(MHC_II_beta_NC-sup:D, (MHC_II_beta_NC-sup:C, (MHC_II_beta_NC-sup:B, MHC_II_beta_NC-sup:A)))
Core Residues: 148
Core RMSD: 0.410
Raw Score: 294.949
Reference structure: MHC_II_beta_NC-sup:D

MHC_II_beta_NC-sup:A   KKVITAFNEGLKGGGGSLVGGGSGGGGSRPW--------FLEYCKSECHFYNGTQR----    23 
MHC_II_beta_NC-sup:B   -------------------------------GDTRPR--FLQQDKYECH-------FFNG    20 
MHC_II_beta_NC-sup:C   -------------------------------------GSFVHQFQPFCY-----------    16 
MHC_II_beta_NC-sup:D   ---------------------------------------FVAHVESTCL-----------    12 

MHC_II_beta_NC-sup:A   -----------------VRLLVRYFYNLEENLRFDSDVGEFRAVTEL------------G    54 
MHC_II_beta_NC-sup:B   TER--------------VRFLHRDIYNQEEDLRFDSDVGEYRA----VTEL--------G    54 
MHC_II_beta_NC-sup:C   ---FTNGTQR-------IRLVIRYIYNREEYVRFDSDVGEYRA--------VTEL----G    54 
MHC_II_beta_NC-sup:D   ----------LDDAGTPKDFTYCISFNKDLLTCWDPEENKMAP------------CNSLA    50 

MHC_II_beta_NC-sup:A   RPDAENWNSQPE----FLEQKR--AEVDTV--CRHNYEIFDN-------FLVPRRVEPTV    99 
MHC_II_beta_NC-sup:B   RPDAEYWNSQ--KD--FLEDR-R-AAVDT-Y-CRHNYGVG--ES-----FTVQRRVEPKV    99 
MHC_II_beta_NC-sup:C   RPDAEYWNKQ------YLERT--RAELDT--VCRHNYEKT----ETP--TSLRRLEQPSV    99 
MHC_II_beta_NC-sup:D   NVLSQHLNQK----DTLMQRL---NGLQN---CATHTQPF-------WGSLTNRTRPPSV    93 

MHC_II_beta_NC-sup:A   TVYPTKTQPLEH------------------------HNLLVCSVSDFYPGNIEVRWFRN-   134 
MHC_II_beta_NC-sup:B   TVYP--------ARTQTLQH----------------HNLLVCSVNGFYPGSIEVRWFR-N   134 
MHC_II_beta_NC-sup:C   VISL----------------SRTEALNH--------HNTLVCSVTDFYPAKIKVRWFR--   133 
MHC_II_beta_NC-sup:D   QVAK------------------------TTPFNTREPVMLACYVWGFYPAEVTITWRK--   127 

MHC_II_beta_NC-sup:A   --GKEEKTGIVSTG---------------------LVRNGDWTFQTLVMLETVPQS---G   168 
MHC_II_beta_NC-sup:B   --SQEEK-------AGVVSTG--------------LIQNGDWTFQTLVMLETVPR-S--G   168 
MHC_II_beta_NC-sup:C   N-GQEET--------------VGVSSTQ-------LIRNGDWTFQVLVMLEMTPR--R-G   168 
MHC_II_beta_NC-sup:D   -NGKLVM---------------------HSSAHKTAQPNGDWTYQTLSHLALTPS---YG   162 

MHC_II_beta_NC-sup:A   EVYTCQVEHPSLTDPVTVEW-------   188 
MHC_II_beta_NC-sup:B   EVYTCQVEHPSVTSPLTVEWRA-----   190 
MHC_II_beta_NC-sup:C   EVYTCHVEHPSLTSPITVEW--RA---   190 
MHC_II_beta_NC-sup:D   DTYTCVVEHIGAPEPILRDW----TPG   185