((MHC_II_N-sup:I, (MHC_II_N-sup:J, (MHC_II_N-sup:L, MHC_II_N-sup:K))), (MHC_II_N-sup:M, (MHC_II_N-sup:H, ((MHC_II_N-sup:G, (MHC_II_N-sup:F, MHC_II_N-sup:E)), (MHC_II_N-sup:D, (MHC_II_N-sup:C, (MHC_II_N-sup:B, MHC_II_N-sup:A))))))) Core Residues: 40 Core RMSD: 0.872 Raw Score: 35.838 Reference structure: MHC_II_N-sup:L MHC_II_N-sup:A GDTRPRFLQQDKYECHFFNGTERVRFLHRDIY---------------------------- 32 MHC_II_N-sup:B --------------------------------GDTRPRFLEQVKHECHFFNGTERVRFLD 28 MHC_II_N-sup:C ------------------------------------------------------------ 5 MHC_II_N-sup:D ------------------------------------------------------------ 6 MHC_II_N-sup:E ------------------------------------------------------------ 5 MHC_II_N-sup:F ------------------------------------------------------------ 5 MHC_II_N-sup:G ------------------------------------------------------------ 5 MHC_II_N-sup:H ------------------------------------------------------------ 3 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J ------------------------------------------------------------ 1 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B RYFY-------------------------------------------------------- 32 MHC_II_N-sup:C ----PRFLEYSTSECHFFNGTERVRYLDRYFH---------------------------- 32 MHC_II_N-sup:D --------------------------------WFLEYCKSECHFYNGTQRVRLLVRYFY- 32 MHC_II_N-sup:E -----------------------------------------------------------R 5 MHC_II_N-sup:F ------------------------------------------------------------ 5 MHC_II_N-sup:G ------------------------------------------------------------ 5 MHC_II_N-sup:H ------------------------------------------------------------ 3 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J ------------------------------------------------------------ 1 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B ------------------------------------------------------------ 32 MHC_II_N-sup:C ------------------------------------------------------------ 32 MHC_II_N-sup:D ------------------------------------------------------------ 32 MHC_II_N-sup:E HFVHQFKGECYFTNGTQRIRLVTRYIY--------------------------------- 32 MHC_II_N-sup:F ---------------------------GSFVHQFQPFCYFTNGTQRIRLVIRYIY----- 32 MHC_II_N-sup:G -------------------------------------------------------RHFVV 9 MHC_II_N-sup:H ------------------------------------------------------------ 3 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J ------------------------------------------------------------ 1 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B ------------------------------------------------------------ 32 MHC_II_N-sup:C ------------------------------------------------------------ 32 MHC_II_N-sup:D ------------------------------------------------------------ 32 MHC_II_N-sup:E ------------------------------------------------------------ 32 MHC_II_N-sup:F ------------------------------------------------------------ 32 MHC_II_N-sup:G QFKGECYYTNGTQRIRLVTRYIY------------------------------------- 32 MHC_II_N-sup:H -----------------------FVAHVESTCLLDDAGTPKDFTYCISF----------- 28 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J -------------------------------------------------IEADHVGSYGI 10 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B ------------------------------------------------------------ 32 MHC_II_N-sup:C ------------------------------------------------------------ 32 MHC_II_N-sup:D ------------------------------------------------------------ 32 MHC_II_N-sup:E ------------------------------------------------------------ 32 MHC_II_N-sup:F ------------------------------------------------------------ 32 MHC_II_N-sup:G ------------------------------------------------------------ 32 MHC_II_N-sup:H ------------------------------------------------------------ 28 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J TVYQSPGDIGQYTFEF-------------------------------------------- 26 MHC_II_N-sup:K ----------------IKEEHTIIQAEFYLLPDKRGEFMFDF------------------ 26 MHC_II_N-sup:L ------------------------------------------EEHVIIQAEFYLNPDQSG 20 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A -------------------------------NQEEDLRFDSDVGEYRAVTELGRPDAEYW 61 MHC_II_N-sup:B -------------------------------HQEEYVRFDSDVGEYRAVTELG------- 54 MHC_II_N-sup:C -------------------------------NQEENVRFDSDVGEFRAVTELG------- 54 MHC_II_N-sup:D -------------------------------NLEENLRFDSDVGEFRAVTELG------- 54 MHC_II_N-sup:E -------------------------------NREEYLRFDSDVGEYRAVTELG------- 54 MHC_II_N-sup:F -------------------------------NREEYVRFDSDVGEYRAVTELG------- 54 MHC_II_N-sup:G -------------------------------NREEYVRYDSDVGEYRAVTELG------- 54 MHC_II_N-sup:H -------------------------------NKDLLTCWDPEENKMAPCNSLA------- 50 MHC_II_N-sup:I -------------------------------DGDELFYVDLDKKKTVWRLPEF------- 48 MHC_II_N-sup:J -------------------------------DGDELFYVDLDKKETVWMLPEF------- 48 MHC_II_N-sup:K -------------------------------DGDEIFHVDIEKSETIWRLEEF------- 48 MHC_II_N-sup:L EFMFDF-------------------------DGDEIFHVDMAKKETVWRLEEF------- 48 MHC_II_N-sup:M ------LQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEF------- 59 MHC_II_N-sup:A NSQKDF------------------------------------------------------ 67 MHC_II_N-sup:B ------RPDAEYWNSQKDL----------------------------------------- 67 MHC_II_N-sup:C -------------------RPDAEYWNSQKDL---------------------------- 67 MHC_II_N-sup:D --------------------------------RPDAENWNSQPEF--------------- 67 MHC_II_N-sup:E ---------------------------------------------RHSAEYYNKQY---- 66 MHC_II_N-sup:F --------------------------------------------------------RPDA 58 MHC_II_N-sup:G ------------------------------------------------------------ 54 MHC_II_N-sup:H ------------------------------------------------------------ 50 MHC_II_N-sup:I ------------------------------------------------------------ 48 MHC_II_N-sup:J ------------------------------------------------------------ 48 MHC_II_N-sup:K ------------------------------------------------------------ 48 MHC_II_N-sup:L ------------------------------------------------------------ 48 MHC_II_N-sup:M ------------------------------------------------------------ 59 MHC_II_N-sup:A ------------------------------------------------------------ 67 MHC_II_N-sup:B ------------------------------------------------------------ 67 MHC_II_N-sup:C ------------------------------------------------------------ 67 MHC_II_N-sup:D ------------------------------------------------------------ 67 MHC_II_N-sup:E ------------------------------------------------------------ 66 MHC_II_N-sup:F EYWNKQY----------------------------------------------------- 67 MHC_II_N-sup:G -------RPDAEYWNSQPEI---------------------------------------- 67 MHC_II_N-sup:H --------------------NVLSQHLNQKDT---------------------------- 62 MHC_II_N-sup:I --------------------------------GQLILFE--------------------- 55 MHC_II_N-sup:J ---------------------------------------AQLRRFE-------------- 55 MHC_II_N-sup:K ----------------------------------------------AKFASFE------- 55 MHC_II_N-sup:L -----------------------------------------------------GRFASFE 55 MHC_II_N-sup:M ------------------------------------------------------------ 59 MHC_II_N-sup:A -------LEDRRAAVD-----------TYCRHNYGVGESFTVQ----------------- 92 MHC_II_N-sup:B -------LEQKRAAV-D----------TYCRHNYGVG------ESFTVQ----------- 92 MHC_II_N-sup:C -------LEQKRGRV--D---------NYCRHNYGVV------------ESFTVQ----- 92 MHC_II_N-sup:D -------LEQKRAEV---D--------TVCRHNYEIF------------------DN--- 88 MHC_II_N-sup:E -------LERTRAEL----D-------TACRHNYEET--------------------EVP 89 MHC_II_N-sup:F -------LERTRAEL-----D------TVCRHNYEKT----------------------- 85 MHC_II_N-sup:G -------LERTRAEV------D-----TACRHNYEGP----------------------- 86 MHC_II_N-sup:H -------LMQRLNGL------------QNCATHTQPF----------------------- 80 MHC_II_N-sup:I -------PQGGLQNI-------A----AEKHNLGILT----------------------- 74 MHC_II_N-sup:J -------PQGGLQNI--------A---TGKHNLEILT----------------------- 74 MHC_II_N-sup:K -------AQGALANI---------A--VDKANLDVMK----------------------- 74 MHC_II_N-sup:L -------AQGALANI----------A-VDKANLEIMT----------------------- 74 MHC_II_N-sup:M ADWAQEQGDAILFDK-----------EFCEWMIQQIP----------------------- 85 MHC_II_N-sup:A ------------------------------------------------------------ 92 MHC_II_N-sup:B ------------------------------------------------------------ 92 MHC_II_N-sup:C ------------------------------------------------------------ 92 MHC_II_N-sup:D ------------------------------------------------------------ 88 MHC_II_N-sup:E TSLR-------------------------------------------------------- 93 MHC_II_N-sup:F ----ETPTSLR------------------------------------------------- 92 MHC_II_N-sup:G -----------ETSTSLR------------------------------------------ 93 MHC_II_N-sup:H ------------------WGSLTNR----------------------------------- 87 MHC_II_N-sup:I -------------------------KRSNFTPA--------------------------- 82 MHC_II_N-sup:J ---------------------------------KRSNSTP-------------------- 81 MHC_II_N-sup:K ----------------------------------------ERSNNTPD------------ 82 MHC_II_N-sup:L ------------------------------------------------KRSNYTP----- 81 MHC_II_N-sup:M -------------------------------------------------------KLDGK 90 MHC_II_N-sup:A --- 92 MHC_II_N-sup:B --- 92 MHC_II_N-sup:C --- 92 MHC_II_N-sup:D --- 88 MHC_II_N-sup:E --- 93 MHC_II_N-sup:F --- 92 MHC_II_N-sup:G --- 93 MHC_II_N-sup:H --- 87 MHC_II_N-sup:I --- 82 MHC_II_N-sup:J --- 81 MHC_II_N-sup:K --- 82 MHC_II_N-sup:L --- 81 MHC_II_N-sup:M IPV 93