(MHC_II_alpha_NC-sup:D, (MHC_II_alpha_NC-sup:C, (MHC_II_alpha_NC-sup:B, MHC_II_alpha_NC-sup:A)))
Core Residues: 174
Core RMSD: 1.786
Raw Score: 257.059
Reference structure: MHC_II_alpha_NC-sup:D

MHC_II_alpha_NC-sup:A   IKE------EHTII-QAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKF--    51 
MHC_II_alpha_NC-sup:B   ---E-----EHVII-QAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGR-F-    51 
MHC_II_alpha_NC-sup:C   ----IEA--DHVGSYGITVYQSPGDIGQYTFEFDGDELFYVDLDKKETVWMLPEFAQ--L    51 
MHC_II_alpha_NC-sup:D   -------LQNHTFL-HTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFAD---    61 

MHC_II_alpha_NC-sup:A   ASFEA-QGALANIAVDKANLDVMKERS----NNTP--DANVAPEVTVLSRSPVNLGEPNI   104 
MHC_II_alpha_NC-sup:B   ASFEA-QGALANIAVDKANLEIMTK--RS--NYTP--ITNVPPEVTVLTNSPVELREPNV   104 
MHC_II_alpha_NC-sup:C   RRFEP-QGGLQNIATGKHNLEILTK----RSNSTP--ATNEAPQATVFPKSPVLLGQPNT   104 
MHC_II_alpha_NC-sup:D   WAQEQGDAILFDKEFCEWMIQQIPK------LDGKIPVSRGFPIAEVFTLKPLEFGKPNT   115 

MHC_II_alpha_NC-sup:A   LICFIDKFSPPVVNVTWLRNGRPVTEGVSETVF--LPRDDHLFRKFHYLTFLPSTDDFYD   162 
MHC_II_alpha_NC-sup:B   LICFIDKFTPPVVNVTWLRNGKPVTTGVSETV-F-LPREDHLFRKFHYLPFLPSTEDVYD   162 
MHC_II_alpha_NC-sup:C   LICFVDNIFPPVINITWLRNSKSVTDGVYETS--FFVNRDYSFHKLSYLTFIPSDDDIYD   162 
MHC_II_alpha_NC-sup:D   LVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFV---SAVDGLSFQAFSYLNFTPEPSDIFS   172 

MHC_II_alpha_NC-sup:A   CEVDHWGLEEPLRKHWEFEE-----   182 
MHC_II_alpha_NC-sup:B   CRVEHWGLDEPLLKHWEFD------   181 
MHC_II_alpha_NC-sup:C   CKVEHWGLEEPVLKHWEPE------   181 
MHC_II_alpha_NC-sup:D   CIVTHEPDRYTAIAYWVPR-NALPS   196