Topologically associating domains (TADs) are contiguous segments of the genome where the genomic elements are in frequent contact with each other. Gene pairs that cooccupy a TAD are often functionally related and more likely to be coexpressed than random gene pairs, The TAD Map (bioRxiv preprint) provides a consensus estimate of the TAD layout for human and mouse, aggregated from multiple experimental datasets. It also provides tools to map any single-cell RNA-seq dataset to TAD signatures, where gene expression is mapped to TAD activation probabilities in each cell. It is described in the bioRxiv preprint, Deciphering the species-level structure of topologically associating domains by Rohit Singh and Bonnie Berger.
Human: | Scaffold in BED format (hg38) |
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Human: | Gene sets per TAD (csv) |
Mouse: | Scaffold in BED format (mm10) |
Mouse: | Gene sets per TAD (csv) |