(MHC_II_alpha_NC-sup:D, (MHC_II_alpha_NC-sup:C, (MHC_II_alpha_NC-sup:B, MHC_II_alpha_NC-sup:A))) Core Residues: 144 Core RMSD: 0.481 Raw Score: 257.059 Reference structure: MHC_II_alpha_NC-sup:D MHC_II_alpha_NC-sup:A IKE------EHTII-QAEFYLLPDK------------RGEFMFDFDGDEIFHVDIEKSET 41 MHC_II_alpha_NC-sup:B ---E-----EHVII-QAEFYL----NPDQ--------SGEFMFDFDGDEIFHVDMAKKET 41 MHC_II_alpha_NC-sup:C ----IEA--DHVGSYGITVYQ--------SPGD----IGQYTFEFDGDELFYVDLDKKET 41 MHC_II_alpha_NC-sup:D -------LQNHTFL-HTVYCQ------------DGSPSVGLSEAYDEDQLFFFDFSQNTR 52 MHC_II_alpha_NC-sup:A IWRLEEFAKFASFEA---------------------------------QGALANIAVDKA 68 MHC_II_alpha_NC-sup:B VWRL-----------EEFGRFASFEA----------------------QGALANIAVDKA 68 MHC_II_alpha_NC-sup:C VWML----------------------PEFAQLRRFEP-----------QGGLQNIATGKH 68 MHC_II_alpha_NC-sup:D VPRL---------------------------------PEFADWAQEQGDAILFDKEFCEW 79 MHC_II_alpha_NC-sup:A NLDVMKERSNNTPDANVA---------------------------------PEVTVLSRS 95 MHC_II_alpha_NC-sup:B NLEIMTK-----------RSNYTPITNVP----------------------PEVTVLTNS 95 MHC_II_alpha_NC-sup:C NLEILTK----------------------RSNSTPATNEA-----------PQATVFPKS 95 MHC_II_alpha_NC-sup:D MIQQIPK---------------------------------LDGKIPVSRGFPIAEVFTLK 106 MHC_II_alpha_NC-sup:A PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEG---------VSETVF--LPRDDHL 144 MHC_II_alpha_NC-sup:B PVELREPNVLICFIDKFTPPVVNVTWLRNGKPV---TTG------VSETV-F-LPREDHL 144 MHC_II_alpha_NC-sup:C PVLLGQPNTLICFVDNIFPPVINITWLRNSKSV------TDG---VYETS--FFVNRDYS 144 MHC_II_alpha_NC-sup:D PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPV---------EGFGPTFV---SAVDGLS 154 MHC_II_alpha_NC-sup:A FRKFHYLTFLPSTDDFYDCEVDHWGLE------------EPLRKHWEFEE----- 182 MHC_II_alpha_NC-sup:B FRKFHYLPFLPSTEDVYDCRVEH----WGLD--------EPLLKHWEFD------ 181 MHC_II_alpha_NC-sup:C FHKLSYLTFIPSDDDIYDCKVEH--------WGLE----EPVLKHWEPE------ 181 MHC_II_alpha_NC-sup:D FQAFSYLNFTPEPSDIFSCIVTH------------EPDRYTAIAYWVPR-NALPS 196