3060.000000, 0.388978,0.611022, maf-5-some-pop,maf-5-all-pops 958 chr1 48911429 48911430 rs2255264 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4338.000000,670.000000, 0.866214,0.133786, maf-5-some-pop,genotype-conflict 958 chr1 48911792 48911793 rs2803251 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 175.000000,4833.000000,4833.000000,175.000000, 0.017472,0.482528,0.482528,0.017472, maf-5-some-pop 958 chr1 48932487 48932488 rs2787873 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 958 chr1 48932771 48932772 rs2803282 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4349.000000,659.000000, 0.868411,0.131589, maf-5-some-pop,genotype-conflict 958 chr1 48935278 48935279 rs12139933 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop 958 chr1 48939677 48939678 rs2245912 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 958 chr1 48959576 48959577 rs17470284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop 958 chr1 48963397 48963398 rs2798104 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 560.000000,4448.000000,4448.000000,560.000000, 0.055911,0.444089,0.444089,0.055911, maf-5-some-pop 958 chr1 48965420 48965421 rs12021554 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops 958 chr1 48965483 48965484 rs12021583 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2870.000000,2138.000000, 0.573083,0.426917, maf-5-some-pop,maf-5-all-pops 958 chr1 48974868 48974869 rs2256030 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1457.000000,3551.000000, 0.290935,0.709065, maf-5-some-pop 958 chr1 48974932 48974933 rs1539530 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2343.000000,2665.000000, 0.467851,0.532149, maf-5-some-pop,maf-5-all-pops 958 chr1 48975445 48975446 rs2354462 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1406.000000,3602.000000, 0.280751,0.719249, clinically-assoc,maf-5-some-pop,has-omim-omia,genotype-conflict 958 chr1 48976855 48976856 rs7527001 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop 958 chr1 48987510 48987511 rs7555069 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2772.000000,2236.000000, 0.553514,0.446486, maf-5-some-pop,maf-5-all-pops,genotype-conflict 958 chr1 48995450 48995451 rs12566454 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop 958 chr1 48998246 48998247 rs2798112 0 - C C A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1590.000000,3418.000000,3418.000000,1590.000000, 0.158746,0.341254,0.341254,0.158746, maf-5-some-pop,maf-5-all-pops 958 chr1 48998268 48998269 rs12128908 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop,genotype-conflict 958 chr1 48998360 48998361 rs2246105 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop,maf-5-all-pops 958 chr1 48998441 48998442 rs11588081 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 940.000000,4068.000000, 0.187700,0.812300, maf-5-some-pop,maf-5-all-pops,genotype-conflict 958 chr1 48998747 48998748 rs2803261 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSAHASNP,TISHKOFF, 2 G,T, 2260.000000,2748.000000, 0.451278,0.548722, maf-5-some-pop,maf-5-all-pops 958 chr1 49001368 49001369 rs1539525 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2497.000000,2511.000000, 0.498602,0.501398, maf-5-some-pop,genotype-conflict 958 chr1 49001779 49001780 rs2246557 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2992.000000,2016.000000, 0.597444,0.402556, maf-5-some-pop 958 chr1 49002873 49002874 rs2246670 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2038.000000,2970.000000, 0.406949,0.593051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 958 chr1 49003130 49003131 rs4926743 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop 958 chr1 49003255 49003256 rs1113487 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop,genotype-conflict 958 chr1 49006489 49006490 rs12060146 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop,genotype-conflict 958 chr1 49006655 49006656 rs12090956 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop 958 chr1 49006785 49006786 rs7515225 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3815.000000,1193.000000, 0.761781,0.238219, maf-5-some-pop,maf-5-all-pops 958 chr1 49017434 49017435 rs11205505 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop 958 chr1 49019792 49019793 rs2803267 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1903.000000,3105.000000, 0.379992,0.620008, maf-5-some-pop,genotype-conflict 959 chr1 49021079 49021080 rs1418953 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2646.000000,2362.000000,2362.000000,2646.000000, 0.264177,0.235823,0.235823,0.264177, maf-5-some-pop,maf-5-all-pops 959 chr1 49021518 49021519 rs12066734 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4319.000000,689.000000, 0.862420,0.137580, maf-5-some-pop,genotype-conflict 959 chr1 49025932 49025933 rs10888606 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop,maf-5-all-pops 959 chr1 49031237 49031238 rs2803270 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2206.000000,2802.000000, 0.440495,0.559505, maf-5-some-pop,maf-5-all-pops 959 chr1 49033295 49033296 rs17104515 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,genotype-conflict 959 chr1 49033733 49033734 rs11802042 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 4467.000000,541.000000, 0.891973,0.108027, maf-5-some-pop 959 chr1 49034263 49034264 rs12146114 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop 959 chr1 49035782 49035783 rs2798098 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1287.000000,3721.000000,3721.000000,1287.000000, 0.128494,0.371506,0.371506,0.128494, maf-5-some-pop 959 chr1 49036102 49036103 rs17364614 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop 959 chr1 49036511 49036512 rs2798095 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2382.000000,2626.000000,2626.000000,2382.000000, 0.237819,0.262181,0.262181,0.237819, maf-5-some-pop,maf-5-all-pops 959 chr1 49037052 49037053 rs1539529 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4149.000000,859.000000,859.000000,4149.000000, 0.414237,0.085763,0.085763,0.414237, maf-5-some-pop 959 chr1 49037216 49037217 rs17373183 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop,genotype-conflict 959 chr1 49041093 49041094 rs10493133 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop 959 chr1 49042348 49042349 rs2803273 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 961.000000,4047.000000, 0.191893,0.808107, maf-5-some-pop 959 chr1 49042951 49042952 rs10493134 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop 959 chr1 49043428 49043429 rs2803274 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1949.000000,3059.000000, 0.389177,0.610823, maf-5-some-pop 959 chr1 49043876 49043877 rs6665839 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3733.000000,1275.000000, 0.745407,0.254593, maf-5-some-pop,genotype-conflict 959 chr1 49043897 49043898 rs2798123 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1970.000000,3038.000000,3038.000000,1970.000000, 0.196685,0.303315,0.303315,0.196685, maf-5-some-pop,maf-5-all-pops 959 chr1 49044128 49044129 rs2798122 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4049.000000,959.000000,959.000000,4049.000000, 0.404253,0.095747,0.095747,0.404253, maf-5-some-pop,genotype-conflict 959 chr1 49046896 49046897 rs2798121 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 959 chr1 49047145 49047146 rs17104533 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1063.000000,3945.000000, 0.212260,0.787740, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49047167 49047168 rs17104537 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3945.000000,1063.000000, 0.787740,0.212260, maf-5-some-pop,maf-5-all-pops 959 chr1 49049757 49049758 rs11205510 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP, 2 A,G, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop 959 chr1 49050924 49050925 rs3814007 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop 959 chr1 49051747 49051748 rs11205512 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop 959 chr1 49052422 49052423 rs11579440 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop,genotype-conflict 959 chr1 49052932 49052933 rs2803277 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1721.000000,3287.000000, 0.343650,0.656350, maf-5-some-pop 959 chr1 49054879 49054880 rs923028 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1699.000000,3309.000000,3309.000000,1699.000000, 0.169629,0.330371,0.330371,0.169629, maf-5-some-pop,genotype-conflict 959 chr1 49061157 49061158 rs12066237 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop 959 chr1 49066643 49066644 rs319980 0 - G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49067378 49067379 rs319978 0 - C C A/G genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 840.000000,4168.000000,4168.000000,840.000000, 0.083866,0.416134,0.416134,0.083866, maf-5-some-pop 959 chr1 49068079 49068080 rs319977 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 959 chr1 49069903 49069904 rs319976 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3821.000000,1187.000000,1187.000000,3821.000000, 0.381490,0.118510,0.118510,0.381490, maf-5-some-pop,maf-5-all-pops 959 chr1 49072634 49072635 rs191189 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1020.000000,3988.000000,3988.000000,1020.000000, 0.101837,0.398163,0.398163,0.101837, maf-5-some-pop,maf-5-all-pops 959 chr1 49074467 49074468 rs11811953 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop 959 chr1 49074644 49074645 rs191190 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2596.000000,2412.000000, 0.518371,0.481629, maf-5-some-pop,maf-5-all-pops 959 chr1 49074994 49074995 rs320017 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3795.000000,1213.000000, 0.757788,0.242212, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49082022 49082023 rs320027 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4110.000000,898.000000, 0.820687,0.179313, maf-5-some-pop,genotype-conflict 959 chr1 49085702 49085703 rs320029 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2907.000000,2101.000000, 0.580471,0.419529, maf-5-some-pop,maf-5-all-pops 959 chr1 49087601 49087602 rs320033 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2989.000000,2019.000000, 0.596845,0.403155, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49089446 49089447 rs11807595 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 959 chr1 49092038 49092039 rs11205517 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop,genotype-conflict 959 chr1 49092206 49092207 rs319949 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2063.000000,2945.000000,2945.000000,2063.000000, 0.205970,0.294030,0.294030,0.205970, maf-5-some-pop 959 chr1 49098325 49098326 rs7516699 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop 959 chr1 49100170 49100171 rs12091951 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop 959 chr1 49100578 49100579 rs319984 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 959 chr1 49101448 49101449 rs319985 0 + T T A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,T, 2606.000000,2402.000000, 0.520367,0.479633, maf-5-some-pop,maf-5-all-pops 959 chr1 49106289 49106290 rs7535727 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 959 chr1 49106415 49106416 rs1999709 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1813.000000,3195.000000, 0.362021,0.637979, maf-5-some-pop,maf-5-all-pops 959 chr1 49107978 49107979 rs7517510 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop,genotype-conflict 959 chr1 49112892 49112893 rs319954 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2036.000000,2972.000000,2972.000000,2036.000000, 0.203275,0.296725,0.296725,0.203275, maf-5-some-pop,maf-5-all-pops 959 chr1 49113246 49113247 rs17373849 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop,genotype-conflict 959 chr1 49113318 49113319 rs319953 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1723.000000,3285.000000,3285.000000,1723.000000, 0.172025,0.327975,0.327975,0.172025, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49113621 49113622 rs319952 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2849.000000,2159.000000,2159.000000,2849.000000, 0.284445,0.215555,0.215555,0.284445, maf-5-some-pop,maf-5-all-pops 959 chr1 49115889 49115890 rs11586678 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4617.000000,391.000000, 0.921925,0.078075, maf-5-some-pop 959 chr1 49116364 49116365 rs7550588 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 959 chr1 49116413 49116414 rs319990 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2550.000000,2458.000000, 0.509185,0.490815, maf-5-some-pop,maf-5-all-pops 959 chr1 49117241 49117242 rs11205519 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1939.000000,3069.000000, 0.387181,0.612819, maf-5-some-pop,maf-5-all-pops 959 chr1 49123431 49123432 rs319998 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2887.000000,2121.000000, 0.576478,0.423522, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49123566 49123567 rs7556311 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop 959 chr1 49123706 49123707 rs319999 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2075.000000,2933.000000, 0.414337,0.585663, maf-5-some-pop,maf-5-all-pops 959 chr1 49126252 49126253 rs320000 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2283.000000,2725.000000, 0.455871,0.544129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49129203 49129204 rs320009 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2726.000000,2282.000000, 0.544329,0.455671, maf-5-some-pop,maf-5-all-pops 959 chr1 49129845 49129846 rs320011 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SHGC/AFFYMETRIX,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2897.000000,2111.000000, 0.578474,0.421526, maf-5-some-pop,maf-5-all-pops 959 chr1 49130137 49130138 rs320012 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 959 chr1 49130497 49130498 rs10158785 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop 959 chr1 49130537 49130538 rs320013 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2110.000000,2898.000000, 0.421326,0.578674, maf-5-some-pop,maf-5-all-pops 959 chr1 49130682 49130683 rs320014 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 959 chr1 49131717 49131718 rs7520011 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop 959 chr1 49133660 49133661 rs6663376 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2300.000000,2708.000000, 0.459265,0.540735, maf-5-some-pop,maf-5-all-pops 959 chr1 49133885 49133886 rs397260 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2572.000000,2436.000000,2436.000000,2572.000000, 0.256789,0.243211,0.243211,0.256789, maf-5-some-pop,maf-5-all-pops 959 chr1 49134589 49134590 rs379757 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2339.000000,2669.000000,2669.000000,2339.000000, 0.233526,0.266474,0.266474,0.233526, maf-5-some-pop,maf-5-all-pops 959 chr1 49135261 49135262 rs365925 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2588.000000,2420.000000,2420.000000,2588.000000, 0.258387,0.241613,0.241613,0.258387, maf-5-some-pop,maf-5-all-pops 959 chr1 49136633 49136634 rs6658427 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 959 chr1 49136873 49136874 rs4447026 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,G, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop 959 chr1 49137533 49137534 rs10888611 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2526.000000,2482.000000, 0.504393,0.495607, maf-5-some-pop,maf-5-all-pops 959 chr1 49139489 49139490 rs17104636 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop 959 chr1 49139530 49139531 rs387244 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1724.000000,3284.000000, 0.344249,0.655751, maf-5-some-pop,maf-5-all-pops 959 chr1 49140974 49140975 rs11205520 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 959 chr1 49141250 49141251 rs7532350 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop 959 chr1 49145513 49145514 rs319959 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1939.000000,3069.000000, 0.387181,0.612819, maf-5-some-pop,maf-5-all-pops,genotype-conflict 959 chr1 49148579 49148580 rs6694041 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop,genotype-conflict 959 chr1 49148643 49148644 rs6694056 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 4190.000000,818.000000, 0.836661,0.163339, maf-5-some-pop 959 chr1 49148941 49148942 rs11205521 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 4327.000000,681.000000, 0.864018,0.135982, maf-5-some-pop 959 chr1 49149494 49149495 rs17104657 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 959 chr1 49151885 49151886 rs319981 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2285.000000,2723.000000, 0.456270,0.543730, maf-5-some-pop,maf-5-all-pops 960 chr1 49154949 49154950 rs17104662 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop 960 chr1 49156376 49156377 rs17104664 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4573.000000,435.000000, 0.913139,0.086861, maf-5-some-pop,genotype-conflict 960 chr1 49157927 49157928 rs17104667 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop 960 chr1 49158534 49158535 rs12239092 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 960 chr1 49162229 49162230 rs7541976 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 198.000000,4810.000000, 0.039537,0.960463, maf-5-some-pop 960 chr1 49162395 49162396 rs7530339 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop 960 chr1 49164687 49164688 rs6695778 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop,genotype-conflict 960 chr1 49164734 49164735 rs12096159 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop 960 chr1 49165306 49165307 rs12071598 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 960 chr1 49166723 49166724 rs320037 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop 960 chr1 49169262 49169263 rs320040 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop 960 chr1 49170355 49170356 rs320046 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,genotype-conflict 960 chr1 49171140 49171141 rs320047 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop,genotype-conflict 960 chr1 49172140 49172141 rs17104687 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 960 chr1 49174058 49174059 rs320049 0 + T T A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4136.000000,872.000000, 0.825879,0.174121, maf-5-some-pop 960 chr1 49174404 49174405 rs320050 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 960 chr1 49177149 49177150 rs186478 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop 960 chr1 49177544 49177545 rs320056 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 960 chr1 49179717 49179718 rs1385154 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,genotype-conflict 960 chr1 49179856 49179857 rs1385156 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop 960 chr1 49182247 49182248 rs11205526 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 560.000000,4448.000000, 0.111821,0.888179, maf-5-some-pop 960 chr1 49187170 49187171 rs753456 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 960 chr1 49189774 49189775 rs4926528 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4376.000000,632.000000, 0.873802,0.126198, maf-5-some-pop 960 chr1 49190233 49190234 rs1484406 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3057.000000,1951.000000, 0.610423,0.389577, maf-5-some-pop,maf-5-all-pops 960 chr1 49193393 49193394 rs1385152 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 G,T, 1149.000000,3859.000000, 0.229433,0.770567, maf-5-some-pop,genotype-conflict 960 chr1 49197567 49197568 rs6668399 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1594.000000,3414.000000, 0.318291,0.681709, maf-5-some-pop 960 chr1 49205933 49205934 rs6588053 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2267.000000,2741.000000, 0.452676,0.547324, maf-5-some-pop,maf-5-all-pops 960 chr1 49206304 49206305 rs6588054 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2174.000000,2834.000000, 0.434105,0.565895, maf-5-some-pop,maf-5-all-pops,genotype-conflict 960 chr1 49208617 49208618 rs1934393 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 2259.000000,2749.000000, 0.451078,0.548922, maf-5-some-pop,maf-5-all-pops 960 chr1 49210569 49210570 rs1473455 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2457.000000,2551.000000, 0.490615,0.509385, maf-5-some-pop,maf-5-all-pops 960 chr1 49215158 49215159 rs11588373 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 836.000000,4172.000000, 0.166933,0.833067, maf-5-some-pop 960 chr1 49215177 49215178 rs1872280 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 960 chr1 49216370 49216371 rs11586980 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 776.000000,4232.000000, 0.154952,0.845048, maf-5-some-pop 960 chr1 49219559 49219560 rs11578117 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4319.000000,689.000000, 0.862420,0.137580, maf-5-some-pop,genotype-conflict 960 chr1 49219784 49219785 rs4926753 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop 960 chr1 49220430 49220431 rs4926531 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3344.000000,1664.000000, 0.667732,0.332268, maf-5-some-pop,maf-5-all-pops 960 chr1 49220636 49220637 rs12407980 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop 960 chr1 49221302 49221303 rs12086219 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop 960 chr1 49221355 49221356 rs12096331 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop 960 chr1 49222527 49222528 rs10493135 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop 960 chr1 49227960 49227961 rs17375010 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop 960 chr1 49232074 49232075 rs1316396 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,C, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 960 chr1 49234375 49234376 rs1934395 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 960 chr1 49237593 49237594 rs11205538 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2029.000000,2979.000000, 0.405152,0.594848, maf-5-some-pop,maf-5-all-pops,genotype-conflict 960 chr1 49237974 49237975 rs1934377 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4872.000000,136.000000, 0.972843,0.027157, maf-5-some-pop 960 chr1 49239967 49239968 rs2153324 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2625.000000,2383.000000, 0.524161,0.475839, maf-5-some-pop,maf-5-all-pops 960 chr1 49240956 49240957 rs7520784 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2005.000000,3003.000000, 0.400359,0.599641, maf-5-some-pop,maf-5-all-pops,genotype-conflict 960 chr1 49241420 49241421 rs1934379 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop 960 chr1 49248983 49248984 rs10888622 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1980.000000,3028.000000, 0.395367,0.604633, maf-5-some-pop,maf-5-all-pops 960 chr1 49252455 49252456 rs4926759 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2865.000000,2143.000000, 0.572085,0.427915, maf-5-some-pop,maf-5-all-pops 960 chr1 49253186 49253187 rs12071587 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop 960 chr1 49255497 49255498 rs10736387 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop 960 chr1 49267570 49267571 rs4926760 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1821.000000,3187.000000, 0.363618,0.636382, maf-5-some-pop,maf-5-all-pops 960 chr1 49268065 49268066 rs7514802 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,genotype-conflict 960 chr1 49270279 49270280 rs1934397 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 280.000000,4728.000000,4728.000000,280.000000, 0.027955,0.472045,0.472045,0.027955, maf-5-some-pop 960 chr1 49270822 49270823 rs7538351 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 506.000000,4502.000000, 0.101038,0.898962, maf-5-some-pop 960 chr1 49271148 49271149 rs17104898 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop 960 chr1 49271310 49271311 rs12072244 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop 960 chr1 49273577 49273578 rs1934367 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop,genotype-conflict 960 chr1 49274046 49274047 rs1934368 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1229.000000,3779.000000, 0.245407,0.754593, maf-5-some-pop 960 chr1 49282056 49282057 rs12080260 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 26.000000,4982.000000, 0.005192,0.994808, maf-5-some-pop 961 chr1 49283411 49283412 rs2153323 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop,genotype-conflict 961 chr1 49288405 49288406 rs7533353 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2961.000000,2047.000000, 0.591254,0.408746, maf-5-some-pop,maf-5-all-pops 961 chr1 49288622 49288623 rs7545104 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop 961 chr1 49289851 49289852 rs12120183 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4529.000000,479.000000, 0.904353,0.095647, maf-5-some-pop 961 chr1 49292233 49292234 rs11205551 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2836.000000,2172.000000, 0.566294,0.433706, maf-5-some-pop,maf-5-all-pops 961 chr1 49292679 49292680 rs4926763 0 + C C A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,C, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop,genotype-conflict 961 chr1 49292931 49292932 rs12046594 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1758.000000,3250.000000, 0.351038,0.648962, maf-5-some-pop,maf-5-all-pops 961 chr1 49299497 49299498 rs10082274 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop 961 chr1 49300787 49300788 rs4484963 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,C, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 961 chr1 49308012 49308013 rs5015171 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop 961 chr1 49308087 49308088 rs12239493 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1098.000000,3910.000000, 0.219249,0.780751, maf-5-some-pop 961 chr1 49310058 49310059 rs12062167 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 961 chr1 49315865 49315866 rs4926765 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4154.000000,854.000000, 0.829473,0.170527, maf-5-some-pop 961 chr1 49316711 49316712 rs1890729 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop 961 chr1 49317184 49317185 rs17104994 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop 961 chr1 49317238 49317239 rs10788896 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop 961 chr1 49317657 49317658 rs7530277 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2066.000000,2942.000000, 0.412540,0.587460, maf-5-some-pop,maf-5-all-pops,genotype-conflict 961 chr1 49319166 49319167 rs10788897 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 669.000000,4339.000000, 0.133586,0.866414, maf-5-some-pop,genotype-conflict 961 chr1 49320831 49320832 rs2355689 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4154.000000,854.000000, 0.829473,0.170527, maf-5-some-pop 961 chr1 49324327 49324328 rs1934386 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 668.000000,4340.000000, 0.133387,0.866613, maf-5-some-pop 961 chr1 49325289 49325290 rs2153326 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1123.000000,3885.000000, 0.224241,0.775759, maf-5-some-pop,genotype-conflict 961 chr1 49325815 49325816 rs10493137 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop 961 chr1 49330803 49330804 rs6684570 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4339.000000,669.000000, 0.866414,0.133586, maf-5-some-pop 961 chr1 49331290 49331291 rs10888629 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4399.000000,609.000000, 0.878395,0.121605, maf-5-some-pop,genotype-conflict 961 chr1 49331465 49331466 rs10888631 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 669.000000,4339.000000, 0.133586,0.866414, maf-5-some-pop,genotype-conflict 961 chr1 49335329 49335330 rs6667780 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2588.000000,2420.000000, 0.516773,0.483227, maf-5-some-pop,maf-5-all-pops,genotype-conflict 961 chr1 49335596 49335597 rs9660009 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2634.000000,2374.000000, 0.525958,0.474042, maf-5-some-pop,maf-5-all-pops 961 chr1 49336455 49336456 rs5017079 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop 961 chr1 49340737 49340738 rs4363465 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,genotype-conflict 961 chr1 49342195 49342196 rs12032462 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop 961 chr1 49342415 49342416 rs12410131 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops 961 chr1 49343021 49343022 rs10157904 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop 961 chr1 49346827 49346828 rs4457622 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,T, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop 961 chr1 49352176 49352177 rs4285747 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3237.000000,1771.000000, 0.646366,0.353634, maf-5-some-pop,maf-5-all-pops 961 chr1 49352724 49352725 rs12023014 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3237.000000,1771.000000, 0.646366,0.353634, maf-5-some-pop,maf-5-all-pops 961 chr1 49354710 49354711 rs4926771 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1717.000000,3291.000000, 0.342851,0.657149, maf-5-some-pop,maf-5-all-pops 961 chr1 49355474 49355475 rs3127558 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 864.000000,4144.000000, 0.172524,0.827476, maf-5-some-pop 961 chr1 49355639 49355640 rs11578524 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,genotype-conflict 961 chr1 49359872 49359873 rs3121522 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2734.000000,2274.000000, 0.545927,0.454073, maf-5-some-pop,maf-5-all-pops 961 chr1 49360161 49360162 rs6657415 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2789.000000,2219.000000, 0.556909,0.443091, maf-5-some-pop,maf-5-all-pops 961 chr1 49360619 49360620 rs12043418 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop,maf-5-all-pops 961 chr1 49361630 49361631 rs3121523 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4142.000000,866.000000, 0.827077,0.172923, maf-5-some-pop 961 chr1 49374735 49374736 rs3121537 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 907.000000,4101.000000, 0.181110,0.818890, maf-5-some-pop 961 chr1 49375490 49375491 rs7519393 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4380.000000,628.000000, 0.874601,0.125399, maf-5-some-pop 961 chr1 49378800 49378801 rs12033195 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop 961 chr1 49379811 49379812 rs1578844 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 440.000000,4568.000000, 0.087859,0.912141, maf-5-some-pop,genotype-conflict 961 chr1 49380707 49380708 rs17105173 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop,genotype-conflict 961 chr1 49380903 49380904 rs11205571 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 961 chr1 49384054 49384055 rs1891846 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 164.000000,4844.000000,4844.000000,164.000000, 0.016374,0.483626,0.483626,0.016374, maf-5-some-pop,genotype-conflict 961 chr1 49385380 49385381 rs12084246 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 961 chr1 49385465 49385466 rs1108427 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4498.000000,510.000000,510.000000,4498.000000, 0.449081,0.050919,0.050919,0.449081, maf-5-some-pop 961 chr1 49390335 49390336 rs11205572 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop,genotype-conflict 961 chr1 49395819 49395820 rs12734540 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 961 chr1 49396935 49396936 rs17105226 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop 961 chr1 49396988 49396989 rs1343432 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 961 chr1 49398122 49398123 rs12035260 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop 961 chr1 49400814 49400815 rs726814 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 961 chr1 49401184 49401185 rs10788901 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1290.000000,3718.000000, 0.257588,0.742412, maf-5-some-pop,maf-5-all-pops 961 chr1 49407317 49407318 rs12127565 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 534.000000,4474.000000, 0.106629,0.893371, maf-5-some-pop 961 chr1 49407396 49407397 rs10493139 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4497.000000,511.000000,511.000000,4497.000000, 0.448982,0.051018,0.051018,0.448982, maf-5-some-pop 961 chr1 49408940 49408941 rs12040870 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4591.000000,417.000000, 0.916733,0.083267, maf-5-some-pop 962 chr1 49419314 49419315 rs10788902 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3619.000000,1389.000000, 0.722644,0.277356, maf-5-some-pop,maf-5-all-pops 962 chr1 49420829 49420830 rs11205576 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 43.000000,4965.000000, 0.008586,0.991414, maf-5-some-pop 962 chr1 49422093 49422094 rs3127547 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1396.000000,3612.000000, 0.278754,0.721246, maf-5-some-pop,genotype-conflict 962 chr1 49428302 49428303 rs12097797 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop 962 chr1 49428483 49428484 rs6669448 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop 962 chr1 49429424 49429425 rs7527167 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 900.000000,4108.000000, 0.179712,0.820288, maf-5-some-pop 962 chr1 49429436 49429437 rs10493138 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4666.000000,342.000000,342.000000,4666.000000, 0.465855,0.034145,0.034145,0.465855, maf-5-some-pop 962 chr1 49429904 49429905 rs17105327 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 962 chr1 49431908 49431909 rs3127550 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1368.000000,3640.000000, 0.273163,0.726837, maf-5-some-pop 962 chr1 49442022 49442023 rs3122291 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2535.000000,2473.000000, 0.506190,0.493810, maf-5-some-pop,maf-5-all-pops 962 chr1 49447084 49447085 rs3121512 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2801.000000,2207.000000, 0.559305,0.440695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 962 chr1 49448742 49448743 rs12068804 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,T, 18.000000,4990.000000, 0.003594,0.996406, maf-5-some-pop 962 chr1 49450703 49450704 rs3118215 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2645.000000,2363.000000, 0.528155,0.471845, maf-5-some-pop,maf-5-all-pops,genotype-conflict 962 chr1 49451271 49451272 rs3121514 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2611.000000,2397.000000, 0.521366,0.478634, maf-5-some-pop,maf-5-all-pops,genotype-conflict 962 chr1 49463800 49463801 rs3118223 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2276.000000,2732.000000, 0.454473,0.545527, maf-5-some-pop,maf-5-all-pops 962 chr1 49467061 49467062 rs3121273 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1523.000000,3485.000000,3485.000000,1523.000000, 0.152057,0.347943,0.347943,0.152057, maf-5-some-pop,genotype-conflict 962 chr1 49468024 49468025 rs3127556 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2361.000000,2647.000000, 0.471446,0.528554, maf-5-some-pop,maf-5-all-pops 962 chr1 49470765 49470766 rs3121518 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2735.000000,2273.000000, 0.546126,0.453874, maf-5-some-pop,maf-5-all-pops 962 chr1 49482113 49482114 rs12124687 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4356.000000,652.000000, 0.869808,0.130192, maf-5-some-pop 962 chr1 49482178 49482179 rs12094615 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP, 2 A,T, 11.000000,4997.000000, 0.002196,0.997804, maf-5-some-pop 962 chr1 49482702 49482703 rs6669433 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2670.000000,2338.000000, 0.533147,0.466853, maf-5-some-pop,maf-5-all-pops,genotype-conflict 962 chr1 49485171 49485172 rs12025201 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop 962 chr1 49490427 49490428 rs1079130 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2255.000000,2753.000000,2753.000000,2255.000000, 0.225140,0.274860,0.274860,0.225140, maf-5-some-pop,maf-5-all-pops 962 chr1 49505494 49505495 rs7520773 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 962 chr1 49506581 49506582 rs12035834 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop 962 chr1 49513772 49513773 rs6672750 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2100.000000,2908.000000, 0.419329,0.580671, maf-5-some-pop,maf-5-all-pops,genotype-conflict 962 chr1 49514636 49514637 rs17105427 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop 962 chr1 49514850 49514851 rs10888645 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4364.000000,644.000000, 0.871406,0.128594, maf-5-some-pop 962 chr1 49525464 49525465 rs7536787 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2819.000000,2189.000000, 0.562899,0.437101, maf-5-some-pop,maf-5-all-pops,genotype-conflict 962 chr1 49528318 49528319 rs3850871 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,genotype-conflict 962 chr1 49528402 49528403 rs17105472 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,C, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop 962 chr1 49529591 49529592 rs17369068 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 962 chr1 49541826 49541827 rs11205596 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 G,T, 4404.000000,604.000000, 0.879393,0.120607, maf-5-some-pop,genotype-conflict 963 chr1 49552035 49552036 rs6588238 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop 963 chr1 49565392 49565393 rs12059043 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 34.000000,4974.000000, 0.006789,0.993211, maf-5-some-pop 963 chr1 49566200 49566201 rs17105504 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 963 chr1 49566556 49566557 rs7527364 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2534.000000,2474.000000, 0.505990,0.494010, maf-5-some-pop,maf-5-all-pops 963 chr1 49573779 49573780 rs768328 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1107.000000,3901.000000,3901.000000,1107.000000, 0.110523,0.389477,0.389477,0.110523, maf-5-some-pop 963 chr1 49576499 49576500 rs662440 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops,genotype-conflict 963 chr1 49588463 49588464 rs684382 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2757.000000,2251.000000,2251.000000,2757.000000, 0.275260,0.224740,0.224740,0.275260, maf-5-some-pop,maf-5-all-pops,genotype-conflict 963 chr1 49589805 49589806 rs545621 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop 963 chr1 49591833 49591834 rs10493142 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 963 chr1 49591976 49591977 rs483330 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2913.000000,2095.000000, 0.581669,0.418331, maf-5-some-pop,maf-5-all-pops,genotype-conflict 963 chr1 49642697 49642698 rs354168 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2281.000000,2727.000000, 0.455471,0.544529, maf-5-some-pop,maf-5-all-pops,genotype-conflict 963 chr1 49655429 49655430 rs354169 0 - T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 963 chr1 49665435 49665436 rs354164 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2051.000000,2957.000000, 0.409545,0.590455, maf-5-some-pop,maf-5-all-pops 963 chr1 49665639 49665640 rs12036714 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1477.000000,3531.000000, 0.294928,0.705072, maf-5-some-pop 963 chr1 49666596 49666597 rs11806611 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 715.000000,4293.000000, 0.142772,0.857228, maf-5-some-pop 964 chr1 49715271 49715272 rs1346956 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop 964 chr1 49719902 49719903 rs6677300 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1968.000000,3040.000000, 0.392971,0.607029, maf-5-some-pop,maf-5-all-pops,genotype-conflict 964 chr1 49721078 49721079 rs6702810 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2264.000000,2744.000000, 0.452077,0.547923, maf-5-some-pop,maf-5-all-pops 964 chr1 49731367 49731368 rs17785166 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1506.000000,3502.000000, 0.300719,0.699281, maf-5-some-pop 964 chr1 49744699 49744700 rs171334 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,T, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 964 chr1 49754128 49754129 rs164825 0 - G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 375.000000,4633.000000,4633.000000,375.000000, 0.037440,0.462560,0.462560,0.037440, maf-5-some-pop 964 chr1 49765437 49765438 rs241501 0 + T T G/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 G,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop,genotype-conflict 964 chr1 49771825 49771826 rs12037079 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,genotype-conflict 964 chr1 49771852 49771853 rs241472 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3031.000000,1977.000000,1977.000000,3031.000000, 0.302616,0.197384,0.197384,0.302616, maf-5-some-pop,maf-5-all-pops 964 chr1 49774891 49774892 rs241497 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2555.000000,2453.000000, 0.510184,0.489816, maf-5-some-pop,maf-5-all-pops 964 chr1 49787195 49787196 rs1494461 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2473.000000,2535.000000, 0.493810,0.506190, maf-5-some-pop,maf-5-all-pops,genotype-conflict 964 chr1 49797803 49797804 rs17534292 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2964.000000,2044.000000, 0.591853,0.408147, maf-5-some-pop,maf-5-all-pops 964 chr1 49799320 49799321 rs17105629 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 964 chr1 49800062 49800063 rs17105631 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,genotype-conflict 964 chr1 49800691 49800692 rs241468 0 + A A A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,C, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 965 chr1 49817382 49817383 rs1338212 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 965 chr1 49822432 49822433 rs6659225 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3030.000000,1978.000000, 0.605032,0.394968, maf-5-some-pop,maf-5-all-pops 965 chr1 49823496 49823497 rs1338214 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1994.000000,3014.000000, 0.398163,0.601837, maf-5-some-pop,maf-5-all-pops,genotype-conflict 965 chr1 49831379 49831380 rs17098808 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 965 chr1 49838006 49838007 rs3014325 0 - C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 965 chr1 49847768 49847769 rs34447538 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 965 chr1 49847860 49847861 rs1338216 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2045.000000,2963.000000, 0.408347,0.591653, maf-5-some-pop,maf-5-all-pops 965 chr1 49861716 49861717 rs12082789 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop 965 chr1 49882540 49882541 rs41480045 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,AFFY,AFFY_GWHS, 2 A,G, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 965 chr1 49889905 49889906 rs12125425 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 965 chr1 49908643 49908644 rs1179484 0 + G G G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2035.000000,2973.000000, 0.406350,0.593650, maf-5-some-pop,maf-5-all-pops,genotype-conflict 965 chr1 49917083 49917084 rs1766377 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1164.000000,3844.000000, 0.232428,0.767572, maf-5-some-pop,genotype-conflict 966 chr1 49954700 49954701 rs11803165 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop 966 chr1 49958960 49958961 rs1185222 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2060.000000,2948.000000,2948.000000,2060.000000, 0.205671,0.294329,0.294329,0.205671, maf-5-some-pop,maf-5-all-pops 966 chr1 49995757 49995758 rs17105701 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4417.000000,591.000000, 0.881989,0.118011, maf-5-some-pop 966 chr1 49997673 49997674 rs1167309 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2935.000000,2073.000000,2073.000000,2935.000000, 0.293031,0.206969,0.206969,0.293031, maf-5-some-pop,maf-5-all-pops 966 chr1 50023955 50023956 rs2178085 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3585.000000,1423.000000, 0.715855,0.284145, maf-5-some-pop,genotype-conflict 966 chr1 50025533 50025534 rs1305490 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3852.000000,1156.000000, 0.769169,0.230831, maf-5-some-pop 966 chr1 50046740 50046741 rs4926538 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 763.000000,4245.000000, 0.152356,0.847644, maf-5-some-pop 966 chr1 50052683 50052684 rs17105712 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop 966 chr1 50053884 50053885 rs11587574 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4407.000000,601.000000, 0.879992,0.120008, maf-5-some-pop 967 chr1 50086217 50086218 rs12738636 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1209.000000,3799.000000, 0.241414,0.758586, maf-5-some-pop 967 chr1 50086358 50086359 rs6588353 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1203.000000,3805.000000, 0.240216,0.759784, maf-5-some-pop 967 chr1 50095384 50095385 rs1891667 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2969.000000,2039.000000, 0.592851,0.407149, maf-5-some-pop,maf-5-all-pops 967 chr1 50104641 50104642 rs2211459 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 565.000000,4443.000000, 0.112819,0.887181, maf-5-some-pop 967 chr1 50110849 50110850 rs1343161 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 2968.000000,2040.000000, 0.592652,0.407348, maf-5-some-pop,maf-5-all-pops 967 chr1 50161290 50161291 rs12735229 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3682.000000,1326.000000, 0.735224,0.264776, maf-5-some-pop 967 chr1 50185074 50185075 rs11205641 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop 968 chr1 50226068 50226069 rs7551832 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,ENSEMBL,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 968 chr1 50232172 50232173 rs6588357 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2475.000000,2533.000000, 0.494209,0.505791, maf-5-some-pop,maf-5-all-pops 968 chr1 50232650 50232651 rs6671257 0 + T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4380.000000,628.000000, 0.874601,0.125399, maf-5-some-pop 968 chr1 50250272 50250273 rs10888669 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2035.000000,2973.000000, 0.406350,0.593650, maf-5-some-pop,maf-5-all-pops 968 chr1 50263772 50263773 rs4926542 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2089.000000,2919.000000, 0.417133,0.582867, maf-5-some-pop,maf-5-all-pops 968 chr1 50290100 50290101 rs4926831 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3564.000000,1444.000000, 0.711661,0.288339, maf-5-some-pop 968 chr1 50290611 50290612 rs4244636 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2076.000000,2932.000000, 0.414537,0.585463, maf-5-some-pop,maf-5-all-pops 968 chr1 50308555 50308556 rs6675647 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,genotype-conflict 968 chr1 50312199 50312200 rs4582848 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2467.000000,2541.000000, 0.492612,0.507388, maf-5-some-pop,maf-5-all-pops 969 chr1 50335527 50335528 rs10736388 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2047.000000,2961.000000, 0.408746,0.591254, maf-5-some-pop,maf-5-all-pops,genotype-conflict 969 chr1 50349763 50349764 rs17105788 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 969 chr1 50360065 50360066 rs12022125 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3563.000000,1445.000000, 0.711462,0.288538, maf-5-some-pop 969 chr1 50366481 50366482 rs12067197 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop,genotype-conflict 969 chr1 50373691 50373692 rs11205659 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3840.000000,1168.000000, 0.766773,0.233227, maf-5-some-pop 969 chr1 50391139 50391140 rs11803306 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 G,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 969 chr1 50426541 50426542 rs7518987 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop 969 chr1 50453734 50453735 rs6685494 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,genotype-conflict 969 chr1 50456836 50456837 rs11576945 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4396.000000,612.000000, 0.877796,0.122204, maf-5-some-pop 970 chr1 50487845 50487846 rs7551576 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop 970 chr1 50528590 50528591 rs4259707 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 970 chr1 50532636 50532637 rs12087915 0 + G G A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 3 A,G,T, 115.000000,4886.000000,7.000000, 0.022963,0.975639,0.001398, maf-5-some-pop 970 chr1 50532968 50532969 rs4636517 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,SC_JCM, 2 C,T, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 970 chr1 50542921 50542922 rs12028252 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3390.000000,1618.000000, 0.676917,0.323083, maf-5-some-pop 970 chr1 50546809 50546810 rs4926547 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2473.000000,2535.000000, 0.493810,0.506190, maf-5-some-pop 970 chr1 50547165 50547166 rs4926548 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop 970 chr1 50561883 50561884 rs11806190 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3372.000000,1636.000000, 0.673323,0.326677, maf-5-some-pop,maf-5-all-pops 970 chr1 50570664 50570665 rs11205683 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 970 chr1 50580065 50580066 rs2494874 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM, 2 A,G, 4967.000000,41.000000, 0.991813,0.008187, maf-5-some-pop 970 chr1 50580822 50580823 rs4078484 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops 970 chr1 50582171 50582172 rs967582 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2492.000000,2516.000000,2516.000000,2492.000000, 0.248802,0.251198,0.251198,0.248802, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,genotype-conflict 970 chr1 50588664 50588665 rs2480693 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3057.000000,1951.000000,1951.000000,3057.000000, 0.305212,0.194788,0.194788,0.305212, maf-5-some-pop,maf-5-all-pops 970 chr1 50590519 50590520 rs9436445 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1484.000000,3524.000000, 0.296326,0.703674, maf-5-some-pop,maf-5-all-pops 970 chr1 50591404 50591405 rs2494884 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3522.000000,1486.000000, 0.703275,0.296725, maf-5-some-pop,maf-5-all-pops,microattr-tpa 970 chr1 50591564 50591565 rs6679408 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1143.000000,3865.000000, 0.228235,0.771765, maf-5-some-pop 970 chr1 50591850 50591851 rs4593875 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1446.000000,3562.000000, 0.288738,0.711262, maf-5-some-pop,maf-5-all-pops 971 chr1 50594584 50594585 rs7532622 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,C, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop 971 chr1 50594945 50594946 rs6588375 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1698.000000,3310.000000, 0.339058,0.660942, maf-5-some-pop,maf-5-all-pops,genotype-conflict 971 chr1 50595995 50595996 rs12567124 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2414.000000,2594.000000, 0.482029,0.517971, maf-5-some-pop,maf-5-all-pops 971 chr1 50600880 50600881 rs7523561 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop,maf-5-all-pops,genotype-conflict 971 chr1 50602494 50602495 rs6588376 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1432.000000,3576.000000, 0.285942,0.714058, maf-5-some-pop,maf-5-all-pops,genotype-conflict 971 chr1 50603994 50603995 rs12022778 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3644.000000,1364.000000, 0.727636,0.272364, maf-5-some-pop,maf-5-all-pops 971 chr1 50605336 50605337 rs3902720 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2413.000000,2595.000000, 0.481829,0.518171, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia 971 chr1 50613771 50613772 rs4926844 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop 971 chr1 50617549 50617550 rs17105968 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, maf-5-some-pop 971 chr1 50622024 50622025 rs12059725 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 15.000000,4993.000000, 0.002995,0.997005, 971 chr1 50639339 50639340 rs3119166 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop 971 chr1 50643665 50643666 rs3001635 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop,genotype-conflict 971 chr1 50646134 50646135 rs17105985 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,C, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop 971 chr1 50647025 50647026 rs3001636 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop,genotype-conflict 971 chr1 50648031 50648032 rs3001637 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 971 chr1 50649698 50649699 rs3009113 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3317.000000,1691.000000, 0.662340,0.337660, maf-5-some-pop,genotype-conflict 971 chr1 50650198 50650199 rs11580961 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 971 chr1 50652317 50652318 rs2494875 0 + T T G/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,genotype-conflict 971 chr1 50652644 50652645 rs10158995 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop 971 chr1 50656072 50656073 rs2988270 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4514.000000,494.000000, 0.901358,0.098642, maf-5-some-pop 971 chr1 50661137 50661138 rs17106009 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop,genotype-conflict 971 chr1 50661410 50661411 rs2480683 0 - C C A/G genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4089.000000,919.000000,919.000000,4089.000000, 0.408247,0.091753,0.091753,0.408247, maf-5-some-pop 971 chr1 50661687 50661688 rs2480682 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 628.000000,4380.000000,4380.000000,628.000000, 0.062700,0.437300,0.437300,0.062700, maf-5-some-pop,genotype-conflict 971 chr1 50661839 50661840 rs17381033 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 971 chr1 50662647 50662648 rs2480681 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4883.000000,125.000000,125.000000,4883.000000, 0.487520,0.012480,0.012480,0.487520, maf-5-some-pop 971 chr1 50668957 50668958 rs17106016 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop 971 chr1 50670092 50670093 rs3124467 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 971 chr1 50674402 50674403 rs2841868 0 + A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop 971 chr1 50676248 50676249 rs12092636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,SC_SNP,TISHKOFF, 2 A,G, 19.000000,4989.000000, 0.003794,0.996206, maf-5-some-pop,maf-5-all-pops 971 chr1 50684152 50684153 rs2494881 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 933.000000,4075.000000,4075.000000,933.000000, 0.093151,0.406849,0.406849,0.093151, maf-5-some-pop 971 chr1 50686433 50686434 rs2841870 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 730.000000,4278.000000,4278.000000,730.000000, 0.072883,0.427117,0.427117,0.072883, maf-5-some-pop,genotype-conflict 971 chr1 50694739 50694740 rs4926849 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop 971 chr1 50697069 50697070 rs12058881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 46.000000,4962.000000, 0.009185,0.990815, maf-5-some-pop 971 chr1 50698758 50698759 rs12081193 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 971 chr1 50702053 50702054 rs4926851 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop 971 chr1 50702697 50702698 rs4587603 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 971 chr1 50705463 50705464 rs4342890 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop 971 chr1 50709221 50709222 rs4926853 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 971 chr1 50709556 50709557 rs4244638 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop 971 chr1 50714688 50714689 rs6672295 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4341.000000,667.000000, 0.866813,0.133187, maf-5-some-pop 971 chr1 50716266 50716267 rs4437920 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 973.000000,4035.000000, 0.194289,0.805711, maf-5-some-pop,genotype-conflict 971 chr1 50717205 50717206 rs17381266 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 971 chr1 50717853 50717854 rs3009121 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 290.000000,4718.000000, 0.057907,0.942093, maf-5-some-pop,genotype-conflict 971 chr1 50719990 50719991 rs7543081 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 971 chr1 50722225 50722226 rs11799907 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop 971 chr1 50722988 50722989 rs3001644 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1263.000000,3745.000000,3745.000000,1263.000000, 0.126098,0.373902,0.373902,0.126098, maf-5-some-pop,maf-5-all-pops 972 chr1 50725238 50725239 rs3009123 0 + C C C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop 972 chr1 50726051 50726052 rs12122035 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop 972 chr1 50728979 50728980 rs3935057 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3740.000000,1268.000000,1268.000000,3740.000000, 0.373403,0.126597,0.126597,0.373403, maf-5-some-pop,maf-5-all-pops 972 chr1 50740074 50740075 rs1502857 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop 972 chr1 50754555 50754556 rs2938100 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 623.000000,4385.000000,4385.000000,623.000000, 0.062200,0.437800,0.437800,0.062200, maf-5-some-pop,genotype-conflict 972 chr1 50757884 50757885 rs3009109 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1651.000000,3357.000000, 0.329673,0.670327, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50765981 50765982 rs1875635 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop,maf-5-all-pops,microattr-tpa 972 chr1 50766111 50766112 rs41372644 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,JMKIDD_LAB, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop 972 chr1 50766489 50766490 rs12085445 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop 972 chr1 50769684 50769685 rs11205701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3728.000000,1280.000000, 0.744409,0.255591, maf-5-some-pop 972 chr1 50771881 50771882 rs12070259 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 972 chr1 50783102 50783103 rs4926855 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 27.000000,4981.000000, 0.005391,0.994609, 972 chr1 50787541 50787542 rs7339939 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2936.000000,2072.000000, 0.586262,0.413738, maf-5-some-pop,maf-5-all-pops 972 chr1 50788331 50788332 rs7516333 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2924.000000,2084.000000, 0.583866,0.416134, maf-5-some-pop,maf-5-all-pops 972 chr1 50789879 50789880 rs1875645 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1668.000000,3340.000000,3340.000000,1668.000000, 0.166534,0.333466,0.333466,0.166534, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50790926 50790927 rs12076943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop 972 chr1 50791464 50791465 rs12566635 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 972 chr1 50791765 50791766 rs12088501 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop 972 chr1 50794186 50794187 rs1948809 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2066.000000,2942.000000,2942.000000,2066.000000, 0.206270,0.293730,0.293730,0.206270, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50802854 50802855 rs4491095 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3259.000000,1749.000000, 0.650759,0.349241, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50808203 50808204 rs17386024 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1501.000000,3507.000000, 0.299720,0.700280, maf-5-some-pop,maf-5-all-pops 972 chr1 50808294 50808295 rs6657279 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 972 chr1 50809293 50809294 rs11205709 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2859.000000,2149.000000, 0.570887,0.429113, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50809973 50809974 rs3012088 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4467.000000,541.000000, 0.891973,0.108027, maf-5-some-pop,genotype-conflict 972 chr1 50814730 50814731 rs6660224 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop 972 chr1 50815782 50815783 rs17386142 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop 972 chr1 50816389 50816390 rs1109337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1610.000000,3398.000000, 0.321486,0.678514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50816575 50816576 rs2005544 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1667.000000,3341.000000, 0.332867,0.667133, maf-5-some-pop,maf-5-all-pops 972 chr1 50817552 50817553 rs11205711 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 972 chr1 50817700 50817701 rs11205712 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,genotype-conflict 972 chr1 50818086 50818087 rs1875641 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2813.000000,2195.000000,2195.000000,2813.000000, 0.280851,0.219149,0.219149,0.280851, maf-5-some-pop,maf-5-all-pops 972 chr1 50830954 50830955 rs3992627 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4095.000000,913.000000, 0.817692,0.182308, maf-5-some-pop 972 chr1 50835605 50835606 rs11205716 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1111.000000,3897.000000, 0.221845,0.778155, maf-5-some-pop,genotype-conflict 972 chr1 50837993 50837994 rs11806413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 972 chr1 50839157 50839158 rs12071347 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3998.000000,1010.000000, 0.798323,0.201677, maf-5-some-pop 972 chr1 50844172 50844173 rs2455636 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1013.000000,3995.000000,3995.000000,1013.000000, 0.101138,0.398862,0.398862,0.101138, maf-5-some-pop,maf-5-all-pops,genotype-conflict 972 chr1 50844928 50844929 rs7517924 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 972 chr1 50852768 50852769 rs2055491 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2324.000000,2684.000000,2684.000000,2324.000000, 0.232029,0.267971,0.267971,0.232029, maf-5-some-pop,maf-5-all-pops 973 chr1 50859744 50859745 rs4309025 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3801.000000,1207.000000, 0.758986,0.241014, maf-5-some-pop,genotype-conflict 973 chr1 50868683 50868684 rs11588379 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3872.000000,1136.000000, 0.773163,0.226837, maf-5-some-pop 973 chr1 50871574 50871575 rs2653907 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 974.000000,4034.000000,4034.000000,974.000000, 0.097244,0.402756,0.402756,0.097244, maf-5-some-pop,maf-5-all-pops 973 chr1 50871846 50871847 rs1502856 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2901.000000,2107.000000,2107.000000,2901.000000, 0.289637,0.210363,0.210363,0.289637, maf-5-some-pop,maf-5-all-pops 973 chr1 50872672 50872673 rs2484676 0 - A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 973 chr1 50906365 50906366 rs12076604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop,maf-5-all-pops 973 chr1 50909984 50909985 rs17106184 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop 973 chr1 50921121 50921122 rs12097873 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 973 chr1 50925735 50925736 rs11205725 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP, 2 C,T, 4987.000000,21.000000, 0.995807,0.004193, maf-5-some-pop 973 chr1 50927162 50927163 rs12088733 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,SC_SNP, 2 A,G, 4987.000000,21.000000, 0.995807,0.004193, maf-5-some-pop 973 chr1 50928364 50928365 rs12059469 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 973 chr1 50931101 50931102 rs12063722 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 973 chr1 50932288 50932289 rs13376558 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,WUGSC_SSAHASNP, 2 A,C, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 973 chr1 50935030 50935031 rs17106219 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop 973 chr1 50935621 50935622 rs3888843 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 78.000000,4930.000000,4930.000000,78.000000, 0.007788,0.492212,0.492212,0.007788, maf-5-some-pop 973 chr1 50937847 50937848 rs3827730 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 1880.000000,3128.000000, 0.375399,0.624601, maf-5-some-pop,microattr-tpa 973 chr1 50939761 50939762 rs17106230 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 274.000000,4734.000000, 0.054713,0.945288, maf-5-some-pop,genotype-conflict 973 chr1 50943369 50943370 rs17106235 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 973 chr1 50944633 50944634 rs1474784 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,maf-5-all-pops,genotype-conflict 973 chr1 50954097 50954098 rs12059456 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 973 chr1 50954127 50954128 rs3789577 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 973 chr1 50964039 50964040 rs1149791 0 - C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 973 chr1 50976305 50976306 rs11581155 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop 973 chr1 50980040 50980041 rs12747336 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop 974 chr1 51000609 51000610 rs11205731 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,genotype-conflict 974 chr1 51017468 51017469 rs17387164 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop,genotype-conflict 974 chr1 51025617 51025618 rs12083072 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4935.000000,73.000000, 0.985423,0.014577, 974 chr1 51025905 51025906 rs17106287 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 974 chr1 51026574 51026575 rs1499441 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 974 chr1 51029386 51029387 rs3789584 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2167.000000,2841.000000, 0.432708,0.567292, maf-5-some-pop,maf-5-all-pops,genotype-conflict 974 chr1 51029608 51029609 rs12118892 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4537.000000,471.000000, 0.905950,0.094049, maf-5-some-pop,genotype-conflict 974 chr1 51054321 51054322 rs3789586 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop,maf-5-all-pops,genotype-conflict 974 chr1 51054345 51054346 rs17106306 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 27.000000,4981.000000, 0.005391,0.994609, 974 chr1 51066949 51066950 rs12083078 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1061.000000,3947.000000, 0.211861,0.788139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 974 chr1 51076821 51076822 rs12568008 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,genotype-conflict 974 chr1 51078088 51078089 rs17387761 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 847.000000,4161.000000, 0.169129,0.830871, maf-5-some-pop 974 chr1 51078563 51078564 rs17106336 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop,genotype-conflict 974 chr1 51086336 51086337 rs10888700 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2166.000000,2842.000000, 0.432508,0.567492, maf-5-some-pop,maf-5-all-pops 974 chr1 51087464 51087465 rs11205743 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,genotype-conflict 974 chr1 51093689 51093690 rs11205746 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2814.000000,2194.000000, 0.561901,0.438099, maf-5-some-pop,maf-5-all-pops 975 chr1 51125159 51125160 rs6588391 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 4377.000000,631.000000, 0.874002,0.125998, maf-5-some-pop 975 chr1 51137379 51137380 rs17106353 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,C, 4981.000000,27.000000, 0.994609,0.005391, maf-5-some-pop 975 chr1 51149662 51149663 rs41478350 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,JMKIDD_LAB, 2 C,T, 28.000000,4980.000000, 0.005591,0.994409, 975 chr1 51150287 51150288 rs12088577 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 975 chr1 51174329 51174330 rs11205760 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,microattr-tpa,genotype-conflict 975 chr1 51188593 51188594 rs6672112 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1223.000000,3785.000000, 0.244209,0.755791, maf-5-some-pop 975 chr1 51188673 51188674 rs6680846 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 2151.000000,2857.000000, 0.429513,0.570487, maf-5-some-pop,maf-5-all-pops 975 chr1 51246154 51246155 rs12089747 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4405.000000,603.000000, 0.879593,0.120407, maf-5-some-pop,genotype-conflict 975 chr1 51248991 51248992 rs12076155 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 976 chr1 51252617 51252618 rs12075991 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop 976 chr1 51254605 51254606 rs12093909 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 976 chr1 51259040 51259041 rs6656410 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,genotype-conflict 976 chr1 51262959 51262960 rs7552837 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2831.000000,2177.000000, 0.565296,0.434704, maf-5-some-pop,maf-5-all-pops 976 chr1 51265283 51265284 rs17106369 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop 976 chr1 51267664 51267665 rs12087238 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,C, 4975.000000,33.000000, 0.993411,0.006589, maf-5-some-pop 976 chr1 51284904 51284905 rs11205773 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop 976 chr1 51299596 51299597 rs2095864 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 C,T, 4707.000000,301.000000, 0.939896,0.060104, maf-5-some-pop,genotype-conflict 976 chr1 51304833 51304834 rs12239279 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop 976 chr1 51319882 51319883 rs11205784 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop 976 chr1 51335093 51335094 rs1464081 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 560.000000,4448.000000,4448.000000,560.000000, 0.055911,0.444089,0.444089,0.055911, maf-5-some-pop,genotype-conflict 976 chr1 51347212 51347213 rs12088617 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 976 chr1 51368511 51368512 rs7525655 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop 976 chr1 51370116 51370117 rs12118519 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 354.000000,4654.000000, 0.070687,0.929313, maf-5-some-pop 977 chr1 51393644 51393645 rs12078434 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 414.000000,4594.000000, 0.082668,0.917332, maf-5-some-pop 977 chr1 51409655 51409656 rs12065719 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop 977 chr1 51413204 51413205 rs6695869 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2177.000000,2831.000000, 0.434704,0.565296, maf-5-some-pop,maf-5-all-pops 977 chr1 51427561 51427562 rs6588394 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,genotype-conflict 977 chr1 51438364 51438365 rs3176466 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4229.000000,779.000000, 0.844449,0.155551, maf-5-some-pop 977 chr1 51441960 51441961 rs12082656 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 977 chr1 51448158 51448159 rs12083782 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop 977 chr1 51449574 51449575 rs41324853 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop 977 chr1 51468551 51468552 rs11579642 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3532.000000,1476.000000, 0.705272,0.294728, maf-5-some-pop,maf-5-all-pops,genotype-conflict 977 chr1 51468753 51468754 rs17389502 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 671.000000,4337.000000, 0.133986,0.866014, maf-5-some-pop 977 chr1 51476002 51476003 rs11580026 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops 977 chr1 51477087 51477088 rs12092511 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop,maf-5-all-pops 978 chr1 51580636 51580637 rs6663781 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 582.000000,4426.000000, 0.116214,0.883786, maf-5-some-pop,genotype-conflict 978 chr1 51582591 51582592 rs6704076 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop,genotype-conflict 978 chr1 51582863 51582864 rs6704388 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop,maf-5-all-pops 978 chr1 51585990 51585991 rs12089896 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop 978 chr1 51604022 51604023 rs11801530 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4237.000000,771.000000, 0.846046,0.153954, maf-5-some-pop,genotype-conflict 978 chr1 51612622 51612623 rs6670506 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,T, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 978 chr1 51615022 51615023 rs11807353 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop 978 chr1 51616378 51616379 rs12074413 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3816.000000,1192.000000, 0.761981,0.238019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 978 chr1 51635556 51635557 rs1999230 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop 978 chr1 51640312 51640313 rs11580368 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 730.000000,4278.000000, 0.145767,0.854233, maf-5-some-pop 979 chr1 51644701 51644702 rs17106443 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 979 chr1 51677038 51677039 rs12091573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 17.000000,4991.000000, 0.003395,0.996605, maf-5-some-pop 979 chr1 51684979 51684980 rs12740598 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop 979 chr1 51708782 51708783 rs7526029 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop,maf-5-all-pops 979 chr1 51721278 51721279 rs17106471 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 979 chr1 51730053 51730054 rs12404033 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 3719.000000,1289.000000, 0.742612,0.257388, maf-5-some-pop,maf-5-all-pops 979 chr1 51748710 51748711 rs17106481 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop 979 chr1 51750908 51750909 rs474668 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 A,G, 1719.000000,3289.000000, 0.343251,0.656749, maf-5-some-pop 979 chr1 51751022 51751023 rs17106484 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,genotype-conflict 980 chr1 51784586 51784587 rs11577254 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4337.000000,671.000000, 0.866014,0.133986, maf-5-some-pop 980 chr1 51791541 51791542 rs6689528 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA-UK,KRIBB_YJKIM,SI_EXO,TISHKOFF, 2 A,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop 980 chr1 51797642 51797643 rs11205832 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop 980 chr1 51804674 51804675 rs11205835 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop 980 chr1 51804730 51804731 rs11205836 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop,maf-5-all-pops,microattr-tpa 980 chr1 51811323 51811324 rs6664609 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 980 chr1 51811626 51811627 rs6588405 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1205.000000,3803.000000, 0.240615,0.759385, maf-5-some-pop 980 chr1 51811929 51811930 rs2185592 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 4 A,C,G,T, 83.000000,4925.000000,4925.000000,83.000000, 0.008287,0.491713,0.491713,0.008287, maf-5-some-pop 980 chr1 51814273 51814274 rs6659736 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3867.000000,1141.000000, 0.772165,0.227835, maf-5-some-pop 980 chr1 51826920 51826921 rs17567 0 + T T C/T genomic single unknown 0 0 missense exact 1 29 1000GENOMES,ABI,AFFY,APPLERA_GI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WIAF-CSNP, 2 C,T, 1169.000000,3839.000000, 0.233427,0.766573, maf-5-some-pop 980 chr1 51831170 51831171 rs12069783 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 980 chr1 51837736 51837737 rs1105681 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3774.000000,1234.000000, 0.753594,0.246406, maf-5-some-pop,genotype-conflict 980 chr1 51858253 51858254 rs12567583 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM, 2 A,T, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop 980 chr1 51885147 51885148 rs10493153 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 980 chr1 51904504 51904505 rs17106577 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop,maf-5-all-pops 981 chr1 51931123 51931124 rs17397993 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 981 chr1 51932670 51932671 rs12023603 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 981 chr1 51938847 51938848 rs10493154 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 981 chr1 51964704 51964705 rs11808604 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 981 chr1 51981816 51981817 rs12735390 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,T, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop 981 chr1 51986679 51986680 rs12088459 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop 981 chr1 51997842 51997843 rs4437921 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop,genotype-conflict 981 chr1 51998362 51998363 rs12044074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop 981 chr1 52000930 52000931 rs1983842 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2646.000000,2362.000000,2362.000000,2646.000000, 0.264177,0.235823,0.235823,0.264177, maf-5-some-pop,maf-5-all-pops 981 chr1 52009518 52009519 rs6671270 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop 981 chr1 52010156 52010157 rs10399893 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop 981 chr1 52010202 52010203 rs10399889 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,genotype-conflict 981 chr1 52026025 52026026 rs12069152 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 346.000000,4662.000000, 0.069090,0.930911, maf-5-some-pop 981 chr1 52026383 52026384 rs7534689 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2027.000000,2981.000000, 0.404752,0.595248, maf-5-some-pop,maf-5-all-pops,genotype-conflict 981 chr1 52030378 52030379 rs12067434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop 981 chr1 52032788 52032789 rs12732738 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 981 chr1 52033855 52033856 rs12127044 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4159.000000,849.000000, 0.830471,0.169529, maf-5-some-pop 981 chr1 52034811 52034812 rs17394584 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4460.000000,548.000000, 0.890575,0.109425, maf-5-some-pop,genotype-conflict 982 chr1 52037696 52037697 rs11205864 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 3 C,G,T, 4067.000000,932.000000,9.000000, 0.812101,0.186102,0.001797, maf-5-some-pop 982 chr1 52049658 52049659 rs11205869 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3987.000000,1021.000000, 0.796126,0.203874, maf-5-some-pop,maf-5-all-pops 982 chr1 52059407 52059408 rs13375698 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 982 chr1 52069676 52069677 rs12065592 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop 982 chr1 52084460 52084461 rs12022714 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 982 chr1 52097579 52097580 rs6695853 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3798.000000,1210.000000, 0.758387,0.241613, maf-5-some-pop,maf-5-all-pops 982 chr1 52108796 52108797 rs7555392 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 982 chr1 52112525 52112526 rs11205875 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 982 chr1 52119197 52119198 rs7415684 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3798.000000,1210.000000, 0.758387,0.241613, maf-5-some-pop,maf-5-all-pops 982 chr1 52121906 52121907 rs10888732 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3769.000000,1239.000000, 0.752596,0.247404, maf-5-some-pop,maf-5-all-pops 982 chr1 52163906 52163907 rs12064225 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 19.000000,4989.000000, 0.003794,0.996206, maf-5-some-pop 982 chr1 52165224 52165225 rs12130751 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 3474.000000,1534.000000, 0.693690,0.306310, maf-5-some-pop 983 chr1 52173767 52173768 rs11809956 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4963.000000,45.000000, 0.991014,0.008986, maf-5-some-pop 983 chr1 52182959 52182960 rs12569262 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 983 chr1 52237188 52237189 rs11205887 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop,maf-5-all-pops 983 chr1 52255482 52255483 rs1417365 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL, 4 A,C,G,T, 75.000000,4933.000000,4933.000000,75.000000, 0.007488,0.492512,0.492512,0.007488, maf-5-some-pop 983 chr1 52256074 52256075 rs12023878 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop 983 chr1 52263881 52263882 rs1613430 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 267.000000,4741.000000,4741.000000,267.000000, 0.026657,0.473343,0.473343,0.026657, maf-5-some-pop 983 chr1 52264063 52264064 rs1770791 0 - A A C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3209.000000,1799.000000,1799.000000,3209.000000, 0.320387,0.179613,0.179613,0.320387, maf-5-some-pop 983 chr1 52264843 52264844 rs2747526 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 4095.000000,913.000000,913.000000,4095.000000, 0.408846,0.091154,0.091154,0.408846, maf-5-some-pop 983 chr1 52266119 52266120 rs2842581 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,genotype-conflict 983 chr1 52266241 52266242 rs8375 0 - G G A/C/G/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 SingleClassQuadAllelic 33 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2449.000000,2559.000000,2559.000000,2449.000000, 0.244509,0.255491,0.255491,0.244509, maf-5-some-pop,maf-5-all-pops 983 chr1 52266349 52266350 rs2273198 0 - C C A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 309.000000,4699.000000,4699.000000,309.000000, 0.030851,0.469149,0.469149,0.030851, maf-5-some-pop,genotype-conflict 983 chr1 52270055 52270056 rs7541944 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop 983 chr1 52281483 52281484 rs3765832 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4823.000000,185.000000,185.000000,4823.000000, 0.481530,0.018470,0.018470,0.481530, maf-5-some-pop 983 chr1 52297058 52297059 rs12123333 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,T, 406.000000,4602.000000, 0.081070,0.918930, maf-5-some-pop,genotype-conflict 984 chr1 52303004 52303005 rs12944 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,LEE,SSMP,TISHKOFF, 4 A,C,G,T, 659.000000,4349.000000,4349.000000,659.000000, 0.065795,0.434205,0.434205,0.065795, maf-5-some-pop 984 chr1 52307390 52307391 rs2495220 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 41.000000,4967.000000,4967.000000,41.000000, 0.004093,0.495907,0.495907,0.004093, maf-5-some-pop,genotype-conflict 984 chr1 52310755 52310756 rs6702037 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2192.000000,2816.000000, 0.437700,0.562300, maf-5-some-pop,genotype-conflict 984 chr1 52320558 52320559 rs7526552 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2499.000000,2509.000000, 0.499002,0.500998, maf-5-some-pop,maf-5-all-pops 984 chr1 52326024 52326025 rs11810600 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 984 chr1 52334046 52334047 rs6588415 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3347.000000,1661.000000, 0.668331,0.331669, maf-5-some-pop 984 chr1 52336136 52336137 rs12748434 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,genotype-conflict 984 chr1 52345759 52345760 rs2842586 0 - C C A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4051.000000,957.000000,957.000000,4051.000000, 0.404453,0.095547,0.095547,0.404453, maf-5-some-pop 984 chr1 52348348 52348349 rs11205901 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 984 chr1 52348387 52348388 rs17106862 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 984 chr1 52348423 52348424 rs17106866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4553.000000,455.000000, 0.909145,0.090855, maf-5-some-pop,genotype-conflict 984 chr1 52348768 52348769 rs11205902 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2233.000000,2775.000000, 0.445887,0.554113, maf-5-some-pop,maf-5-all-pops 984 chr1 52353448 52353449 rs3001778 0 + A A A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop 984 chr1 52354381 52354382 rs7521001 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2232.000000,2776.000000, 0.445687,0.554313, maf-5-some-pop,maf-5-all-pops 984 chr1 52361063 52361064 rs1832703 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 984 chr1 52373893 52373894 rs12730 0 - A A G/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4503.000000,505.000000,505.000000,4503.000000, 0.449581,0.050419,0.050419,0.449581, maf-5-some-pop,genotype-conflict 984 chr1 52374951 52374952 rs6698826 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1950.000000,3058.000000, 0.389377,0.610623, maf-5-some-pop,maf-5-all-pops 984 chr1 52375423 52375424 rs6588416 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3596.000000,1412.000000, 0.718051,0.281949, maf-5-some-pop,maf-5-all-pops 984 chr1 52376768 52376769 rs2244262 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 538.000000,4470.000000,4470.000000,538.000000, 0.053714,0.446286,0.446286,0.053714, maf-5-some-pop 984 chr1 52383082 52383083 rs2809925 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop 984 chr1 52392448 52392449 rs17106878 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 984 chr1 52396311 52396312 rs11205911 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1582.000000,3426.000000, 0.315895,0.684105, maf-5-some-pop,maf-5-all-pops 984 chr1 52402105 52402106 rs3765687 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2850.000000,2158.000000,2158.000000,2850.000000, 0.284545,0.215455,0.215455,0.284545, maf-5-some-pop,maf-5-all-pops 984 chr1 52406431 52406432 rs6588417 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop,maf-5-all-pops 984 chr1 52406871 52406872 rs1935289 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TSC-CSHL, 2 C,T, 1640.000000,3368.000000, 0.327476,0.672524, maf-5-some-pop,genotype-conflict 984 chr1 52414926 52414927 rs4557910 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop,maf-5-all-pops 984 chr1 52416077 52416078 rs2809942 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 601.000000,4407.000000, 0.120008,0.879992, maf-5-some-pop,genotype-conflict 984 chr1 52416139 52416140 rs2809943 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop,maf-5-all-pops,genotype-conflict 984 chr1 52418139 52418140 rs2795004 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 891.000000,4117.000000, 0.177915,0.822085, maf-5-some-pop,genotype-conflict 984 chr1 52422592 52422593 rs12738864 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop 984 chr1 52422862 52422863 rs2795007 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop 984 chr1 52425952 52425953 rs2809949 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4266.000000,742.000000, 0.851837,0.148163, maf-5-some-pop,genotype-conflict 985 chr1 52431811 52431812 rs10888744 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop,maf-5-all-pops 985 chr1 52447267 52447268 rs2809930 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 247.000000,4761.000000,4761.000000,247.000000, 0.024661,0.475339,0.475339,0.024661, maf-5-some-pop 985 chr1 52456836 52456837 rs12030388 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 985 chr1 52458252 52458253 rs10465800 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop 985 chr1 52466563 52466564 rs1167175 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,TISHKOFF, 2 G,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop 985 chr1 52468545 52468546 rs1167179 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop 985 chr1 52469593 52469594 rs2794997 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4812.000000,196.000000,196.000000,4812.000000, 0.480431,0.019569,0.019569,0.480431, maf-5-some-pop,genotype-conflict 985 chr1 52471352 52471353 rs12096890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 985 chr1 52474461 52474462 rs1167183 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM,KWOK,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 109.000000,4899.000000,4899.000000,109.000000, 0.010883,0.489117,0.489117,0.010883, maf-5-some-pop,genotype-conflict 985 chr1 52481984 52481985 rs2992177 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,genotype-conflict 985 chr1 52486103 52486104 rs7512076 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,genotype-conflict 985 chr1 52490417 52490418 rs4926906 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1484.000000,3524.000000, 0.296326,0.703674, maf-5-some-pop 985 chr1 52498860 52498861 rs2783175 0 - A A A/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 985 chr1 52499938 52499939 rs17106988 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop 985 chr1 52517803 52517804 rs2809956 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 384.000000,4624.000000,4624.000000,384.000000, 0.038339,0.461661,0.461661,0.038339, maf-5-some-pop,genotype-conflict 985 chr1 52519027 52519028 rs1932229 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1482.000000,3526.000000, 0.295927,0.704073, maf-5-some-pop,genotype-conflict 985 chr1 52519929 52519930 rs2809955 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 575.000000,4433.000000,4433.000000,575.000000, 0.057408,0.442592,0.442592,0.057408, maf-5-some-pop 985 chr1 52534003 52534004 rs6694230 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,genotype-conflict 985 chr1 52534431 52534432 rs2783199 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4433.000000,575.000000, 0.885184,0.114816, maf-5-some-pop,genotype-conflict 985 chr1 52535321 52535322 rs17173201 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop 985 chr1 52535494 52535495 rs2998737 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop,genotype-conflict 985 chr1 52547643 52547644 rs3015307 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4431.000000,577.000000,577.000000,4431.000000, 0.442392,0.057608,0.057608,0.442392, maf-5-some-pop,genotype-conflict 986 chr1 52565850 52565851 rs2985740 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 587.000000,4421.000000, 0.117212,0.882788, maf-5-some-pop 986 chr1 52569001 52569002 rs12039206 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop,genotype-conflict 986 chr1 52570186 52570187 rs11806346 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 986 chr1 52570615 52570616 rs3015294 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4894.000000,114.000000,114.000000,4894.000000, 0.488618,0.011382,0.011382,0.488618, maf-5-some-pop,genotype-conflict 986 chr1 52583610 52583611 rs6686632 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop 986 chr1 52584436 52584437 rs12027960 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop 986 chr1 52588297 52588298 rs17107057 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop 986 chr1 52605155 52605156 rs4926909 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops 986 chr1 52615676 52615677 rs11205934 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 986 chr1 52619889 52619890 rs553648 0 + A A A/G genomic single unknown 0 0 intron exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 108.000000,4900.000000, 0.021565,0.978435, maf-5-some-pop 986 chr1 52630295 52630296 rs7512531 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1416.000000,3592.000000, 0.282748,0.717252, maf-5-some-pop,maf-5-all-pops 986 chr1 52656493 52656494 rs7546049 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 986 chr1 52677788 52677789 rs12402304 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 369.000000,4639.000000, 0.073682,0.926318, maf-5-some-pop 987 chr1 52704329 52704330 rs3790525 0 - A A G/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 4936.000000,72.000000,72.000000,4936.000000, 0.492812,0.007188,0.007188,0.492812, maf-5-some-pop,genotype-conflict 987 chr1 52705426 52705427 rs3790522 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3585.000000,1423.000000,1423.000000,3585.000000, 0.357927,0.142073,0.142073,0.357927, maf-5-some-pop,maf-5-all-pops 987 chr1 52709479 52709480 rs10888749 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4098.000000,910.000000, 0.818291,0.181709, maf-5-some-pop 987 chr1 52718880 52718881 rs10493164 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop 987 chr1 52724004 52724005 rs11810532 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 987 chr1 52737496 52737497 rs17372640 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop 987 chr1 52745679 52745680 rs17364143 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop 987 chr1 52756657 52756658 rs2985372 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 243.000000,4765.000000,4765.000000,243.000000, 0.024261,0.475739,0.475739,0.024261, maf-5-some-pop 987 chr1 52764958 52764959 rs2820331 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3587.000000,1421.000000, 0.716254,0.283746, maf-5-some-pop,maf-5-all-pops,genotype-conflict 987 chr1 52771407 52771408 rs2753402 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4428.000000,580.000000, 0.884185,0.115815, maf-5-some-pop 987 chr1 52787774 52787775 rs2820329 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4607.000000,401.000000,401.000000,4607.000000, 0.459964,0.040036,0.040036,0.459964, maf-5-some-pop 987 chr1 52794841 52794842 rs11205950 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop 987 chr1 52798032 52798033 rs2762819 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3810.000000,1198.000000,1198.000000,3810.000000, 0.380391,0.119609,0.119609,0.380391, maf-5-some-pop 987 chr1 52801060 52801061 rs2820337 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 987 chr1 52811580 52811581 rs7517338 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3595.000000,1413.000000, 0.717851,0.282149, maf-5-some-pop,genotype-conflict 987 chr1 52819847 52819848 rs17107179 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4638.000000,370.000000, 0.926118,0.073882, maf-5-some-pop,genotype-conflict 988 chr1 52836138 52836139 rs9633423 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1615.000000,3393.000000, 0.322484,0.677516, maf-5-some-pop,genotype-conflict 988 chr1 52836735 52836736 rs10157619 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1537.000000,3471.000000, 0.306909,0.693091, maf-5-some-pop,genotype-conflict 988 chr1 52850780 52850781 rs7525335 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop 988 chr1 52854960 52854961 rs3087476 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,APPLERA_GI,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,UWGC, 4 A,C,G,T, 40.000000,4968.000000,4968.000000,40.000000, 0.003994,0.496006,0.496006,0.003994, 988 chr1 52855046 52855047 rs6672059 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop 988 chr1 52858999 52859000 rs3087486 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,UWGC, 4 A,C,G,T, 4949.000000,59.000000,59.000000,4949.000000, 0.494109,0.005891,0.005891,0.494109, maf-5-some-pop 988 chr1 52861870 52861871 rs3087477 0 - C C A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,CANCER-GENOME,CLINSEQ_SNP,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF,UWGC, 4 A,C,G,T, 133.000000,4875.000000,4875.000000,133.000000, 0.013279,0.486721,0.486721,0.013279, maf-5-some-pop,genotype-conflict 988 chr1 52861898 52861899 rs3087482 0 - T T A/C genomic single unknown 0 0 missense exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,UWGC, 4 A,C,G,T, 4948.000000,60.000000,60.000000,4948.000000, 0.494010,0.005990,0.005990,0.494010, maf-5-some-pop 988 chr1 52874113 52874114 rs6665054 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,genotype-conflict 988 chr1 52874786 52874787 rs10127490 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 988 chr1 52881350 52881351 rs12038084 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 988 chr1 52884681 52884682 rs17107208 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,genotype-conflict 988 chr1 52887952 52887953 rs17373044 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop 988 chr1 52889890 52889891 rs17107217 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,C, 4068.000000,940.000000, 0.812300,0.187700, maf-5-some-pop 988 chr1 52897394 52897395 rs10493166 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 988 chr1 52898228 52898229 rs11803338 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 291.000000,4717.000000, 0.058107,0.941893, maf-5-some-pop 988 chr1 52904409 52904410 rs12407818 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 988 chr1 52915792 52915793 rs12239281 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4506.000000,502.000000, 0.899760,0.100240, maf-5-some-pop 988 chr1 52916370 52916371 rs7554003 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,genotype-conflict 988 chr1 52928447 52928448 rs13376564 0 + T T A/T genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,WUGSC_SSAHASNP, 2 A,T, 46.000000,4962.000000, 0.009185,0.990815, genotype-conflict 988 chr1 52936657 52936658 rs17107236 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,genotype-conflict 989 chr1 52972638 52972639 rs6588429 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1844.000000,3164.000000, 0.368211,0.631789, maf-5-some-pop,maf-5-all-pops 989 chr1 52972920 52972921 rs7517892 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 989 chr1 52973209 52973210 rs997915 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4510.000000,498.000000, 0.900559,0.099441, maf-5-some-pop,genotype-conflict 989 chr1 52984182 52984183 rs11205967 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop 989 chr1 52984667 52984668 rs6683183 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 989 chr1 52986977 52986978 rs7553627 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1903.000000,3105.000000, 0.379992,0.620008, maf-5-some-pop,maf-5-all-pops 989 chr1 53021960 53021961 rs6588430 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,T, 4658.000000,350.000000, 0.930112,0.069888, maf-5-some-pop,genotype-conflict 989 chr1 53032717 53032718 rs11582972 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop 989 chr1 53039245 53039246 rs17107307 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4647.000000,361.000000, 0.927915,0.072085, maf-5-some-pop 989 chr1 53039602 53039603 rs17373814 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 364.000000,4644.000000, 0.072684,0.927316, maf-5-some-pop 989 chr1 53049830 53049831 rs835353 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP, 2 G,T, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop 989 chr1 53050460 53050461 rs6679249 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 731.000000,4277.000000, 0.145966,0.854034, maf-5-some-pop 989 chr1 53051019 53051020 rs835344 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2267.000000,2741.000000, 0.452676,0.547324, maf-5-some-pop,maf-5-all-pops,genotype-conflict 989 chr1 53052958 53052959 rs12120268 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop,genotype-conflict 989 chr1 53059105 53059106 rs835337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 943.000000,4065.000000, 0.188299,0.811701, maf-5-some-pop,maf-5-all-pops 989 chr1 53063086 53063087 rs1097233 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP, 2 C,G, 4415.000000,593.000000, 0.881589,0.118411, maf-5-some-pop 989 chr1 53063912 53063913 rs835340 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 613.000000,4395.000000, 0.122404,0.877596, maf-5-some-pop 989 chr1 53064011 53064012 rs835341 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2087.000000,2921.000000, 0.416733,0.583267, maf-5-some-pop,maf-5-all-pops 989 chr1 53064033 53064034 rs835342 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3004.000000,2004.000000, 0.599840,0.400160, maf-5-some-pop,maf-5-all-pops,genotype-conflict 989 chr1 53069513 53069514 rs3753753 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 901.000000,4107.000000, 0.179912,0.820088, maf-5-some-pop,maf-5-all-pops 989 chr1 53073326 53073327 rs946154 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 3516.000000,1492.000000, 0.702077,0.297923, maf-5-some-pop,maf-5-all-pops,genotype-conflict 989 chr1 53079522 53079523 rs6682886 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 989 chr1 53080007 53080008 rs6686035 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 G,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 989 chr1 53081584 53081585 rs6671552 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop,genotype-conflict 990 chr1 53085336 53085337 rs6672470 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4647.000000,361.000000, 0.927915,0.072085, maf-5-some-pop,maf-5-all-pops 990 chr1 53086039 53086040 rs6688451 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1389.000000,3619.000000, 0.277356,0.722644, maf-5-some-pop,genotype-conflict 990 chr1 53094801 53094802 rs2050696 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3880.000000,1128.000000,1128.000000,3880.000000, 0.387380,0.112620,0.112620,0.387380, maf-5-some-pop,maf-5-all-pops 990 chr1 53097580 53097581 rs6670797 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 637.000000,4371.000000, 0.127196,0.872804, maf-5-some-pop 990 chr1 53102526 53102527 rs494030 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1986.000000,3022.000000, 0.396565,0.603435, maf-5-some-pop,maf-5-all-pops,genotype-conflict 990 chr1 53103041 53103042 rs11583225 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 990 chr1 53104037 53104038 rs10493169 0 - C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 990 chr1 53107543 53107544 rs670978 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2919.000000,2089.000000,2089.000000,2919.000000, 0.291434,0.208566,0.208566,0.291434, maf-5-some-pop,maf-5-all-pops 990 chr1 53111723 53111724 rs6682749 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 921.000000,4087.000000, 0.183906,0.816094, maf-5-some-pop,genotype-conflict 990 chr1 53111803 53111804 rs11205987 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3356.000000,1652.000000, 0.670128,0.329872, maf-5-some-pop,maf-5-all-pops,genotype-conflict 990 chr1 53112409 53112410 rs2485917 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4179.000000,829.000000,829.000000,4179.000000, 0.417232,0.082768,0.082768,0.417232, maf-5-some-pop,maf-5-all-pops 990 chr1 53114735 53114736 rs706497 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2621.000000,2387.000000, 0.523363,0.476637, maf-5-some-pop 990 chr1 53120302 53120303 rs12065233 0 + C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 990 chr1 53125599 53125600 rs681865 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2183.000000,2825.000000,2825.000000,2183.000000, 0.217951,0.282049,0.282049,0.217951, maf-5-some-pop,maf-5-all-pops 990 chr1 53125617 53125618 rs12093164 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop 990 chr1 53126154 53126155 rs269324 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1987.000000,3021.000000,3021.000000,1987.000000, 0.198383,0.301617,0.301617,0.198383, maf-5-some-pop,maf-5-all-pops,genotype-conflict 990 chr1 53133865 53133866 rs269319 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3842.000000,1166.000000,1166.000000,3842.000000, 0.383586,0.116414,0.116414,0.383586, maf-5-some-pop 990 chr1 53137111 53137112 rs6672879 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4076.000000,932.000000, 0.813898,0.186102, maf-5-some-pop 990 chr1 53137327 53137328 rs12067454 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3709.000000,1299.000000, 0.740615,0.259385, maf-5-some-pop 990 chr1 53138455 53138456 rs269314 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1036.000000,3972.000000,3972.000000,1036.000000, 0.103435,0.396565,0.396565,0.103435, maf-5-some-pop 990 chr1 53141669 53141670 rs269308 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2189.000000,2819.000000,2819.000000,2189.000000, 0.218550,0.281450,0.281450,0.218550, maf-5-some-pop,maf-5-all-pops 990 chr1 53142283 53142284 rs269306 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1054.000000,3954.000000,3954.000000,1054.000000, 0.105232,0.394768,0.394768,0.105232, maf-5-some-pop 990 chr1 53145342 53145343 rs873844 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 4958.000000,50.000000, 0.990016,0.009984, 990 chr1 53150605 53150606 rs7555480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop 990 chr1 53159349 53159350 rs12063406 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop,maf-5-all-pops 990 chr1 53161619 53161620 rs448788 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop,genotype-conflict 990 chr1 53169017 53169018 rs269286 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3127.000000,1881.000000,1881.000000,3127.000000, 0.312200,0.187800,0.187800,0.312200, maf-5-some-pop 990 chr1 53173051 53173052 rs440871 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1496.000000,3512.000000,3512.000000,1496.000000, 0.149361,0.350639,0.350639,0.149361, maf-5-some-pop 990 chr1 53179375 53179376 rs387436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1233.000000,3775.000000, 0.246206,0.753794, maf-5-some-pop,genotype-conflict 990 chr1 53179804 53179805 rs425520 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3771.000000,1237.000000, 0.752995,0.247005, maf-5-some-pop 990 chr1 53180564 53180565 rs6703127 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3770.000000,1238.000000, 0.752796,0.247204, maf-5-some-pop 990 chr1 53180715 53180716 rs6703281 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3309.000000,1699.000000, 0.660743,0.339257, maf-5-some-pop,genotype-conflict 990 chr1 53183446 53183447 rs146750 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 990 chr1 53183512 53183513 rs416968 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3439.000000,1569.000000,1569.000000,3439.000000, 0.343351,0.156649,0.156649,0.343351, maf-5-some-pop,genotype-conflict 990 chr1 53189815 53189816 rs1332776 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2623.000000,2385.000000,2385.000000,2623.000000, 0.261881,0.238119,0.238119,0.261881, maf-5-some-pop,maf-5-all-pops 990 chr1 53193575 53193576 rs7548832 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3521.000000,1487.000000, 0.703075,0.296925, maf-5-some-pop 990 chr1 53193795 53193796 rs12095247 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop 990 chr1 53193827 53193828 rs12069504 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, maf-5-some-pop,maf-5-all-pops 990 chr1 53198241 53198242 rs4926573 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3969.000000,1039.000000, 0.792532,0.207468, maf-5-some-pop 990 chr1 53203663 53203664 rs6661196 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2322.000000,2686.000000, 0.463658,0.536342, maf-5-some-pop,maf-5-all-pops 990 chr1 53209441 53209442 rs6588439 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 1012.000000,3996.000000, 0.202077,0.797923, maf-5-some-pop,genotype-conflict 990 chr1 53210162 53210163 rs4926928 0 + A A A/C genomic single unknown 0 0 intron exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1311.000000,3697.000000, 0.261781,0.738219, maf-5-some-pop,genotype-conflict 990 chr1 53210887 53210888 rs10157120 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1311.000000,3697.000000, 0.261781,0.738219, maf-5-some-pop 990 chr1 53211002 53211003 rs10158562 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 991 chr1 53218975 53218976 rs11206007 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 991 chr1 53225362 53225363 rs4926931 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop 991 chr1 53230580 53230581 rs12038438 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop 991 chr1 53233373 53233374 rs7518390 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3581.000000,1427.000000, 0.715056,0.284944, maf-5-some-pop,genotype-conflict 991 chr1 53240828 53240829 rs10888755 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3578.000000,1430.000000, 0.714457,0.285543, maf-5-some-pop,genotype-conflict 991 chr1 53250212 53250213 rs2065477 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1376.000000,3632.000000,3632.000000,1376.000000, 0.137380,0.362620,0.362620,0.137380, maf-5-some-pop 991 chr1 53251859 53251860 rs505444 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1425.000000,3583.000000,3583.000000,1425.000000, 0.142272,0.357728,0.357728,0.142272, maf-5-some-pop 991 chr1 53252968 53252969 rs7538076 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 991 chr1 53257410 53257411 rs12080613 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,CSHL-HAPMAP,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 G,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,genotype-conflict 991 chr1 53264485 53264486 rs12059877 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4076.000000,932.000000, 0.813898,0.186102, maf-5-some-pop 991 chr1 53270009 53270010 rs562182 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3578.000000,1430.000000, 0.714457,0.285543, maf-5-some-pop 991 chr1 53277850 53277851 rs7530908 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 G,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 991 chr1 53286966 53286967 rs12731800 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 991 chr1 53320273 53320274 rs480299 0 - G G A/C genomic single unknown 0 0 missense exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2951.000000,2057.000000,2057.000000,2951.000000, 0.294629,0.205371,0.205371,0.294629, maf-5-some-pop,maf-5-all-pops 991 chr1 53320484 53320485 rs7524175 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,G, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop 991 chr1 53321947 53321948 rs554301 0 - A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 991 chr1 53330457 53330458 rs514406 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3247.000000,1761.000000,1761.000000,3247.000000, 0.324181,0.175819,0.175819,0.324181, maf-5-some-pop,genotype-conflict 991 chr1 53336736 53336737 rs514881 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2137.000000,2871.000000, 0.426717,0.573283, maf-5-some-pop,maf-5-all-pops,genotype-conflict 991 chr1 53336858 53336859 rs515857 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1843.000000,3165.000000, 0.368011,0.631989, maf-5-some-pop 991 chr1 53343879 53343880 rs512723 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3582.000000,1426.000000,1426.000000,3582.000000, 0.357628,0.142372,0.142372,0.357628, maf-5-some-pop,genotype-conflict 991 chr1 53344906 53344907 rs499195 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1423.000000,3585.000000,3585.000000,1423.000000, 0.142073,0.357927,0.357927,0.142073, maf-5-some-pop,genotype-conflict 991 chr1 53344975 53344976 rs481440 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2814.000000,2194.000000,2194.000000,2814.000000, 0.280950,0.219050,0.219050,0.280950, maf-5-some-pop,maf-5-all-pops,genotype-conflict 992 chr1 53361927 53361928 rs1044365 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CGAP-GAI,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4687.000000,321.000000,321.000000,4687.000000, 0.467951,0.032049,0.032049,0.467951, maf-5-some-pop 992 chr1 53385291 53385292 rs12094972 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,genotype-conflict 992 chr1 53398559 53398560 rs12088520 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 992 chr1 53409572 53409573 rs12076197 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 992 chr1 53410387 53410388 rs17107484 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop 992 chr1 53412212 53412213 rs11206047 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop 992 chr1 53412768 53412769 rs12060111 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,G, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop 992 chr1 53424306 53424307 rs13375034 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 514.000000,4494.000000, 0.102636,0.897364, maf-5-some-pop 992 chr1 53424707 53424708 rs12090238 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop 992 chr1 53453929 53453930 rs7528867 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4048.000000,960.000000, 0.808307,0.191693, maf-5-some-pop 992 chr1 53455898 53455899 rs11206061 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 955.000000,4053.000000, 0.190695,0.809305, maf-5-some-pop 992 chr1 53457007 53457008 rs17107527 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 992 chr1 53457469 53457470 rs7541215 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4333.000000,675.000000, 0.865216,0.134784, maf-5-some-pop 992 chr1 53459361 53459362 rs6697076 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop 992 chr1 53459689 53459690 rs11581638 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop,genotype-conflict 992 chr1 53462337 53462338 rs17107541 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 992 chr1 53469715 53469716 rs6662480 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,maf-5-all-pops 992 chr1 53476969 53476970 rs6679819 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2019.000000,2989.000000, 0.403155,0.596845, maf-5-some-pop,maf-5-all-pops,genotype-conflict 993 chr1 53480744 53480745 rs7529265 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,CNG,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1040.000000,3968.000000, 0.207668,0.792332, maf-5-some-pop 993 chr1 53488563 53488564 rs7546714 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,T, 2019.000000,2989.000000, 0.403155,0.596845, maf-5-some-pop,maf-5-all-pops,genotype-conflict 993 chr1 53489131 53489132 rs7555050 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop 993 chr1 53489295 53489296 rs7549603 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,maf-5-all-pops,genotype-conflict 993 chr1 53489667 53489668 rs17107624 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop 993 chr1 53493821 53493822 rs17107643 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 G,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 993 chr1 53494878 53494879 rs17107654 0 + C C C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 C,G,T, 3963.000000,1042.000000,3.000000, 0.791334,0.208067,0.000599, maf-5-some-pop,genotype-conflict 993 chr1 53510974 53510975 rs6588458 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2030.000000,2978.000000, 0.405351,0.594649, maf-5-some-pop,maf-5-all-pops,genotype-conflict 993 chr1 53512284 53512285 rs13376501 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop 993 chr1 53512518 53512519 rs11588200 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 3980.000000,1028.000000, 0.794728,0.205272, maf-5-some-pop 993 chr1 53513981 53513982 rs2896792 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop 993 chr1 53514496 53514497 rs6664845 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 3980.000000,1028.000000, 0.794728,0.205272, maf-5-some-pop 993 chr1 53514515 53514516 rs3766762 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,genotype-conflict 993 chr1 53515100 53515101 rs4926946 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1028.000000,3980.000000, 0.205272,0.794728, maf-5-some-pop 993 chr1 53515304 53515305 rs3766764 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1346.000000,3662.000000, 0.268770,0.731230, maf-5-some-pop,maf-5-all-pops 993 chr1 53515993 53515994 rs12095520 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 993 chr1 53516382 53516383 rs10888761 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 15 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,TISHKOFF, 2 A,C, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 993 chr1 53517996 53517997 rs17107767 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1028.000000,3980.000000, 0.205272,0.794728, maf-5-some-pop 993 chr1 53518048 53518049 rs12096165 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1028.000000,3980.000000, 0.205272,0.794728, maf-5-some-pop,genotype-conflict 993 chr1 53530022 53530023 rs17107792 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 993 chr1 53530486 53530487 rs11584649 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop 993 chr1 53530616 53530617 rs17107803 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4042.000000,966.000000, 0.807109,0.192891, maf-5-some-pop 993 chr1 53532534 53532535 rs17107806 0 + G G C/G genomic single unknown 0 0 intron,missense exact 1 13 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop 993 chr1 53532608 53532609 rs11580093 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 993 chr1 53532919 53532920 rs17107812 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 993 chr1 53534356 53534357 rs17107817 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 993 chr1 53534587 53534588 rs4926950 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 993 chr1 53534686 53534687 rs6697308 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop 993 chr1 53537832 53537833 rs12568971 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 3362.000000,1646.000000, 0.671326,0.328674, maf-5-some-pop,genotype-conflict 993 chr1 53546069 53546070 rs12723536 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4247.000000,761.000000, 0.848043,0.151957, maf-5-some-pop 993 chr1 53550186 53550187 rs899974 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 30 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop,genotype-conflict 993 chr1 53551292 53551293 rs1288397 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4060.000000,948.000000, 0.810703,0.189297, maf-5-some-pop,genotype-conflict 993 chr1 53551879 53551880 rs12042673 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop 993 chr1 53554304 53554305 rs2306459 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1289.000000,3719.000000, 0.257388,0.742612, maf-5-some-pop,genotype-conflict 993 chr1 53554405 53554406 rs11583585 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 672.000000,4336.000000, 0.134185,0.865815, maf-5-some-pop 993 chr1 53559502 53559503 rs12031385 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 641.000000,4367.000000, 0.127995,0.872005, maf-5-some-pop 993 chr1 53564585 53564586 rs1288418 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop,genotype-conflict 993 chr1 53564604 53564605 rs10465822 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4003.000000,1005.000000, 0.799321,0.200679, maf-5-some-pop,maf-5-all-pops 993 chr1 53567720 53567721 rs11206093 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 993 chr1 53569398 53569399 rs1288420 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 644.000000,4364.000000, 0.128594,0.871406, maf-5-some-pop,genotype-conflict 993 chr1 53569431 53569432 rs2242275 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop 993 chr1 53569491 53569492 rs4926953 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 993 chr1 53570658 53570659 rs11206101 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 823.000000,4185.000000, 0.164337,0.835663, maf-5-some-pop,genotype-conflict 993 chr1 53577283 53577284 rs1288372 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2707.000000,2301.000000, 0.540535,0.459465, maf-5-some-pop,maf-5-all-pops 993 chr1 53577649 53577650 rs17377135 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 993 chr1 53577700 53577701 rs922682 0 + C C C/T genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop 993 chr1 53578173 53578174 rs3766779 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 993 chr1 53583170 53583171 rs1288384 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop 993 chr1 53586379 53586380 rs936642 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 560.000000,4448.000000,4448.000000,560.000000, 0.055911,0.444089,0.444089,0.055911, maf-5-some-pop 993 chr1 53586934 53586935 rs6694555 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop 993 chr1 53587178 53587179 rs6694834 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3080.000000,1928.000000, 0.615016,0.384984, maf-5-some-pop,maf-5-all-pops 993 chr1 53588442 53588443 rs1769303 0 + A A A/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 993 chr1 53590422 53590423 rs3766792 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3635.000000,1373.000000, 0.725839,0.274161, maf-5-some-pop,maf-5-all-pops 993 chr1 53590629 53590630 rs3766793 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1666.000000,3342.000000, 0.332668,0.667332, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 993 chr1 53593016 53593017 rs1679965 0 - T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 993 chr1 53593812 53593813 rs899976 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1439.000000,3569.000000,3569.000000,1439.000000, 0.143670,0.356330,0.356330,0.143670, maf-5-some-pop,maf-5-all-pops 993 chr1 53598103 53598104 rs4926955 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3495.000000,1513.000000, 0.697883,0.302117, maf-5-some-pop,maf-5-all-pops 993 chr1 53598125 53598126 rs10888767 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3083.000000,1925.000000, 0.615615,0.384385, maf-5-some-pop,maf-5-all-pops 993 chr1 53598160 53598161 rs1288357 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 365.000000,4643.000000,4643.000000,365.000000, 0.036442,0.463558,0.463558,0.036442, maf-5-some-pop 993 chr1 53599032 53599033 rs1288356 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 75.000000,4933.000000,4933.000000,75.000000, 0.007488,0.492512,0.492512,0.007488, maf-5-some-pop 993 chr1 53600349 53600350 rs1288354 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 382.000000,4626.000000,4626.000000,382.000000, 0.038139,0.461861,0.461861,0.038139, maf-5-some-pop,genotype-conflict 993 chr1 53605883 53605884 rs1288367 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1645.000000,3363.000000,3363.000000,1645.000000, 0.164237,0.335763,0.335763,0.164237, maf-5-some-pop,maf-5-all-pops 993 chr1 53606079 53606080 rs11206109 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3752.000000,1256.000000, 0.749201,0.250799, maf-5-some-pop,maf-5-all-pops 993 chr1 53608424 53608425 rs34418279 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 1236.000000,3772.000000, 0.246805,0.753195, maf-5-some-pop,maf-5-all-pops 994 chr1 53610093 53610094 rs11206113 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2049.000000,2959.000000, 0.409145,0.590855, maf-5-some-pop,maf-5-all-pops 994 chr1 53610371 53610372 rs1320594 0 + C C A/C genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2106.000000,2902.000000, 0.420527,0.579473, maf-5-some-pop,maf-5-all-pops 994 chr1 53610851 53610852 rs2486634 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop,maf-5-all-pops 994 chr1 53613906 53613907 rs6696614 0 + A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53614879 53614880 rs1628297 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2523.000000,2485.000000, 0.503794,0.496206, maf-5-some-pop,maf-5-all-pops 994 chr1 53615540 53615541 rs10888768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 994 chr1 53619481 53619482 rs7556421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1837.000000,3171.000000, 0.366813,0.633187, maf-5-some-pop,microattr-tpa,genotype-conflict 994 chr1 53619501 53619502 rs1481043 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,maf-5-all-pops 994 chr1 53620295 53620296 rs11206119 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 994 chr1 53620832 53620833 rs6689888 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3761.000000,1247.000000, 0.750998,0.249002, maf-5-some-pop 994 chr1 53621344 53621345 rs1288344 0 + G G G/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 756.000000,4252.000000, 0.150958,0.849042, maf-5-some-pop,genotype-conflict 994 chr1 53622092 53622093 rs1288347 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops 994 chr1 53624337 53624338 rs1288351 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,genotype-conflict 994 chr1 53625038 53625039 rs4926960 0 + G G G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2175.000000,2833.000000, 0.434305,0.565695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53625448 53625449 rs6588466 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 G,T, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop,maf-5-all-pops 994 chr1 53626013 53626014 rs6682324 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop,maf-5-all-pops 994 chr1 53628060 53628061 rs1288340 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4513.000000,495.000000,495.000000,4513.000000, 0.450579,0.049421,0.049421,0.450579, maf-5-some-pop,genotype-conflict 994 chr1 53628561 53628562 rs1288339 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 481.000000,4527.000000,4527.000000,481.000000, 0.048023,0.451977,0.451977,0.048023, maf-5-some-pop 994 chr1 53630913 53630914 rs1288333 0 - G G C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 994 chr1 53630959 53630960 rs1288332 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1931.000000,3077.000000,3077.000000,1931.000000, 0.192792,0.307208,0.307208,0.192792, maf-5-some-pop,maf-5-all-pops 994 chr1 53631048 53631049 rs1288331 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2984.000000,2024.000000,2024.000000,2984.000000, 0.297923,0.202077,0.202077,0.297923, maf-5-some-pop,maf-5-all-pops,microattr-tpa 994 chr1 53631231 53631232 rs11806748 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 994 chr1 53632423 53632424 rs2046140 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1166.000000,3842.000000,3842.000000,1166.000000, 0.116414,0.383586,0.383586,0.116414, maf-5-some-pop 994 chr1 53633247 53633248 rs1298238 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2989.000000,2019.000000,2019.000000,2989.000000, 0.298423,0.201577,0.201577,0.298423, maf-5-some-pop,maf-5-all-pops 994 chr1 53636176 53636177 rs4543741 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53637105 53637106 rs3125253 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 994 chr1 53641910 53641911 rs7531337 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53642448 53642449 rs3102047 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1682.000000,3326.000000, 0.335863,0.664137, maf-5-some-pop,maf-5-all-pops 994 chr1 53643198 53643199 rs6704459 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53643489 53643490 rs11206122 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4241.000000,767.000000, 0.846845,0.153155, maf-5-some-pop 994 chr1 53644966 53644967 rs6588471 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3817.000000,1191.000000, 0.762181,0.237819, maf-5-some-pop,genotype-conflict 994 chr1 53646539 53646540 rs3102045 0 - T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 994 chr1 53654541 53654542 rs3014991 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 A,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 994 chr1 53676447 53676448 rs1799821 0 + G G A/G genomic single unknown 0 0 missense exact 1 33 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HASEEB_LAB,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WIAF-CSNP,YUSUKE, 2 A,G, 2069.000000,2939.000000, 0.413139,0.586861, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53678553 53678554 rs737464 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2915.000000,2093.000000,2093.000000,2915.000000, 0.291034,0.208966,0.208966,0.291034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 994 chr1 53679052 53679053 rs1871748 0 + C C C/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,ABI,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TSC-CSHL, 2 C,G, 5000.000000,8.000000, 0.998403,0.001597, 994 chr1 53680089 53680090 rs1056425 0 - G G C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1120.000000,3888.000000,3888.000000,1120.000000, 0.111821,0.388179,0.388179,0.111821, maf-5-some-pop 994 chr1 53696050 53696051 rs10788949 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3841.000000,1167.000000, 0.766973,0.233027, maf-5-some-pop,maf-5-all-pops 994 chr1 53699128 53699129 rs17192655 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP, 2 C,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 994 chr1 53701580 53701581 rs2297656 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 994 chr1 53707952 53707953 rs17785382 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3682.000000,1326.000000, 0.735224,0.264776, maf-5-some-pop,maf-5-all-pops,microattr-tpa 994 chr1 53711734 53711735 rs5177 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,ABI,AFFY,ARAVINDA,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,microattr-tpa,genotype-conflict 994 chr1 53713335 53713336 rs10788950 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop 994 chr1 53713548 53713549 rs11206127 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1874.000000,3134.000000, 0.374201,0.625799, maf-5-some-pop,maf-5-all-pops,microattr-tpa 994 chr1 53723189 53723190 rs869987 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3077.000000,1931.000000, 0.614417,0.385583, maf-5-some-pop,maf-5-all-pops,microattr-tpa 994 chr1 53723348 53723349 rs869988 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1888.000000,3120.000000, 0.376997,0.623003, maf-5-some-pop,maf-5-all-pops 994 chr1 53723494 53723495 rs915191 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4128.000000,880.000000,880.000000,4128.000000, 0.412141,0.087859,0.087859,0.412141, maf-5-some-pop,genotype-conflict 994 chr1 53732137 53732138 rs17108177 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop 994 chr1 53732314 53732315 rs2297660 0 - G G A/C genomic single unknown 0 0 coding-synon exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1679.000000,3329.000000,3329.000000,1679.000000, 0.167632,0.332368,0.332368,0.167632, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,genotype-conflict 995 chr1 53746594 53746595 rs2297657 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 995 chr1 53751609 53751610 rs4623641 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3642.000000,1366.000000, 0.727236,0.272764, maf-5-some-pop,genotype-conflict 995 chr1 53756741 53756742 rs1288504 0 - A A A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 995 chr1 53757153 53757154 rs1288502 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3134.000000,1874.000000,1874.000000,3134.000000, 0.312899,0.187101,0.187101,0.312899, maf-5-some-pop,maf-5-all-pops 995 chr1 53757934 53757935 rs1288499 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 354.000000,4654.000000,4654.000000,354.000000, 0.035343,0.464657,0.464657,0.035343, maf-5-some-pop,microattr-tpa,genotype-conflict 995 chr1 53762780 53762781 rs11206139 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2833.000000,2175.000000, 0.565695,0.434305, maf-5-some-pop,genotype-conflict 995 chr1 53765418 53765419 rs2782499 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2559.000000,2449.000000,2449.000000,2559.000000, 0.255491,0.244509,0.244509,0.255491, maf-5-some-pop,maf-5-all-pops 995 chr1 53771201 53771202 rs10493173 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4506.000000,502.000000, 0.899760,0.100240, maf-5-some-pop 995 chr1 53771860 53771861 rs1288491 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2231.000000,2777.000000,2777.000000,2231.000000, 0.222744,0.277256,0.277256,0.222744, maf-5-some-pop,maf-5-all-pops 995 chr1 53772494 53772495 rs1288490 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 349.000000,4659.000000,4659.000000,349.000000, 0.034844,0.465156,0.465156,0.034844, maf-5-some-pop 995 chr1 53772543 53772544 rs1288489 0 - C C C/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 3 C,G,N, 1487.000000,1290.000000,1.000000, 0.535277,0.464363,0.000360, maf-5-some-pop,genotype-conflict 995 chr1 53775068 53775069 rs11808280 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 28.000000,4980.000000, 0.005591,0.994409, 995 chr1 53775224 53775225 rs11809943 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM, 2 C,T, 49.000000,4959.000000, 0.009784,0.990216, maf-5-some-pop 995 chr1 53777630 53777631 rs2788032 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4093.000000,915.000000,915.000000,4093.000000, 0.408646,0.091354,0.091354,0.408646, maf-5-some-pop,microattr-tpa 995 chr1 53779408 53779409 rs12084254 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,maf-5-all-pops 995 chr1 53779915 53779916 rs12063871 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 995 chr1 53782092 53782093 rs884586 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,C, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop 995 chr1 53786709 53786710 rs871452 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 995 chr1 53787297 53787298 rs872316 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 309.000000,4699.000000,4699.000000,309.000000, 0.030851,0.469149,0.469149,0.030851, maf-5-some-pop,genotype-conflict 995 chr1 53787482 53787483 rs872314 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4684.000000,324.000000,324.000000,4684.000000, 0.467652,0.032348,0.032348,0.467652, maf-5-some-pop 995 chr1 53787632 53787633 rs1288520 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2204.000000,2804.000000,2804.000000,2204.000000, 0.220048,0.279952,0.279952,0.220048, maf-5-some-pop,maf-5-all-pops 995 chr1 53788278 53788279 rs41360049 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 995 chr1 53788873 53788874 rs1288523 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2298.000000,2710.000000, 0.458866,0.541134, maf-5-some-pop,maf-5-all-pops,genotype-conflict 995 chr1 53796782 53796783 rs12354192 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 995 chr1 53796900 53796901 rs2225725 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop,genotype-conflict 995 chr1 53796920 53796921 rs1413874 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 995 chr1 53799297 53799298 rs11206144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop 995 chr1 53808357 53808358 rs2782495 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3248.000000,1760.000000, 0.648562,0.351438, maf-5-some-pop,maf-5-all-pops 995 chr1 53808657 53808658 rs1416096 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1805.000000,3203.000000,3203.000000,1805.000000, 0.180212,0.319788,0.319788,0.180212, maf-5-some-pop,maf-5-all-pops,genotype-conflict 995 chr1 53808692 53808693 rs1416095 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2294.000000,2714.000000,2714.000000,2294.000000, 0.229034,0.270966,0.270966,0.229034, maf-5-some-pop 995 chr1 53809029 53809030 rs2782497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1928.000000,3080.000000, 0.384984,0.615016, maf-5-some-pop,maf-5-all-pops 995 chr1 53809287 53809288 rs7516010 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 995 chr1 53811941 53811942 rs6698595 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2536.000000,2472.000000, 0.506390,0.493610, maf-5-some-pop,genotype-conflict 995 chr1 53812210 53812211 rs6675333 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,genotype-conflict 995 chr1 53819025 53819026 rs2027261 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3288.000000,1720.000000, 0.656550,0.343450, maf-5-some-pop,maf-5-all-pops 995 chr1 53821820 53821821 rs11206148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop 995 chr1 53827480 53827481 rs12143675 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 995 chr1 53829819 53829820 rs1999898 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4217.000000,791.000000, 0.842053,0.157947, maf-5-some-pop 995 chr1 53831094 53831095 rs11206152 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2148.000000,2860.000000, 0.428914,0.571086, maf-5-some-pop,maf-5-all-pops,genotype-conflict 995 chr1 53831210 53831211 rs1933535 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 1886.000000,3122.000000, 0.376597,0.623403, maf-5-some-pop,maf-5-all-pops 995 chr1 53832696 53832697 rs12041966 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops 995 chr1 53835095 53835096 rs4926984 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2070.000000,2938.000000, 0.413339,0.586661, maf-5-some-pop,maf-5-all-pops 995 chr1 53835124 53835125 rs4926985 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1600.000000,3408.000000, 0.319489,0.680511, maf-5-some-pop,maf-5-all-pops 995 chr1 53835298 53835299 rs6687108 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1390.000000,3618.000000, 0.277556,0.722444, maf-5-some-pop 995 chr1 53845439 53845440 rs2185077 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3628.000000,1380.000000, 0.724441,0.275559, maf-5-some-pop,maf-5-all-pops 995 chr1 53845984 53845985 rs17108398 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1143.000000,3865.000000, 0.228235,0.771765, maf-5-some-pop 995 chr1 53846252 53846253 rs17108402 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop 995 chr1 53846402 53846403 rs12027932 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,C, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 995 chr1 53851164 53851165 rs12240062 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop 995 chr1 53851853 53851854 rs17108427 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop 995 chr1 53852153 53852154 rs17108428 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop 995 chr1 53852448 53852449 rs6677153 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 2996.000000,2012.000000, 0.598243,0.401757, maf-5-some-pop 995 chr1 53857443 53857444 rs6660818 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop,genotype-conflict 995 chr1 53860357 53860358 rs41447650 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4713.000000,295.000000,295.000000,4713.000000, 0.470547,0.029453,0.029453,0.470547, maf-5-some-pop,maf-5-all-pops 995 chr1 53862593 53862594 rs1288582 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3569.000000,1439.000000,1439.000000,3569.000000, 0.356330,0.143670,0.143670,0.356330, maf-5-some-pop 995 chr1 53864018 53864019 rs17371030 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 588.000000,4420.000000, 0.117412,0.882588, maf-5-some-pop 995 chr1 53868470 53868471 rs1288591 0 - C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 995 chr1 53870465 53870466 rs4926992 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1791.000000,3217.000000, 0.357628,0.642372, maf-5-some-pop,maf-5-all-pops 996 chr1 53873554 53873555 rs1288587 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1452.000000,3556.000000,3556.000000,1452.000000, 0.144968,0.355032,0.355032,0.144968, maf-5-some-pop,genotype-conflict 996 chr1 53876148 53876149 rs1342970 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3531.000000,1477.000000, 0.705072,0.294928, maf-5-some-pop,maf-5-all-pops 996 chr1 53876380 53876381 rs953625 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1498.000000,3510.000000,3510.000000,1498.000000, 0.149561,0.350439,0.350439,0.149561, maf-5-some-pop 996 chr1 53877198 53877199 rs11206154 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3783.000000,1225.000000, 0.755391,0.244609, maf-5-some-pop,maf-5-all-pops 996 chr1 53877479 53877480 rs17379805 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop 996 chr1 53878778 53878779 rs6681936 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3630.000000,1378.000000, 0.724840,0.275160, maf-5-some-pop,maf-5-all-pops 996 chr1 53879926 53879927 rs17108507 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 3904.000000,1104.000000, 0.779553,0.220447, maf-5-some-pop 996 chr1 53880355 53880356 rs17108515 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 996 chr1 53880368 53880369 rs6685296 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop,genotype-conflict 996 chr1 53881080 53881081 rs6686055 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3346.000000,1662.000000, 0.668131,0.331869, maf-5-some-pop,maf-5-all-pops 996 chr1 53881253 53881254 rs6683597 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1775.000000,3233.000000, 0.354433,0.645567, maf-5-some-pop,maf-5-all-pops 996 chr1 53881607 53881608 rs6697300 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop 996 chr1 53889008 53889009 rs6698186 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop 996 chr1 53897516 53897517 rs12033075 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1712.000000,3296.000000, 0.341853,0.658147, maf-5-some-pop,maf-5-all-pops 996 chr1 53900841 53900842 rs1766642 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop 996 chr1 53900966 53900967 rs6678150 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1325.000000,3683.000000, 0.264577,0.735423, maf-5-some-pop,maf-5-all-pops 996 chr1 53901341 53901342 rs6672280 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop 996 chr1 53909019 53909020 rs7512516 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 996 chr1 53911811 53911812 rs11206160 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2464.000000,2544.000000, 0.492013,0.507987, maf-5-some-pop,maf-5-all-pops 996 chr1 53916575 53916576 rs12046664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 996 chr1 53917442 53917443 rs41366756 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 3 1000GENOMES,AFFY,AFFY_GWHS, 4 A,C,G,T, 154.000000,4854.000000,4854.000000,154.000000, 0.015375,0.484625,0.484625,0.015375, maf-5-some-pop 996 chr1 53918871 53918872 rs41421650 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 996 chr1 53921570 53921571 rs41443646 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,AFFY_GWHS,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1475.000000,3533.000000, 0.294529,0.705471, maf-5-some-pop,maf-5-all-pops 996 chr1 53922154 53922155 rs7543581 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3220.000000,1788.000000, 0.642971,0.357029, maf-5-some-pop,maf-5-all-pops,genotype-conflict 996 chr1 53929462 53929463 rs1108989 0 - T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 996 chr1 53929535 53929536 rs1288632 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops 996 chr1 53934090 53934091 rs1288637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2660.000000,2348.000000, 0.531150,0.468850, maf-5-some-pop,maf-5-all-pops 996 chr1 53936382 53936383 rs11579521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops,genotype-conflict 996 chr1 53936717 53936718 rs11579575 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,genotype-conflict 996 chr1 53940254 53940255 rs1288642 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 996 chr1 53942582 53942583 rs11581093 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop,maf-5-all-pops 996 chr1 53944429 53944430 rs11206162 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1525.000000,3483.000000, 0.304513,0.695487, maf-5-some-pop,maf-5-all-pops 996 chr1 53946484 53946485 rs1288622 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4016.000000,992.000000,992.000000,4016.000000, 0.400958,0.099042,0.099042,0.400958, maf-5-some-pop,genotype-conflict 996 chr1 53946717 53946718 rs12027731 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 917.000000,4091.000000, 0.183107,0.816893, maf-5-some-pop 996 chr1 53947867 53947868 rs17108559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,genotype-conflict 996 chr1 53963480 53963481 rs10749690 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2925.000000,2083.000000, 0.584065,0.415935, maf-5-some-pop,maf-5-all-pops 996 chr1 53965175 53965176 rs943520 0 - A A G/T genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 24 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 511.000000,4497.000000,4497.000000,511.000000, 0.051018,0.448982,0.448982,0.051018, maf-5-some-pop,genotype-conflict 996 chr1 53969725 53969726 rs17108634 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 996 chr1 53986682 53986683 rs2316191 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3937.000000,1071.000000,1071.000000,3937.000000, 0.393071,0.106929,0.106929,0.393071, maf-5-some-pop 996 chr1 53986999 53987000 rs545467 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4746.000000,262.000000,262.000000,4746.000000, 0.473842,0.026158,0.026158,0.473842, maf-5-some-pop,genotype-conflict 996 chr1 53988805 53988806 rs2478979 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 773.000000,4235.000000,4235.000000,773.000000, 0.077177,0.422823,0.422823,0.077177, maf-5-some-pop 996 chr1 54000725 54000726 rs7520584 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1383.000000,3625.000000, 0.276158,0.723842, maf-5-some-pop,maf-5-all-pops,genotype-conflict 997 chr1 54003206 54003207 rs12738941 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1178.000000,3830.000000, 0.235224,0.764776, maf-5-some-pop 997 chr1 54004077 54004078 rs17108691 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop 997 chr1 54005059 54005060 rs11206169 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 997 chr1 54005422 54005423 rs12731693 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2073.000000,2935.000000, 0.413938,0.586062, maf-5-some-pop,maf-5-all-pops 997 chr1 54009232 54009233 rs3889128 0 - G G C/G genomic single unknown 0 0 intron exact 1 DuplicateObserved 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 997 chr1 54009278 54009279 rs496933 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1247.000000,3761.000000, 0.249002,0.750998, maf-5-some-pop 997 chr1 54009375 54009376 rs9700109 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 997 chr1 54009582 54009583 rs41363049 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 895.000000,4113.000000,4113.000000,895.000000, 0.089357,0.410643,0.410643,0.089357, maf-5-some-pop 997 chr1 54010825 54010826 rs17108709 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop 997 chr1 54010925 54010926 rs11206170 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2533.000000,2475.000000, 0.505791,0.494209, maf-5-some-pop,maf-5-all-pops 997 chr1 54011141 54011142 rs6682171 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1362.000000,3646.000000,3646.000000,1362.000000, 0.135982,0.364018,0.364018,0.135982, maf-5-some-pop,maf-5-all-pops,genotype-conflict 997 chr1 54011502 54011503 rs41488848 0 - G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 997 chr1 54013074 54013075 rs2316192 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2355.000000,2653.000000, 0.470248,0.529752, maf-5-some-pop,maf-5-all-pops 997 chr1 54014412 54014413 rs17108762 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,genotype-conflict 997 chr1 54014491 54014492 rs563403 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 207.000000,4801.000000,4801.000000,207.000000, 0.020667,0.479333,0.479333,0.020667, maf-5-some-pop,genotype-conflict 997 chr1 54016352 54016353 rs17108782 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop 997 chr1 54018482 54018483 rs11206172 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1419.000000,3589.000000, 0.283347,0.716653, maf-5-some-pop,maf-5-all-pops 997 chr1 54019130 54019131 rs503166 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop 997 chr1 54019472 54019473 rs489050 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop 997 chr1 54019667 54019668 rs490868 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop 997 chr1 54020541 54020542 rs12141264 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4603.000000,405.000000, 0.919129,0.080871, maf-5-some-pop 997 chr1 54024807 54024808 rs4575030 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2217.000000,2791.000000, 0.442692,0.557308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 997 chr1 54026243 54026244 rs6668873 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop 997 chr1 54027567 54027568 rs17108812 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, maf-5-some-pop,maf-5-all-pops,genotype-conflict 997 chr1 54027908 54027909 rs552789 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 C,T, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 997 chr1 54028430 54028431 rs494082 0 - G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 997 chr1 54029641 54029642 rs4927007 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3058.000000,1950.000000, 0.610623,0.389377, maf-5-some-pop 997 chr1 54029855 54029856 rs2873096 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1229.000000,3779.000000,3779.000000,1229.000000, 0.122704,0.377296,0.377296,0.122704, maf-5-some-pop,maf-5-all-pops 997 chr1 54029892 54029893 rs12076641 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 427.000000,4581.000000, 0.085264,0.914736, maf-5-some-pop,genotype-conflict 997 chr1 54030131 54030132 rs1465034 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3705.000000,1303.000000,1303.000000,3705.000000, 0.369908,0.130092,0.130092,0.369908, maf-5-some-pop,maf-5-all-pops 997 chr1 54032697 54032698 rs2091407 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 391.000000,4617.000000, 0.078075,0.921925, maf-5-some-pop 997 chr1 54034868 54034869 rs1949943 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2214.000000,2794.000000, 0.442093,0.557907, maf-5-some-pop,maf-5-all-pops 997 chr1 54038000 54038001 rs1983485 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 971.000000,4037.000000,4037.000000,971.000000, 0.096945,0.403055,0.403055,0.096945, maf-5-some-pop 997 chr1 54038522 54038523 rs11206174 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2793.000000,2215.000000, 0.557708,0.442292, maf-5-some-pop,maf-5-all-pops 997 chr1 54038535 54038536 rs10493174 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 558.000000,4450.000000, 0.111422,0.888578, maf-5-some-pop,microattr-tpa 997 chr1 54042335 54042336 rs2950249 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 675.000000,4333.000000, 0.134784,0.865216, maf-5-some-pop 997 chr1 54042649 54042650 rs9651200 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 997 chr1 54043109 54043110 rs4634849 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2856.000000,2152.000000, 0.570288,0.429712, maf-5-some-pop 997 chr1 54043389 54043390 rs17108833 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 997 chr1 54045179 54045180 rs12089978 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1085.000000,3923.000000, 0.216653,0.783347, maf-5-some-pop 997 chr1 54045547 54045548 rs3006879 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4968.000000,40.000000, 0.992013,0.007987, 997 chr1 54045623 54045624 rs17386087 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop 997 chr1 54045717 54045718 rs17386108 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop,genotype-conflict 997 chr1 54047146 54047147 rs3006883 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop 997 chr1 54049234 54049235 rs2948046 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 106.000000,4902.000000,4902.000000,106.000000, 0.010583,0.489417,0.489417,0.010583, maf-5-some-pop 997 chr1 54051897 54051898 rs2948045 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3004.000000,2004.000000,2004.000000,3004.000000, 0.299920,0.200080,0.200080,0.299920, maf-5-some-pop,maf-5-all-pops 997 chr1 54061332 54061333 rs7551844 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2322.000000,2686.000000, 0.463658,0.536342, maf-5-some-pop,maf-5-all-pops 997 chr1 54061445 54061446 rs10888795 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1202.000000,3806.000000, 0.240016,0.759984, maf-5-some-pop 997 chr1 54061977 54061978 rs3013754 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2689.000000,2319.000000,2319.000000,2689.000000, 0.268470,0.231530,0.231530,0.268470, maf-5-some-pop,maf-5-all-pops 997 chr1 54062272 54062273 rs2948053 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2688.000000,2320.000000, 0.536741,0.463259, maf-5-some-pop,maf-5-all-pops 997 chr1 54064468 54064469 rs1320385 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1486.000000,3522.000000,3522.000000,1486.000000, 0.148363,0.351637,0.351637,0.148363, maf-5-some-pop 997 chr1 54065522 54065523 rs12120383 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3513.000000,1495.000000, 0.701478,0.298522, maf-5-some-pop 997 chr1 54066317 54066318 rs12036675 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1494.000000,3514.000000, 0.298323,0.701677, maf-5-some-pop 997 chr1 54066598 54066599 rs17382220 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 997 chr1 54070830 54070831 rs12062528 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop 997 chr1 54071427 54071428 rs17382457 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1226.000000,3782.000000, 0.244808,0.755192, maf-5-some-pop 997 chr1 54071609 54071610 rs12563871 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 997 chr1 54072758 54072759 rs3013749 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 997 chr1 54074802 54074803 rs3013747 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1453.000000,3555.000000,3555.000000,1453.000000, 0.145068,0.354932,0.354932,0.145068, maf-5-some-pop,maf-5-all-pops 997 chr1 54076356 54076357 rs3006894 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop,maf-5-all-pops 997 chr1 54077881 54077882 rs2950259 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop 997 chr1 54079807 54079808 rs2948055 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop,genotype-conflict 997 chr1 54079963 54079964 rs11801290 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2608.000000,2400.000000, 0.520767,0.479233, maf-5-some-pop,maf-5-all-pops,genotype-conflict 997 chr1 54080243 54080244 rs4927016 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4370.000000,638.000000, 0.872604,0.127396, maf-5-some-pop 997 chr1 54080346 54080347 rs4927017 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,maf-5-all-pops 997 chr1 54083212 54083213 rs3006897 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3622.000000,1386.000000, 0.723243,0.276757, maf-5-some-pop,maf-5-all-pops,genotype-conflict 997 chr1 54086200 54086201 rs3006900 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop,genotype-conflict 997 chr1 54093505 54093506 rs4927020 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1226.000000,3782.000000, 0.244808,0.755192, maf-5-some-pop,maf-5-all-pops 997 chr1 54094379 54094380 rs11206182 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 997 chr1 54096590 54096591 rs4926607 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4376.000000,632.000000, 0.873802,0.126198, maf-5-some-pop 997 chr1 54099803 54099804 rs3006903 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2905.000000,2103.000000, 0.580072,0.419928, maf-5-some-pop,maf-5-all-pops 997 chr1 54102942 54102943 rs17382914 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop 997 chr1 54103374 54103375 rs12045240 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2877.000000,2131.000000, 0.574481,0.425519, maf-5-some-pop,genotype-conflict 997 chr1 54105363 54105364 rs941123 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 997 chr1 54105635 54105636 rs7520808 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3538.000000,1470.000000, 0.706470,0.293530, maf-5-some-pop,maf-5-all-pops 997 chr1 54108211 54108212 rs11206185 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop,genotype-conflict 997 chr1 54108905 54108906 rs10888802 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3282.000000,1726.000000, 0.655351,0.344649, maf-5-some-pop,maf-5-all-pops 997 chr1 54117984 54117985 rs11206186 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop 997 chr1 54118848 54118849 rs7522391 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 549.000000,4459.000000, 0.109625,0.890375, maf-5-some-pop,genotype-conflict 997 chr1 54119912 54119913 rs1465035 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2832.000000,2176.000000, 0.565495,0.434505, maf-5-some-pop,maf-5-all-pops 997 chr1 54120306 54120307 rs12733756 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 2002.000000,3006.000000, 0.399760,0.600240, maf-5-some-pop,genotype-conflict 997 chr1 54120837 54120838 rs11590616 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 725.000000,4283.000000, 0.144768,0.855232, maf-5-some-pop 997 chr1 54120872 54120873 rs2141079 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 2999.000000,2009.000000, 0.598842,0.401158, maf-5-some-pop,genotype-conflict 997 chr1 54123512 54123513 rs1111658 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop,maf-5-all-pops 997 chr1 54123872 54123873 rs941125 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3040.000000,1968.000000, 0.607029,0.392971, maf-5-some-pop,maf-5-all-pops 997 chr1 54127968 54127969 rs11206187 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,maf-5-all-pops 997 chr1 54129381 54129382 rs17109072 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 A,T, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 997 chr1 54129590 54129591 rs2950241 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3101.000000,1907.000000, 0.619209,0.380791, maf-5-some-pop,maf-5-all-pops 997 chr1 54129704 54129705 rs17109076 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 997 chr1 54129731 54129732 rs12405835 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3951.000000,1057.000000, 0.788938,0.211062, maf-5-some-pop,maf-5-all-pops 998 chr1 54133293 54133294 rs2950242 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026558, maf-5-some-pop,genotype-conflict 998 chr1 54135650 54135651 rs2950243 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop 998 chr1 54136056 54136057 rs12564271 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop 998 chr1 54140842 54140843 rs4927026 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop 998 chr1 54145050 54145051 rs12025849 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop 998 chr1 54152620 54152621 rs3013777 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2781.000000,2227.000000,2227.000000,2781.000000, 0.277656,0.222344,0.222344,0.277656, maf-5-some-pop,maf-5-all-pops,genotype-conflict 998 chr1 54155901 54155902 rs3013771 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3092.000000,1916.000000,1916.000000,3092.000000, 0.308706,0.191294,0.191294,0.308706, maf-5-some-pop,maf-5-all-pops 998 chr1 54156623 54156624 rs12082358 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3866.000000,1142.000000, 0.771965,0.228035, maf-5-some-pop,maf-5-all-pops 998 chr1 54158101 54158102 rs11206191 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1298.000000,3710.000000, 0.259185,0.740815, maf-5-some-pop,maf-5-all-pops 998 chr1 54158689 54158690 rs11206192 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop,maf-5-all-pops 998 chr1 54158761 54158762 rs11206193 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3545.000000,1463.000000, 0.707867,0.292133, maf-5-some-pop,maf-5-all-pops 998 chr1 54171211 54171212 rs1173586 0 + C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop,genotype-conflict 998 chr1 54172943 54172944 rs1173589 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2223.000000,2785.000000, 0.443890,0.556110, maf-5-some-pop,maf-5-all-pops,genotype-conflict 998 chr1 54177278 54177279 rs7539908 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop,maf-5-all-pops 998 chr1 54177707 54177708 rs1780391 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 998 chr1 54177890 54177891 rs11206205 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 612.000000,4396.000000, 0.122204,0.877796, maf-5-some-pop 998 chr1 54178199 54178200 rs17109215 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4711.000000,297.000000, 0.940695,0.059305, maf-5-some-pop 998 chr1 54178500 54178501 rs12080993 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3852.000000,1156.000000, 0.769169,0.230831, maf-5-some-pop,maf-5-all-pops 998 chr1 54185388 54185389 rs11206210 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4299.000000,709.000000, 0.858427,0.141573, maf-5-some-pop 998 chr1 54188095 54188096 rs11206211 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1325.000000,3683.000000, 0.264577,0.735423, maf-5-some-pop,maf-5-all-pops 998 chr1 54189667 54189668 rs12043385 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,genotype-conflict 998 chr1 54190044 54190045 rs7547962 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop,maf-5-all-pops,genotype-conflict 998 chr1 54190694 54190695 rs797906 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2244.000000,2764.000000, 0.448083,0.551917, maf-5-some-pop,maf-5-all-pops 998 chr1 54193921 54193922 rs11206212 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 998 chr1 54196928 54196929 rs808860 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2621.000000,2387.000000,2387.000000,2621.000000, 0.261681,0.238319,0.238319,0.261681, maf-5-some-pop,maf-5-all-pops,genotype-conflict 998 chr1 54197687 54197688 rs702489 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 879.000000,4129.000000,4129.000000,879.000000, 0.087760,0.412240,0.412240,0.087760, maf-5-some-pop,maf-5-all-pops 998 chr1 54198205 54198206 rs797910 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4608.000000,400.000000,400.000000,4608.000000, 0.460064,0.039936,0.039936,0.460064, maf-5-some-pop,genotype-conflict 998 chr1 54198317 54198318 rs797911 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4586.000000,422.000000, 0.915735,0.084265, maf-5-some-pop 998 chr1 54198561 54198562 rs797913 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4371.000000,637.000000, 0.872804,0.127196, maf-5-some-pop,genotype-conflict 998 chr1 54199483 54199484 rs12075528 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop 998 chr1 54203106 54203107 rs2982662 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4932.000000,76.000000,76.000000,4932.000000, 0.492412,0.007588,0.007588,0.492412, maf-5-some-pop 998 chr1 54208834 54208835 rs797896 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4203.000000,805.000000, 0.839257,0.160743, maf-5-some-pop,genotype-conflict 998 chr1 54216653 54216654 rs761490 0 - C C C/G genomic single unknown 0 0 unknown exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 998 chr1 54217645 54217646 rs6588489 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,genotype-conflict 998 chr1 54222570 54222571 rs1183394 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 589.000000,4419.000000,4419.000000,589.000000, 0.058806,0.441194,0.441194,0.058806, maf-5-some-pop,genotype-conflict 998 chr1 54222731 54222732 rs9436929 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 998 chr1 54223476 54223477 rs7512127 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop 998 chr1 54230712 54230713 rs1181205 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TSC-CSHL, 4 A,C,G,T, 4920.000000,88.000000,88.000000,4920.000000, 0.491214,0.008786,0.008786,0.491214, maf-5-some-pop 998 chr1 54234579 54234580 rs17536223 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop 998 chr1 54247270 54247271 rs1569783 0 - C C C/G genomic single unknown 0 0 intron exact 1 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 998 chr1 54252197 54252198 rs1181183 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3940.000000,1068.000000,1068.000000,3940.000000, 0.393371,0.106629,0.106629,0.393371, maf-5-some-pop,maf-5-all-pops 998 chr1 54257375 54257376 rs17109377 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1212.000000,3796.000000, 0.242013,0.757987, maf-5-some-pop,maf-5-all-pops 998 chr1 54262162 54262163 rs9436477 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,maf-5-all-pops 999 chr1 54266677 54266678 rs1181177 0 - C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 999 chr1 54276224 54276225 rs1181156 0 - A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 999 chr1 54289214 54289215 rs1181189 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4438.000000,570.000000,570.000000,4438.000000, 0.443091,0.056909,0.056909,0.443091, maf-5-some-pop,genotype-conflict 999 chr1 54290618 54290619 rs12564079 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 999 chr1 54292025 54292026 rs1181186 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 646.000000,4362.000000,4362.000000,646.000000, 0.064497,0.435503,0.435503,0.064497, maf-5-some-pop 999 chr1 54292600 54292601 rs1181185 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 3924.000000,1084.000000,1084.000000,3924.000000, 0.391773,0.108227,0.108227,0.391773, maf-5-some-pop,maf-5-all-pops,genotype-conflict 999 chr1 54315631 54315632 rs12070315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 999 chr1 54317484 54317485 rs1127931 0 - G G C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP, 4 A,C,G,T, 185.000000,4823.000000,4823.000000,185.000000, 0.018470,0.481530,0.481530,0.018470, maf-5-some-pop 999 chr1 54323367 54323368 rs11206227 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,genotype-conflict 999 chr1 54323890 54323891 rs12022704 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop 999 chr1 54325687 54325688 rs11206230 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP, 2 C,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop 999 chr1 54326489 54326490 rs1181097 0 + T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF, 2 A,T, 2330.000000,2678.000000, 0.465256,0.534744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 999 chr1 54327982 54327983 rs12744108 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop 999 chr1 54328024 54328025 rs6588492 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3473.000000,1535.000000, 0.693490,0.306510, maf-5-some-pop,maf-5-all-pops 999 chr1 54328357 54328358 rs6681067 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop 999 chr1 54328813 54328814 rs6681549 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2157.000000,2851.000000, 0.430711,0.569289, maf-5-some-pop,maf-5-all-pops 999 chr1 54328987 54328988 rs6588493 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2155.000000,2853.000000, 0.430312,0.569688, maf-5-some-pop,maf-5-all-pops 999 chr1 54340671 54340672 rs10888813 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2363.000000,2645.000000, 0.471845,0.528155, maf-5-some-pop,maf-5-all-pops 999 chr1 54342836 54342837 rs11206232 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop,maf-5-all-pops 999 chr1 54343293 54343294 rs7541049 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2470.000000,2538.000000, 0.493211,0.506789, maf-5-some-pop 999 chr1 54343461 54343462 rs7541170 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2470.000000,2538.000000, 0.493211,0.506789, maf-5-some-pop,maf-5-all-pops 999 chr1 54345791 54345792 rs6680026 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1539.000000,3469.000000, 0.307308,0.692692, maf-5-some-pop,maf-5-all-pops 999 chr1 54356360 54356361 rs11206237 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop,genotype-conflict 999 chr1 54364808 54364809 rs6588496 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,maf-5-all-pops 999 chr1 54365300 54365301 rs12048683 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 999 chr1 54365678 54365679 rs10888818 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1279.000000,3729.000000, 0.255391,0.744609, maf-5-some-pop,maf-5-all-pops 999 chr1 54366363 54366364 rs12131461 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 999 chr1 54368252 54368253 rs731828 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2833.000000,2175.000000, 0.565695,0.434305, maf-5-some-pop,maf-5-all-pops 999 chr1 54370263 54370264 rs2294511 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop 999 chr1 54370305 54370306 rs2294512 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2086.000000,2922.000000, 0.416534,0.583466, maf-5-some-pop,maf-5-all-pops 999 chr1 54372123 54372124 rs12084242 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,T, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop 999 chr1 54375569 54375570 rs2235544 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 2305.000000,2703.000000, 0.460264,0.539736, maf-5-some-pop,maf-5-all-pops,microattr-tpa 999 chr1 54375700 54375701 rs11206244 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop,maf-5-all-pops 999 chr1 54376729 54376730 rs12095080 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop,maf-5-all-pops 999 chr1 54381405 54381406 rs12063777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3918.000000,1090.000000, 0.782348,0.217652, maf-5-some-pop,genotype-conflict 999 chr1 54382382 54382383 rs12065313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop 999 chr1 54386270 54386271 rs6696913 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop 999 chr1 54392301 54392302 rs12072178 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3864.000000,1144.000000, 0.771565,0.228435, maf-5-some-pop 999 chr1 54393003 54393004 rs12063019 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop,maf-5-all-pops 1000 chr1 54397239 54397240 rs11206252 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 417.000000,4591.000000, 0.083267,0.916733, maf-5-some-pop 1000 chr1 54422900 54422901 rs12092723 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop,genotype-conflict 1000 chr1 54432018 54432019 rs2294514 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1301.000000,3707.000000, 0.259784,0.740216, maf-5-some-pop 1000 chr1 54450900 54450901 rs7515322 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4216.000000,792.000000, 0.841853,0.158147, maf-5-some-pop 1000 chr1 54451079 54451080 rs7525809 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 792.000000,4216.000000, 0.158147,0.841853, maf-5-some-pop 1000 chr1 54458541 54458542 rs12048322 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 1000 chr1 54461702 54461703 rs637590 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1968.000000,3040.000000, 0.392971,0.607029, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1000 chr1 54472066 54472067 rs17109648 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,genotype-conflict 1000 chr1 54473515 54473516 rs928443 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3070.000000,1938.000000, 0.613019,0.386981, maf-5-some-pop,maf-5-all-pops 1000 chr1 54473547 54473548 rs928444 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3070.000000,1938.000000, 0.613019,0.386981, maf-5-some-pop,maf-5-all-pops 1000 chr1 54476146 54476147 rs17109656 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 801.000000,4207.000000, 0.159944,0.840056, maf-5-some-pop 1000 chr1 54476966 54476967 rs41366847 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop,maf-5-all-pops 1000 chr1 54480397 54480398 rs10158824 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops 1000 chr1 54482522 54482523 rs1537323 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1000 chr1 54485584 54485585 rs1999490 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,ABI,AFFY,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,genotype-conflict 1000 chr1 54489793 54489794 rs12240259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop 1000 chr1 54495253 54495254 rs12085915 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 1000 chr1 54500486 54500487 rs7539402 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 1000 chr1 54505755 54505756 rs41331348 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 128.000000,4880.000000,4880.000000,128.000000, 0.012780,0.487220,0.487220,0.012780, maf-5-some-pop,maf-5-all-pops 1000 chr1 54511199 54511200 rs41538044 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop 1000 chr1 54512552 54512553 rs41528748 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4815.000000,193.000000,193.000000,4815.000000, 0.480731,0.019269,0.019269,0.480731, maf-5-some-pop 1000 chr1 54519106 54519107 rs2236512 0 + G G A/C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KYUGEN,TISHKOFF,YUSUKE, 3 A,C,G, 616.000000,596.000000,3796.000000, 0.123003,0.119010,0.757987, maf-5-some-pop 1000 chr1 54519157 54519158 rs11206279 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 1001 chr1 54532637 54532638 rs12403921 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 1001 chr1 54557262 54557263 rs12094252 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,C, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop 1001 chr1 54558100 54558101 rs4926619 0 + T T C/T genomic single unknown 0 0 intron exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2979.000000,2029.000000, 0.594848,0.405152, maf-5-some-pop 1001 chr1 54559082 54559083 rs12086873 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4301.000000,707.000000, 0.858826,0.141174, maf-5-some-pop 1001 chr1 54566189 54566190 rs6694292 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1450.000000,3558.000000, 0.289537,0.710463, maf-5-some-pop,genotype-conflict 1001 chr1 54566309 54566310 rs6694397 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1526.000000,3482.000000, 0.304712,0.695288, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1001 chr1 54576638 54576639 rs11206283 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2105.000000,2903.000000, 0.420327,0.579673, maf-5-some-pop 1001 chr1 54578099 54578100 rs9919295 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop,genotype-conflict 1001 chr1 54580011 54580012 rs1329780 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 1001 chr1 54581868 54581869 rs13373789 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3130.000000,1878.000000, 0.625000,0.375000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1001 chr1 54585414 54585415 rs12063422 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2056.000000,2952.000000, 0.410543,0.589457, maf-5-some-pop,maf-5-all-pops 1001 chr1 54587120 54587121 rs17109806 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop 1001 chr1 54588881 54588882 rs7528864 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1822.000000,3186.000000, 0.363818,0.636182, maf-5-some-pop,maf-5-all-pops 1001 chr1 54592907 54592908 rs6657542 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 1001 chr1 54593035 54593036 rs609198 0 + A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2448.000000,2560.000000, 0.488818,0.511182, maf-5-some-pop,genotype-conflict 1001 chr1 54593255 54593256 rs1572731 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,T, 3293.000000,1715.000000, 0.657548,0.342452, maf-5-some-pop,maf-5-all-pops 1001 chr1 54594262 54594263 rs6679049 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 705.000000,4303.000000, 0.140775,0.859225, maf-5-some-pop 1001 chr1 54598712 54598713 rs4483354 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 1001 chr1 54599125 54599126 rs41478947 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 104.000000,4904.000000,4904.000000,104.000000, 0.010383,0.489617,0.489617,0.010383, maf-5-some-pop 1001 chr1 54606521 54606522 rs12078646 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1164.000000,3844.000000, 0.232428,0.767572, maf-5-some-pop 1001 chr1 54606803 54606804 rs3766465 0 - C C A/G genomic single unknown 0 0 missense exact 1 InconsistentAlleles 31 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4127.000000,881.000000,881.000000,4127.000000, 0.412041,0.087959,0.087959,0.412041, maf-5-some-pop,maf-5-all-pops 1001 chr1 54607156 54607157 rs671539 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4389.000000,619.000000, 0.876398,0.123602, maf-5-some-pop 1001 chr1 54607179 54607180 rs3766461 0 - A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 1001 chr1 54614144 54614145 rs6696001 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3807.000000,1201.000000, 0.760184,0.239816, maf-5-some-pop 1001 chr1 54614408 54614409 rs581554 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3593.000000,1415.000000, 0.717452,0.282548, maf-5-some-pop,maf-5-all-pops 1001 chr1 54615565 54615566 rs11576359 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop 1001 chr1 54616537 54616538 rs6667290 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop,maf-5-all-pops 1001 chr1 54616752 54616753 rs1999175 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop,genotype-conflict 1001 chr1 54617255 54617256 rs9436480 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4509.000000,499.000000, 0.900359,0.099641, maf-5-some-pop,genotype-conflict 1001 chr1 54617715 54617716 rs632961 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 G,T, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,genotype-conflict 1001 chr1 54618434 54618435 rs7528345 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1772.000000,3236.000000, 0.353834,0.646166, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1001 chr1 54619336 54619337 rs657783 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 1001 chr1 54625291 54625292 rs660514 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1001 chr1 54633542 54633543 rs17109968 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4405.000000,603.000000, 0.879593,0.120407, maf-5-some-pop,genotype-conflict 1001 chr1 54633629 54633630 rs17109974 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 1001 chr1 54637166 54637167 rs625643 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3454.000000,1554.000000, 0.689696,0.310304, maf-5-some-pop,maf-5-all-pops 1001 chr1 54645261 54645262 rs7520966 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3106.000000,1902.000000, 0.620208,0.379792, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa,genotype-conflict 1001 chr1 54645312 54645313 rs7528869 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3106.000000,1902.000000, 0.620208,0.379792, maf-5-some-pop,maf-5-all-pops 1002 chr1 54663156 54663157 rs12038480 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4474.000000,534.000000, 0.893371,0.106629, maf-5-some-pop 1002 chr1 54665123 54665124 rs946447 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 29 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop 1002 chr1 54668277 54668278 rs1890566 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3575.000000,1433.000000, 0.713858,0.286142, maf-5-some-pop,maf-5-all-pops,microattr-tpa 1002 chr1 54668561 54668562 rs17110087 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,genotype-conflict 1002 chr1 54669049 54669050 rs11804121 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4261.000000,747.000000, 0.850839,0.149161, maf-5-some-pop,genotype-conflict 1002 chr1 54677785 54677786 rs17392549 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EGP_SNPS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 1002 chr1 54677861 54677862 rs3766457 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 4460.000000,548.000000,548.000000,4460.000000, 0.445288,0.054712,0.054712,0.445288, maf-5-some-pop 1002 chr1 54679318 54679319 rs11206304 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3904.000000,1104.000000, 0.779553,0.220447, maf-5-some-pop,maf-5-all-pops 1002 chr1 54679911 54679912 rs4927071 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3112.000000,1896.000000, 0.621406,0.378594, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1002 chr1 54683412 54683413 rs10888840 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1002 chr1 54687064 54687065 rs10888841 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1243.000000,3765.000000, 0.248203,0.751797, maf-5-some-pop,maf-5-all-pops 1002 chr1 54689460 54689461 rs10888843 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2164.000000,2844.000000, 0.432109,0.567891, maf-5-some-pop,genotype-conflict 1002 chr1 54690953 54690954 rs3088379 0 - T T A/G genomic single unknown 0 0 intron,missense exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2695.000000,2313.000000,2313.000000,2695.000000, 0.269069,0.230931,0.230931,0.269069, maf-5-some-pop 1002 chr1 54696742 54696743 rs4061073 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3795.000000,1213.000000, 0.757788,0.242212, maf-5-some-pop,maf-5-all-pops,microattr-tpa 1002 chr1 54702868 54702869 rs3766453 0 - T T A/G genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3754.000000,1254.000000,1254.000000,3754.000000, 0.374800,0.125200,0.125200,0.374800, maf-5-some-pop 1002 chr1 54703701 54703702 rs946443 0 - C C G/T genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 578.000000,4430.000000,4430.000000,578.000000, 0.057708,0.442292,0.442292,0.057708, maf-5-some-pop,genotype-conflict 1002 chr1 54703767 54703768 rs3766448 0 - G G C/T genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 154.000000,4854.000000,4854.000000,154.000000, 0.015375,0.484625,0.484625,0.015375, maf-5-some-pop 1002 chr1 54714378 54714379 rs663436 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3296.000000,1712.000000, 0.658147,0.341853, maf-5-some-pop,maf-5-all-pops 1002 chr1 54714820 54714821 rs3753417 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 509.000000,4499.000000,4499.000000,509.000000, 0.050819,0.449181,0.449181,0.050819, maf-5-some-pop 1002 chr1 54716822 54716823 rs608386 0 - A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 1002 chr1 54719164 54719165 rs104136 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2959.000000,2049.000000, 0.590855,0.409145, maf-5-some-pop,maf-5-all-pops 1002 chr1 54721815 54721816 rs642198 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2196.000000,2812.000000, 0.438498,0.561502, maf-5-some-pop,maf-5-all-pops 1002 chr1 54725106 54725107 rs36120021 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1149.000000,3859.000000, 0.229433,0.770567, maf-5-some-pop,maf-5-all-pops 1002 chr1 54730650 54730651 rs3766430 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3072.000000,1936.000000,1936.000000,3072.000000, 0.306709,0.193291,0.193291,0.306709, maf-5-some-pop,maf-5-all-pops 1002 chr1 54734737 54734738 rs646534 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1895.000000,3113.000000,3113.000000,1895.000000, 0.189197,0.310803,0.310803,0.189197, maf-5-some-pop,maf-5-all-pops 1002 chr1 54735545 54735546 rs3766424 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1844.000000,3164.000000,3164.000000,1844.000000, 0.184105,0.315895,0.315895,0.184105, maf-5-some-pop,maf-5-all-pops 1002 chr1 54741766 54741767 rs603901 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3409.000000,1599.000000,1599.000000,3409.000000, 0.340355,0.159645,0.159645,0.340355, maf-5-some-pop,maf-5-all-pops 1002 chr1 54745466 54745467 rs17110221 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 1002 chr1 54745527 54745528 rs3753407 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4405.000000,603.000000,603.000000,4405.000000, 0.439796,0.060204,0.060204,0.439796, maf-5-some-pop 1002 chr1 54745566 54745567 rs3753406 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3475.000000,1533.000000,1533.000000,3475.000000, 0.346945,0.153055,0.153055,0.346945, maf-5-some-pop,maf-5-all-pops 1002 chr1 54745707 54745708 rs3753405 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 4922.000000,86.000000,86.000000,4922.000000, 0.491414,0.008586,0.008586,0.491414, maf-5-some-pop 1002 chr1 54750624 54750625 rs9326028 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop 1002 chr1 54751899 54751900 rs10788977 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1558.000000,3450.000000, 0.311102,0.688898, maf-5-some-pop 1002 chr1 54754847 54754848 rs623888 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 989.000000,4019.000000, 0.197484,0.802516, maf-5-some-pop,genotype-conflict 1002 chr1 54756079 54756080 rs17110262 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop 1002 chr1 54757400 54757401 rs10489809 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 1002 chr1 54757912 54757913 rs7512156 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 1002 chr1 54758300 54758301 rs12128840 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,G, 769.000000,4239.000000, 0.153554,0.846446, maf-5-some-pop 1002 chr1 54762265 54762266 rs17110296 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 1002 chr1 54762720 54762721 rs2183162 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3230.000000,1778.000000, 0.644968,0.355032, maf-5-some-pop,maf-5-all-pops 1002 chr1 54763763 54763764 rs17110311 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop 1002 chr1 54764240 54764241 rs17392743 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,PERLEGEN, 2 A,T, 4974.000000,34.000000, 0.993211,0.006789, maf-5-some-pop 1002 chr1 54765042 54765043 rs11206325 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop 1002 chr1 54765726 54765727 rs10888844 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1188.000000,3820.000000, 0.237220,0.762780, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1002 chr1 54766100 54766101 rs4927086 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1117.000000,3891.000000, 0.223043,0.776957, maf-5-some-pop 1002 chr1 54770423 54770424 rs12043517 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop 1002 chr1 54770440 54770441 rs7536329 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 1002 chr1 54770908 54770909 rs6695534 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 1480.000000,3528.000000, 0.295527,0.704473, maf-5-some-pop,maf-5-all-pops 1002 chr1 54775202 54775203 rs4927088 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3687.000000,1321.000000, 0.736222,0.263778, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1002 chr1 54777206 54777207 rs17110345 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1530.000000,3478.000000, 0.305511,0.694489, maf-5-some-pop 1002 chr1 54777561 54777562 rs11206329 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3356.000000,1652.000000, 0.670128,0.329872, maf-5-some-pop,maf-5-all-pops 1002 chr1 54787408 54787409 rs12120218 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2810.000000,2198.000000, 0.561102,0.438898, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54788927 54788928 rs4927089 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,genotype-conflict 1003 chr1 54789248 54789249 rs4926628 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4576.000000,432.000000, 0.913738,0.086262, maf-5-some-pop 1003 chr1 54790575 54790576 rs17110393 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop,maf-5-all-pops 1003 chr1 54792873 54792874 rs12404407 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 1003 chr1 54793682 54793683 rs12563481 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 1003 chr1 54794929 54794930 rs12564882 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,maf-5-all-pops 1003 chr1 54795658 54795659 rs17110430 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1567.000000,3441.000000, 0.312899,0.687101, maf-5-some-pop,maf-5-all-pops 1003 chr1 54795878 54795879 rs12404308 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1974.000000,3034.000000, 0.394169,0.605831, maf-5-some-pop,maf-5-all-pops 1003 chr1 54796147 54796148 rs12404565 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,genotype-conflict 1003 chr1 54804234 54804235 rs4926631 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop 1003 chr1 54808434 54808435 rs3901222 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop,genotype-conflict 1003 chr1 54810969 54810970 rs12092071 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3675.000000,1333.000000, 0.733826,0.266174, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54817053 54817054 rs17110456 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 1003 chr1 54818061 54818062 rs2073110 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 1003 chr1 54819976 54819977 rs4601533 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 4410.000000,598.000000, 0.880591,0.119409, maf-5-some-pop 1003 chr1 54820314 54820315 rs11206337 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1891.000000,3117.000000, 0.377596,0.622404, maf-5-some-pop,maf-5-all-pops 1003 chr1 54826086 54826087 rs17110479 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 1233.000000,3775.000000, 0.246206,0.753794, maf-5-some-pop,maf-5-all-pops 1003 chr1 54826186 54826187 rs10489565 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4317.000000,691.000000,691.000000,4317.000000, 0.431010,0.068990,0.068990,0.431010, maf-5-some-pop 1003 chr1 54826946 54826947 rs11206339 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop 1003 chr1 54827553 54827554 rs2073109 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1853.000000,3155.000000,3155.000000,1853.000000, 0.185004,0.314996,0.314996,0.185004, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54830555 54830556 rs12063509 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop 1003 chr1 54830568 54830569 rs2317387 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 4191.000000,817.000000, 0.836861,0.163139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54839068 54839069 rs2073108 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4274.000000,734.000000, 0.853435,0.146565, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54839532 54839533 rs6588512 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1749.000000,3259.000000, 0.349241,0.650759, maf-5-some-pop,maf-5-all-pops 1003 chr1 54840495 54840496 rs17101278 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54854078 54854079 rs6690450 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 3331.000000,1677.000000, 0.665136,0.334864, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54854983 54854984 rs213490 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3136.000000,1872.000000,1872.000000,3136.000000, 0.313099,0.186901,0.186901,0.313099, maf-5-some-pop,maf-5-all-pops 1003 chr1 54861188 54861189 rs3855976 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 127.000000,4881.000000,4881.000000,127.000000, 0.012680,0.487320,0.487320,0.012680, maf-5-some-pop 1003 chr1 54861539 54861540 rs213481 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3383.000000,1625.000000,1625.000000,3383.000000, 0.337760,0.162240,0.162240,0.337760, maf-5-some-pop,genotype-conflict 1003 chr1 54864007 54864008 rs213500 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2771.000000,2237.000000, 0.553315,0.446685, maf-5-some-pop,maf-5-all-pops 1003 chr1 54869815 54869816 rs213496 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2347.000000,2661.000000, 0.468650,0.531350, maf-5-some-pop,maf-5-all-pops 1003 chr1 54873108 54873109 rs7527646 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 1003 chr1 54882457 54882458 rs4927099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2071.000000,2937.000000, 0.413538,0.586462, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1003 chr1 54883162 54883163 rs4244644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2940.000000,2068.000000, 0.587061,0.412939, maf-5-some-pop,maf-5-all-pops 1003 chr1 54887296 54887297 rs4927104 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1295.000000,3713.000000, 0.258586,0.741414, maf-5-some-pop 1003 chr1 54888244 54888245 rs4927107 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2920.000000,2088.000000, 0.583067,0.416933, maf-5-some-pop,maf-5-all-pops 1003 chr1 54890955 54890956 rs1883783 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1458.000000,3550.000000,3550.000000,1458.000000, 0.145567,0.354433,0.354433,0.145567, maf-5-some-pop,maf-5-all-pops 1003 chr1 54901579 54901580 rs12047553 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3018.000000,1990.000000, 0.602636,0.397364, maf-5-some-pop,maf-5-all-pops 1003 chr1 54905581 54905582 rs11206355 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1726.000000,3282.000000, 0.344649,0.655351, maf-5-some-pop,maf-5-all-pops 1003 chr1 54905920 54905921 rs12734042 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop 1003 chr1 54907166 54907167 rs12563251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop,maf-5-all-pops 1003 chr1 54907934 54907935 rs1543369 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1990.000000,3018.000000,3018.000000,1990.000000, 0.198682,0.301318,0.301318,0.198682, maf-5-some-pop,maf-5-all-pops 1003 chr1 54918665 54918666 rs12746454 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3519.000000,1489.000000, 0.702676,0.297324, maf-5-some-pop 1004 chr1 54919458 54919459 rs10888853 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3253.000000,1755.000000, 0.649561,0.350439, maf-5-some-pop,maf-5-all-pops 1004 chr1 54928492 54928493 rs7550485 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 1004 chr1 54940164 54940165 rs11206367 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 765.000000,4243.000000, 0.152756,0.847244, maf-5-some-pop,genotype-conflict 1004 chr1 54943025 54943026 rs382327 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 1004 chr1 54945134 54945135 rs7548766 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop 1004 chr1 54953522 54953523 rs4927133 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop,maf-5-all-pops 1004 chr1 54959293 54959294 rs2873449 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4363.000000,645.000000, 0.871206,0.128794, maf-5-some-pop 1004 chr1 54960695 54960696 rs477198 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop 1004 chr1 54960988 54960989 rs904218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 576.000000,4432.000000, 0.115016,0.884984, maf-5-some-pop 1004 chr1 54961162 54961163 rs6697657 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop 1004 chr1 54961747 54961748 rs10888854 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop,genotype-conflict 1004 chr1 54962364 54962365 rs904219 0 + A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 3 A,G,T, 3531.000000,1471.000000,6.000000, 0.705072,0.293730,0.001198, maf-5-some-pop 1004 chr1 54962447 54962448 rs299895 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4304.000000,704.000000, 0.859425,0.140575, maf-5-some-pop 1004 chr1 54963957 54963958 rs11206370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,genotype-conflict 1004 chr1 54967889 54967890 rs1888182 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop,maf-5-all-pops 1004 chr1 54968493 54968494 rs299881 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2591.000000,2417.000000, 0.517372,0.482628, maf-5-some-pop,maf-5-all-pops 1004 chr1 54977326 54977327 rs2317683 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop,genotype-conflict 1004 chr1 54978947 54978948 rs7512248 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,genotype-conflict 1004 chr1 54982704 54982705 rs4927136 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 630.000000,4378.000000,4378.000000,630.000000, 0.062899,0.437101,0.437101,0.062899, maf-5-some-pop 1004 chr1 55009248 55009249 rs11206382 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop 1004 chr1 55012358 55012359 rs10888857 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop 1004 chr1 55021799 55021800 rs403594 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1839.000000,3169.000000,3169.000000,1839.000000, 0.183606,0.316394,0.316394,0.183606, maf-5-some-pop,maf-5-all-pops 1004 chr1 55022556 55022557 rs2133003 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3984.000000,1024.000000,1024.000000,3984.000000, 0.397764,0.102236,0.102236,0.397764, maf-5-some-pop,maf-5-all-pops 1004 chr1 55024861 55024862 rs12061713 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 1004 chr1 55030529 55030530 rs449484 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3291.000000,1717.000000, 0.657149,0.342851, maf-5-some-pop,maf-5-all-pops 1004 chr1 55031312 55031313 rs537696 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1004 chr1 55036883 55036884 rs41503150 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,ILLUMINA-UK, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 1004 chr1 55038980 55038981 rs3851855 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4681.000000,327.000000,327.000000,4681.000000, 0.467352,0.032648,0.032648,0.467352, maf-5-some-pop 1004 chr1 55039804 55039805 rs12060880 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop 1004 chr1 55040550 55040551 rs17110698 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop 1004 chr1 55041037 55041038 rs681057 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 1004 chr1 55042324 55042325 rs473806 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop 1004 chr1 55042677 55042678 rs477366 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,genotype-conflict 1004 chr1 55042756 55042757 rs478225 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop,genotype-conflict 1004 chr1 55043532 55043533 rs17110727 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop 1004 chr1 55045982 55045983 rs300272 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1900.000000,3108.000000,3108.000000,1900.000000, 0.189696,0.310304,0.310304,0.189696, maf-5-some-pop,maf-5-all-pops 1004 chr1 55046038 55046039 rs300271 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3713.000000,1295.000000,1295.000000,3713.000000, 0.370707,0.129293,0.129293,0.370707, maf-5-some-pop,maf-5-all-pops,microattr-tpa 1004 chr1 55046129 55046130 rs11811633 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop,genotype-conflict 1004 chr1 55046391 55046392 rs300269 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1433.000000,3575.000000,3575.000000,1433.000000, 0.143071,0.356929,0.356929,0.143071, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1004 chr1 55046534 55046535 rs300267 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2737.000000,2271.000000,2271.000000,2737.000000, 0.273263,0.226737,0.226737,0.273263, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1004 chr1 55046925 55046926 rs17110739 0 + C C A/C/G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 SingleClassQuadAllelic,InconsistentAlleles 6 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 C,G,T, 4824.000000,45.000000,139.000000, 0.963259,0.008986,0.027756, maf-5-some-pop,genotype-conflict 1004 chr1 55047723 55047724 rs7531575 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 743.000000,4265.000000, 0.148363,0.851637, maf-5-some-pop 1004 chr1 55047800 55047801 rs7521400 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop,genotype-conflict 1004 chr1 55048097 55048098 rs12563368 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop 1004 chr1 55048189 55048190 rs17110749 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop,genotype-conflict 1005 chr1 55050812 55050813 rs41351245 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,AFFY_GWHS,ILLUMINA-UK,TISHKOFF, 4 A,C,G,T, 4932.000000,76.000000,76.000000,4932.000000, 0.492412,0.007588,0.007588,0.492412, maf-5-some-pop,maf-5-all-pops 1005 chr1 55057662 55057663 rs12564436 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4305.000000,703.000000, 0.859625,0.140375, maf-5-some-pop 1005 chr1 55060547 55060548 rs1702002 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1202.000000,3806.000000,3806.000000,1202.000000, 0.120008,0.379992,0.379992,0.120008, maf-5-some-pop 1005 chr1 55061253 55061254 rs4927139 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 847.000000,4161.000000, 0.169129,0.830871, maf-5-some-pop 1005 chr1 55067991 55067992 rs732509 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 4414.000000,594.000000,594.000000,4414.000000, 0.440695,0.059305,0.059305,0.440695, maf-5-some-pop,genotype-conflict 1005 chr1 55075061 55075062 rs2289015 0 - C C A/G genomic single unknown 0 0 intron,missense,untranslated-3 exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 402.000000,4606.000000,4606.000000,402.000000, 0.040136,0.459864,0.459864,0.040136, maf-5-some-pop,genotype-conflict 1005 chr1 55085140 55085141 rs17395160 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop,genotype-conflict 1005 chr1 55103944 55103945 rs10736390 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2305.000000,2703.000000, 0.460264,0.539736, maf-5-some-pop,maf-5-all-pops 1005 chr1 55106932 55106933 rs11206403 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 1005 chr1 55107018 55107019 rs1368882 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1991.000000,3017.000000,3017.000000,1991.000000, 0.198782,0.301218,0.301218,0.198782, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 1005 chr1 55107054 55107055 rs957132 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 209.000000,4799.000000,4799.000000,209.000000, 0.020867,0.479133,0.479133,0.020867, maf-5-some-pop 1005 chr1 55108977 55108978 rs10888858 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3501.000000,1507.000000, 0.699081,0.300919, maf-5-some-pop,maf-5-all-pops 1005 chr1 55115116 55115117 rs17110873 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop 1005 chr1 55115500 55115501 rs1655523 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3575.000000,1433.000000,1433.000000,3575.000000, 0.356929,0.143071,0.143071,0.356929, maf-5-some-pop,maf-5-all-pops 1005 chr1 55115607 55115608 rs1701999 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3688.000000,1320.000000, 0.736422,0.263578, maf-5-some-pop 1005 chr1 55116999 55117000 rs752468 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 1005 chr1 55117519 55117520 rs10888859 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 567.000000,4441.000000, 0.113219,0.886781, maf-5-some-pop,genotype-conflict 1005 chr1 55118161 55118162 rs7533275 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3420.000000,1588.000000, 0.682907,0.317093, maf-5-some-pop,maf-5-all-pops 1005 chr1 55119143 55119144 rs11206407 0 + A A A/G genomic single unknown 0 0 ncRNA,missense exact 1 24 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,genotype-conflict 1005 chr1 55119288 55119289 rs9332417 0 + G G C/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,G, 2106.000000,2902.000000, 0.420527,0.579473, maf-5-some-pop,genotype-conflict 1005 chr1 55119514 55119515 rs1655519 0 - T T A/C genomic single unknown 0 0 ncRNA,missense exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2877.000000,2131.000000,2131.000000,2877.000000, 0.287240,0.212760,0.212760,0.287240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1005 chr1 55119533 55119534 rs17399810 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,genotype-conflict 1005 chr1 55123935 55123936 rs558184 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020966,0.979034, maf-5-some-pop,genotype-conflict 1005 chr1 55124387 55124388 rs473223 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop 1005 chr1 55125462 55125463 rs1702000 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop 1005 chr1 55129563 55129564 rs1529783 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4188.000000,820.000000,820.000000,4188.000000, 0.418131,0.081869,0.081869,0.418131, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1005 chr1 55129727 55129728 rs7530161 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 1005 chr1 55129741 55129742 rs689258 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1197.000000,3811.000000, 0.239018,0.760982, maf-5-some-pop 1005 chr1 55130945 55130946 rs6703113 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1934.000000,3074.000000, 0.386182,0.613818, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1005 chr1 55131896 55131897 rs658823 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 539.000000,4469.000000, 0.107628,0.892372, maf-5-some-pop,genotype-conflict 1005 chr1 55138293 55138294 rs598130 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1553.000000,3455.000000,3455.000000,1553.000000, 0.155052,0.344948,0.344948,0.155052, maf-5-some-pop,maf-5-all-pops 1005 chr1 55139617 55139618 rs571199 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1223.000000,3785.000000, 0.244209,0.755791, maf-5-some-pop,maf-5-all-pops,microattr-tpa 1005 chr1 55139740 55139741 rs570218 0 + A A A/G genomic single unknown 0 0 ncRNA,missense exact 1 31 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 452.000000,4556.000000, 0.090256,0.909744, maf-5-some-pop 1005 chr1 55143327 55143328 rs12137621 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1005 chr1 55144099 55144100 rs498831 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop,genotype-conflict 1005 chr1 55149253 55149254 rs744748 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2899.000000,2109.000000,2109.000000,2899.000000, 0.289437,0.210563,0.210563,0.289437, maf-5-some-pop,maf-5-all-pops 1005 chr1 55149378 55149379 rs744746 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 832.000000,4176.000000,4176.000000,832.000000, 0.083067,0.416933,0.416933,0.083067, maf-5-some-pop 1005 chr1 55149727 55149728 rs879063 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3986.000000,1022.000000, 0.795927,0.204073, maf-5-some-pop,maf-5-all-pops 1005 chr1 55152222 55152223 rs17110938 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3985.000000,1023.000000, 0.795727,0.204273, maf-5-some-pop,maf-5-all-pops 1005 chr1 55155901 55155902 rs12239874 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3854.000000,1154.000000, 0.769569,0.230431, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1005 chr1 55161843 55161844 rs6671173 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop,maf-5-all-pops 1005 chr1 55168297 55168298 rs3765018 0 - G G C/T genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 409.000000,4599.000000,4599.000000,409.000000, 0.040835,0.459165,0.459165,0.040835, maf-5-some-pop,genotype-conflict 1005 chr1 55168393 55168394 rs3765017 0 - A A C/T genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,CORNELL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4598.000000,410.000000,410.000000,4598.000000, 0.459065,0.040935,0.040935,0.459065, maf-5-some-pop,genotype-conflict 1005 chr1 55171523 55171524 rs1180975 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3916.000000,1092.000000,1092.000000,3916.000000, 0.390974,0.109026,0.109026,0.390974, maf-5-some-pop,maf-5-all-pops 1005 chr1 55179004 55179005 rs1749859 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 1006 chr1 55182228 55182229 rs3820104 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE, 2 A,G, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 1006 chr1 55182299 55182300 rs1147990 0 - T T A/T genomic single unknown 0 0 ncRNA,missense exact 1 33 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1006 chr1 55186661 55186662 rs1180973 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,GMI,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1006 chr1 55186685 55186686 rs10489663 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 652.000000,4356.000000,4356.000000,652.000000, 0.065096,0.434904,0.434904,0.065096, maf-5-some-pop,genotype-conflict 1006 chr1 55188248 55188249 rs17110982 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop 1006 chr1 55188381 55188382 rs11550481 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 22 1000GENOMES,AFFY,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop 1006 chr1 55191643 55191644 rs1180937 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 955.000000,4053.000000,4053.000000,955.000000, 0.095347,0.404653,0.404653,0.095347, maf-5-some-pop,microattr-tpa 1006 chr1 55193871 55193872 rs1925653 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4837.000000,171.000000,171.000000,4837.000000, 0.482927,0.017073,0.017073,0.482927, maf-5-some-pop 1006 chr1 55195907 55195908 rs11802570 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,T, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop 1006 chr1 55195919 55195920 rs11804079 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop 1006 chr1 55196098 55196099 rs4926653 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3485.000000,1523.000000, 0.695887,0.304113, maf-5-some-pop 1006 chr1 55196738 55196739 rs41528549 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,AFFY_GWHS,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 800.000000,4208.000000, 0.159744,0.840256, maf-5-some-pop 1006 chr1 55197148 55197149 rs3815226 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3730.000000,1278.000000,1278.000000,3730.000000, 0.372404,0.127596,0.127596,0.372404, maf-5-some-pop 1006 chr1 55207753 55207754 rs13046 0 - C C C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1006 chr1 55210959 55210960 rs10888877 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2379.000000,2629.000000, 0.475040,0.524960, maf-5-some-pop,maf-5-all-pops 1006 chr1 55211396 55211397 rs4927155 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1979.000000,3029.000000, 0.395168,0.604832, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1006 chr1 55212718 55212719 rs6698255 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 819.000000,4189.000000, 0.163538,0.836462, maf-5-some-pop 1006 chr1 55212797 55212798 rs6683397 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4365.000000,643.000000, 0.871605,0.128395, maf-5-some-pop 1006 chr1 55216127 55216128 rs12038851 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1676.000000,3332.000000, 0.334665,0.665335, maf-5-some-pop 1006 chr1 55217306 55217307 rs17515141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4356.000000,652.000000, 0.869808,0.130192, maf-5-some-pop,genotype-conflict 1006 chr1 55217733 55217734 rs1180967 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4786.000000,222.000000,222.000000,4786.000000, 0.477835,0.022165,0.022165,0.477835, maf-5-some-pop,genotype-conflict 1006 chr1 55217803 55217804 rs1180966 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 222.000000,4786.000000,4786.000000,222.000000, 0.022165,0.477835,0.477835,0.022165, maf-5-some-pop,genotype-conflict 1006 chr1 55217971 55217972 rs17111010 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 1006 chr1 55218029 55218030 rs12092772 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop 1006 chr1 55218154 55218155 rs2108035 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1647.000000,3361.000000,3361.000000,1647.000000, 0.164437,0.335563,0.335563,0.164437, maf-5-some-pop,maf-5-all-pops 1006 chr1 55222079 55222080 rs2764822 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1516.000000,3492.000000, 0.302716,0.697284, maf-5-some-pop 1006 chr1 55225845 55225846 rs1180955 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1462.000000,3546.000000,3546.000000,1462.000000, 0.145966,0.354034,0.354034,0.145966, maf-5-some-pop 1006 chr1 55227579 55227580 rs2057939 0 - A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 1006 chr1 55228128 55228129 rs1180949 0 - T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1006 chr1 55228158 55228159 rs1180948 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1006 chr1 55230311 55230312 rs2301940 0 - G G A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 267.000000,4741.000000,4741.000000,267.000000, 0.026657,0.473343,0.473343,0.026657, maf-5-some-pop 1006 chr1 55234519 55234520 rs1180939 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 806.000000,4202.000000,4202.000000,806.000000, 0.080471,0.419529,0.419529,0.080471, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1006 chr1 55234710 55234711 rs10430114 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3497.000000,1511.000000, 0.698283,0.301717, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1006 chr1 55243318 55243319 rs10888878 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 664.000000,4344.000000, 0.132588,0.867412, maf-5-some-pop 1006 chr1 55243589 55243590 rs10888879 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 1006 chr1 55251451 55251452 rs2270001 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1418.000000,3590.000000,3590.000000,1418.000000, 0.141573,0.358427,0.358427,0.141573, maf-5-some-pop,maf-5-all-pops 1006 chr1 55255582 55255583 rs1180936 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 1006 chr1 55260950 55260951 rs3753402 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 3 C,G,T, 9.000000,4710.000000,289.000000, 0.001797,0.940495,0.057708, maf-5-some-pop,genotype-conflict 1006 chr1 55261208 55261209 rs3753403 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 1006 chr1 55261389 55261390 rs649398 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3498.000000,1510.000000,1510.000000,3498.000000, 0.349241,0.150759,0.150759,0.349241, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1006 chr1 55262165 55262166 rs880755 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3608.000000,1400.000000, 0.720447,0.279553, maf-5-some-pop,maf-5-all-pops 1006 chr1 55265267 55265268 rs12123513 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 1006 chr1 55266025 55266026 rs7537749 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 1006 chr1 55270029 55270030 rs11206431 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,maf-5-all-pops 1006 chr1 55275629 55275630 rs12068840 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2381.000000,2627.000000, 0.475439,0.524561, maf-5-some-pop,maf-5-all-pops 1006 chr1 55283075 55283076 rs4926658 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2898.000000,2110.000000, 0.578674,0.421326, maf-5-some-pop 1006 chr1 55283717 55283718 rs11585605 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 1006 chr1 55292547 55292548 rs654827 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 986.000000,4022.000000,4022.000000,986.000000, 0.098442,0.401558,0.401558,0.098442, maf-5-some-pop,maf-5-all-pops 1006 chr1 55294721 55294722 rs4926659 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2731.000000,2277.000000, 0.545327,0.454673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1006 chr1 55296263 55296264 rs7366025 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop,maf-5-all-pops 1006 chr1 55299004 55299005 rs11588319 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4024.000000,984.000000, 0.803514,0.196486, maf-5-some-pop,maf-5-all-pops 1006 chr1 55299138 55299139 rs141014 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1173.000000,3835.000000,3835.000000,1173.000000, 0.117113,0.382887,0.382887,0.117113, maf-5-some-pop,genotype-conflict 1006 chr1 55303438 55303439 rs6681687 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1435.000000,3573.000000, 0.286542,0.713458, maf-5-some-pop,maf-5-all-pops 1006 chr1 55303781 55303782 rs12141358 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3571.000000,1437.000000, 0.713059,0.286941, maf-5-some-pop,maf-5-all-pops 1006 chr1 55304722 55304723 rs17111092 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4690.000000,318.000000, 0.936502,0.063498, maf-5-some-pop 1006 chr1 55304835 55304836 rs17575462 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,genotype-conflict 1006 chr1 55307692 55307693 rs17111100 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops 1006 chr1 55308038 55308039 rs4927165 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops 1006 chr1 55308608 55308609 rs10489659 0 - G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1007 chr1 55312477 55312478 rs593722 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1965.000000,3043.000000,3043.000000,1965.000000, 0.196186,0.303814,0.303814,0.196186, maf-5-some-pop,maf-5-all-pops 1007 chr1 55312898 55312899 rs591904 0 - G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 1007 chr1 55313160 55313161 rs590621 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1966.000000,3042.000000,3042.000000,1966.000000, 0.196286,0.303714,0.303714,0.196286, maf-5-some-pop,maf-5-all-pops 1007 chr1 55313354 55313355 rs594365 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3043.000000,1965.000000, 0.607628,0.392372, maf-5-some-pop,maf-5-all-pops 1007 chr1 55315087 55315088 rs669181 0 - C C A/G genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2183.000000,2825.000000,2825.000000,2183.000000, 0.217951,0.282049,0.282049,0.217951, maf-5-some-pop,maf-5-all-pops 1007 chr1 55319901 55319902 rs718265 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 32 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1865.000000,3143.000000, 0.372404,0.627596, maf-5-some-pop,maf-5-all-pops 1007 chr1 55324149 55324150 rs12133305 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4633.000000,375.000000, 0.925120,0.074880, maf-5-some-pop 1007 chr1 55324872 55324873 rs2288315 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop 1007 chr1 55325793 55325794 rs11206455 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1906.000000,3102.000000, 0.380591,0.619409, maf-5-some-pop,maf-5-all-pops 1007 chr1 55326344 55326345 rs4927168 0 + A A A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1075.000000,3933.000000, 0.214657,0.785343, maf-5-some-pop,genotype-conflict 1007 chr1 55326932 55326933 rs6676123 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3354.000000,1654.000000, 0.669728,0.330272, maf-5-some-pop,maf-5-all-pops 1007 chr1 55327491 55327492 rs6666716 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2030.000000,2978.000000, 0.405351,0.594649, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55327939 55327940 rs12025718 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1347.000000,3661.000000, 0.268970,0.731030, maf-5-some-pop,maf-5-all-pops 1007 chr1 55329104 55329105 rs582222 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3250.000000,1758.000000, 0.648962,0.351038, maf-5-some-pop,maf-5-all-pops 1007 chr1 55330629 55330630 rs17111142 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop 1007 chr1 55330965 55330966 rs611057 0 + T T C/T genomic single unknown 0 0 intron exact 1 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 1007 chr1 55332535 55332536 rs628508 0 + C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,maf-5-all-pops 1007 chr1 55336096 55336097 rs11206457 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1903.000000,3105.000000, 0.379992,0.620008, maf-5-some-pop,maf-5-all-pops 1007 chr1 55336949 55336950 rs608458 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2110.000000,2898.000000, 0.421326,0.578674, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55337314 55337315 rs2303534 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4739.000000,269.000000, 0.946286,0.053714, maf-5-some-pop 1007 chr1 55338678 55338679 rs7551288 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3073.000000,1935.000000, 0.613618,0.386382, maf-5-some-pop,maf-5-all-pops 1007 chr1 55339085 55339086 rs6686859 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3650.000000,1358.000000, 0.728834,0.271166, maf-5-some-pop,maf-5-all-pops 1007 chr1 55341914 55341915 rs638944 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2428.000000,2580.000000, 0.484824,0.515176, maf-5-some-pop,maf-5-all-pops 1007 chr1 55342794 55342795 rs588743 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 1007 chr1 55342928 55342929 rs589244 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2534.000000,2474.000000, 0.505990,0.494010, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55345836 55345837 rs589895 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 446.000000,4562.000000, 0.089058,0.910942, maf-5-some-pop 1007 chr1 55354301 55354302 rs3170766 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1932.000000,3076.000000, 0.385783,0.614217, maf-5-some-pop,maf-5-all-pops 1007 chr1 55354334 55354335 rs4927176 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55362809 55362810 rs658472 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 1007 chr1 55379938 55379939 rs619895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 1007 chr1 55386166 55386167 rs1469344 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4130.000000,878.000000, 0.824681,0.175319, maf-5-some-pop 1007 chr1 55387361 55387362 rs677321 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3501.000000,1507.000000, 0.699081,0.300919, maf-5-some-pop,genotype-conflict 1007 chr1 55387636 55387637 rs678358 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3492.000000,1516.000000, 0.697284,0.302716, maf-5-some-pop,genotype-conflict 1007 chr1 55388305 55388306 rs11206466 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1755.000000,3253.000000, 0.350439,0.649561, maf-5-some-pop,maf-5-all-pops 1007 chr1 55388479 55388480 rs12141717 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1570.000000,3438.000000, 0.313498,0.686502, maf-5-some-pop,maf-5-all-pops 1007 chr1 55389568 55389569 rs41517445 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 3892.000000,1116.000000,1116.000000,3892.000000, 0.388578,0.111422,0.111422,0.388578, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55390840 55390841 rs582679 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop,maf-5-all-pops 1007 chr1 55391267 55391268 rs35526112 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 1007 chr1 55394647 55394648 rs2114580 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1819.000000,3189.000000, 0.363219,0.636781, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55397615 55397616 rs11206471 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop 1007 chr1 55398276 55398277 rs6588538 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2151.000000,2857.000000, 0.429513,0.570487, maf-5-some-pop,maf-5-all-pops 1007 chr1 55398931 55398932 rs11206473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1597.000000,3411.000000, 0.318890,0.681110, maf-5-some-pop,maf-5-all-pops 1007 chr1 55404021 55404022 rs1889209 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1802.000000,3206.000000, 0.359824,0.640176, maf-5-some-pop,maf-5-all-pops 1007 chr1 55405531 55405532 rs6687523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 1007 chr1 55416826 55416827 rs11206480 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3781.000000,1227.000000, 0.754992,0.245008, maf-5-some-pop 1007 chr1 55416973 55416974 rs7524689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 1007 chr1 55418247 55418248 rs7530321 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3002.000000,2006.000000, 0.599441,0.400559, maf-5-some-pop,maf-5-all-pops 1007 chr1 55418262 55418263 rs7520033 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2008.000000,3000.000000, 0.400958,0.599042, maf-5-some-pop,maf-5-all-pops 1007 chr1 55418975 55418976 rs6701789 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1628.000000,3380.000000, 0.325080,0.674920, maf-5-some-pop,maf-5-all-pops 1007 chr1 55419854 55419855 rs11206482 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop 1007 chr1 55426440 55426441 rs7539163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3392.000000,1616.000000, 0.677316,0.322684, maf-5-some-pop,maf-5-all-pops 1007 chr1 55428396 55428397 rs7523658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3271.000000,1737.000000, 0.653155,0.346845, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1007 chr1 55430370 55430371 rs7551637 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,maf-5-all-pops 1007 chr1 55434647 55434648 rs2317951 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop 1007 chr1 55435369 55435370 rs7528991 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1547.000000,3461.000000, 0.308906,0.691094, maf-5-some-pop,maf-5-all-pops 1007 chr1 55436492 55436493 rs7532349 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3303.000000,1705.000000, 0.659545,0.340455, maf-5-some-pop,maf-5-all-pops 1007 chr1 55436789 55436790 rs11206497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop 1007 chr1 55437511 55437512 rs17111402 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop,maf-5-all-pops 1007 chr1 55438924 55438925 rs11206499 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4137.000000,871.000000, 0.826078,0.173922, maf-5-some-pop,genotype-conflict 1007 chr1 55441039 55441040 rs1544909 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 1007 chr1 55441098 55441099 rs1544910 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 4966.000000,42.000000, 0.991613,0.008387, 1008 chr1 55443604 55443605 rs2433673 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55445561 55445562 rs2500321 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2873.000000,2135.000000, 0.573682,0.426318, maf-5-some-pop,maf-5-all-pops 1008 chr1 55449272 55449273 rs1015979 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1675.000000,3333.000000, 0.334465,0.665535, maf-5-some-pop,maf-5-all-pops 1008 chr1 55449617 55449618 rs2495516 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1663.000000,3345.000000,3345.000000,1663.000000, 0.166034,0.333966,0.333966,0.166034, maf-5-some-pop,maf-5-all-pops 1008 chr1 55453390 55453391 rs13374752 0 + A A A/G genomic single unknown 0 0 intron exact 1 MixedObserved 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,genotype-conflict 1008 chr1 55457814 55457815 rs2495513 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 31 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3944.000000,1064.000000,1064.000000,3944.000000, 0.393770,0.106230,0.106230,0.393770, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55460190 55460191 rs2500332 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1071.000000,3937.000000, 0.213858,0.786142, maf-5-some-pop,maf-5-all-pops 1008 chr1 55461493 55461494 rs2500335 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55462379 55462380 rs9887913 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop,genotype-conflict 1008 chr1 55463085 55463086 rs11206502 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4256.000000,752.000000, 0.849840,0.150160, maf-5-some-pop 1008 chr1 55463569 55463570 rs17111412 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 517.000000,4491.000000, 0.103235,0.896765, maf-5-some-pop 1008 chr1 55464742 55464743 rs2500340 0 + T T C/T genomic single unknown 0 0 untranslated-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2975.000000,2033.000000, 0.594050,0.405950, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55471298 55471299 rs9661809 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3274.000000,1734.000000, 0.653754,0.346246, maf-5-some-pop,maf-5-all-pops 1008 chr1 55471467 55471468 rs9662946 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop 1008 chr1 55474324 55474325 rs6682884 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 3193.000000,1815.000000, 0.637580,0.362420, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55474475 55474476 rs4339899 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2855.000000,2153.000000, 0.570088,0.429912, maf-5-some-pop,maf-5-all-pops 1008 chr1 55480073 55480074 rs2479398 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4770.000000,238.000000,238.000000,4770.000000, 0.476238,0.023762,0.023762,0.476238, maf-5-some-pop 1008 chr1 55480360 55480361 rs2149040 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 122.000000,4886.000000,4886.000000,122.000000, 0.012181,0.487819,0.487819,0.012181, maf-5-some-pop 1008 chr1 55480373 55480374 rs2149039 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 1008 chr1 55480503 55480504 rs2149038 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2137.000000,2871.000000,2871.000000,2137.000000, 0.213359,0.286641,0.286641,0.213359, maf-5-some-pop,maf-5-all-pops 1008 chr1 55481103 55481104 rs2864123 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 228.000000,4780.000000,4780.000000,228.000000, 0.022764,0.477236,0.477236,0.022764, maf-5-some-pop 1008 chr1 55481831 55481832 rs17111479 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1668.000000,3340.000000, 0.333067,0.666933, maf-5-some-pop,maf-5-all-pops 1008 chr1 55484809 55484810 rs2495505 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3713.000000,1295.000000,1295.000000,3713.000000, 0.370707,0.129293,0.129293,0.370707, maf-5-some-pop 1008 chr1 55486063 55486064 rs2479394 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2935.000000,2073.000000,2073.000000,2935.000000, 0.293031,0.206969,0.206969,0.293031, maf-5-some-pop,maf-5-all-pops 1008 chr1 55488368 55488369 rs2479393 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1729.000000,3279.000000,3279.000000,1729.000000, 0.172624,0.327376,0.327376,0.172624, maf-5-some-pop,maf-5-all-pops 1008 chr1 55495743 55495744 rs2479417 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2813.000000,2195.000000,2195.000000,2813.000000, 0.280851,0.219149,0.219149,0.280851, maf-5-some-pop,maf-5-all-pops 1008 chr1 55495994 55495995 rs2495497 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1049.000000,3959.000000,3959.000000,1049.000000, 0.104732,0.395268,0.395268,0.104732, maf-5-some-pop 1008 chr1 55496038 55496039 rs11206510 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PAGE_STUDY,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 510.000000,4498.000000, 0.101837,0.898163, maf-5-some-pop,microattr-tpa 1008 chr1 55496175 55496176 rs17111490 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop 1008 chr1 55497301 55497302 rs2094470 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4301.000000,707.000000,707.000000,4301.000000, 0.429413,0.070587,0.070587,0.429413, maf-5-some-pop 1008 chr1 55498948 55498949 rs7523242 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3553.000000,1455.000000, 0.709465,0.290535, maf-5-some-pop,maf-5-all-pops 1008 chr1 55500205 55500206 rs2495488 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 583.000000,4425.000000,4425.000000,583.000000, 0.058207,0.441793,0.441793,0.058207, maf-5-some-pop 1008 chr1 55500428 55500429 rs2182833 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop,maf-5-all-pops 1008 chr1 55500975 55500976 rs10788994 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3503.000000,1505.000000, 0.699481,0.300519, maf-5-some-pop,maf-5-all-pops 1008 chr1 55502136 55502137 rs2149041 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3664.000000,1344.000000, 0.731629,0.268371, maf-5-some-pop 1008 chr1 55504649 55504650 rs2479409 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,RSG_UW,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3012.000000,1996.000000, 0.601438,0.398562, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa 1008 chr1 55507955 55507956 rs6656066 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 1008 chr1 55509354 55509355 rs2495480 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PJP,RSG_UW,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4538.000000,470.000000,470.000000,4538.000000, 0.453075,0.046925,0.046925,0.453075, maf-5-some-pop 1008 chr1 55513060 55513061 rs10888897 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2832.000000,2176.000000, 0.565495,0.434505, maf-5-some-pop,maf-5-all-pops 1008 chr1 55513168 55513169 rs12066265 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SC_SNP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 1008 chr1 55514072 55514073 rs2479412 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4548.000000,460.000000, 0.908147,0.091853, maf-5-some-pop 1008 chr1 55514530 55514531 rs7554001 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PGA-UW-FHCRC,TISHKOFF,WI_SSAHASNP, 2 G,T, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 1008 chr1 55515736 55515737 rs12063962 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SC_SNP,TISHKOFF, 2 A,G, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 1008 chr1 55518466 55518467 rs2495477 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PGA-UW-FHCRC,PJP,RSG_UW,SC_JCM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2673.000000,2335.000000,2335.000000,2673.000000, 0.266873,0.233127,0.233127,0.266873, maf-5-some-pop,maf-5-all-pops 1008 chr1 55518681 55518682 rs2479413 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3220.000000,1788.000000, 0.642971,0.357029, maf-5-some-pop,maf-5-all-pops 1008 chr1 55518751 55518752 rs7552841 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3631.000000,1377.000000, 0.725040,0.274960, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55521108 55521109 rs693668 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2904.000000,2104.000000, 0.579872,0.420128, maf-5-some-pop,maf-5-all-pops 1008 chr1 55524841 55524842 rs568052 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3376.000000,1632.000000,1632.000000,3376.000000, 0.337061,0.162939,0.162939,0.337061, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55524970 55524971 rs11206516 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PGA-UW-FHCRC,SC_SNP,TISHKOFF, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop 1008 chr1 55527478 55527479 rs631220 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PGA-UW-FHCRC,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 695.000000,4313.000000, 0.138778,0.861222, maf-5-some-pop,genotype-conflict 1008 chr1 55529186 55529187 rs505151 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 36 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORRELAGEN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PGA-UW-FHCRC,PJP,RSG_UW,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4502.000000,506.000000, 0.898962,0.101038, clinically-assoc,maf-5-some-pop,submitted-by-lsdb,genotype-conflict 1008 chr1 55529870 55529871 rs17111557 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGA-UW-FHCRC,RSG_UW,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 1008 chr1 55532741 55532742 rs13312 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4070.000000,938.000000, 0.812700,0.187300, clinically-assoc,maf-5-some-pop,has-omim-omia 1008 chr1 55536002 55536003 rs17111567 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop 1008 chr1 55537197 55537198 rs17111568 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 1008 chr1 55541049 55541050 rs2297564 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BGI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,YUSUKE, 2 C,T, 4965.000000,43.000000, 0.991414,0.008586, maf-5-some-pop 1008 chr1 55541680 55541681 rs17111573 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop,genotype-conflict 1008 chr1 55541895 55541896 rs593398 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 1008 chr1 55542602 55542603 rs6694813 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,genotype-conflict 1008 chr1 55546125 55546126 rs12078480 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 1008 chr1 55546894 55546895 rs683880 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55552568 55552569 rs679804 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4524.000000,484.000000,484.000000,4524.000000, 0.451677,0.048323,0.048323,0.451677, maf-5-some-pop 1008 chr1 55552635 55552636 rs17111592 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,genotype-conflict 1008 chr1 55553225 55553226 rs6588546 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop 1008 chr1 55553995 55553996 rs13375940 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 1008 chr1 55567142 55567143 rs1165282 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 454.000000,4554.000000,4554.000000,454.000000, 0.045327,0.454673,0.454673,0.045327, maf-5-some-pop,genotype-conflict 1008 chr1 55567409 55567410 rs615652 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 31 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 479.000000,4529.000000,4529.000000,479.000000, 0.047823,0.452177,0.452177,0.047823, maf-5-some-pop,genotype-conflict 1008 chr1 55572564 55572565 rs745047 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4777.000000,231.000000,231.000000,4777.000000, 0.476937,0.023063,0.023063,0.476937, maf-5-some-pop 1008 chr1 55572866 55572867 rs594226 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3465.000000,1543.000000,1543.000000,3465.000000, 0.345946,0.154054,0.154054,0.345946, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1008 chr1 55574136 55574137 rs730717 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 A,T, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,genotype-conflict 1009 chr1 55577015 55577016 rs17111639 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop,genotype-conflict 1009 chr1 55590464 55590465 rs17111652 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4487.000000,521.000000, 0.895966,0.104034, maf-5-some-pop 1009 chr1 55593545 55593546 rs640238 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1108.000000,3900.000000,3900.000000,1108.000000, 0.110623,0.389377,0.389377,0.110623, maf-5-some-pop 1009 chr1 55594835 55594836 rs1165219 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,genotype-conflict 1009 chr1 55596586 55596587 rs1475702 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1158.000000,3850.000000, 0.231230,0.768770, maf-5-some-pop,genotype-conflict 1009 chr1 55596715 55596716 rs1475703 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1009 chr1 55599218 55599219 rs1165237 0 + C C A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 1009 chr1 55616753 55616754 rs1165227 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4523.000000,485.000000, 0.903155,0.096845, maf-5-some-pop 1009 chr1 55625547 55625548 rs17111684 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop,microattr-tpa 1009 chr1 55626675 55626676 rs17111688 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 1009 chr1 55627359 55627360 rs17403634 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop,genotype-conflict 1009 chr1 55627524 55627525 rs17111689 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 1009 chr1 55629966 55629967 rs1759497 0 + C C C/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop 1009 chr1 55647271 55647272 rs11206521 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 1009 chr1 55652982 55652983 rs6676563 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops 1009 chr1 55663371 55663372 rs12130799 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PAGE_STUDY,PJP,SC_SNP, 2 A,G, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop 1009 chr1 55664059 55664060 rs287231 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop 1009 chr1 55678498 55678499 rs287235 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3670.000000,1338.000000, 0.732827,0.267173, maf-5-some-pop,maf-5-all-pops 1009 chr1 55686615 55686616 rs17111725 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4333.000000,675.000000, 0.865216,0.134784, maf-5-some-pop,maf-5-all-pops 1009 chr1 55695280 55695281 rs10493180 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 1009 chr1 55695534 55695535 rs2902875 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 1009 chr1 55699022 55699023 rs10788998 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3634.000000,1374.000000, 0.725639,0.274361, maf-5-some-pop,maf-5-all-pops 1009 chr1 55704894 55704895 rs2173355 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop,genotype-conflict 1010 chr1 55712079 55712080 rs11206534 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4517.000000,491.000000, 0.901957,0.098043, maf-5-some-pop,maf-5-all-pops 1010 chr1 55712334 55712335 rs11206536 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 489.000000,4519.000000, 0.097644,0.902356, maf-5-some-pop,maf-5-all-pops 1010 chr1 55712357 55712358 rs11206537 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55713946 55713947 rs4927208 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop,genotype-conflict 1010 chr1 55715411 55715412 rs11206538 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2004.000000,3004.000000, 0.400160,0.599840, maf-5-some-pop 1010 chr1 55715607 55715608 rs2647287 0 - T T A/G genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 59.000000,4949.000000,4949.000000,59.000000, 0.005891,0.494109,0.494109,0.005891, maf-5-some-pop 1010 chr1 55718413 55718414 rs17111754 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 373.000000,4635.000000, 0.074481,0.925519, maf-5-some-pop,maf-5-all-pops 1010 chr1 55719041 55719042 rs12239399 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop,maf-5-all-pops 1010 chr1 55723440 55723441 rs2802861 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4602.000000,406.000000,406.000000,4602.000000, 0.459465,0.040535,0.040535,0.459465, maf-5-some-pop 1010 chr1 55729367 55729368 rs11206546 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 1010 chr1 55731216 55731217 rs17413897 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 2943.000000,2065.000000, 0.587660,0.412340, maf-5-some-pop,maf-5-all-pops 1010 chr1 55731431 55731432 rs17111811 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop 1010 chr1 55731732 55731733 rs6693986 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2945.000000,2063.000000, 0.588059,0.411941, maf-5-some-pop,maf-5-all-pops 1010 chr1 55742209 55742210 rs4927213 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2597.000000,2411.000000, 0.518570,0.481430, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55742321 55742322 rs4927214 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop 1010 chr1 55742836 55742837 rs12239436 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,microattr-tpa 1010 chr1 55743296 55743297 rs1874774 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop 1010 chr1 55743329 55743330 rs1874775 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1036.000000,3972.000000, 0.206869,0.793131, maf-5-some-pop 1010 chr1 55744057 55744058 rs11589982 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3510.000000,1498.000000, 0.700879,0.299121, maf-5-some-pop,maf-5-all-pops 1010 chr1 55744428 55744429 rs2047420 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2003.000000,3005.000000, 0.399960,0.600040, maf-5-some-pop,maf-5-all-pops 1010 chr1 55748969 55748970 rs17111836 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 1010 chr1 55748992 55748993 rs17111838 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 1010 chr1 55749182 55749183 rs1566209 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 1010 chr1 55749648 55749649 rs4927218 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,genotype-conflict 1010 chr1 55750137 55750138 rs11811416 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 1010 chr1 55750599 55750600 rs9730100 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3168.000000,1840.000000, 0.632588,0.367412, maf-5-some-pop,maf-5-all-pops 1010 chr1 55751820 55751821 rs4927219 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 1010 chr1 55752439 55752440 rs17111859 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1135.000000,3873.000000, 0.226637,0.773363, maf-5-some-pop,maf-5-all-pops 1010 chr1 55752895 55752896 rs17111863 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55757022 55757023 rs17111875 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop 1010 chr1 55757806 55757807 rs10888912 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2176.000000,2832.000000, 0.434505,0.565495, maf-5-some-pop,maf-5-all-pops 1010 chr1 55757941 55757942 rs12058834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,maf-5-all-pops 1010 chr1 55759196 55759197 rs2864899 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop 1010 chr1 55766588 55766589 rs4927221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops 1010 chr1 55767312 55767313 rs2047421 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 1010 chr1 55767799 55767800 rs12044272 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 391.000000,4617.000000, 0.078075,0.921925, maf-5-some-pop 1010 chr1 55771261 55771262 rs12044406 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop 1010 chr1 55775049 55775050 rs1498225 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4464.000000,544.000000,544.000000,4464.000000, 0.445687,0.054313,0.054313,0.445687, maf-5-some-pop 1010 chr1 55775084 55775085 rs1498224 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 1010 chr1 55775664 55775665 rs6669253 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop 1010 chr1 55779041 55779042 rs17111899 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop 1010 chr1 55779386 55779387 rs6682708 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop,genotype-conflict 1010 chr1 55780483 55780484 rs2647274 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 79.000000,4929.000000,4929.000000,79.000000, 0.007887,0.492113,0.492113,0.007887, maf-5-some-pop 1010 chr1 55780820 55780821 rs1807871 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3533.000000,1475.000000,1475.000000,3533.000000, 0.352736,0.147264,0.147264,0.352736, maf-5-some-pop,maf-5-all-pops 1010 chr1 55780932 55780933 rs952574 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2335.000000,2673.000000,2673.000000,2335.000000, 0.233127,0.266873,0.266873,0.233127, maf-5-some-pop,genotype-conflict 1010 chr1 55781280 55781281 rs207154 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 4542.000000,466.000000,466.000000,4542.000000, 0.453474,0.046526,0.046526,0.453474, maf-5-some-pop 1010 chr1 55784525 55784526 rs17111903 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 1010 chr1 55784928 55784929 rs207152 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1103.000000,3905.000000,3905.000000,1103.000000, 0.110124,0.389876,0.389876,0.110124, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55785671 55785672 rs6676932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4042.000000,966.000000, 0.807109,0.192891, maf-5-some-pop,maf-5-all-pops 1010 chr1 55785773 55785774 rs17111909 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,genotype-conflict 1010 chr1 55785814 55785815 rs6677134 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop,maf-5-all-pops 1010 chr1 55786822 55786823 rs17111918 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop 1010 chr1 55787757 55787758 rs10489489 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 165.000000,4843.000000,4843.000000,165.000000, 0.016474,0.483526,0.483526,0.016474, maf-5-some-pop,microattr-tpa 1010 chr1 55788280 55788281 rs2746678 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3468.000000,1540.000000,1540.000000,3468.000000, 0.346246,0.153754,0.153754,0.346246, maf-5-some-pop,maf-5-all-pops 1010 chr1 55789350 55789351 rs17111925 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,microattr-tpa 1010 chr1 55789789 55789790 rs2746676 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 172.000000,4836.000000,4836.000000,172.000000, 0.017173,0.482827,0.482827,0.017173, maf-5-some-pop 1010 chr1 55790860 55790861 rs726815 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4283.000000,725.000000,725.000000,4283.000000, 0.427616,0.072384,0.072384,0.427616, maf-5-some-pop 1010 chr1 55792721 55792722 rs10489488 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 4 A,C,G,T, 175.000000,4833.000000,4833.000000,175.000000, 0.017472,0.482528,0.482528,0.017472, maf-5-some-pop,microattr-tpa 1010 chr1 55792815 55792816 rs7534376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4510.000000,498.000000, 0.900559,0.099441, maf-5-some-pop,microattr-tpa 1010 chr1 55792924 55792925 rs207175 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3427.000000,1581.000000,1581.000000,3427.000000, 0.342153,0.157847,0.157847,0.342153, maf-5-some-pop 1010 chr1 55793371 55793372 rs10489487 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 4504.000000,504.000000,504.000000,4504.000000, 0.449681,0.050319,0.050319,0.449681, maf-5-some-pop,genotype-conflict 1010 chr1 55795001 55795002 rs17111956 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop 1010 chr1 55796085 55796086 rs207173 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 193.000000,4815.000000,4815.000000,193.000000, 0.019269,0.480731,0.480731,0.019269, maf-5-some-pop 1010 chr1 55797010 55797011 rs17111957 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop 1010 chr1 55799091 55799092 rs17111966 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,genotype-conflict 1010 chr1 55799769 55799770 rs207164 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1445.000000,3563.000000,3563.000000,1445.000000, 0.144269,0.355731,0.355731,0.144269, maf-5-some-pop,maf-5-all-pops 1010 chr1 55803410 55803411 rs207160 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1456.000000,3552.000000,3552.000000,1456.000000, 0.145367,0.354633,0.354633,0.145367, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55806062 55806063 rs6694538 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3863.000000,1145.000000, 0.771366,0.228634, maf-5-some-pop,maf-5-all-pops 1010 chr1 55806464 55806465 rs207150 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 150.000000,4858.000000,4858.000000,150.000000, 0.014976,0.485024,0.485024,0.014976, maf-5-some-pop,microattr-tpa 1010 chr1 55807258 55807259 rs207149 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2568.000000,2440.000000,2440.000000,2568.000000, 0.256390,0.243610,0.243610,0.256390, maf-5-some-pop,maf-5-all-pops 1010 chr1 55807500 55807501 rs207148 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2452.000000,2556.000000,2556.000000,2452.000000, 0.244808,0.255192,0.255192,0.244808, maf-5-some-pop,maf-5-all-pops 1010 chr1 55812879 55812880 rs12117114 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2859.000000,2149.000000, 0.570887,0.429113, maf-5-some-pop,maf-5-all-pops 1010 chr1 55814163 55814164 rs207136 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4144.000000,864.000000,864.000000,4144.000000, 0.413738,0.086262,0.086262,0.413738, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55814243 55814244 rs207135 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4144.000000,864.000000,864.000000,4144.000000, 0.413738,0.086262,0.086262,0.413738, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55815583 55815584 rs207127 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4461.000000,547.000000,547.000000,4461.000000, 0.445387,0.054613,0.054613,0.445387, maf-5-some-pop,microattr-tpa 1010 chr1 55818886 55818887 rs17111989 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,genotype-conflict 1010 chr1 55820098 55820099 rs880385 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2804.000000,2204.000000, 0.559904,0.440096, maf-5-some-pop,maf-5-all-pops 1010 chr1 55820263 55820264 rs880386 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3473.000000,1535.000000, 0.693490,0.306510, maf-5-some-pop,maf-5-all-pops 1010 chr1 55820440 55820441 rs41438246 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,SSMP, 2 A,G, 27.000000,4981.000000, 0.005391,0.994609, 1010 chr1 55820636 55820637 rs2746689 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3213.000000,1795.000000,1795.000000,3213.000000, 0.320787,0.179213,0.179213,0.320787, maf-5-some-pop,maf-5-all-pops 1010 chr1 55820712 55820713 rs2179853 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 814.000000,4194.000000,4194.000000,814.000000, 0.081270,0.418730,0.418730,0.081270, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55822284 55822285 rs207190 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF, 2 C,G, 3131.000000,1877.000000, 0.625200,0.374800, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1010 chr1 55829983 55829984 rs17112012 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,genotype-conflict 1010 chr1 55831677 55831678 rs2746688 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4894.000000,114.000000,114.000000,4894.000000, 0.488618,0.011382,0.011382,0.488618, maf-5-some-pop 1010 chr1 55831917 55831918 rs2802881 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 185.000000,4823.000000,4823.000000,185.000000, 0.018470,0.481530,0.481530,0.018470, maf-5-some-pop 1010 chr1 55832030 55832031 rs12141667 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1312.000000,3696.000000, 0.261981,0.738019, maf-5-some-pop,maf-5-all-pops 1010 chr1 55833350 55833351 rs910270 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1368.000000,3640.000000,3640.000000,1368.000000, 0.136581,0.363419,0.363419,0.136581, maf-5-some-pop,maf-5-all-pops 1010 chr1 55833562 55833563 rs6687111 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 1010 chr1 55834212 55834213 rs13374241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 1010 chr1 55834308 55834309 rs7520205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops 1010 chr1 55834514 55834515 rs4927230 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3766.000000,1242.000000, 0.751997,0.248003, maf-5-some-pop,genotype-conflict 1010 chr1 55834932 55834933 rs7544050 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2023.000000,2985.000000, 0.403954,0.596046, maf-5-some-pop,maf-5-all-pops 1010 chr1 55835252 55835253 rs7523391 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 1010 chr1 55836169 55836170 rs12077380 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 1011 chr1 55837602 55837603 rs2746685 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 239.000000,4769.000000,4769.000000,239.000000, 0.023862,0.476138,0.476138,0.023862, maf-5-some-pop,genotype-conflict 1011 chr1 55838571 55838572 rs3946077 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1396.000000,3612.000000,3612.000000,1396.000000, 0.139377,0.360623,0.360623,0.139377, maf-5-some-pop 1011 chr1 55839116 55839117 rs12758665 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3845.000000,1163.000000, 0.767772,0.232228, maf-5-some-pop 1011 chr1 55840328 55840329 rs12068546 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 1011 chr1 55840372 55840373 rs2057109 0 - G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 1011 chr1 55841734 55841735 rs2746683 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 261.000000,4747.000000,4747.000000,261.000000, 0.026058,0.473942,0.473942,0.026058, maf-5-some-pop 1011 chr1 55843809 55843810 rs2802877 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4748.000000,260.000000,260.000000,4748.000000, 0.474042,0.025958,0.025958,0.474042, maf-5-some-pop 1011 chr1 55846441 55846442 rs11206570 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 1011 chr1 55850190 55850191 rs6693431 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1704.000000,3304.000000, 0.340256,0.659744, maf-5-some-pop,maf-5-all-pops 1011 chr1 55860560 55860561 rs11206577 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1876.000000,3132.000000, 0.374601,0.625399, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55865473 55865474 rs11580406 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 A,G, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55865581 55865582 rs12089328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop 1011 chr1 55866587 55866588 rs1033551 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1933.000000,3075.000000,3075.000000,1933.000000, 0.192991,0.307009,0.307009,0.192991, maf-5-some-pop,maf-5-all-pops 1011 chr1 55866732 55866733 rs2746680 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 52.000000,4956.000000,4956.000000,52.000000, 0.005192,0.494808,0.494808,0.005192, maf-5-some-pop,genotype-conflict 1011 chr1 55870347 55870348 rs2179851 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 1466.000000,3542.000000,3542.000000,1466.000000, 0.146366,0.353634,0.353634,0.146366, maf-5-some-pop 1011 chr1 55884332 55884333 rs11206579 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2947.000000,2061.000000, 0.588458,0.411542, maf-5-some-pop 1011 chr1 55891798 55891799 rs11206580 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop,genotype-conflict 1011 chr1 55892470 55892471 rs17112051 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 1011 chr1 55902847 55902848 rs12091976 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 1011 chr1 55903442 55903443 rs7516169 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop,maf-5-all-pops 1011 chr1 55904302 55904303 rs12022663 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop,maf-5-all-pops 1011 chr1 55904826 55904827 rs12094871 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop 1011 chr1 55906838 55906839 rs12062130 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,genotype-conflict 1011 chr1 55907950 55907951 rs6588560 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3662.000000,1346.000000, 0.731230,0.268770, maf-5-some-pop,maf-5-all-pops 1011 chr1 55909029 55909030 rs17406602 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2731.000000,2277.000000, 0.545327,0.454673, maf-5-some-pop,maf-5-all-pops 1011 chr1 55909237 55909238 rs12128309 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 1011 chr1 55909304 55909305 rs10888920 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3175.000000,1833.000000, 0.633986,0.366014, maf-5-some-pop 1011 chr1 55909516 55909517 rs11206583 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2131.000000,2877.000000, 0.425519,0.574481, maf-5-some-pop,maf-5-all-pops 1011 chr1 55910620 55910621 rs4927236 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops 1011 chr1 55916768 55916769 rs12566719 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop 1011 chr1 55920289 55920290 rs4927240 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2968.000000,2040.000000, 0.592652,0.407348, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55920489 55920490 rs440336 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 847.000000,4161.000000,4161.000000,847.000000, 0.084565,0.415435,0.415435,0.084565, maf-5-some-pop 1011 chr1 55922984 55922985 rs397876 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 847.000000,4161.000000,4161.000000,847.000000, 0.084565,0.415435,0.415435,0.084565, maf-5-some-pop,genotype-conflict 1011 chr1 55923413 55923414 rs3974272 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4665.000000,343.000000, 0.931510,0.068490, maf-5-some-pop 1011 chr1 55923981 55923982 rs767242 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 618.000000,4390.000000, 0.123403,0.876597, maf-5-some-pop,maf-5-all-pops 1011 chr1 55929929 55929930 rs12068336 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55930449 55930450 rs1392134 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 1011 chr1 55931746 55931747 rs11206601 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 621.000000,4387.000000, 0.124002,0.875998, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55933037 55933038 rs17112084 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 1011 chr1 55933343 55933344 rs874664 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55933411 55933412 rs17112091 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 1011 chr1 55933490 55933491 rs904599 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4872.000000,136.000000,136.000000,4872.000000, 0.486422,0.013578,0.013578,0.486422, maf-5-some-pop 1011 chr1 55933758 55933759 rs904611 0 - G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1011 chr1 55934388 55934389 rs12568687 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1011 chr1 55934659 55934660 rs10888927 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop,maf-5-all-pops 1011 chr1 55935339 55935340 rs12075626 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4518.000000,490.000000, 0.902156,0.097843, maf-5-some-pop 1011 chr1 55938886 55938887 rs7532502 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop 1011 chr1 55939604 55939605 rs10493200 0 - G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 1011 chr1 55939993 55939994 rs1499678 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2029.000000,2979.000000,2979.000000,2029.000000, 0.202576,0.297424,0.297424,0.202576, maf-5-some-pop,maf-5-all-pops 1011 chr1 55940339 55940340 rs10493199 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4654.000000,354.000000,354.000000,4654.000000, 0.464657,0.035343,0.035343,0.464657, maf-5-some-pop,genotype-conflict 1011 chr1 55940368 55940369 rs1392141 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2978.000000,2030.000000,2030.000000,2978.000000, 0.297324,0.202676,0.202676,0.297324, maf-5-some-pop,maf-5-all-pops 1011 chr1 55944570 55944571 rs356088 0 - G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 1011 chr1 55945133 55945134 rs1980549 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4193.000000,815.000000, 0.837260,0.162740, maf-5-some-pop,genotype-conflict 1011 chr1 55951504 55951505 rs370904 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1141.000000,3867.000000,3867.000000,1141.000000, 0.113918,0.386082,0.386082,0.113918, maf-5-some-pop,maf-5-all-pops 1011 chr1 55952834 55952835 rs411611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3364.000000,1644.000000, 0.671725,0.328275, maf-5-some-pop,maf-5-all-pops 1011 chr1 55953289 55953290 rs2649629 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 414.000000,4594.000000,4594.000000,414.000000, 0.041334,0.458666,0.458666,0.041334, maf-5-some-pop 1011 chr1 55953403 55953404 rs12043386 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop 1011 chr1 55957271 55957272 rs380389 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4503.000000,505.000000, 0.899161,0.100839, maf-5-some-pop 1011 chr1 55959239 55959240 rs17112188 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop 1011 chr1 55963518 55963519 rs1780542 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 4324.000000,684.000000,684.000000,4324.000000, 0.431709,0.068291,0.068291,0.431709, maf-5-some-pop 1011 chr1 55963648 55963649 rs12563278 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4309.000000,699.000000, 0.860423,0.139577, maf-5-some-pop 1011 chr1 55965198 55965199 rs1740125 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1126.000000,3882.000000,3882.000000,1126.000000, 0.112420,0.387580,0.387580,0.112420, maf-5-some-pop,maf-5-all-pops 1011 chr1 55965412 55965413 rs1114737 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops 1011 chr1 55966831 55966832 rs17416166 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop 1012 chr1 55967765 55967766 rs356115 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop 1012 chr1 55969500 55969501 rs1740123 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 859.000000,4149.000000,4149.000000,859.000000, 0.085763,0.414237,0.414237,0.085763, maf-5-some-pop,genotype-conflict 1012 chr1 55970266 55970267 rs1780519 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2077.000000,2931.000000,2931.000000,2077.000000, 0.207368,0.292632,0.292632,0.207368, maf-5-some-pop,maf-5-all-pops 1012 chr1 55971057 55971058 rs17112228 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 1012 chr1 55971619 55971620 rs17112230 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 1012 chr1 55971758 55971759 rs356117 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop 1012 chr1 55971797 55971798 rs17112231 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop 1012 chr1 55972258 55972259 rs356118 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3835.000000,1173.000000, 0.765775,0.234225, maf-5-some-pop,maf-5-all-pops 1012 chr1 55972595 55972596 rs189593 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 885.000000,4123.000000, 0.176717,0.823283, maf-5-some-pop 1012 chr1 55976676 55976677 rs12406028 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,G, 3216.000000,1792.000000, 0.642173,0.357827, maf-5-some-pop,maf-5-all-pops 1012 chr1 55976705 55976706 rs1740122 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1053.000000,3955.000000,3955.000000,1053.000000, 0.105132,0.394868,0.394868,0.105132, maf-5-some-pop,genotype-conflict 1012 chr1 55980604 55980605 rs17112260 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop 1012 chr1 55981249 55981250 rs1740118 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 727.000000,4281.000000,4281.000000,727.000000, 0.072584,0.427416,0.427416,0.072584, maf-5-some-pop,genotype-conflict 1012 chr1 55981333 55981334 rs1780536 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1173.000000,3835.000000, 0.234225,0.765775, maf-5-some-pop,maf-5-all-pops 1012 chr1 55983524 55983525 rs1695960 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP, 2 A,G, 725.000000,4283.000000, 0.144768,0.855232, maf-5-some-pop 1012 chr1 55984308 55984309 rs2133555 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3378.000000,1630.000000, 0.674521,0.325479, maf-5-some-pop,maf-5-all-pops 1012 chr1 55984512 55984513 rs390415 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 849.000000,4159.000000,4159.000000,849.000000, 0.084764,0.415236,0.415236,0.084764, maf-5-some-pop 1012 chr1 55984932 55984933 rs12757934 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1843.000000,3165.000000, 0.368011,0.631989, maf-5-some-pop,maf-5-all-pops 1012 chr1 55985065 55985066 rs4927246 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,maf-5-all-pops 1012 chr1 55985147 55985148 rs4927247 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3174.000000,1834.000000, 0.633786,0.366214, maf-5-some-pop 1012 chr1 55987805 55987806 rs1780540 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1670.000000,3338.000000,3338.000000,1670.000000, 0.166733,0.333267,0.333267,0.166733, maf-5-some-pop,maf-5-all-pops 1012 chr1 55989413 55989414 rs904610 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2990.000000,2018.000000, 0.597045,0.402955, maf-5-some-pop 1012 chr1 55989645 55989646 rs356081 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 954.000000,4054.000000,4054.000000,954.000000, 0.095248,0.404752,0.404752,0.095248, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 55989689 55989690 rs1780538 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 51.000000,4957.000000,4957.000000,51.000000, 0.005092,0.494908,0.494908,0.005092, maf-5-some-pop 1012 chr1 55989749 55989750 rs1078877 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 816.000000,4192.000000, 0.162939,0.837061, maf-5-some-pop 1012 chr1 55990431 55990432 rs754138 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1915.000000,3093.000000, 0.382388,0.617612, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 55992754 55992755 rs356085 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1840.000000,3168.000000, 0.367412,0.632588, maf-5-some-pop,maf-5-all-pops 1012 chr1 55992809 55992810 rs1321120 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop 1012 chr1 55993009 55993010 rs1979827 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3009.000000,1999.000000, 0.600839,0.399161, maf-5-some-pop,maf-5-all-pops 1012 chr1 55993094 55993095 rs6588561 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3069.000000,1939.000000, 0.612819,0.387181, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 55995297 55995298 rs1995229 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1880.000000,3128.000000,3128.000000,1880.000000, 0.187700,0.312300,0.312300,0.187700, maf-5-some-pop,maf-5-all-pops 1012 chr1 55995342 55995343 rs181453 0 - G G C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 1012 chr1 55995468 55995469 rs7529841 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop 1012 chr1 55998338 55998339 rs356098 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1000.000000,4008.000000,4008.000000,1000.000000, 0.099840,0.400160,0.400160,0.099840, maf-5-some-pop,maf-5-all-pops 1012 chr1 55998404 55998405 rs2649627 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 678.000000,4330.000000,4330.000000,678.000000, 0.067692,0.432308,0.432308,0.067692, maf-5-some-pop,genotype-conflict 1012 chr1 55998434 55998435 rs168549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3460.000000,1548.000000, 0.690895,0.309105, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 55998635 55998636 rs356097 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4932.000000,76.000000,76.000000,4932.000000, 0.492412,0.007588,0.007588,0.492412, maf-5-some-pop 1012 chr1 55999066 55999067 rs356096 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3775.000000,1233.000000,1233.000000,3775.000000, 0.376897,0.123103,0.123103,0.376897, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56009469 56009470 rs378437 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 468.000000,4540.000000,4540.000000,468.000000, 0.046725,0.453275,0.453275,0.046725, maf-5-some-pop 1012 chr1 56010995 56010996 rs11206618 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3609.000000,1399.000000, 0.720647,0.279353, maf-5-some-pop,maf-5-all-pops 1012 chr1 56022183 56022184 rs1780516 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2948.000000,2060.000000,2060.000000,2948.000000, 0.294329,0.205671,0.205671,0.294329, maf-5-some-pop,genotype-conflict 1012 chr1 56022894 56022895 rs7542534 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1182.000000,3826.000000, 0.236022,0.763978, maf-5-some-pop,genotype-conflict 1012 chr1 56023332 56023333 rs9787362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3466.000000,1542.000000, 0.692093,0.307907, maf-5-some-pop,maf-5-all-pops 1012 chr1 56025427 56025428 rs10888932 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop,maf-5-all-pops 1012 chr1 56033891 56033892 rs10888934 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop,maf-5-all-pops 1012 chr1 56033931 56033932 rs7538836 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3826.000000,1182.000000, 0.763978,0.236022, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56039385 56039386 rs6680363 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 915.000000,4093.000000, 0.182708,0.817292, maf-5-some-pop 1012 chr1 56041719 56041720 rs4927254 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop 1012 chr1 56041824 56041825 rs1499659 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 1012 chr1 56041960 56041961 rs4927255 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2711.000000,2297.000000, 0.541334,0.458666, maf-5-some-pop,maf-5-all-pops 1012 chr1 56044295 56044296 rs12025338 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop 1012 chr1 56046319 56046320 rs4927257 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1824.000000,3184.000000, 0.364217,0.635783, maf-5-some-pop,maf-5-all-pops 1012 chr1 56046404 56046405 rs10493196 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 1427.000000,3581.000000,3581.000000,1427.000000, 0.142472,0.357528,0.357528,0.142472, maf-5-some-pop,genotype-conflict 1012 chr1 56047537 56047538 rs17410154 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3170.000000,1838.000000, 0.632987,0.367013, maf-5-some-pop,maf-5-all-pops 1012 chr1 56047602 56047603 rs7535298 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop 1012 chr1 56048894 56048895 rs1780528 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2819.000000,2189.000000,2189.000000,2819.000000, 0.281450,0.218550,0.218550,0.281450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56050015 56050016 rs1695945 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4129.000000,879.000000, 0.824481,0.175519, maf-5-some-pop,genotype-conflict 1012 chr1 56052307 56052308 rs1695946 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop,genotype-conflict 1012 chr1 56052857 56052858 rs7549716 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop 1012 chr1 56053041 56053042 rs10493195 0 - A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 4 A,C,G,T, 4608.000000,400.000000,400.000000,4608.000000, 0.460064,0.039936,0.039936,0.460064, maf-5-some-pop 1012 chr1 56055847 56055848 rs17416739 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop,genotype-conflict 1012 chr1 56057848 56057849 rs1499662 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3927.000000,1081.000000, 0.784145,0.215855, maf-5-some-pop,maf-5-all-pops 1012 chr1 56057989 56057990 rs1499663 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3013.000000,1995.000000, 0.601637,0.398363, maf-5-some-pop,maf-5-all-pops 1012 chr1 56058246 56058247 rs1155836 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3785.000000,1223.000000, 0.755791,0.244209, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56059053 56059054 rs12117758 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 1012 chr1 56059282 56059283 rs7548272 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4240.000000,768.000000, 0.846645,0.153355, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56059424 56059425 rs6588567 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop,maf-5-all-pops 1012 chr1 56059912 56059913 rs2047543 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56060061 56060062 rs1165456 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop 1012 chr1 56060950 56060951 rs10888935 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 2548.000000,2460.000000, 0.508786,0.491214, maf-5-some-pop,maf-5-all-pops,microattr-tpa 1012 chr1 56060980 56060981 rs11206628 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2462.000000,2546.000000, 0.491613,0.508387, maf-5-some-pop,maf-5-all-pops 1012 chr1 56061130 56061131 rs1913446 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2324.000000,2684.000000,2684.000000,2324.000000, 0.232029,0.267971,0.267971,0.232029, maf-5-some-pop,maf-5-all-pops 1012 chr1 56063732 56063733 rs12026971 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 1390.000000,3618.000000, 0.277556,0.722444, maf-5-some-pop 1012 chr1 56066405 56066406 rs769988 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop 1012 chr1 56066502 56066503 rs769989 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 436.000000,4572.000000,4572.000000,436.000000, 0.043530,0.456470,0.456470,0.043530, maf-5-some-pop 1012 chr1 56066551 56066552 rs1392128 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL, 2 C,T, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop,genotype-conflict 1012 chr1 56066713 56066714 rs1392129 0 + G G A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 3 A,G,T, 1253.000000,3705.000000,50.000000, 0.250200,0.739816,0.009984, maf-5-some-pop,genotype-conflict 1012 chr1 56068584 56068585 rs12125730 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 274.000000,4734.000000, 0.054713,0.945288, maf-5-some-pop 1012 chr1 56069366 56069367 rs11206633 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2486.000000,2522.000000, 0.496406,0.503594, maf-5-some-pop,maf-5-all-pops 1012 chr1 56069515 56069516 rs1499665 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3990.000000,1018.000000, 0.796725,0.203275, maf-5-some-pop,maf-5-all-pops 1012 chr1 56072329 56072330 rs12409439 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4027.000000,981.000000, 0.804113,0.195887, maf-5-some-pop,genotype-conflict 1012 chr1 56072553 56072554 rs1392130 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,C, 1507.000000,3501.000000, 0.300919,0.699081, maf-5-some-pop,genotype-conflict 1012 chr1 56073257 56073258 rs11206636 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 3500.000000,1508.000000, 0.698882,0.301118, maf-5-some-pop 1012 chr1 56077078 56077079 rs6694786 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop 1012 chr1 56077812 56077813 rs1499667 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 981.000000,4027.000000, 0.195887,0.804113, maf-5-some-pop,maf-5-all-pops 1012 chr1 56078352 56078353 rs12071564 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4576.000000,432.000000, 0.913738,0.086262, maf-5-some-pop 1012 chr1 56079738 56079739 rs1392132 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2000.000000,3008.000000, 0.399361,0.600639, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1012 chr1 56086703 56086704 rs769982 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3648.000000,1360.000000, 0.728435,0.271565, maf-5-some-pop,maf-5-all-pops 1012 chr1 56092174 56092175 rs769968 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 4883.000000,125.000000,125.000000,4883.000000, 0.487520,0.012480,0.012480,0.487520, maf-5-some-pop,genotype-conflict 1013 chr1 56101596 56101597 rs1392138 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 1013 chr1 56101821 56101822 rs1392140 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop 1013 chr1 56102009 56102010 rs17418151 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4411.000000,597.000000, 0.880791,0.119209, maf-5-some-pop 1013 chr1 56102039 56102040 rs1499676 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop 1013 chr1 56102891 56102892 rs6693323 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop,genotype-conflict 1013 chr1 56103658 56103659 rs1039296 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1325.000000,3683.000000, 0.264577,0.735423, maf-5-some-pop,maf-5-all-pops 1013 chr1 56104115 56104116 rs7416182 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SC_JCM, 2 C,T, 4962.000000,46.000000, 0.990815,0.009185, genotype-conflict 1013 chr1 56105783 56105784 rs17112560 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop 1013 chr1 56106599 56106600 rs11206648 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3510.000000,1498.000000, 0.700879,0.299121, maf-5-some-pop 1013 chr1 56106676 56106677 rs6669312 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 1013 chr1 56112773 56112774 rs10443215 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2183.000000,2825.000000, 0.435903,0.564097, maf-5-some-pop,maf-5-all-pops,microattr-tpa 1013 chr1 56113364 56113365 rs12124393 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3498.000000,1510.000000, 0.698482,0.301518, maf-5-some-pop,genotype-conflict 1013 chr1 56114109 56114110 rs12132839 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3725.000000,1283.000000, 0.743810,0.256190, maf-5-some-pop,genotype-conflict 1013 chr1 56115426 56115427 rs1828802 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4516.000000,492.000000,492.000000,4516.000000, 0.450879,0.049121,0.049121,0.450879, maf-5-some-pop 1013 chr1 56115797 56115798 rs769977 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2573.000000,2435.000000, 0.513778,0.486222, maf-5-some-pop 1013 chr1 56116231 56116232 rs1514135 0 - C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 1013 chr1 56118104 56118105 rs17112591 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 504.000000,4504.000000, 0.100639,0.899361, maf-5-some-pop,genotype-conflict 1013 chr1 56119503 56119504 rs12029835 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop 1013 chr1 56119746 56119747 rs7540786 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 1013 chr1 56120772 56120773 rs17418899 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop 1013 chr1 56120920 56120921 rs17112601 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 1013 chr1 56121179 56121180 rs6660332