(MHC_II_beta_NC-sup:D, (MHC_II_beta_NC-sup:C, (MHC_II_beta_NC-sup:B, MHC_II_beta_NC-sup:A)))
Core Residues: 174
Core RMSD: 2.201
Raw Score: 294.949
Reference structure: MHC_II_beta_NC-sup:D

MHC_II_beta_NC-sup:A   KKVITAFNEGLKGGGGSLVGGGSGGGGSRPW--------FLEYCKSECHFYNGTQRVRLL    27 
MHC_II_beta_NC-sup:B   -------------------------------GDTRPR--FLQQDKYECHFFNGTERVRFL    27 
MHC_II_beta_NC-sup:C   -------------------------------------GSFVHQFQPFCYFTNGTQRIRLV    27 
MHC_II_beta_NC-sup:D   ---------------------------------------FVAHVESTCLLDDAGTPKDFT    23 

MHC_II_beta_NC-sup:A   VRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPE----FLEQKR--AEVDTV--C    79 
MHC_II_beta_NC-sup:B   HRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQ--KD--FLEDR-R-AAVDT-Y-C    79 
MHC_II_beta_NC-sup:C   IRYIYNREEYVRFDSDVGEYRAVTELGRPDAEYWNKQ------YLERT--RAELDT--VC    79 
MHC_II_beta_NC-sup:D   YCISFNKDLLTCWDPEENKMAPCNSLANVLSQHLNQK----DTLMQRL---NGLQN---C    73 

MHC_II_beta_NC-sup:A   RHNYEIF-DNFLVPRRVEPTVTVYP-TKTQP-----------LEHHNLLVCSVSDFYPGN   126 
MHC_II_beta_NC-sup:B   RHNYGVG-ESFTVQRRVEPKVTVYPARTQ--TLQ--------H--HNLLVCSVNGFYPGS   126 
MHC_II_beta_NC-sup:C   RHNYEKTETPTSLRRLEQPSVVISL-SRT-----EALN----H--HNTLVCSVTDFYPAK   126 
MHC_II_beta_NC-sup:D   ATHTQPF-WGSLTNRTRPPSVQVAK-TTP---------FNTRE--PVMLACYVWGFYPAE   120 

MHC_II_beta_NC-sup:A   IEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTV   186 
MHC_II_beta_NC-sup:B   IEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTV   186 
MHC_II_beta_NC-sup:C   IKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVYTCHVEHPSLTSPITV   186 
MHC_II_beta_NC-sup:D   VTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILR   180 

MHC_II_beta_NC-sup:A   EW-------   188 
MHC_II_beta_NC-sup:B   EWRA-----   190 
MHC_II_beta_NC-sup:C   EW--RA---   190 
MHC_II_beta_NC-sup:D   DW----TPG   185