(Cys-protease-3C-sup:A, (Cys-protease-3C-sup:C, Cys-protease-3C-sup:B))
Core Residues: 135
Core RMSD: 0.617
Raw Score: 212.532
Reference structure: Cys-protease-3C-sup:A

Cys-protease-3C-sup:A   STL--------EIAGLVRKN------LVQFGVGEKNGSVRWV----------MNALGVKD    36 
Cys-protease-3C-sup:B   ---GPGF----DYAVAMA--KRN---IVTAT-----------TSKGE-----FTMLGVHD    32 
Cys-protease-3C-sup:C   -------GPEEEFGMSLI-----KHNSCVIT----------------TENGKFTGLGVYD    32 

Cys-protease-3C-sup:A   DWLLVPSHAYKFEKDYEMME----------FYFNRGGTYYSISAGNV----VIQSLDVGA    82 
Cys-protease-3C-sup:B   NVAILPT-------------HASPG-----ESIVIDGKEVE------IL--DAKALE---    63 
Cys-protease-3C-sup:C   RFVVVPT------------------HADPGKEIQVDGITTK--------VIDSYDLY---    63 

Cys-protease-3C-sup:A   QDV------------------VLMKVP--TIPKFRDIT--QHFIKKGDVPRALNRL----   116 
Cys-protease-3C-sup:B   ---DQAGTNLEI---------TIITL-K-RNEKFRDI-R-PHIPTQ----------ITET    97 
Cys-protease-3C-sup:C   ------------NKNGIKLEITVLKL--DRNEKFRDI--RRYIPNN--------------    93 

Cys-protease-3C-sup:A   --------ATLVTTVNG----------TPMLISEGPLKMEEKATYVHKKNDGTTVDLTVD   158 
Cys-protease-3C-sup:B   ND------GVLIV----NTSKY-----PNMYVPVGAVTEQGYLNLG---------GRQTA   133 
Cys-protease-3C-sup:C   --EDDYPNCNLAL---------LANQPEPTIINVGDVVSYGNILLS---------GNQTA   133 

Cys-protease-3C-sup:A   QAWRGKGEGLPGMCGGALVSSNQSIQN----AILGIHVAGGNSILVAKLV--TQEMFQNI   212 
Cys-protease-3C-sup:B   RTLMYNFPTRAGQCGGVITC-------TG--KVIGMHVGGNGSHGFAAA-L-KRSYF---   179 
Cys-protease-3C-sup:C   RMLKYSYPTKSGYCGGVLYK---------IGQVLGIHVGGNGRDGFSAM--LLRSYF---   179 

Cys-protease-3C-sup:A   D--   213 
Cys-protease-3C-sup:B   -T-   180 
Cys-protease-3C-sup:C   --T   180