firstSequence=1
lastSequence=117
geneDatabase=/data2/rosetta/databases/mouse/humandata.seq
mouseGeneDatabase=/data2/rosetta/databases/mouse/mousedata.seq
createRepeatInformation=yes
createAlignmentRegions=yes
parseAligningRegions=no
parseAllSequence=yes
checkParses=yes
tupleTable=/cpp/main/bigclean6tuples.tupleTBL
minimumIntronLength=70
frameMethod=MinIndex
scoreMethod=Perk
normalMethod=None
fprobMethod=Normal
ParseAssumptions=2
IntronSignalsTable=/data/tables/IntronTuples/NO_TABLE
createFasta=no
