This directory contains files of possible splice SNVs in Dig format

* grch37.spliceAI_CANONICAL.txt.gz: canonical splice sites based on genocode v24 basic transcripts

* grch37.spliceAI_CRYPTIC.txt.gz: cryptic splice sites with delta score >0.2

* grch37.spliceAI_CRYPTIC.noncoding.txt.gz: cryptic splice sites with delta score >0.2 not overlapping any coding sequence of gencode v24 basic transcripts.

* grch37.spliceAI_CRYPTIC.coding.txt.gz: cryptic splice sites with delta score >0.2 occuring within the coding sequence of the gencode canonical transcript.

If you want to read these files with column names:

$ python
>>> from DIGDriver.data_tools import mutation_tools
>>> sites = mutation_tools.read_mutation_file(<NAME_OF_FILE>)

The directory "with_delta_scores/" contains files that include two extra columns with the delta score and distance to nearest exon boundary for each SNV.