((ATP-synt-sup:D, ATP-synt-sup:B), (ATP-synt-sup:C, ATP-synt-sup:A))
Core Residues: 390
Core RMSD: 0.596
Raw Score: 682.862
Reference structure: ATP-synt-sup:D

ATP-synt-sup:A   SAAPKAGT------------------------ATGQIVAVIGAVVDVQFDEGL-------    29 
ATP-synt-sup:B   --------SSILEERIGADTSVDLE-------ETGRVLSIGDGIARVHG----LRN----    46 
ATP-synt-sup:C   -------------------------M------TRGRVIQVMGPVVDVKF-------ENGH    22 
ATP-synt-sup:D   --------------------------SQIQVSDVGTVIQVGDGIARAHG-----------    43 

ATP-synt-sup:A   ----PPILNALEVQGRESR----------------LVLEVAQHLGES-TVRTIAMDGTEG    68 
ATP-synt-sup:B   ----VQAEEMVEFS-----SG--------------LKGMSLNLEPD--NVGVVVFGNDK-    80 
ATP-synt-sup:C   L---PAIYNALKIQ-------HKARNENEVDID--LTLEVALHLGD-DTVRTIAMASTD-    68 
ATP-synt-sup:D   -LDNVMSGEAVEFA-------------------NAVMGMALNLEEN--NVGIVILGPYT-    80 

ATP-synt-sup:A   ---LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTK----------QFAP   115 
ATP-synt-sup:B   L--IKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPV---GSK-------IRRR   128 
ATP-synt-sup:C   -G-LIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDI------PADA---RRDP   117 
ATP-synt-sup:D   --GIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPV----------ETTETRP   128 

ATP-synt-sup:A   IHAEAPE---FIEMSVEQE---------ILVTGIKVVDLLAPYAKGGKIGLFGG---AGV   160 
ATP-synt-sup:B   VGLKAP-G--IIPRIS---VRE------PMQTGIKAVDSLVPIGRGQRELIIG-D--RQT   173 
ATP-synt-sup:C   IHRPAP--K-FEELAT------EVE---ILETGIKVVDLLAPYIKGGKIGLFG--G-AGV   162 
ATP-synt-sup:D   IESRAP---GVMDRRS---------VHEPLQTGIKAIDALVPIGRGQRELIIG---DRQT   173 

ATP-synt-sup:A   GKTVLIMELINNV-AKAHG--------GYSVFAGVGERTREGNDLYHEMIESGVINLKDA   211 
ATP-synt-sup:B   GKTSIAIDTIIN--QKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA------   225 
ATP-synt-sup:C   GKTVLIQELIHN-IAQEHG--------GISVFAGVGERTREGNDLYHEMKDSGV------   207 
ATP-synt-sup:D   GKTSVAIDTIIN--QKDQN--------MICIYVAIGQKESTVATVVETLAKHGA------   217 

ATP-synt-sup:A   TS------KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG-------QDVLLFIDNI   258 
ATP-synt-sup:B   --MK----YTIVVSATASDAAPLQYLAPYSGCSMGEYFRD---NG-----KHALIIYDDL   271 
ATP-synt-sup:C   ----IS--KTAMVFGQMNEPPGARMRVALTGLTMAEYFRD-----EQG--QDGLLFIDNI   254 
ATP-synt-sup:D   ------PDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMI--------MGKHVLVVIDDL   263 

ATP-synt-sup:A   FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKG--------------SI   304 
ATP-synt-sup:B   SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN--DSFGGG--------SL   321 
ATP-synt-sup:C   FRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTA--------KG------SI   300 
ATP-synt-sup:D   SKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLS----------DAKGGGSL   313 

ATP-synt-sup:A   TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI--   362 
ATP-synt-sup:B   TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR------VG   375 
ATP-synt-sup:C   TSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSR--------   352 
ATP-synt-sup:D   TALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSR--------   365 

ATP-synt-sup:A   --------------VGSEHYDVARGVQKILQDYKSLQDIIAILGMDEL------------   396 
ATP-synt-sup:B   SAA-----------QTRAMKQVAGTMKLELAQYREV------------AAFAQFGSDL--   410 
ATP-synt-sup:C   ---ALAPEI-----VGEEHYQVARKVQQTLERYKEL----------------------QD   382 
ATP-synt-sup:D   ---------VGGAAQIKAMKKVAGTLRLDLAAYREL------------------------   392 

ATP-synt-sup:A   -----------------SEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGK---------   430 
ATP-synt-sup:B   -----------------DAATQQLLSRGVRLTELLKQGQY-----------S--------   434 
ATP-synt-sup:C   IIAILGMDEL-------SDEDKLVVHRARRIQFFLSQNFH------------VAEQFTGQ   423 
ATP-synt-sup:D   ----------EFAQFSDDKATQANVARGARTVEVLKQDLH--------------------   425 

ATP-synt-sup:A   ----LVPLKETIKGFQQILAGDYDHLPEQAFYMVGPIE----------------------   464 
ATP-synt-sup:B   ----PMAIEEQVAVIYAGVRGYLDKLEPS---------KITKFESAFLSHVVSQHQSLLG   481 
ATP-synt-sup:C   PGS-YVPVKETVRGFKEILEGKYDHLPED-------------------------------   451 
ATP-synt-sup:D   ---QPIPVEKQVLIIYALTRGFLDDIPVE-------------------------------   451 

ATP-synt-sup:A   ------------------------------------------------------------   464 
ATP-synt-sup:B   NIRTDGKISEQSDAKLKEIVTN--------------------------------------   503 
ATP-synt-sup:C   ----------------------RFRLVGRIE-----------------------------   460 
ATP-synt-sup:D   -------------------------------DVRRFEKEFYLWLDQNGQHLLEHIRTTKD   480 

ATP-synt-sup:A   ---------------EAVAKADKLAEEH---------   477 
ATP-synt-sup:B   ---------------FLAGF--------EP-------   510 
ATP-synt-sup:C   ---------------EVVEK----------AKAMG--   470 
ATP-synt-sup:D   LPNEDDLNQAIEAFKKTFVV---------------SQ   502