Source file	MONGOOSE-style parse	COBRA-style parse (if available)
Acinetobacter Baumannii.xml	AB1	AB1c
Aspergillus niger iMA871.xml	AG1	AG1c
Aspergillus Nidulans.xls	AN1
Aspergillus nidulans.xml	AN1a	AN1c
Aspergillus oryzae.xml	AO1	AO1c
Arabidopsis Thaliana.xml	AT1	AT1c
a_thaliana_iRS1597-20110818.xml	AT2	AT2c
Acinetobacter Baylyi.xls	AY1
	AY2
	AY3
	AY4
Buchnera Aphidicola.xls	BA1
Burkholderia cenocepacia.xml	BC1	BC1c
Bacillus subtilis.xls	BS1
Bacillus Subtilis.xml	BS2	BS2c
Clostridium acetobutylicum.xls	CA1
Clostridium acetobutylicum Lee et al.xls	CA2
Clostridium beijerinckii.xml	CB1	CB1c
Corynebacterium glutamicum 1.xls	CG1
Corynebacterium glutamicum 2.xls	CG2
Cryptosporidium hominis.xls	CH1
Chlamydomonas reinhardtii iRC1080.xml	CR1	CR1c
Chromohalobacter salexigens iOA584.XLS	CS1
Clostridium Thermocellum.xml	CT1	CT1c
Dehalococcoides ethenogenes iAI549.xml	DE1	DE1c
Escherichia Coli Ijr904.xml	EC2	EC2c
Escherichia Coli iAF1260.xml	EC3	EC3c
Escherichia coli iCA1273.xls	EC4
Escherichia coli iCA1273.xml	EC4a	EC4c
Escherichia coli iJO1366.xml	EC5	EC5c
Escherichia Coli Textbook.xml	EC6	EC6c
Francisella tularensis iRS605.xls	FT1
Geobacter Metallireducens.xls	GM1
Geobacter Sulfurireducens.xls	GS1
Halobacterium Salinarum.xls	HB1
Haemophilus influenzae iCS400.xls	HI2
Helicobacter pylori iCS291.xls	HP1
Helicobacter Pylori iIT341.xml	HP2	HP2c
Homo Sapiens.xml	HS1	HS1c
Klebsiella pneumoniae.xml	KP1	KP1c
Ketogulonicigenium vulgare.xls	KV1
Lactococcus Lactis.xls	LL1
Lactococcus Lactis.xml	LL1a	LL1c
Leishmania Major.xml	LM1	LM1c
Lactobacillus Plantarum.xls	LP1
Methanosarcina acetivorans iVS941.XML	MA1	MA1c
Methanosarcina acetivorans iMB745.xls	MA2
Methanosarcina acetivorans iMB745.xml	MA2a	MA2c
Methanosarcina Barkeri.xml	MB1	MB1c
Mycoplasma Genitalium.xls	MG1
Mycoplasma genitalium iPS189.xml	MG1a	MG1c
Mus musculus 2005.xls	MM1
Mus musculus 2008.xml	MM2	MM2c
Mus Musculus.xls	MM3
Mus musculus iMM1415.xls	MM4
Mannheimia succiniproducens.xls	MS1
Mannheimia succiniciproducens1.xls	MS2
Mycobacterium Tuberculosis 1 Alternative.xls	MT1	MT1a
Mycobacterium Tuberculosis iNJ661.xml	MT1c
Mycobacterium Tuberculosis 2.xls	MT2
Mycobacterium tuberculosis iNJ661m.xml	MT3	MT3c
Neisseria Meningitidis.xls	NM1
Natronomonas Pharaonis.xml	NP1	NP1c
Pseudomonas Aeruginosa.xls	PA1
Plasmodium falciparum 1.xml	PF1	PF1c
Plasmodium falciparum 2.xml	PF2	PF2c
Polyphyromonas Gingivalis.xls	PG1
Pichia pastoris PpaMBEL1254.xml	PP1	PP1c
Pichia pastoris.XLS	PP2
Pichia pastoris.xml	PP3	PP3a
Pichia pastoris iLC915.xml	PP3c
Pseudomonas putida iJN746.xls	PS1
Pseudomonas putida iJP815.xls	PS2
Pseudomonas putida PpuMBEL1071.xml	PS3	PS3c
Pichia stipitis.xml	PT1	PT1c
Rhizobium Etli.xls	RE1
Rhodoferax Ferrireducens.xls	RF1
Rhodobacter sphaeroides.XLS	RS1
Rhodobacter sphaeroides.xml	RS1a	RS1c
Staphylococcus aureus iSB619.xls	SA1
Staphylococcus Aureus iSB619.xml	SA1a	SA1c
Staphylococcus aureus iMH551.xls	SA2
Staphylococcus Aureus.xls	SA3
Saccharomyces cerevisiae iFF708.xml	SC1	SC1c
Saccharomyces Cerevisiae iND75.xml	SC2	SC2c
Saccharomyces cerevisiae iLL672.xls	SC3
Saccharomyces cerevisiae iIN800.xml	SC4	SC4c
Saccharomyces cerevisiae iMH805.xml	SC5	SC5c
Saccharomyces Cerevisiae.xls	SC6
Streptococcus thermophilus LMG18311.xml	SH1	SH1c
Scheffersomyces stipitis.xls	SI1
Streptomyces coelicolor.xls	SM1
Streptomyces Coelicolor.xml	SM2	SM2c
Shewanella Oneidensis.xls	SO1
Saccharomyces pombe.xml	SP1	SP1c
Synechocystis.xls	SS1
Synechocystis iSyn669.xls	SS2
Synechocystis sp. PCC6803 iJN678.xls	SS3
Salmonella typhimurium iRR1083.xls	ST1
Salmonella Typhimurium.xls	ST2
Salmonella typhimurium STM_v1.0.xml	ST3	ST3c
Thermotoga Maritima.xml	TM1	TM1c
Vibrio vulnificus VvuMBEL943.xml	VV1	VV1c
Yersinia Pestis.xls	YP1
Zea mays iRS1563.xml	ZM1	ZM1c
Zymomonas mobilis iZM363.xls	ZY1
Zymomonas mobilis ZM4.xls	ZY2