((MHC_II_N-sup:I, (MHC_II_N-sup:J, (MHC_II_N-sup:L, MHC_II_N-sup:K))), (MHC_II_N-sup:M, (MHC_II_N-sup:H, ((MHC_II_N-sup:G, (MHC_II_N-sup:F, MHC_II_N-sup:E)), (MHC_II_N-sup:D, (MHC_II_N-sup:C, (MHC_II_N-sup:B, MHC_II_N-sup:A))))))) Core Residues: 49 Core RMSD: 2.361 Raw Score: 35.838 Reference structure: MHC_II_N-sup:L MHC_II_N-sup:A GDTRPRFLQQDKYECHFFNGTERVRFLHRDIY---------------------------- 32 MHC_II_N-sup:B --------------------------------GDTRPRFLEQVKHECHFFNGTERVRFLD 28 MHC_II_N-sup:C ------------------------------------------------------------ 5 MHC_II_N-sup:D ------------------------------------------------------------ 6 MHC_II_N-sup:E ------------------------------------------------------------ 5 MHC_II_N-sup:F ------------------------------------------------------------ 5 MHC_II_N-sup:G ------------------------------------------------------------ 5 MHC_II_N-sup:H ------------------------------------------------------------ 3 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J ------------------------------------------------------------ 1 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B RYFY-------------------------------------------------------- 32 MHC_II_N-sup:C ----PRFLEYSTSECHFFNGTERVRYLDRYFH---------------------------- 32 MHC_II_N-sup:D --------------------------------WFLEYCKSECHFYNGTQRVRLLVRYFY- 32 MHC_II_N-sup:E -----------------------------------------------------------R 5 MHC_II_N-sup:F ------------------------------------------------------------ 5 MHC_II_N-sup:G ------------------------------------------------------------ 5 MHC_II_N-sup:H ------------------------------------------------------------ 3 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J ------------------------------------------------------------ 1 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B ------------------------------------------------------------ 32 MHC_II_N-sup:C ------------------------------------------------------------ 32 MHC_II_N-sup:D ------------------------------------------------------------ 32 MHC_II_N-sup:E HFVHQFKGECYFTNGTQRIRLVTRYIY--------------------------------- 32 MHC_II_N-sup:F ---------------------------GSFVHQFQPFCYFTNGTQRIRLVIRYIY----- 32 MHC_II_N-sup:G -------------------------------------------------------RHFVV 9 MHC_II_N-sup:H ------------------------------------------------------------ 3 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J ------------------------------------------------------------ 1 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B ------------------------------------------------------------ 32 MHC_II_N-sup:C ------------------------------------------------------------ 32 MHC_II_N-sup:D ------------------------------------------------------------ 32 MHC_II_N-sup:E ------------------------------------------------------------ 32 MHC_II_N-sup:F ------------------------------------------------------------ 32 MHC_II_N-sup:G QFKGECYYTNGTQRIRLVTRYIY------------------------------------- 32 MHC_II_N-sup:H -----------------------FVAHVESTCLLDDAGTPKDFTYCISF----------- 28 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J -------------------------------------------------IEADHVGSYGI 10 MHC_II_N-sup:K ------------------------------------------------------------ 1 MHC_II_N-sup:L ------------------------------------------------------------ 3 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A ------------------------------------------------------------ 32 MHC_II_N-sup:B ------------------------------------------------------------ 32 MHC_II_N-sup:C ------------------------------------------------------------ 32 MHC_II_N-sup:D ------------------------------------------------------------ 32 MHC_II_N-sup:E ------------------------------------------------------------ 32 MHC_II_N-sup:F ------------------------------------------------------------ 32 MHC_II_N-sup:G ------------------------------------------------------------ 32 MHC_II_N-sup:H ------------------------------------------------------------ 28 MHC_II_N-sup:I ------------------------------------------------------------ 27 MHC_II_N-sup:J TVYQSPGDIGQYTFEF-------------------------------------------- 26 MHC_II_N-sup:K ----------------IKEEHTIIQAEFYLLPDKRGEFMFDF------------------ 26 MHC_II_N-sup:L ------------------------------------------EEHVIIQAEFYLNPDQSG 20 MHC_II_N-sup:M ------------------------------------------------------------ 13 MHC_II_N-sup:A -------------------------------NQEEDLRFDSDVGEYRAVTELGRPDA--- 58 MHC_II_N-sup:B -------------------------------HQEEYVRFDSDVGEYRAVTELGRPD-A-- 58 MHC_II_N-sup:C -------------------------------NQEENVRFDSDVGEFRAVTELGRPD--A- 58 MHC_II_N-sup:D -------------------------------NLEENLRFDSDVGEFRAVTELGRPD---A 58 MHC_II_N-sup:E -------------------------------NREEYLRFDSDVGEYRAVTELGRHS---- 57 MHC_II_N-sup:F -------------------------------NREEYVRFDSDVGEYRAVTELGRPD---- 57 MHC_II_N-sup:G -------------------------------NREEYVRYDSDVGEYRAVTELGRPD---- 57 MHC_II_N-sup:H -------------------------------NKDLLTCWDPEENKMAPCNSLANVL---- 53 MHC_II_N-sup:I -------------------------------DGDELFYVDLDKKKTVWRLPEFGQL---- 51 MHC_II_N-sup:J -------------------------------DGDELFYVDLDKKETVWMLPEFAQL---- 51 MHC_II_N-sup:K -------------------------------DGDEIFHVDIEKSETIWRLEEFAKF---- 51 MHC_II_N-sup:L EFMFDF-------------------------DGDEIFHVDMAKKETVWRLEEFGRF---- 51 MHC_II_N-sup:M ------LQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADW---- 62 MHC_II_N-sup:A ----EYWNSQKDF------------------------------LEDRRAAVD-------- 76 MHC_II_N-sup:B ----EYWN-----SQKDL-------------------------LEQKRAAV-D------- 76 MHC_II_N-sup:C ----EYWN----------SQKDL--------------------LEQKRGRV--D------ 76 MHC_II_N-sup:D ----ENWN---------------SQPEF---------------LEQKRAEV---D----- 76 MHC_II_N-sup:E A---EYYN--------------------KQY------------LERTRAEL----D---- 76 MHC_II_N-sup:F -A--EYWN-----------------------KQY---------LERTRAEL-----D--- 76 MHC_II_N-sup:G --A-EYWN--------------------------SQPEI----LERTRAEV------D-- 76 MHC_II_N-sup:H ---SQHLN-------------------------------QKDTLMQRLNGL--------- 70 MHC_II_N-sup:I ----ILFE-----------------------------------PQGGLQNI-------A- 64 MHC_II_N-sup:J ----RRFE-----------------------------------PQGGLQNI--------A 64 MHC_II_N-sup:K ----ASFE-----------------------------------AQGALANI--------- 63 MHC_II_N-sup:L ----ASFE-----------------------------------AQGALANI--------- 63 MHC_II_N-sup:M ----AQEQ-----------------------------------GDAILFDK--------- 74 MHC_II_N-sup:A ---TYCRHNYGVGE-------------SFTVQ---------------------------- 92 MHC_II_N-sup:B ---TYCRHNYGVG-E------------SF---TVQ------------------------- 92 MHC_II_N-sup:C ---NYCRHNYGVV--E-----------SF------TVQ---------------------- 92 MHC_II_N-sup:D ---TVCRHNYEIF--------------DN------------------------------- 88 MHC_II_N-sup:E ---TACRHNYEET---EV---------PT---------SLR------------------- 93 MHC_II_N-sup:F ---TVCRHNYEKT-----ET-------PT------------SLR---------------- 92 MHC_II_N-sup:G ---TACRHNYEGP-------ET-----ST---------------SLR------------- 93 MHC_II_N-sup:H ---QNCATHTQPF---------W----GS------------------LTNR--------- 87 MHC_II_N-sup:I ---AEKHNLGILT----------K---RS----------------------NFTPA---- 82 MHC_II_N-sup:J ---TGKHNLEILT-----------K--RS---------------------------NSTP 81 MHC_II_N-sup:K A--VDKANLDVMK------------E-RS------------------------------- 77 MHC_II_N-sup:L -A-VDKANLEIMT-------------KRS------------------------------- 77 MHC_II_N-sup:M --EFCEWMIQQIP--------------KL------------------------------- 87 MHC_II_N-sup:A --------------- 92 MHC_II_N-sup:B --------------- 92 MHC_II_N-sup:C --------------- 92 MHC_II_N-sup:D --------------- 88 MHC_II_N-sup:E --------------- 93 MHC_II_N-sup:F --------------- 92 MHC_II_N-sup:G --------------- 93 MHC_II_N-sup:H --------------- 87 MHC_II_N-sup:I --------------- 82 MHC_II_N-sup:J --------------- 81 MHC_II_N-sup:K NNTPD---------- 82 MHC_II_N-sup:L -----NYTP------ 81 MHC_II_N-sup:M ---------DGKIPV 93