REAPR: realignment for prediction of structural non-coding RNA

Results and Data

The REAPR results, including our high-confidence predictions, and supplemental data are available for download as one comprehensive zip archive or as single files as listed below:

Original Whole Genome Alignment

We provide the original whole genome alignment used in this study. We obtained the WGA from http://www.sanger.ac.uk/Users/td2/pecan-CAF1, following the citation of this URL in Rose et al.1 However, this mirror no longer works, nor could we find alternative working mirrors.

1 Rose, D., Hackermuller, J., Washietl, S., Reiche, K., Hertel, J., Findeiss, S., Stadler, P. F., and Prohaska, S. J., 2007. Computational RNomics of Drosophilids. BMC Genomics, 8:406.