firstSequence=1
lastSequence=2
geneDatabase=/data2/rosetta/incoming/h14_igr1000.fa
mouseGeneDatabase=/data2/rosetta/incoming/cons.big200
createRepeatInformation=no
createAlignmentRegions=yes
parseAligningRegions=no
parseAllSequence=yes
checkParses=yes
tupleTable=/cpp/main/bigclean6tuples.tupleTBL
minimumIntronLength=70
frameMethod=MinIndex
scoreMethod=Perk
normalMethod=None
fprobMethod=Normal
ParseAssumptions=2
IntronSignalsTable=/data/tables/IntronTuples/NO_TABLE
createFasta=no
reverseComplementHuman=no
reverseComplementMouse=no
cutUnknownNucleotides=no

