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	Standard Unbent Alignments						Bent Alignments
Name	Core size	Core RMSD	Output Files				Core size	Core RMSD	Output Files
AAA	196	3.526	alignment	fasta	pdb	script	147	0.721	alignment	fasta	pdb	script
aabp	216	4.532	alignment	fasta	pdb	script	200	0.544	alignment	fasta	pdb	script
aadh	325	2.663	alignment	fasta	pdb	script	273	0.452	alignment	fasta	pdb	script
aat	348	2.575	alignment	fasta	pdb	script	267	0.539	alignment	fasta	pdb	script
ABC_tran	181	3.341	alignment	fasta	pdb	script	128	0.731	alignment	fasta	pdb	script
ace	445	2.354	alignment	fasta	pdb	script	328	0.379	alignment	fasta	pdb	script
Acetyltransf	106	2.652	alignment	fasta	pdb	script	74	0.550	alignment	fasta	pdb	script
acid_phosphat	296	3.313	alignment	fasta	pdb	script	223	0.611	alignment	fasta	pdb	script
ACPS	79	2.695	alignment	fasta	pdb	script	61	0.640	alignment	fasta	pdb	script
actin	288	2.464	alignment	fasta	pdb	script	223	0.605	alignment	fasta	pdb	script
adeno_fiber	176	1.694	alignment	fasta	pdb	script	151	0.384	alignment	fasta	pdb	script
Adenylsucc_synt	420	1.237	alignment	fasta	pdb	script	403	0.392	alignment	fasta	pdb	script
ADF	131	2.037	alignment	fasta	pdb	script	105	0.594	alignment	fasta	pdb	script
adh	366	1.131	alignment	fasta	pdb	script	345	0.311	alignment	fasta	pdb	script
adk	150	2.470	alignment	fasta	pdb	script	107	0.437	alignment	fasta	pdb	script
AhpC-TSA	157	1.789	alignment	fasta	pdb	script	132	0.431	alignment	fasta	pdb	script
ALBUMIN	173	3.954	alignment	fasta	pdb	script	143	0.698	alignment	fasta	pdb	script
Ald_Xan_dh_1	145	1.457	alignment	fasta	pdb	script	131	0.351	alignment	fasta	pdb	script
Ald_Xan_dh_2	669	1.998	alignment	fasta	pdb	script	579	0.550	alignment	fasta	pdb	script
aldedh	421	1.942	alignment	fasta	pdb	script	393	0.492	alignment	fasta	pdb	script
aldose	337	0.941	alignment	fasta	pdb	script	326	0.226	alignment	fasta	pdb	script
aldosered	257	1.637	alignment	fasta	pdb	script	229	0.322	alignment	fasta	pdb	script
alpha-amylase	251	2.444	alignment	fasta	pdb	script	178	0.629	alignment	fasta	pdb	script
alpha-amylase_C	49	2.398	alignment	fasta	pdb	script	28	0.780	alignment	fasta	pdb	script
alpha-amylase_NC	298	2.618	alignment	fasta	pdb	script	202	0.599	alignment	fasta	pdb	script
ANK	120	1.788	alignment	fasta	pdb	script	109	0.396	alignment	fasta	pdb	script
annexin	311	1.747	alignment	fasta	pdb	script	298	0.294	alignment	fasta	pdb	script
Antifreeze	64	1.200	alignment	fasta	pdb	script	61	0.387	alignment	fasta	pdb	script
AP_endonuc_2	227	3.004	alignment	fasta	pdb	script	173	0.737	alignment	fasta	pdb	script
apbact	231	2.362	alignment	fasta	pdb	script	172	0.542	alignment	fasta	pdb	script
ARM	379	3.666	alignment	fasta	pdb	script	334	0.354	alignment	fasta	pdb	script
asp	299	1.944	alignment	fasta	pdb	script	245	0.545	alignment	fasta	pdb	script
Asp_Glu_race_D	89	3.464	alignment	fasta	pdb	script	62	0.732	alignment	fasta	pdb	script
asprs	388	2.417	alignment	fasta	pdb	script	319	0.490	alignment	fasta	pdb	script
ATP-gua_Ptrans	334	2.349	alignment	fasta	pdb	script	316	0.450	alignment	fasta	pdb	script
ATP-synt	427	3.062	alignment	fasta	pdb	script	390	0.596	alignment	fasta	pdb	script
az	76	2.040	alignment	fasta	pdb	script	54	0.574	alignment	fasta	pdb	script
B	40	1.672	alignment	fasta	pdb	script	32	0.292	alignment	fasta	pdb	script
B_lectin	108	0.855	alignment	fasta	pdb	script	103	0.353	alignment	fasta	pdb	script
Bac_DNA_binding	67	2.244	alignment	fasta	pdb	script	60	0.508	alignment	fasta	pdb	script
bac_luciferase	204	2.378	alignment	fasta	pdb	script	167	0.497	alignment	fasta	pdb	script
Bac_rhodopsin	211	1.418	alignment	fasta	pdb	script	196	0.391	alignment	fasta	pdb	script
Bacterial_PQQ	532	1.314	alignment	fasta	pdb	script	499	0.432	alignment	fasta	pdb	script
Band_41_M	100	1.394	alignment	fasta	pdb	script	93	0.322	alignment	fasta	pdb	script
Band_41_N	77	1.727	alignment	fasta	pdb	script	61	0.355	alignment	fasta	pdb	script
Band_41_NME	266	1.952	alignment	fasta	pdb	script	230	0.372	alignment	fasta	pdb	script
Bcl-2	130	2.710	alignment	fasta	pdb	script	115	0.675	alignment	fasta	pdb	script
Binary_toxA	178	2.192	alignment	fasta	pdb	script	142	0.573	alignment	fasta	pdb	script
biotin_lipoyl	67	2.517	alignment	fasta	pdb	script	50	0.931	alignment	fasta	pdb	script
BIR	70	2.630	alignment	fasta	pdb	script	54	0.828	alignment	fasta	pdb	script
blm	248	1.691	alignment	fasta	pdb	script	221	0.422	alignment	fasta	pdb	script
blmb	169	2.393	alignment	fasta	pdb	script	119	0.678	alignment	fasta	pdb	script
bowman	14	0.691	alignment	fasta	pdb	script	10	0.353	alignment	fasta	pdb	script
bromodomain	103	1.522	alignment	fasta	pdb	script	98	0.336	alignment	fasta	pdb	script
bv	104	3.702	alignment	fasta	pdb	script	56	1.119	alignment	fasta	pdb	script
C1	46	1.927	alignment	fasta	pdb	script	37	0.725	alignment	fasta	pdb	script
C2	118	2.618	alignment	fasta	pdb	script	96	0.476	alignment	fasta	pdb	script
cah	210	1.547	alignment	fasta	pdb	script	171	0.433	alignment	fasta	pdb	script
cat	469	1.217	alignment	fasta	pdb	script	452	0.396	alignment	fasta	pdb	script
cat3	178	2.316	alignment	fasta	pdb	script	139	0.571	alignment	fasta	pdb	script
CBD_3	132	1.927	alignment	fasta	pdb	script	102	0.626	alignment	fasta	pdb	script
cbm12	39	2.110	alignment	fasta	pdb	script	27	0.931	alignment	fasta	pdb	script
CBM_20	93	1.532	alignment	fasta	pdb	script	65	0.398	alignment	fasta	pdb	script
cbp	68	3.624	alignment	fasta	pdb	script	61	0.699	alignment	fasta	pdb	script
CBS	30	2.206	alignment	fasta	pdb	script	17	0.539	alignment	fasta	pdb	script
ccH	56	2.215	alignment	fasta	pdb	script	40	0.945	alignment	fasta	pdb	script
cdh	92	2.371	alignment	fasta	pdb	script	60	0.409	alignment	fasta	pdb	script
CH	97	2.098	alignment	fasta	pdb	script	80	0.612	alignment	fasta	pdb	script
chorismate_bind	406	2.188	alignment	fasta	pdb	script	350	0.403	alignment	fasta	pdb	script
chromo	49	2.612	alignment	fasta	pdb	script	29	0.446	alignment	fasta	pdb	script
ChtBD	40	0.794	alignment	fasta	pdb	script	37	0.351	alignment	fasta	pdb	script
citrate_synt	348	1.771	alignment	fasta	pdb	script	314	0.460	alignment	fasta	pdb	script
cks	55	2.027	alignment	fasta	pdb	script	51	0.397	alignment	fasta	pdb	script
cox	404	2.856	alignment	fasta	pdb	script	312	0.649	alignment	fasta	pdb	script
COX2	114	1.124	alignment	fasta	pdb	script	111	0.417	alignment	fasta	pdb	script
COX3	180	1.524	alignment	fasta	pdb	script	165	0.623	alignment	fasta	pdb	script
cpa	289	1.076	alignment	fasta	pdb	script	268	0.319	alignment	fasta	pdb	script
cpn60_TCP1	117	1.684	alignment	fasta	pdb	script	100	0.383	alignment	fasta	pdb	script
CPS	176	4.586	alignment	fasta	pdb	script	162	0.553	alignment	fasta	pdb	script
CPSase_L_chain	95	2.539	alignment	fasta	pdb	script	71	0.811	alignment	fasta	pdb	script
cryst	80	1.559	alignment	fasta	pdb	script	63	0.544	alignment	fasta	pdb	script
csp	66	1.173	alignment	fasta	pdb	script	58	0.474	alignment	fasta	pdb	script
Cu_amine_oxid	597	1.826	alignment	fasta	pdb	script	519	0.508	alignment	fasta	pdb	script
Cu_bind_like	91	1.736	alignment	fasta	pdb	script	73	0.486	alignment	fasta	pdb	script
Cu_nir	332	0.559	alignment	fasta	pdb	script	327	0.183	alignment	fasta	pdb	script
CUB	106	1.514	alignment	fasta	pdb	script	94	0.585	alignment	fasta	pdb	script
cyclin	200	2.868	alignment	fasta	pdb	script	167	0.684	alignment	fasta	pdb	script
cyclo	149	1.815	alignment	fasta	pdb	script	121	0.541	alignment	fasta	pdb	script
Cyclodex_gly_tran	664	1.103	alignment	fasta	pdb	script	632	0.284	alignment	fasta	pdb	script
Cyclotide	21	1.820	alignment	fasta	pdb	script	17	1.320	alignment	fasta	pdb	script
cys	200	1.541	alignment	fasta	pdb	script	168	0.470	alignment	fasta	pdb	script
Cys-protease-3C	173	2.242	alignment	fasta	pdb	script	135	0.617	alignment	fasta	pdb	script
Cys_Met_Meta_PP	367	1.760	alignment	fasta	pdb	script	331	0.435	alignment	fasta	pdb	script
cystatin	81	2.418	alignment	fasta	pdb	script	64	0.470	alignment	fasta	pdb	script
cyt3	91	1.949	alignment	fasta	pdb	script	71	0.411	alignment	fasta	pdb	script
cyt5	68	2.276	alignment	fasta	pdb	script	49	0.721	alignment	fasta	pdb	script
cytb	75	1.545	alignment	fasta	pdb	script	64	0.559	alignment	fasta	pdb	script
cytc	97	1.562	alignment	fasta	pdb	script	86	0.411	alignment	fasta	pdb	script
cyto	145	0.984	alignment	fasta	pdb	script	143	0.289	alignment	fasta	pdb	script
cytprime	119	1.747	alignment	fasta	pdb	script	106	0.288	alignment	fasta	pdb	script
DAHP_synth_1	233	2.041	alignment	fasta	pdb	script	192	0.534	alignment	fasta	pdb	script
dCMP_cyt_deam	95	1.779	alignment	fasta	pdb	script	85	0.470	alignment	fasta	pdb	script
DEAD	152	2.878	alignment	fasta	pdb	script	125	0.784	alignment	fasta	pdb	script
DEATH	76	3.390	alignment	fasta	pdb	script	62	0.706	alignment	fasta	pdb	script
dhfr	155	1.818	alignment	fasta	pdb	script	130	0.643	alignment	fasta	pdb	script
DHH	182	0.712	alignment	fasta	pdb	script	175	0.279	alignment	fasta	pdb	script
DHHA2	117	0.817	alignment	fasta	pdb	script	114	0.297	alignment	fasta	pdb	script
DHOdehase	260	2.191	alignment	fasta	pdb	script	200	0.448	alignment	fasta	pdb	script
DISIN	35	2.564	alignment	fasta	pdb	script	28	1.077	alignment	fasta	pdb	script
DMRL_synthase	137	1.479	alignment	fasta	pdb	script	108	0.291	alignment	fasta	pdb	script
DNA_pol3_beta	104	2.033	alignment	fasta	pdb	script	83	0.582	alignment	fasta	pdb	script
DNA_PPF	92	3.457	alignment	fasta	pdb	script	71	0.823	alignment	fasta	pdb	script
dpo1	483	2.853	alignment	fasta	pdb	script	389	0.497	alignment	fasta	pdb	script
dsrm	64	1.905	alignment	fasta	pdb	script	51	0.790	alignment	fasta	pdb	script
DUF170	56	2.095	alignment	fasta	pdb	script	41	0.454	alignment	fasta	pdb	script
dutpase	117	2.049	alignment	fasta	pdb	script	108	0.664	alignment	fasta	pdb	script
E2_C	71	0.723	alignment	fasta	pdb	script	67	0.284	alignment	fasta	pdb	script
ech	241	2.031	alignment	fasta	pdb	script	227	0.409	alignment	fasta	pdb	script
EF1BD	82	3.115	alignment	fasta	pdb	script	74	1.067	alignment	fasta	pdb	script
EF_TS	66	1.659	alignment	fasta	pdb	script	62	0.428	alignment	fasta	pdb	script
EFTU_2	86	1.439	alignment	fasta	pdb	script	79	0.531	alignment	fasta	pdb	script
EFTU_C	93	0.963	alignment	fasta	pdb	script	92	0.364	alignment	fasta	pdb	script
egf	33	2.730	alignment	fasta	pdb	script	17	0.964	alignment	fasta	pdb	script
EGF_Lam	43	3.084	alignment	fasta	pdb	script	32	0.933	alignment	fasta	pdb	script
ENTH	124	2.098	alignment	fasta	pdb	script	98	0.275	alignment	fasta	pdb	script
Epimerase	271	2.195	alignment	fasta	pdb	script	219	0.524	alignment	fasta	pdb	script
ets	81	2.523	alignment	fasta	pdb	script	64	0.760	alignment	fasta	pdb	script
Extradiol_dioxy	266	1.995	alignment	fasta	pdb	script	217	0.440	alignment	fasta	pdb	script
fabp	123	1.859	alignment	fasta	pdb	script	112	0.697	alignment	fasta	pdb	script
FAD-oxidase_C	162	3.537	alignment	fasta	pdb	script	75	0.883	alignment	fasta	pdb	script
FAD-oxidase_NC	349	3.553	alignment	fasta	pdb	script	221	0.898	alignment	fasta	pdb	script
FAD_binding_4	179	2.743	alignment	fasta	pdb	script	130	0.722	alignment	fasta	pdb	script
Fapy_DNA_glyco	245	1.643	alignment	fasta	pdb	script	208	0.519	alignment	fasta	pdb	script
fbpase	303	1.309	alignment	fasta	pdb	script	281	0.446	alignment	fasta	pdb	script
fer2	80	2.568	alignment	fasta	pdb	script	44	0.793	alignment	fasta	pdb	script
ferritin	150	0.928	alignment	fasta	pdb	script	141	0.145	alignment	fasta	pdb	script
fibrinogen_C	194	1.328	alignment	fasta	pdb	script	180	0.528	alignment	fasta	pdb	script
Filamin	80	2.468	alignment	fasta	pdb	script	56	0.662	alignment	fasta	pdb	script
fkbp	107	1.427	alignment	fasta	pdb	script	101	0.621	alignment	fasta	pdb	script
flav	133	1.768	alignment	fasta	pdb	script	106	0.506	alignment	fasta	pdb	script
FN1	42	2.009	alignment	fasta	pdb	script	41	0.733	alignment	fasta	pdb	script
fn3	74	2.717	alignment	fasta	pdb	script	47	0.852	alignment	fasta	pdb	script
Fork_head	75	2.581	alignment	fasta	pdb	script	44	0.534	alignment	fasta	pdb	script
GAF	121	2.381	alignment	fasta	pdb	script	92	0.436	alignment	fasta	pdb	script
GAL4	33	1.136	alignment	fasta	pdb	script	32	0.426	alignment	fasta	pdb	script
galpha	302	1.718	alignment	fasta	pdb	script	291	0.425	alignment	fasta	pdb	script
GATA	43	1.893	alignment	fasta	pdb	script	41	0.778	alignment	fasta	pdb	script
GATase	173	2.029	alignment	fasta	pdb	script	123	0.599	alignment	fasta	pdb	script
GATase_2	215	1.865	alignment	fasta	pdb	script	182	0.589	alignment	fasta	pdb	script
GBP_PSP	17	1.344	alignment	fasta	pdb	script	12	0.902	alignment	fasta	pdb	script
GEL	86	2.646	alignment	fasta	pdb	script	53	0.691	alignment	fasta	pdb	script
ghf1	269	1.631	alignment	fasta	pdb	script	246	0.464	alignment	fasta	pdb	script
ghf10	288	1.630	alignment	fasta	pdb	script	247	0.487	alignment	fasta	pdb	script
ghf11	174	1.534	alignment	fasta	pdb	script	150	0.430	alignment	fasta	pdb	script
ghf14	390	1.751	alignment	fasta	pdb	script	353	0.378	alignment	fasta	pdb	script
ghf18	214	3.106	alignment	fasta	pdb	script	117	0.798	alignment	fasta	pdb	script
ghf22	119	1.323	alignment	fasta	pdb	script	100	0.362	alignment	fasta	pdb	script
ghf33	297	2.498	alignment	fasta	pdb	script	228	0.807	alignment	fasta	pdb	script
ghf34	375	1.714	alignment	fasta	pdb	script	337	0.546	alignment	fasta	pdb	script
ghf5	229	2.641	alignment	fasta	pdb	script	141	0.522	alignment	fasta	pdb	script
ghf6	270	2.078	alignment	fasta	pdb	script	222	0.453	alignment	fasta	pdb	script
ghf7	354	1.809	alignment	fasta	pdb	script	321	0.456	alignment	fasta	pdb	script
GLA	32	2.566	alignment	fasta	pdb	script	17	0.804	alignment	fasta	pdb	script
glnasn	309	1.092	alignment	fasta	pdb	script	299	0.367	alignment	fasta	pdb	script
glob	116	1.862	alignment	fasta	pdb	script	102	0.567	alignment	fasta	pdb	script
gluts	199	1.857	alignment	fasta	pdb	script	175	0.588	alignment	fasta	pdb	script
Glyco_hydro_18	333	1.864	alignment	fasta	pdb	script	280	0.429	alignment	fasta	pdb	script
Glyco_hydro_18_D1	273	1.747	alignment	fasta	pdb	script	243	0.510	alignment	fasta	pdb	script
Glyco_hydro_18_D2	60	2.090	alignment	fasta	pdb	script	47	0.632	alignment	fasta	pdb	script
Glyco_hydro_2	75	2.558	alignment	fasta	pdb	script	57	0.799	alignment	fasta	pdb	script
gpdh	325	1.302	alignment	fasta	pdb	script	297	0.487	alignment	fasta	pdb	script
gpr	147	1.468	alignment	fasta	pdb	script	139	0.497	alignment	fasta	pdb	script
grs	267	3.144	alignment	fasta	pdb	script	202	0.524	alignment	fasta	pdb	script
gtp	144	2.088	alignment	fasta	pdb	script	98	0.500	alignment	fasta	pdb	script
Haloperoxidase	244	2.981	alignment	fasta	pdb	script	196	0.704	alignment	fasta	pdb	script
HATPase_c	134	2.874	alignment	fasta	pdb	script	92	0.771	alignment	fasta	pdb	script
helicase_C	113	2.508	alignment	fasta	pdb	script	72	0.854	alignment	fasta	pdb	script
helicase_NC	283	5.529	alignment	fasta	pdb	script	246	0.784	alignment	fasta	pdb	script
hemopexin	181	2.076	alignment	fasta	pdb	script	134	0.658	alignment	fasta	pdb	script
hexapep	112	1.175	alignment	fasta	pdb	script	102	0.603	alignment	fasta	pdb	script
hexokinase	430	2.303	alignment	fasta	pdb	script	412	0.388	alignment	fasta	pdb	script
HGTP_anticodon	91	1.912	alignment	fasta	pdb	script	78	0.582	alignment	fasta	pdb	script
hip	57	2.003	alignment	fasta	pdb	script	41	0.471	alignment	fasta	pdb	script
histone	66	2.117	alignment	fasta	pdb	script	58	0.326	alignment	fasta	pdb	script
hla	178	0.808	alignment	fasta	pdb	script	177	0.372	alignment	fasta	pdb	script
HLH	51	2.370	alignment	fasta	pdb	script	37	0.471	alignment	fasta	pdb	script
HMA	68	2.212	alignment	fasta	pdb	script	55	0.592	alignment	fasta	pdb	script
HMG_box	64	3.194	alignment	fasta	pdb	script	54	0.763	alignment	fasta	pdb	script
hom	49	1.181	alignment	fasta	pdb	script	45	0.369	alignment	fasta	pdb	script
hormone_rec	191	2.766	alignment	fasta	pdb	script	160	0.674	alignment	fasta	pdb	script
hpr	80	2.538	alignment	fasta	pdb	script	44	0.581	alignment	fasta	pdb	script
hr	64	2.251	alignment	fasta	pdb	script	52	0.831	alignment	fasta	pdb	script
HTH_AraC	48	1.836	alignment	fasta	pdb	script	48	0.743	alignment	fasta	pdb	script
Huristasin	30	1.784	alignment	fasta	pdb	script	24	0.878	alignment	fasta	pdb	script
icd	333	2.413	alignment	fasta	pdb	script	307	0.410	alignment	fasta	pdb	script
igC1	86	1.653	alignment	fasta	pdb	script	78	0.551	alignment	fasta	pdb	script
igcon	86	2.085	alignment	fasta	pdb	script	60	0.801	alignment	fasta	pdb	script
igI	73	3.285	alignment	fasta	pdb	script	52	1.063	alignment	fasta	pdb	script
igps	176	2.593	alignment	fasta	pdb	script	127	0.617	alignment	fasta	pdb	script
igV	79	2.253	alignment	fasta	pdb	script	57	0.644	alignment	fasta	pdb	script
igvar-h	110	1.262	alignment	fasta	pdb	script	98	0.503	alignment	fasta	pdb	script
igvar-l	94	1.574	alignment	fasta	pdb	script	76	0.432	alignment	fasta	pdb	script
il8	34	3.168	alignment	fasta	pdb	script	20	0.707	alignment	fasta	pdb	script
inositol_P	231	2.633	alignment	fasta	pdb	script	172	0.637	alignment	fasta	pdb	script
ins	42	2.437	alignment	fasta	pdb	script	28	0.649	alignment	fasta	pdb	script
int	165	2.609	alignment	fasta	pdb	script	127	0.558	alignment	fasta	pdb	script
intb	119	2.138	alignment	fasta	pdb	script	85	0.751	alignment	fasta	pdb	script
Invasin	88	1.901	alignment	fasta	pdb	script	79	0.685	alignment	fasta	pdb	script
KAS	301	2.305	alignment	fasta	pdb	script	226	0.471	alignment	fasta	pdb	script
kazal	48	1.985	alignment	fasta	pdb	script	36	0.482	alignment	fasta	pdb	script
kex	371	2.440	alignment	fasta	pdb	script	316	0.508	alignment	fasta	pdb	script
kinase	216	2.702	alignment	fasta	pdb	script	167	0.505	alignment	fasta	pdb	script
KISc	285	2.011	alignment	fasta	pdb	script	247	0.373	alignment	fasta	pdb	script
kringle	75	2.300	alignment	fasta	pdb	script	54	0.778	alignment	fasta	pdb	script
kunitz	52	2.051	alignment	fasta	pdb	script	32	0.532	alignment	fasta	pdb	script
lacI	47	1.898	alignment	fasta	pdb	script	37	0.440	alignment	fasta	pdb	script
lamb	361	1.747	alignment	fasta	pdb	script	300	0.599	alignment	fasta	pdb	script
laminin_G	149	2.662	alignment	fasta	pdb	script	97	0.661	alignment	fasta	pdb	script
ldh	273	1.987	alignment	fasta	pdb	script	233	0.669	alignment	fasta	pdb	script
LDLa	36	2.490	alignment	fasta	pdb	script	23	1.122	alignment	fasta	pdb	script
leukocidin	236	1.743	alignment	fasta	pdb	script	209	0.352	alignment	fasta	pdb	script
Levi_coat	112	2.133	alignment	fasta	pdb	script	77	0.486	alignment	fasta	pdb	script
ligase-CoA	123	2.403	alignment	fasta	pdb	script	109	0.628	alignment	fasta	pdb	script
LIM	56	3.489	alignment	fasta	pdb	script	43	0.878	alignment	fasta	pdb	script
lipase	416	1.193	alignment	fasta	pdb	script	400	0.249	alignment	fasta	pdb	script
Lipase_3	252	1.784	alignment	fasta	pdb	script	214	0.456	alignment	fasta	pdb	script
lipocalin	126	2.978	alignment	fasta	pdb	script	89	0.678	alignment	fasta	pdb	script
LMWPc	154	1.260	alignment	fasta	pdb	script	140	0.201	alignment	fasta	pdb	script
LRR	317	2.988	alignment	fasta	pdb	script	284	0.538	alignment	fasta	pdb	script
lta	183	1.019	alignment	fasta	pdb	script	175	0.422	alignment	fasta	pdb	script
ltb	94	1.943	alignment	fasta	pdb	script	84	0.428	alignment	fasta	pdb	script
ltn	204	1.336	alignment	fasta	pdb	script	171	0.404	alignment	fasta	pdb	script
Lum_binding	87	1.173	alignment	fasta	pdb	script	81	0.426	alignment	fasta	pdb	script
LuxS	135	1.399	alignment	fasta	pdb	script	130	0.647	alignment	fasta	pdb	script
lyase_1	365	2.918	alignment	fasta	pdb	script	330	0.566	alignment	fasta	pdb	script
MCR_alpha	275	0.623	alignment	fasta	pdb	script	271	0.219	alignment	fasta	pdb	script
MCR_alpha_N	263	0.809	alignment	fasta	pdb	script	254	0.237	alignment	fasta	pdb	script
MCR_alpha_NC	538	0.736	alignment	fasta	pdb	script	526	0.228	alignment	fasta	pdb	script
MCR_beta	247	0.680	alignment	fasta	pdb	script	242	0.228	alignment	fasta	pdb	script
MCR_beta_N	183	0.908	alignment	fasta	pdb	script	183	0.311	alignment	fasta	pdb	script
MCR_beta_NC	430	0.820	alignment	fasta	pdb	script	425	0.255	alignment	fasta	pdb	script
MCR_gamma	241	0.842	alignment	fasta	pdb	script	233	0.284	alignment	fasta	pdb	script
mdd	377	1.402	alignment	fasta	pdb	script	362	0.386	alignment	fasta	pdb	script
Methyltransf_1	134	2.325	alignment	fasta	pdb	script	104	0.532	alignment	fasta	pdb	script
MHC_II_alpha_NC	174	1.786	alignment	fasta	pdb	script	144	0.481	alignment	fasta	pdb	script
MHC_II_beta_NC	174	2.201	alignment	fasta	pdb	script	148	0.410	alignment	fasta	pdb	script
MHC_II_C	90	1.831	alignment	fasta	pdb	script	71	0.488	alignment	fasta	pdb	script
MHC_II_N	49	2.361	alignment	fasta	pdb	script	40	0.872	alignment	fasta	pdb	script
MIF	114	0.889	alignment	fasta	pdb	script	113	0.268	alignment	fasta	pdb	script
mle	338	1.641	alignment	fasta	pdb	script	306	0.513	alignment	fasta	pdb	script
MM_CoA_mutase	112	3.135	alignment	fasta	pdb	script	63	0.871	alignment	fasta	pdb	script
MMOB	67	5.114	alignment	fasta	pdb	script	52	0.784	alignment	fasta	pdb	script
mmp	155	1.047	alignment	fasta	pdb	script	140	0.360	alignment	fasta	pdb	script
MoCF_biosynth	127	2.240	alignment	fasta	pdb	script	98	0.753	alignment	fasta	pdb	script
mofe	400	2.482	alignment	fasta	pdb	script	338	0.620	alignment	fasta	pdb	script
molybdopterin	608	3.023	alignment	fasta	pdb	script	520	0.531	alignment	fasta	pdb	script
msb	85	2.003	alignment	fasta	pdb	script	67	0.491	alignment	fasta	pdb	script
mthina	31	1.762	alignment	fasta	pdb	script	28	1.109	alignment	fasta	pdb	script
mthinb	27	2.168	alignment	fasta	pdb	script	25	1.246	alignment	fasta	pdb	script
Mur_ligase_C	101	2.740	alignment	fasta	pdb	script	79	0.905	alignment	fasta	pdb	script
myb_DNA-binding	41	2.434	alignment	fasta	pdb	script	37	0.754	alignment	fasta	pdb	script
mycin	107	2.047	alignment	fasta	pdb	script	90	0.825	alignment	fasta	pdb	script
NADHdh_2	230	1.695	alignment	fasta	pdb	script	221	0.288	alignment	fasta	pdb	script
ndk	143	1.033	alignment	fasta	pdb	script	135	0.197	alignment	fasta	pdb	script
neurotox	26	2.199	alignment	fasta	pdb	script	20	0.532	alignment	fasta	pdb	script
ngf	103	1.660	alignment	fasta	pdb	script	89	0.362	alignment	fasta	pdb	script
NiFeSe_Hases	528	0.809	alignment	fasta	pdb	script	515	0.227	alignment	fasta	pdb	script
Nitroreductase	169	2.212	alignment	fasta	pdb	script	147	0.619	alignment	fasta	pdb	script
NO_synthase	297	1.478	alignment	fasta	pdb	script	269	0.393	alignment	fasta	pdb	script
NTP_transf_2_2	109	1.683	alignment	fasta	pdb	script	91	0.452	alignment	fasta	pdb	script
NTP_transferase	232	2.088	alignment	fasta	pdb	script	197	0.519	alignment	fasta	pdb	script
oat	379	2.226	alignment	fasta	pdb	script	326	0.572	alignment	fasta	pdb	script
Orn_DAP_Arg_deC	124	0.913	alignment	fasta	pdb	script	118	0.202	alignment	fasta	pdb	script
OTCace	277	1.989	alignment	fasta	pdb	script	253	0.492	alignment	fasta	pdb	script
oxidored_q6	251	0.993	alignment	fasta	pdb	script	241	0.320	alignment	fasta	pdb	script
P	45	1.600	alignment	fasta	pdb	script	41	0.499	alignment	fasta	pdb	script
p450	305	2.880	alignment	fasta	pdb	script	260	0.560	alignment	fasta	pdb	script
PA_phosphatase	250	2.214	alignment	fasta	pdb	script	205	0.472	alignment	fasta	pdb	script
parv	105	1.099	alignment	fasta	pdb	script	100	0.250	alignment	fasta	pdb	script
PAS	99	2.316	alignment	fasta	pdb	script	82	0.512	alignment	fasta	pdb	script
pdc	472	3.003	alignment	fasta	pdb	script	380	0.508	alignment	fasta	pdb	script
PDZ	81	2.071	alignment	fasta	pdb	script	67	0.617	alignment	fasta	pdb	script
pec_lyase	265	2.197	alignment	fasta	pdb	script	192	0.601	alignment	fasta	pdb	script
PEP-utilizers	98	1.901	alignment	fasta	pdb	script	70	0.581	alignment	fasta	pdb	script
Peptidase_M24	206	2.126	alignment	fasta	pdb	script	164	0.582	alignment	fasta	pdb	script
Peptidase_S21	185	1.816	alignment	fasta	pdb	script	154	0.485	alignment	fasta	pdb	script
peroxidase	267	2.005	alignment	fasta	pdb	script	214	0.496	alignment	fasta	pdb	script
PGAM	181	2.009	alignment	fasta	pdb	script	149	0.455	alignment	fasta	pdb	script
pgk	388	3.427	alignment	fasta	pdb	script	374	0.361	alignment	fasta	pdb	script
PH	71	3.294	alignment	fasta	pdb	script	36	0.882	alignment	fasta	pdb	script
Phage_integrase	122	3.255	alignment	fasta	pdb	script	95	0.795	alignment	fasta	pdb	script
phc	132	1.733	alignment	fasta	pdb	script	124	0.457	alignment	fasta	pdb	script
phero	35	1.804	alignment	fasta	pdb	script	30	0.421	alignment	fasta	pdb	script
phoslip	113	1.533	alignment	fasta	pdb	script	99	0.611	alignment	fasta	pdb	script
phs	766	1.784	alignment	fasta	pdb	script	701	0.480	alignment	fasta	pdb	script
pilin	76	3.579	alignment	fasta	pdb	script	50	0.911	alignment	fasta	pdb	script
PK	451	3.256	alignment	fasta	pdb	script	433	0.410	alignment	fasta	pdb	script
plantltp	72	2.982	alignment	fasta	pdb	script	43	0.560	alignment	fasta	pdb	script
planttoxin	42	1.545	alignment	fasta	pdb	script	37	0.512	alignment	fasta	pdb	script
pnp	226	2.563	alignment	fasta	pdb	script	158	0.474	alignment	fasta	pdb	script
porin	242	2.616	alignment	fasta	pdb	script	174	0.707	alignment	fasta	pdb	script
pot	60	2.120	alignment	fasta	pdb	script	49	0.658	alignment	fasta	pdb	script
pp	22	1.721	alignment	fasta	pdb	script	21	0.617	alignment	fasta	pdb	script
ppase	167	1.514	alignment	fasta	pdb	script	144	0.477	alignment	fasta	pdb	script
Pro_CA	191	1.961	alignment	fasta	pdb	script	172	0.519	alignment	fasta	pdb	script
profilin	122	1.583	alignment	fasta	pdb	script	101	0.555	alignment	fasta	pdb	script
Propep_M14	85	1.309	alignment	fasta	pdb	script	77	0.310	alignment	fasta	pdb	script
proteasome	163	2.394	alignment	fasta	pdb	script	124	0.524	alignment	fasta	pdb	script
protg	55	1.960	alignment	fasta	pdb	script	42	0.667	alignment	fasta	pdb	script
prt	129	2.657	alignment	fasta	pdb	script	85	0.707	alignment	fasta	pdb	script
PSI_PsaE	61	1.470	alignment	fasta	pdb	script	54	0.472	alignment	fasta	pdb	script
PTB	109	2.726	alignment	fasta	pdb	script	82	1.064	alignment	fasta	pdb	script
ptpase	259	1.262	alignment	fasta	pdb	script	233	0.329	alignment	fasta	pdb	script
recombinase	35	1.774	alignment	fasta	pdb	script	30	0.498	alignment	fasta	pdb	script
reductases	207	2.620	alignment	fasta	pdb	script	119	0.606	alignment	fasta	pdb	script
rep	62	1.671	alignment	fasta	pdb	script	54	0.281	alignment	fasta	pdb	script
response_reg	93	2.514	alignment	fasta	pdb	script	57	0.828	alignment	fasta	pdb	script
RGS	122	2.028	alignment	fasta	pdb	script	106	0.514	alignment	fasta	pdb	script
Rhodanese	101	2.365	alignment	fasta	pdb	script	73	0.599	alignment	fasta	pdb	script
rhv	397	2.114	alignment	fasta	pdb	script	291	0.576	alignment	fasta	pdb	script
Ribosomal_L1	137	2.371	alignment	fasta	pdb	script	98	0.443	alignment	fasta	pdb	script
Ribosomal_L6_D	68	2.074	alignment	fasta	pdb	script	50	0.667	alignment	fasta	pdb	script
Ribosomal_L7Ae	98	2.270	alignment	fasta	pdb	script	85	0.767	alignment	fasta	pdb	script
ricin	236	1.484	alignment	fasta	pdb	script	204	0.452	alignment	fasta	pdb	script
RING	17	2.047	alignment	fasta	pdb	script	9	0.953	alignment	fasta	pdb	script
rnase	99	0.743	alignment	fasta	pdb	script	95	0.223	alignment	fasta	pdb	script
RNase_HII	194	1.471	alignment	fasta	pdb	script	182	0.333	alignment	fasta	pdb	script
rnasemam	104	2.335	alignment	fasta	pdb	script	81	0.691	alignment	fasta	pdb	script
rnh	113	1.818	alignment	fasta	pdb	script	93	0.536	alignment	fasta	pdb	script
rnr	266	1.997	alignment	fasta	pdb	script	238	0.538	alignment	fasta	pdb	script
RRF	163	6.492	alignment	fasta	pdb	script	137	0.522	alignment	fasta	pdb	script
rrm	61	2.448	alignment	fasta	pdb	script	40	0.627	alignment	fasta	pdb	script
rub	44	0.823	alignment	fasta	pdb	script	42	0.286	alignment	fasta	pdb	script
RuBisCO_large	281	1.565	alignment	fasta	pdb	script	255	0.442	alignment	fasta	pdb	script
RuBisCO_large_N	106	1.489	alignment	fasta	pdb	script	91	0.391	alignment	fasta	pdb	script
RuBisCO_large_NC	388	1.614	alignment	fasta	pdb	script	352	0.425	alignment	fasta	pdb	script
RuBisCO_small	101	1.040	alignment	fasta	pdb	script	93	0.388	alignment	fasta	pdb	script
rvp	98	1.674	alignment	fasta	pdb	script	81	0.407	alignment	fasta	pdb	script
S4	47	1.251	alignment	fasta	pdb	script	47	0.475	alignment	fasta	pdb	script
S_100	64	2.259	alignment	fasta	pdb	script	43	0.716	alignment	fasta	pdb	script
SAP	33	1.750	alignment	fasta	pdb	script	29	0.718	alignment	fasta	pdb	script
SBP_bacterial_1	294	3.127	alignment	fasta	pdb	script	231	0.570	alignment	fasta	pdb	script
scorptoxin	57	2.218	alignment	fasta	pdb	script	44	0.840	alignment	fasta	pdb	script
sdr	198	2.213	alignment	fasta	pdb	script	156	0.703	alignment	fasta	pdb	script
seatoxin	8	1.550	alignment	fasta	pdb	script	6	0.638	alignment	fasta	pdb	script
serbact	174	1.241	alignment	fasta	pdb	script	149	0.426	alignment	fasta	pdb	script
sermam	190	1.568	alignment	fasta	pdb	script	157	0.569	alignment	fasta	pdb	script
serpin	343	2.050	alignment	fasta	pdb	script	293	0.480	alignment	fasta	pdb	script
sh2	89	2.594	alignment	fasta	pdb	script	64	0.869	alignment	fasta	pdb	script
sh3	47	1.583	alignment	fasta	pdb	script	32	0.648	alignment	fasta	pdb	script
slectin	126	1.456	alignment	fasta	pdb	script	112	0.601	alignment	fasta	pdb	script
Sm	63	1.374	alignment	fasta	pdb	script	58	0.441	alignment	fasta	pdb	script
sodcu	138	1.824	alignment	fasta	pdb	script	108	0.486	alignment	fasta	pdb	script
sodfe	168	1.657	alignment	fasta	pdb	script	127	0.531	alignment	fasta	pdb	script
squash	25	1.771	alignment	fasta	pdb	script	16	0.622	alignment	fasta	pdb	script
SRF-TF	63	1.471	alignment	fasta	pdb	script	57	0.254	alignment	fasta	pdb	script
Stap_Strp_toxin	176	2.429	alignment	fasta	pdb	script	115	0.473	alignment	fasta	pdb	script
sti	148	1.919	alignment	fasta	pdb	script	112	0.644	alignment	fasta	pdb	script
subt	227	1.916	alignment	fasta	pdb	script	162	0.607	alignment	fasta	pdb	script
sugbp	264	2.324	alignment	fasta	pdb	script	227	0.501	alignment	fasta	pdb	script
Sulfotransfer	189	2.740	alignment	fasta	pdb	script	132	0.724	alignment	fasta	pdb	script
svmp	197	1.208	alignment	fasta	pdb	script	180	0.212	alignment	fasta	pdb	script
tbpc	176	1.654	alignment	fasta	pdb	script	164	0.283	alignment	fasta	pdb	script
tgfb	57	1.395	alignment	fasta	pdb	script	47	0.692	alignment	fasta	pdb	script
THAUMATIN	199	1.025	alignment	fasta	pdb	script	175	0.319	alignment	fasta	pdb	script
thionin	45	0.881	alignment	fasta	pdb	script	44	0.610	alignment	fasta	pdb	script
thiored	66	2.454	alignment	fasta	pdb	script	36	0.811	alignment	fasta	pdb	script
TIG	80	0.778	alignment	fasta	pdb	script	79	0.409	alignment	fasta	pdb	script
TIL	48	3.043	alignment	fasta	pdb	script	25	0.561	alignment	fasta	pdb	script
tim	243	1.370	alignment	fasta	pdb	script	236	0.445	alignment	fasta	pdb	script
tln	273	1.676	alignment	fasta	pdb	script	239	0.340	alignment	fasta	pdb	script
tms	250	1.656	alignment	fasta	pdb	script	224	0.502	alignment	fasta	pdb	script
TMV_coat	149	2.532	alignment	fasta	pdb	script	122	1.145	alignment	fasta	pdb	script
TNF	133	1.861	alignment	fasta	pdb	script	104	0.536	alignment	fasta	pdb	script
Toprim	78	2.578	alignment	fasta	pdb	script	54	0.460	alignment	fasta	pdb	script
toxin	48	2.960	alignment	fasta	pdb	script	23	0.939	alignment	fasta	pdb	script
toxin_2	24	1.844	alignment	fasta	pdb	script	16	0.848	alignment	fasta	pdb	script
TPR	112	2.113	alignment	fasta	pdb	script	100	0.256	alignment	fasta	pdb	script
transket_pyr	156	2.177	alignment	fasta	pdb	script	136	0.872	alignment	fasta	pdb	script
transketolase_C	113	2.198	alignment	fasta	pdb	script	86	0.630	alignment	fasta	pdb	script
transketolase_PC	269	2.348	alignment	fasta	pdb	script	222	0.787	alignment	fasta	pdb	script
TRANSTHYRETIN	114	1.133	alignment	fasta	pdb	script	106	0.590	alignment	fasta	pdb	script
trfl	283	1.409	alignment	fasta	pdb	script	251	0.459	alignment	fasta	pdb	script
tRNA-synt_1	456	3.404	alignment	fasta	pdb	script	402	0.616	alignment	fasta	pdb	script
tRNA-synt_2b	215	2.422	alignment	fasta	pdb	script	167	0.713	alignment	fasta	pdb	script
tRNA_bind	88	1.992	alignment	fasta	pdb	script	68	0.650	alignment	fasta	pdb	script
tryp_alpha_amyl	98	2.146	alignment	fasta	pdb	script	80	0.673	alignment	fasta	pdb	script
TyrKc	236	2.303	alignment	fasta	pdb	script	206	0.388	alignment	fasta	pdb	script
UBQ	73	0.707	alignment	fasta	pdb	script	72	0.228	alignment	fasta	pdb	script
uce	118	1.834	alignment	fasta	pdb	script	95	0.387	alignment	fasta	pdb	script
UCR_TM	59	1.847	alignment	fasta	pdb	script	53	0.475	alignment	fasta	pdb	script
UcrQ	73	1.898	alignment	fasta	pdb	script	59	0.455	alignment	fasta	pdb	script
ung	214	1.223	alignment	fasta	pdb	script	203	0.342	alignment	fasta	pdb	script
UPF0076	123	1.356	alignment	fasta	pdb	script	114	0.465	alignment	fasta	pdb	script
WW	28	1.869	alignment	fasta	pdb	script	20	0.416	alignment	fasta	pdb	script
xia	383	1.199	alignment	fasta	pdb	script	352	0.378	alignment	fasta	pdb	script
Yers_vir_YopE	90	1.439	alignment	fasta	pdb	script	78	0.577	alignment	fasta	pdb	script
YgbB	129	1.564	alignment	fasta	pdb	script	113	0.385	alignment	fasta	pdb	script
zf-CCHH	25	1.506	alignment	fasta	pdb	script	20	0.533	alignment	fasta	pdb	script