#bin chrom chromStart chromEnd name score strand refNCBI refUCSC observed molType class valid avHet avHetSE func locType weight exceptions submitterCount submitters alleleFreqCount alleles alleleNs alleleFreqs bitfields 111 chr1 40370176 40370176 rs564192510 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4477.000000,531.000000, 0.893970,0.106030, 131 chr1 61341695 61341699 rs146746778 0 + TTTA TTTA -/TTTA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,PJP,SSMP, 2 -,TTTA, 3258.000000,1750.000000, 0.650559,0.349441, 245 chr1 180879355 180879367 rs142596889 0 + CTGGCGACAGCA CTGGCGACAGCA -/CTGGCGACAGCA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BL,GMI,LUNTER, 2 -,CTGGCGACAGCA, 510.000000,4498.000000, 0.101837,0.898163, 585 chr1 10177 10177 rs367896724 0 + - - -/C genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,BILGI_BIOE, 2 -,C, 2878.000000,2130.000000, 0.574681,0.425319, 585 chr1 10352 10352 rs555500075 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,A, 2817.000000,2191.000000, 0.562500,0.437500, 585 chr1 11007 11008 rs575272151 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4567.000000,441.000000, 0.911941,0.088059, 585 chr1 11011 11012 rs544419019 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4567.000000,441.000000, 0.911941,0.088059, 585 chr1 13109 13110 rs540538026 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, 585 chr1 13115 13116 rs62635286 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI, 2 G,T, 486.000000,4522.000000, 0.097045,0.902955, 585 chr1 13117 13118 rs200579949 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,G, 4522.000000,486.000000, 0.902955,0.097045, 585 chr1 13272 13273 rs531730856 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 476.000000,4532.000000, 0.095048,0.904952, 585 chr1 14463 14464 rs546169444 0 + A A A/T genomic single unknown 0 0 near-gene-3,ncRNA exact 1 1 1000GENOMES, 2 A,T, 4528.000000,480.000000, 0.904153,0.095847, 585 chr1 14598 14599 rs531646671 0 + T T A/T genomic single unknown 0 0 near-gene-3,ncRNA exact 1 1 1000GENOMES, 2 A,T, 739.000000,4269.000000, 0.147564,0.852436, 585 chr1 14603 14604 rs541940975 0 + A A A/G genomic single unknown 0 0 near-gene-3,ncRNA exact 1 1 1000GENOMES, 2 A,G, 4269.000000,739.000000, 0.852436,0.147564, 585 chr1 14676 14677 rs201327123 0 + G G A/G genomic single by-frequency 0.085039 0.187851 near-gene-3,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 17.978001,386.022003, 0.044500,0.955500, 585 chr1 14929 14930 rs75454623 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,ENSEMBL,GMI,SSMP, 2 A,G, 2593.000000,2415.000000, 0.517772,0.482228, 585 chr1 14932 14933 rs199856693 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, 585 chr1 14975 14976 rs71252251 0 - G G C/T genomic single by-cluster,by-frequency 0.090864 0.19281 ncRNA exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,HUMANGENOME_JCVI,SSMP, 2 C,T, 319.970001,16.030001, 0.952292,0.047708, 585 chr1 15210 15211 rs78601809 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,ENSEMBL,GMI,SSMP, 2 G,T, 3050.000000,1958.000000, 0.609026,0.390974, 585 chr1 15710 15711 rs202113635 0 + G G A/G genomic single by-frequency 0.053488 0.154541 intron exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 3.025000,106.974998, 0.027500,0.972500, 585 chr1 15773 15774 rs374029747 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 585 chr1 15776 15777 rs568149713 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, 585 chr1 15903 15903 rs557514207 0 + - - -/C genomic insertion unknown 0 0 ncRNA between 1 2 1000GENOMES,SSIP, 2 -,C, 2799.000000,2209.000000, 0.558906,0.441094, 585 chr1 16808 16809 rs2758113 0 + C C C/G genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 4 ENSEMBL,HUMANGENOME_JCVI,SC_JCM,SC_SNP, 2 C,G, 6.000000,4.000000, 0.600000,0.400000, 585 chr1 16840 16841 rs62636368 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 BCMHGSC_JDW,BILGI_BIOE,CLINSEQ_SNP, 2 G,T, 474.000000,13.000000, 0.973306,0.026694, 585 chr1 16948 16949 rs199745162 0 + A A A/C genomic single unknown 0 0 near-gene-3,ncRNA exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 A,C, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 585 chr1 16956 16957 rs200658479 0 + G G G/T genomic single by-frequency 0.024687 0.108325 near-gene-3,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 G,T, 321.924988,4.075000, 0.987500,0.012500, 585 chr1 17019 17020 rs199740902 0 + G G A/G genomic single by-frequency 0.199688 0.244885 near-gene-3,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 31.950001,252.050003, 0.112500,0.887500, maf-5-some-pop,maf-5-all-pops 585 chr1 17221 17222 rs200978805 0 + A A A/G genomic single by-cluster,by-frequency 0.025662 0.110329 intron,near-gene-3 exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,SSMP, 2 A,G, 298.074005,3.926000, 0.987000,0.013000, 585 chr1 17384 17385 rs201535981 0 + G G A/G genomic single by-frequency 0.02955 0.117906 intron,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 3.990000,262.010010, 0.015000,0.985000, 585 chr1 17397 17398 rs200784459 0 + C C A/C genomic single by-cluster,by-frequency 0.13875 0.223883 intron,ncRNA exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,GMI, 2 A,C, 16.950001,209.050003, 0.075000,0.925000, maf-5-some-pop,maf-5-all-pops 585 chr1 17537 17538 rs200046632 0 + C C A/C genomic single by-cluster,by-frequency 0.36532 0.221814 intron,near-gene-5 exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,SSMP, 2 A,C, 50.986000,161.014008, 0.240500,0.759500, maf-5-some-pop,maf-5-all-pops 585 chr1 18848 18849 rs533090414 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 241.000000,4767.000000, 0.048123,0.951877, 585 chr1 33494 33495 rs75468675 0 + C C C/T genomic single by-frequency 0.5 0 unknown exact 1 1 ENSEMBL, 2 C,T, 6.000000,6.000000, 0.500000,0.500000, 585 chr1 33520 33521 rs76098219 0 + T T A/T genomic single by-frequency 0.5 0 unknown exact 1 1 ENSEMBL, 2 A,T, 8.000000,8.000000, 0.500000,0.500000, 585 chr1 47158 47159 rs540662756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 137.000000,4871.000000, 0.027356,0.972644, 585 chr1 49297 49298 rs200943160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,T, 3917.000000,1091.000000, 0.782149,0.217851, 585 chr1 49553 49554 rs539322794 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4692.000000,316.000000, 0.936901,0.063099, 585 chr1 51478 51479 rs116400033 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop,maf-5-all-pops 585 chr1 51761 51762 rs559190862 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 585 chr1 51764 51765 rs575564077 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 585 chr1 52237 52238 rs2691277 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP, 2 G,T, 4616.000000,392.000000, 0.921725,0.078275, 585 chr1 54489 54490 rs141149254 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 481.000000,4527.000000, 0.096046,0.903954, 585 chr1 54711 54712 rs552304420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 585 chr1 54712 54712 rs568927205 0 + - - -/TTTC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TTTC, 2104.000000,2904.000000, 0.420128,0.579872, 585 chr1 54715 54716 rs569128616 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 3560.000000,1448.000000, 0.710863,0.289137, 585 chr1 55163 55164 rs3091274 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,SC_JCM,SSMP, 2 A,C, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop,maf-5-all-pops 585 chr1 55325 55326 rs3107975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SC_JCM, 2 C,T, 230.000000,4778.000000, 0.045927,0.954073, 585 chr1 55544 55545 rs28396308 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,GMI,SSAHASNP,SSMP, 2 C,T, 3810.000000,1198.000000, 0.760783,0.239217, 585 chr1 57291 57292 rs201418760 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, 585 chr1 58813 58814 rs114420996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 546.000000,4462.000000, 0.109026,0.890974, maf-5-some-pop 585 chr1 59039 59040 rs62637815 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,TISHKOFF, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, 585 chr1 60350 60351 rs62637817 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 4733.000000,275.000000, 0.945088,0.054912, 585 chr1 61919 61920 rs62637820 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 585 chr1 62776 62777 rs528401309 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 3724.000000,1284.000000, 0.743610,0.256390, 585 chr1 63073 63074 rs202117496 0 + A A A/C genomic single by-frequency 0.032455 0.123184 unknown exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,C, 234.072998,3.927000, 0.983500,0.016500, 585 chr1 63092 63093 rs200092917 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, 585 chr1 63267 63268 rs75478250 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CLINSEQ_SNP,ENSEMBL,GMI, 2 C,T, 1768.000000,3240.000000, 0.353035,0.646965, maf-5-some-pop,maf-5-all-pops 585 chr1 63515 63516 rs201248921 0 + A A A/G genomic single by-frequency 0.363235 0.222885 unknown exact 1 1 CLINSEQ_SNP, 2 A,G, 98.995003,31.004999, 0.761500,0.238500, maf-5-some-pop,maf-5-all-pops 585 chr1 63526 63527 rs201336938 0 + T T C/T genomic single by-cluster,by-frequency 0.344875 0.231298 unknown exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,GMI, 2 C,T, 27.023001,94.976997, 0.221500,0.778500, maf-5-some-pop,maf-5-all-pops 585 chr1 63642 63643 rs202004563 0 + A A A/G genomic single by-cluster,by-frequency 0.0478 0.14702 unknown exact 1 NonIntegerChromCount 3 BILGI_BIOE,CLINSEQ_SNP,GMI, 2 A,G, 518.966003,13.034000, 0.975500,0.024500, 585 chr1 63670 63671 rs80011619 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop 585 chr1 63735 63738 rs201888535 0 + CTA CTA -/CTA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CTA, 1862.000000,3146.000000, 0.371805,0.628195, 585 chr1 64648 64649 rs181431124 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4956.000000,52.000000, 0.989617,0.010383, 585 chr1 64930 64931 rs62639104 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, 585 chr1 65973 65974 rs531923826 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 585 chr1 66218 66219 rs181028663 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4906.000000,102.000000, 0.979633,0.020367, 585 chr1 66380 66381 rs538833530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 55.000000,4953.000000, 0.010982,0.989018, 585 chr1 66435 66437 rs560481224 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TT, 133.000000,4875.000000, 0.026557,0.973442, 585 chr1 67180 67181 rs28503582 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,maf-5-all-pops 585 chr1 67630 67631 rs533896527 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, 585 chr1 68081 68082 rs367789441 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 169.000000,4839.000000, 0.033746,0.966254, 585 chr1 69269 69270 rs201219564 0 + A A A/G genomic single by-cluster,by-frequency 0.165587 0.235318 coding-synon exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,GMI,SSMP, 2 A,G, 32.759998,326.880005, 0.091091,0.908909, maf-5-some-pop,maf-5-all-pops 585 chr1 69427 69428 rs140739101 0 + T T G/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,NHLBI-ESP, 2 G,T, 95.000000,4913.000000, 0.018970,0.981030, 585 chr1 69510 69511 rs75062661 0 + A A A/G genomic single unknown 0 0 missense exact 1 NonIntegerChromCount 8 1000GENOMES,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,NHLBI-ESP,SSMP, 2 A,G, 23.069000,760.931030, 0.029425,0.970575, 585 chr1 69760 69761 rs200505207 0 + A A A/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,SSMP, 2 A,T, 4824.000000,184.000000, 0.963259,0.036741, 585 chr1 69896 69897 rs200676709 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 3446.000000,1562.000000, 0.688099,0.311901, 585 chr1 70316 70317 rs570011908 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 585 chr1 72525 72526 rs547237130 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, 585 chr1 73489 73490 rs558384541 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 585 chr1 74789 74790 rs13328700 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,G, 4819.000000,189.000000, 0.962260,0.037740, 585 chr1 74791 74792 rs13328684 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, 585 chr1 76837 76838 rs563953605 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 280.000000,4728.000000, 0.055911,0.944089, 585 chr1 76853 76854 rs367666799 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, 585 chr1 77762 77763 rs557457745 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 585 chr1 77865 77866 rs563593912 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, 585 chr1 77873 77874 rs62641297 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,EVA-GONL, 2 A,G, 274.000000,4734.000000, 0.054713,0.945288, 585 chr1 78941 78942 rs372315362 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 585 chr1 79136 79137 rs143777184 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4801.000000,207.000000, 0.958666,0.041334, 585 chr1 81259 81260 rs571136476 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, 585 chr1 81586 81587 rs536406113 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, 585 chr1 82162 82163 rs139113303 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 585 chr1 82608 82609 rs149189449 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, 585 chr1 83083 83084 rs181193408 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,T, 4608.000000,400.000000, 0.920128,0.079872, 585 chr1 83513 83514 rs201754587 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 3143.000000,1865.000000, 0.627596,0.372404, 585 chr1 83770 83771 rs189906733 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 585 chr1 84138 84139 rs183605470 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4928.000000,80.000000, 0.984026,0.015974, 585 chr1 84617 84618 rs576633512 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 585 chr1 85891 85892 rs147185795 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 585 chr1 86027 86028 rs114608975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 585 chr1 86064 86065 rs116504101 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 585 chr1 86191 86192 rs548281277 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, 585 chr1 86302 86303 rs2949417 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_JCM,SSMP, 2 G,T, 114.000000,4.000000, 0.966102,0.033898, 585 chr1 86330 86331 rs115209712 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 585 chr1 87359 87360 rs180907504 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, 585 chr1 87408 87409 rs139490478 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, 585 chr1 87646 87647 rs146836579 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 344.000000,4664.000000, 0.068690,0.931310, 585 chr1 88168 88169 rs940550 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3509.000000,1499.000000, 0.700679,0.299321, maf-5-some-pop 585 chr1 88171 88172 rs940551 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TSC-CSHL, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,maf-5-all-pops 585 chr1 88176 88177 rs143215837 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 168.000000,4840.000000, 0.033546,0.966454, 585 chr1 88315 88316 rs113759966 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, 585 chr1 88337 88338 rs55700207 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV, 2 A,G, 471.000000,4537.000000, 0.094049,0.905950, maf-5-some-pop 585 chr1 88709 88710 rs186575039 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4818.000000,190.000000, 0.962061,0.037939, 585 chr1 88793 88794 rs571366469 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 98.000000,4910.000000, 0.019569,0.980431, 585 chr1 89598 89599 rs375955515 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,T, 4818.000000,190.000000, 0.962061,0.037939, 585 chr1 89945 89946 rs138808727 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4394.000000,614.000000, 0.877396,0.122604, 585 chr1 90050 90051 rs7545609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, 585 chr1 91189 91190 rs143856811 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, 585 chr1 91420 91421 rs28619159 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SSAHASNP,SSMP, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, 585 chr1 91514 91515 rs376723915 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 2871.000000,2137.000000, 0.573283,0.426717, 585 chr1 91535 91536 rs6702460 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,SSMP, 2 G,T, 2901.000000,2107.000000, 0.579273,0.420727, maf-5-some-pop,maf-5-all-pops 585 chr1 91551 91551 rs375085441 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4687.000000,321.000000, 0.935903,0.064097, 585 chr1 91580 91581 rs151118460 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 2122.000000,2886.000000, 0.423722,0.576278, 585 chr1 92632 92633 rs149776517 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 585 chr1 92857 92858 rs147061536 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4332.000000,676.000000, 0.865016,0.134984, 585 chr1 95439 95440 rs544194668 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4251.000000,757.000000, 0.848842,0.151158, 585 chr1 98324 98325 rs531515788 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 585 chr1 99686 99687 rs139153227 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, 585 chr1 100857 100858 rs368741663 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, 585 chr1 104280 104281 rs576842010 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 193.000000,4815.000000, 0.038538,0.961462, 585 chr1 108029 108030 rs550285297 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4849.000000,159.000000, 0.968251,0.031749, 585 chr1 108229 108230 rs563817866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, 585 chr1 115745 115746 rs147538909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 585 chr1 118629 118630 rs374543768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 585 chr1 122871 122872 rs62642125 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 G,T, 1180.000000,3828.000000, 0.235623,0.764377, 585 chr1 125270 125271 rs377100675 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 1118.000000,3890.000000, 0.223243,0.776757, 585 chr1 129010 129013 rs377161483 0 + ATG ATG -/ATG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,ATG, 2446.000000,2562.000000, 0.488419,0.511581, 586 chr1 134132 134133 rs551491511 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 586 chr1 135162 135163 rs374499151 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, 586 chr1 135202 135203 rs147502335 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 586 chr1 135981 135982 rs62642131 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP, 2 A,G, 562.000000,4446.000000, 0.112220,0.887780, 586 chr1 138592 138593 rs375595668 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BILGI_BIOE, 2 G,T, 4782.000000,226.000000, 0.954872,0.045128, 586 chr1 158005 158006 rs371474651 0 + A A A/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 A,T, 3588.000000,1420.000000, 0.716454,0.283546, 586 chr1 173051 173052 rs564576411 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 532.000000,4476.000000, 0.106230,0.893770, 586 chr1 232448 232449 rs144169752 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,GMI,SSMP, 2 A,G, 595.000000,4413.000000, 0.118810,0.881190, 586 chr1 233472 233473 rs112455420 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop 586 chr1 237504 237505 rs367639380 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, 586 chr1 241368 241369 rs11490246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,ENSEMBL,GMI,SC_SNP,SSMP, 2 C,T, 0.000000,5008.000000, 0.000000,1.000000, 586 chr1 251627 251628 rs72502741 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,BL,GMI,LUNTER,SSMP, 2 -,C, 697.000000,4311.000000, 0.139177,0.860823, 586 chr1 251662 251663 rs201015357 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4203.000000,805.000000, 0.839257,0.160743, 586 chr1 252357 252358 rs11489922 0 - G G C/T genomic single by-frequency 0.429688 0.173817 unknown exact 1 3 BCMHGSC_JDW,ENSEMBL,SC_SNP, 2 C,T, 11.000000,5.000000, 0.687500,0.312500, 586 chr1 254185 254186 rs148663102 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 586 chr1 255632 255633 rs375136935 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4647.000000,361.000000, 0.927915,0.072085, 586 chr1 255923 255923 rs199745078 0 + - - -/TC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TC, 4314.000000,694.000000, 0.861422,0.138578, 586 chr1 256022 256023 rs554693544 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4697.000000,311.000000, 0.937899,0.062101, 586 chr1 256497 256498 rs369556846 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 A,G, 4698.000000,310.000000, 0.938099,0.061901, 586 chr1 256585 256586 rs140435168 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 82.000000,4926.000000, 0.016374,0.983626, 586 chr1 258136 258137 rs370718922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 587 chr1 267227 267230 rs374780253 0 + TAA TAA -/TAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,TAA, 200.000000,4808.000000, 0.039936,0.960064, 587 chr1 353407 353408 rs2527593 0 - G G C/T genomic single by-cluster,by-frequency,by-2hit-2allele 0.444444 0.157135 unknown exact 1 7 BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI,SC_JCM,SC_SNP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 6.000000,12.000000, 0.333333,0.666667, 587 chr1 362903 362904 rs541569731 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 154.000000,4854.000000, 0.030751,0.969249, 587 chr1 362904 362905 rs182870673 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 G,T, 633.000000,4375.000000, 0.126398,0.873602, 587 chr1 362906 362907 rs138802168 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 109.000000,4899.000000, 0.021765,0.978235, 587 chr1 363244 363244 rs572571697 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4905.000000,103.000000, 0.979433,0.020567, 588 chr1 521577 521578 rs368130516 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, 589 chr1 526735 526736 rs28863004 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,ILLUMINA,SSAHASNP, 2 C,G, 4348.000000,660.000000, 0.868211,0.131789, 589 chr1 526831 526832 rs192574259 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 589 chr1 526839 526840 rs60396226 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP, 2 C,T, 851.000000,4157.000000, 0.169928,0.830072, 589 chr1 527206 527207 rs112901516 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4877.000000,131.000000, 0.973842,0.026158, 589 chr1 529781 529782 rs144425991 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, 589 chr1 532008 532009 rs201982178 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 396.000000,4612.000000, 0.079074,0.920927, 589 chr1 532050 532051 rs184296032 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4864.000000,144.000000, 0.971246,0.028754, 589 chr1 532123 532124 rs575867421 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, 589 chr1 532325 532327 rs577455319 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 87.000000,4921.000000, 0.017372,0.982628, 589 chr1 532928 532929 rs12240002 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 C,T, 402.000000,4606.000000, 0.080272,0.919728, 589 chr1 533112 533113 rs375227545 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4541.000000,467.000000, 0.906749,0.093251, 589 chr1 533161 533162 rs112369404 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 589 chr1 533169 533170 rs114617477 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 589 chr1 533178 533179 rs111501994 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, 589 chr1 533196 533197 rs201080464 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4412.000000,596.000000, 0.880990,0.119010, 589 chr1 533197 533198 rs78497331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, 589 chr1 533205 533206 rs564920906 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 589 chr1 533290 533291 rs75693233 0 + G G A/G genomic single by-cluster,by-frequency 0.48 0.09798 unknown exact 1 2 ENSEMBL,SSMP, 2 A,G, 6.000000,4.000000, 0.600000,0.400000, 589 chr1 534114 534115 rs372070915 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, 589 chr1 534320 534321 rs536226227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, 589 chr1 535695 535696 rs151048542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 589 chr1 535958 535959 rs202206030 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, 589 chr1 536094 536095 rs189259765 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,MPI_MOLGEN, 2 C,T, 3014.000000,1994.000000, 0.601837,0.398163, 589 chr1 536365 536366 rs199993660 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 589 chr1 536815 536816 rs373360530 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, 589 chr1 540974 540975 rs80246094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 6.000000,114.000000, 0.050000,0.950000, maf-5-some-pop,maf-5-all-pops 589 chr1 541078 541079 rs548068956 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 589 chr1 543506 543507 rs61769263 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI, 2 C,T, 5.000000,5.000000, 0.500000,0.500000, 589 chr1 543635 543636 rs61769264 0 + G G A/G genomic single by-cluster,by-frequency 0.5 0 unknown exact 1 3 BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI, 2 A,G, 5.000000,5.000000, 0.500000,0.500000, 589 chr1 546646 546647 rs375803869 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, 589 chr1 546647 546648 rs556186494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, 589 chr1 546801 546802 rs113633859 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,BUSHMAN,GMI, 2 C,G, 1619.000000,3389.000000, 0.323283,0.676717, 589 chr1 546804 546805 rs61769283 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,GMI, 2 C,T, 1130.000000,3878.000000, 0.225639,0.774361, 589 chr1 559134 559135 rs202038446 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 G,T, 122.000000,4886.000000, 0.024361,0.975639, 589 chr1 559479 559480 rs578093669 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, 589 chr1 559984 559985 rs557203750 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 589 chr1 563115 563116 rs533118292 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 94.000000,4914.000000, 0.018770,0.981230, 589 chr1 564157 564158 rs529192661 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 589 chr1 564597 564598 rs6594028 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3820.000000,1188.000000, 0.762780,0.237220, 589 chr1 564620 564621 rs10458597 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.045009 0.143104 near-gene-5 exact 1 5 AFFY,BGI,KRIBB_YJKIM,SC_SNP,SSAHASNP, 2 C,T, 721.000000,17.000000, 0.976965,0.023035, maf-5-some-pop 589 chr1 564653 564654 rs147404388 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,GMI,PJP,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 589 chr1 564671 564672 rs564134240 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4947.000000,61.000000, 0.987819,0.012180, 589 chr1 564713 564714 rs563468890 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, 589 chr1 564861 564862 rs1988726 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BILGI_BIOE,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 260.000000,4748.000000, 0.051917,0.948083, 589 chr1 565135 565136 rs530783041 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 589 chr1 565264 565265 rs193303036 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, 589 chr1 565373 565374 rs9701779 0 + A A A/G genomic single unknown 0.075356 0.178884 near-gene-5 exact 1 5 BROAD,GMI,ILLUMINA,PERLEGEN,SC_JCM, 2 A,G, 392.000000,16.000000, 0.960784,0.039216, maf-5-some-pop 589 chr1 565405 565406 rs6594029 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 2800.000000,2208.000000, 0.559105,0.440895, 589 chr1 565432 565433 rs9701055 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BROAD,GMI,ILLUMINA,PERLEGEN,SC_JCM,SSAHASNP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 589 chr1 565463 565464 rs6594030 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 476.000000,4532.000000, 0.095048,0.904952, 589 chr1 565489 565490 rs7349153 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,PJP,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 470.000000,4538.000000, 0.093850,0.906150, 589 chr1 565507 565508 rs9283150 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, 589 chr1 565540 565541 rs6594031 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, 589 chr1 565585 565586 rs560045585 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 589 chr1 565590 565591 rs7416152 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, 589 chr1 565595 565596 rs568632519 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 589 chr1 565696 565697 rs3021087 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BROAD,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3585.000000,1423.000000, 0.715855,0.284145, 589 chr1 565727 565728 rs199661867 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,GMI, 2 A,C, 158.000000,4850.000000, 0.031549,0.968450, 589 chr1 565741 565742 rs535902969 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4678.000000,330.000000, 0.934105,0.065895, 589 chr1 565934 565935 rs55973403 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, 589 chr1 565936 565937 rs7417504 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, 589 chr1 566020 566021 rs6421778 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, 589 chr1 566023 566024 rs6421779 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, 589 chr1 566129 566130 rs1832730 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 3801.000000,1207.000000, 0.758986,0.241014, 589 chr1 566322 566323 rs572007875 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 589 chr1 566572 566573 rs1856866 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3113.000000,1895.000000, 0.621605,0.378395, 589 chr1 566770 566771 rs2185536 0 + C C C/T genomic single by-cluster,by-frequency,by-2hit-2allele 0.091951 0.193702 unknown exact 1 11 BCM-HGSC-SUB,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 20.000000,394.000000, 0.048309,0.951691, maf-5-some-pop,maf-5-all-pops 589 chr1 566791 566792 rs9283152 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 323.000000,4685.000000, 0.064497,0.935503, 589 chr1 566869 566870 rs528621909 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 295.000000,4713.000000, 0.058906,0.941094, 589 chr1 566874 566875 rs2185539 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 589 chr1 566932 566933 rs113120793 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,TISHKOFF, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, 589 chr1 566959 566960 rs2185540 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 102.000000,4906.000000, 0.020367,0.979633, 589 chr1 567091 567092 rs9326622 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 589 chr1 567118 567119 rs9283153 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,C, 4874.000000,134.000000, 0.973243,0.026757, 589 chr1 567375 567376 rs542830355 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, 589 chr1 567539 567540 rs146275198 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,PJP, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 589 chr1 567605 567606 rs567334121 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4787.000000,221.000000, 0.955871,0.044129, 589 chr1 567695 567696 rs367588992 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, 589 chr1 567696 567697 rs1972379 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, 589 chr1 567725 567726 rs560688216 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 237.000000,4771.000000, 0.047324,0.952676, 589 chr1 567766 567767 rs368638493 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 589 chr1 567806 567807 rs2853819 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 1001.000000,4007.000000, 0.199880,0.800120, 589 chr1 567824 567825 rs554944061 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4755.000000,253.000000, 0.949481,0.050519, 589 chr1 567866 567867 rs2000096 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_SNP,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4235.000000,773.000000, 0.845647,0.154353, 589 chr1 567939 567940 rs144892194 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,PJP, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, 589 chr1 568023 568024 rs61769294 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 A,G, 4680.000000,328.000000, 0.934505,0.065495, 589 chr1 568213 568214 rs373437560 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, 589 chr1 568255 568256 rs4098612 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 4080.000000,928.000000, 0.814696,0.185304, 589 chr1 568307 568308 rs568242848 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 589 chr1 568321 568322 rs9699599 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BROAD,SC_JCM,SSAHASNP,TISHKOFF, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 589 chr1 568411 568412 rs377573539 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 917.000000,4091.000000, 0.183107,0.816893, 589 chr1 568417 568418 rs559716105 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 589 chr1 568418 568419 rs3905037 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 589 chr1 568441 568442 rs7419218 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 355.000000,4653.000000, 0.070887,0.929113, 589 chr1 568450 568451 rs78032279 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,T, 4091.000000,917.000000, 0.816893,0.183107, 589 chr1 568630 568631 rs76167418 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ENSEMBL,PJP,SSMP, 2 C,T, 4044.000000,964.000000, 0.807508,0.192492, 589 chr1 568643 568644 rs78639846 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ENSEMBL,PJP,SSMP, 2 C,T, 961.000000,4047.000000, 0.191893,0.808107, 589 chr1 568669 568670 rs75654607 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,T, 954.000000,4054.000000, 0.190495,0.809505, 589 chr1 568708 568709 rs148329687 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4059.000000,949.000000, 0.810503,0.189497, 589 chr1 568796 568797 rs140714337 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,PJP, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, 589 chr1 568799 568800 rs375217967 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 A,G, 390.000000,4618.000000, 0.077875,0.922125, 589 chr1 568822 568823 rs561728059 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, 589 chr1 568823 568824 rs527519500 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, 589 chr1 569093 569094 rs9283154 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2891.000000,2117.000000, 0.577276,0.422724, 589 chr1 569132 569133 rs571509850 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 589 chr1 569166 569167 rs577955094 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 75.000000,4933.000000, 0.014976,0.985024, 589 chr1 569203 569204 rs112660509 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,TISHKOFF, 2 C,T, 1702.000000,3306.000000, 0.339856,0.660144, 589 chr1 569225 569226 rs6594032 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,C, 2312.000000,2696.000000, 0.461661,0.538339, 589 chr1 569249 569250 rs149524355 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,GMI,PJP, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, 589 chr1 569266 569267 rs6650105 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2338.000000,2670.000000, 0.466853,0.533147, 589 chr1 569590 569591 rs560715817 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 589 chr1 569762 569763 rs562534476 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4938.000000,70.000000, 0.986022,0.013978, 589 chr1 569769 569770 rs7520428 0 + A A A/G genomic single by-cluster,by-frequency,by-2hit-2allele 0.140322 0.224657 near-gene-5 exact 1 7 BROAD,HGSV,ILLUMINA,PERLEGEN,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 499.000000,41.000000, 0.924074,0.075926, maf-5-some-pop 589 chr1 569802 569803 rs2096045 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.031738 0.121908 unknown exact 1 9 COMPLETE_GENOMICS,GMI,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 122.000000,2.000000, 0.983871,0.016129, 589 chr1 569932 569933 rs368347679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, 589 chr1 570075 570076 rs9326625 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,GMI,SC_SNP,WUGSC_SSAHASNP, 2 C,T, 184.000000,4824.000000, 0.036741,0.963259, 589 chr1 570093 570094 rs7339962 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,BROAD,COMPLETE_GENOMICS,GMI,SC_SNP,WUGSC_SSAHASNP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 589 chr1 570096 570097 rs2298012 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,GMI,SC_SNP,WUGSC_SSAHASNP,YUSUKE, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, 589 chr1 570177 570178 rs9326626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,SSMP, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 589 chr1 570637 570638 rs368120791 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 300.000000,4708.000000, 0.059904,0.940096, 589 chr1 573769 573770 rs557680320 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 589 chr1 573819 573820 rs577824455 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 589 chr1 574149 574150 rs542690860 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 71.000000,4937.000000, 0.014177,0.985823, 589 chr1 574150 574151 rs74047006 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,ILLUMINA-UK, 2 A,T, 4624.000000,384.000000, 0.923323,0.076677, 589 chr1 574349 574350 rs372776175 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 589 chr1 583482 583483 rs577801075 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4441.000000,567.000000, 0.886781,0.113219, 589 chr1 598832 598833 rs113167131 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 C,T, 537.000000,4471.000000, 0.107228,0.892772, 589 chr1 600317 600318 rs536144132 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, 589 chr1 600477 600478 rs114979547 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 20.000000,98.000000, 0.169492,0.830508, maf-5-some-pop,maf-5-all-pops 589 chr1 600494 600495 rs147241137 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, 589 chr1 600522 600523 rs558809206 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 589 chr1 601582 601583 rs79221329 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 589 chr1 603514 603515 rs190065153 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 287.000000,4721.000000, 0.057308,0.942692, 589 chr1 603515 603516 rs182349900 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 287.000000,4721.000000, 0.057308,0.942692, 589 chr1 604069 604070 rs560619932 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 589 chr1 604229 604229 rs556776674 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,G, 4818.000000,190.000000, 0.962061,0.037939, 589 chr1 604298 604299 rs111824286 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 C,G, 4798.000000,210.000000, 0.958067,0.041933, 589 chr1 604351 604352 rs369953380 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, 589 chr1 612688 612691 rs201365517 0 + CTC CTC -/CTC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,SSMP, 2 -,CTC, 442.000000,4566.000000, 0.088259,0.911741, 589 chr1 618385 618386 rs202025951 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, 589 chr1 618462 618463 rs114496243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 67.000000,171.000000, 0.281513,0.718487, maf-5-some-pop,maf-5-all-pops 589 chr1 625198 625199 rs568513310 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 589 chr1 625370 625371 rs527774202 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 589 chr1 625391 625392 rs202179828 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 373.000000,4635.000000, 0.074481,0.925519, 589 chr1 625413 625414 rs113952007 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 589 chr1 636284 636285 rs545945172 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, 589 chr1 636974 636975 rs144572927 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 198.000000,4810.000000, 0.039537,0.960463, 589 chr1 645604 645605 rs185127847 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 75.000000,4933.000000, 0.014976,0.985024, 589 chr1 649191 649192 rs201942322 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,T, 4322.000000,686.000000, 0.863019,0.136981, 589 chr1 652827 652827 rs543051265 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4950.000000,58.000000, 0.988419,0.011582, 590 chr1 662413 662414 rs371628865 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, 590 chr1 662621 662622 rs61769339 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 739.000000,4269.000000, 0.147564,0.852436, 590 chr1 666248 666249 rs200188737 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, 590 chr1 668373 668374 rs138476838 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 431.000000,4577.000000, 0.086062,0.913938, 590 chr1 668921 668922 rs536998559 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 668980 668981 rs199878213 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, 590 chr1 669053 669054 rs542688526 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 590 chr1 669054 669055 rs553160734 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 590 chr1 669589 669590 rs78732431 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 G,T, 4572.000000,436.000000, 0.912939,0.087061, 590 chr1 669745 669746 rs536934690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, 590 chr1 670709 670710 rs553339263 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, 590 chr1 670711 670712 rs573209121 0 + A A A/C genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,C, 4761.000000,247.000000, 0.950679,0.049321, 590 chr1 671809 671810 rs544842419 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, 590 chr1 672155 672156 rs559349748 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 590 chr1 672329 672330 rs530588710 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 620.000000,4388.000000, 0.123802,0.876198, 590 chr1 672593 672594 rs202013849 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, 590 chr1 672939 672940 rs544698705 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 205.000000,4803.000000, 0.040934,0.959065, 590 chr1 673230 673231 rs529937446 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,T, 120.000000,4888.000000, 0.023962,0.976038, 590 chr1 674210 674211 rs546906063 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 590 chr1 676117 676118 rs146067153 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BL, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, 590 chr1 691543 691544 rs201222573 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,T, 2103.000000,2905.000000, 0.419928,0.580072, 590 chr1 691544 691545 rs548729314 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 691567 691571 rs566250387 0 + ACAG ACAG -/ACAG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,ACAG, 134.000000,4874.000000, 0.026757,0.973243, 590 chr1 692794 692795 rs530212009 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 949.000000,4059.000000, 0.189497,0.810503, 590 chr1 693624 693625 rs190214723 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, 590 chr1 693730 693731 rs12238997 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, 590 chr1 693822 693823 rs61769351 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,GMI,SSMP, 2 C,G, 747.000000,4261.000000, 0.149161,0.850839, 590 chr1 700027 700028 rs537409722 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 701298 701299 rs553919012 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4887.000000,121.000000, 0.975839,0.024161, 590 chr1 701746 701747 rs561985667 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 590 chr1 701779 701783 rs201234755 0 + AATA AATA -/AATA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,AATA, 113.000000,4895.000000, 0.022564,0.977436, 590 chr1 701834 701835 rs189800799 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, 590 chr1 702957 702958 rs535793062 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 150.000000,4858.000000, 0.029952,0.970048, 590 chr1 703941 703942 rs548160064 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 341.000000,4667.000000, 0.068091,0.931909, 590 chr1 704636 704637 rs142559957 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 237.000000,4771.000000, 0.047324,0.952676, 590 chr1 705451 705452 rs113340103 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,T, 343.000000,4665.000000, 0.068490,0.931510, 590 chr1 705880 705881 rs116763968 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, 590 chr1 705881 705882 rs72631875 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 590 chr1 706367 706368 rs55727773 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 3630.000000,1378.000000, 0.724840,0.275160, 590 chr1 706424 706425 rs529439608 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 590 chr1 706644 706645 rs148085246 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 4394.000000,614.000000, 0.877396,0.122604, 590 chr1 706777 706778 rs113462541 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,GMI,SSMP, 2 A,G, 2163.000000,2845.000000, 0.431909,0.568091, 590 chr1 707521 707522 rs371890604 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 648.000000,4360.000000, 0.129393,0.870607, 590 chr1 707885 707886 rs115229562 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 590 chr1 708604 708605 rs557003163 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 710087 710088 rs532928796 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 125.000000,4883.000000, 0.024960,0.975040, 590 chr1 710194 710195 rs149744429 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, 590 chr1 711309 711310 rs200531508 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,G, 369.000000,4639.000000, 0.073682,0.926318, 590 chr1 712546 712547 rs373285923 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 133.000000,4875.000000, 0.026557,0.973442, 590 chr1 712761 712762 rs12071806 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 G,T, 686.000000,4322.000000, 0.136981,0.863019, 590 chr1 713091 713092 rs4565649 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 590 chr1 713131 713131 rs200310424 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4876.000000,132.000000, 0.973642,0.026358, 590 chr1 713562 713563 rs4301583 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,SC_JCM,TISHKOFF, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 590 chr1 713697 713698 rs555211605 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 713976 713977 rs74512038 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,maf-5-all-pops 590 chr1 714018 714019 rs114983708 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop 590 chr1 714426 714427 rs12028261 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, 590 chr1 714438 714439 rs139182182 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, 590 chr1 715073 715074 rs11804379 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,CSHL-HAPMAP,ENSEMBL, 2 A,G, 4862.000000,146.000000, 0.970847,0.029153, 590 chr1 715204 715205 rs141090730 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4858.000000,150.000000, 0.970048,0.029952, 590 chr1 715264 715265 rs12184267 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 590 chr1 715366 715367 rs12184277 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 590 chr1 715924 715925 rs533430962 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 590 chr1 716628 716629 rs541813760 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 590 chr1 716977 716978 rs541163143 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 717473 717474 rs141784362 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,CLINSEQ_SNP,EVA-GONL, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 590 chr1 717626 717627 rs147384991 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4937.000000,71.000000, 0.985823,0.014177, 590 chr1 718385 718386 rs10900602 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,GMI,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 A,G, 320.000000,4688.000000, 0.063898,0.936102, 590 chr1 718504 718505 rs181440659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 590 chr1 719489 719489 rs201939756 0 + - - -/ATAAT genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,ATAAT, 4614.000000,394.000000, 0.921326,0.078674, 590 chr1 719913 719914 rs187772768 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4869.000000,139.000000, 0.972244,0.027756, 590 chr1 720380 720381 rs116801199 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 590 chr1 720582 720583 rs551231909 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 590 chr1 720796 720797 rs75530702 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BL,ENSEMBL,GMI,PJP,SSMP,TISHKOFF, 2 A,G, 4704.000000,304.000000, 0.939297,0.060703, 590 chr1 721104 721105 rs201616474 0 + A A -/A genomic deletion unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 -,A, 186.000000,4822.000000, 0.037141,0.962859, 590 chr1 721118 721119 rs115019173 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 721289 721290 rs12565286 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 590 chr1 721449 721450 rs2977675 0 - G G C/T genomic single by-cluster,by-frequency,by-hapmap 0.028579 0.116073 ncRNA exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,CSHL-HAPMAP,SC_JCM, 2 C,T, 551.880005,8.120000, 0.985500,0.014500, 590 chr1 721704 721705 rs151072073 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4894.000000,114.000000, 0.977236,0.022764, 590 chr1 721756 721757 rs189147642 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 141.000000,4867.000000, 0.028155,0.971845, 590 chr1 722364 722368 rs527807809 0 + ATTT ATTT -/ATTT genomic deletion unknown 0 0 ncRNA range 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,ATTT, 141.000000,4867.000000, 0.028155,0.971845, 590 chr1 722558 722559 rs150361918 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 187.000000,4821.000000, 0.037340,0.962660, 590 chr1 722602 722603 rs138029171 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 590 chr1 722669 722670 rs116030099 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 590 chr1 722979 722980 rs114222710 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 590 chr1 723306 723307 rs28659788 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 C,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 590 chr1 723738 723740 rs59776264 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,HGSV,LUNTER, 2 -,CT, 193.000000,4815.000000, 0.038538,0.961462, 590 chr1 723753 723761 rs373480363 0 + GAGAGAGG GAGAGAGG -/GAGAGAGG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GAGAGAGG, 96.000000,4912.000000, 0.019169,0.980831, 590 chr1 723798 723800 rs34882115 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,AG, 4012.000000,996.000000, 0.801118,0.198882, 590 chr1 723818 723819 rs11804171 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop 590 chr1 723890 723891 rs2977670 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 723917 723918 rs144434834 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 590 chr1 724102 724103 rs111533735 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, 590 chr1 724215 724215 rs558665036 0 + - - -/GGAAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,GGAAC, 4953.000000,55.000000, 0.989018,0.010982, 590 chr1 724299 724300 rs12069907 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, 590 chr1 724323 724324 rs28692873 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, 590 chr1 724516 724517 rs541235902 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 590 chr1 724814 724815 rs533926246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 590 chr1 724868 724869 rs12735556 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,GMI,SSAHASNP,SSMP, 2 A,C, 2704.000000,2304.000000, 0.539936,0.460064, 590 chr1 724881 724882 rs62653102 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,GMI, 2 C,T, 2405.000000,2603.000000, 0.480232,0.519768, 590 chr1 724882 724883 rs200283906 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 2405.000000,2603.000000, 0.480232,0.519768, 590 chr1 725180 725181 rs541223445 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 590 chr1 725195 725196 rs377099097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 725266 725267 rs12067227 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 G,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 725274 725275 rs111203396 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 590 chr1 725388 725389 rs375619475 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, 590 chr1 725400 725401 rs553642122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 590 chr1 725525 725526 rs376431891 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 590 chr1 725554 725555 rs578096639 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 590 chr1 726059 726060 rs574368764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 590 chr1 726793 726794 rs28454925 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, 590 chr1 726943 726944 rs3131979 0 - C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,GMI,HUMANGENOME_JCVI,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 727286 727288 rs376637250 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,SSIP,SSMP, 2 -,AG, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 727840 727841 rs116587930 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 590 chr1 728093 728094 rs558527005 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, 590 chr1 728241 728242 rs3131977 0 - C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 728680 728681 rs531916142 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 590 chr1 728950 728951 rs55744711 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,KRIBB_YJKIM, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, 590 chr1 729678 729679 rs4951859 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 1803.000000,3205.000000, 0.360024,0.639976, 590 chr1 729939 729940 rs143646113 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4873.000000,135.000000, 0.973043,0.026957, 590 chr1 729947 729948 rs2977656 0 - C C A/G genomic single by-cluster,by-frequency,by-hapmap 0.041744 0.13831 unknown exact 1 2 ILLUMINA,SC_JCM, 2 A,G, 9.000000,413.000000, 0.021327,0.978673, maf-5-some-pop 590 chr1 730086 730087 rs148120343 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 64.000000,4944.000000, 0.012780,0.987220, 590 chr1 730231 730232 rs146255828 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 590 chr1 730248 730249 rs138036075 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 590 chr1 730671 730672 rs560122379 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 590 chr1 731047 731048 rs548444285 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, 590 chr1 731598 731599 rs548381014 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 590 chr1 731715 731716 rs147576002 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 590 chr1 731716 731717 rs191317422 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 590 chr1 731717 731718 rs142557973 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 773.000000,4235.000000, 0.154353,0.845647, 590 chr1 731823 731824 rs539817107 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, 590 chr1 731848 731849 rs367556699 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, 590 chr1 731957 731958 rs535581815 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, 590 chr1 732029 732030 rs541276837 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4947.000000,61.000000, 0.987819,0.012180, 590 chr1 732031 732032 rs61770163 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,EVA-GONL,GMI, 2 A,C, 4229.000000,779.000000, 0.844449,0.155551, 590 chr1 732048 732049 rs578262389 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4861.000000,147.000000, 0.970647,0.029353, 590 chr1 732119 732120 rs114572157 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 590 chr1 732134 732134 rs201400700 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4937.000000,71.000000, 0.985823,0.014177, 590 chr1 732163 732164 rs138208096 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 108.000000,4900.000000, 0.021566,0.978435, 590 chr1 732214 732215 rs559238700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 590 chr1 732745 732746 rs142578063 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 590 chr1 732800 732801 rs144022023 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4733.000000,275.000000, 0.945088,0.054912, 590 chr1 732808 732809 rs12131618 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSAHASNP,SSMP, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, 590 chr1 733012 733013 rs4951860 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,WI_SSAHASNP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 590 chr1 733428 733429 rs367917297 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 590 chr1 733581 733582 rs199508236 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,LUNTER, 2 -,A, 86.000000,4922.000000, 0.017173,0.982827, 590 chr1 733651 733652 rs529193373 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 590 chr1 733894 733895 rs376492866 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, 590 chr1 734161 734162 rs145810134 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 590 chr1 734331 734332 rs112204126 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 590 chr1 734337 734338 rs184443961 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 102.000000,4906.000000, 0.020367,0.979633, 590 chr1 734339 734340 rs146623218 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, 590 chr1 734348 734349 rs141242758 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 764.000000,4244.000000, 0.152556,0.847444, 590 chr1 734382 734383 rs144952147 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 590 chr1 734490 734491 rs7518433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, 590 chr1 735137 735138 rs530188462 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 128.000000,4880.000000, 0.025559,0.974441, 590 chr1 735266 735267 rs532876432 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 129.000000,4879.000000, 0.025759,0.974241, 590 chr1 735346 735347 rs570873790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 590 chr1 735557 735558 rs569779319 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 95.000000,4913.000000, 0.018970,0.981030, 590 chr1 735681 735682 rs138174321 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 234.000000,4774.000000, 0.046725,0.953275, 590 chr1 735829 735830 rs377086198 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 590 chr1 735984 735985 rs12405651 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,CSHL-HAPMAP,SSMP, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, 590 chr1 736185 736186 rs147133636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 590 chr1 736248 736249 rs141197910 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4876.000000,132.000000, 0.973642,0.026358, 590 chr1 736288 736289 rs79010578 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 A,T, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop,maf-5-all-pops 590 chr1 736308 736309 rs189570545 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, 590 chr1 736375 736376 rs150029223 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 172.000000,4836.000000, 0.034345,0.965655, 590 chr1 736625 736626 rs4040690 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, 590 chr1 736744 736745 rs4040693 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 590 chr1 736848 736851 rs200840253 0 + GCT GCT -/GCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GCT, 110.000000,4898.000000, 0.021965,0.978035, 590 chr1 737082 737083 rs114937396 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 590 chr1 737124 737125 rs151055642 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 129.000000,4879.000000, 0.025759,0.974241, 590 chr1 737129 737130 rs4040699 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TSC-CSHL, 2 A,C, 163.000000,4845.000000, 0.032548,0.967452, 590 chr1 737262 737263 rs369986014 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 590 chr1 737406 737411 rs199962889 0 + TTAAT TTAAT -/TTAAT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTAAT, 232.000000,4776.000000, 0.046326,0.953674, 590 chr1 738474 738475 rs370667023 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 290.000000,4718.000000, 0.057907,0.942093, 590 chr1 738538 738539 rs147999235 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, 590 chr1 738755 738756 rs527495140 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 590 chr1 739009 739010 rs2488515 0 - T T A/G genomic single by-frequency,by-hapmap 0.032778 0.123752 unknown exact 1 2 SC_JCM,TSC-CSHL, 2 A,G, 177.000000,3.000000, 0.983333,0.016667, 590 chr1 739116 739117 rs140206562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 590 chr1 739209 739210 rs141443091 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,GMI, 2 A,G, 1143.000000,3865.000000, 0.228235,0.771765, 590 chr1 739507 739508 rs139264486 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4923.000000,85.000000, 0.983027,0.016973, 590 chr1 739564 739565 rs11485757 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SC_SNP,TISHKOFF, 2 C,G, 358.000000,4650.000000, 0.071486,0.928514, 590 chr1 739607 739608 rs145267859 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 590 chr1 739989 739990 rs571946818 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 590 chr1 740242 740243 rs11488375 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, 590 chr1 740284 740285 rs193160839 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 590 chr1 740415 740416 rs11488376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 590 chr1 740577 740578 rs7521650 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, 590 chr1 740856 740857 rs12082473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ENSEMBL,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 590 chr1 740965 740966 rs555377056 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 130.000000,4878.000000, 0.025959,0.974042, 590 chr1 741266 741267 rs201849753 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CLINSEQ_SNP,GMI,SSMP, 2 C,T, 260.000000,4748.000000, 0.051917,0.948083, 590 chr1 741557 741558 rs201052459 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 590 chr1 741743 741744 rs565303121 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 590 chr1 741832 741833 rs148581628 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 590 chr1 741840 741841 rs142821459 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, 590 chr1 741849 741850 rs150613421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, 590 chr1 742593 742594 rs551006412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, 590 chr1 742812 742813 rs112573343 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4492.000000,516.000000, 0.896965,0.103035, 590 chr1 742989 742990 rs202009397 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, 590 chr1 743020 743021 rs3964475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TSC-CSHL, 2 C,T, 538.000000,4470.000000, 0.107428,0.892572, 590 chr1 743071 743072 rs200751313 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,C, 4026.000000,982.000000, 0.803914,0.196086, 590 chr1 743419 743420 rs201920982 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, 590 chr1 743636 743637 rs138563743 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 210.000000,4798.000000, 0.041933,0.958067, 590 chr1 744075 744076 rs142181107 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4864.000000,144.000000, 0.971246,0.028754, 590 chr1 744656 744657 rs553916433 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 590 chr1 745020 745021 rs138351431 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4277.000000,731.000000, 0.854034,0.145966, 590 chr1 745130 745131 rs538233096 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 745642 745643 rs200097270 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 746037 746039 rs563991472 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AC, 56.000000,4952.000000, 0.011182,0.988818, 590 chr1 746188 746189 rs139221807 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4525.000000,483.000000, 0.903554,0.096446, 590 chr1 746211 746211 rs201075335 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,EVA-GONL, 2 -,G, 4897.000000,111.000000, 0.977835,0.022164, 590 chr1 746632 746644 rs545986140 0 + TTTATGGAAATG TTTATGGAAATG -/TTTATGGAAATG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTTATGGAAATG, 142.000000,4866.000000, 0.028355,0.971645, 590 chr1 746726 746727 rs144595511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 590 chr1 746896 746897 rs140286345 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 590 chr1 747039 747040 rs531539579 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4902.000000,106.000000, 0.978834,0.021166, 590 chr1 747112 747113 rs548147551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 590 chr1 747753 747755 rs200313238 0 + GC GC -/GC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,GC, 129.000000,4879.000000, 0.025759,0.974241, 590 chr1 747763 747764 rs139314670 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 590 chr1 748060 748061 rs147452334 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 224.000000,4784.000000, 0.044728,0.955272, 590 chr1 748278 748279 rs12184331 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4371.000000,637.000000, 0.872804,0.127196, 590 chr1 748444 748445 rs183774475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 590 chr1 748445 748446 rs188307914 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 590 chr1 748486 748487 rs184255501 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 590 chr1 748877 748878 rs143214544 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 G,T, 1848.000000,3160.000000, 0.369010,0.630990, 590 chr1 749516 749517 rs199789068 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, 590 chr1 749543 749544 rs368068490 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 590 chr1 749563 749564 rs200711167 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 4895.000000,113.000000, 0.977436,0.022564, 590 chr1 749643 749644 rs75909375 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,MPI_MOLGEN,SSMP, 2 C,T, 921.000000,4087.000000, 0.183906,0.816094, 590 chr1 749688 749689 rs75448039 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 G,T, 766.000000,4242.000000, 0.152955,0.847045, 590 chr1 749706 749707 rs528695989 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4719.000000,289.000000, 0.942292,0.057708, 590 chr1 749757 749758 rs4399101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HGSV,SC_JCM, 2 C,T, 1933.000000,3075.000000, 0.385982,0.614018, 590 chr1 749759 749760 rs12045157 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HGSV,SC_SNP, 2 C,G, 1933.000000,3075.000000, 0.385982,0.614018, 590 chr1 749963 749963 rs529266287 0 + - - -/AA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AA, 1181.000000,3827.000000, 0.235823,0.764177, 590 chr1 750054 750055 rs11240771 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ENSEMBL,GMI,HGSV,ILLUMINA-UK,SC_SNP, 2 C,T, 900.000000,4108.000000, 0.179712,0.820288, 590 chr1 750114 750115 rs557565171 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 590 chr1 750189 750190 rs573971885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 590 chr1 751342 751343 rs28544273 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BILGI_BIOE,GMI,SSAHASNP,SSMP, 2 A,T, 1215.000000,3793.000000, 0.242612,0.757388, 590 chr1 751484 751485 rs147115274 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, 590 chr1 751488 751488 rs200141114 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,A, 3831.000000,1177.000000, 0.764976,0.235024, 590 chr1 751499 751499 rs202218372 0 + - - -/AAT/AT genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 3 -,AAT,AT, 4921.000000,5.000000,82.000000, 0.982628,0.000998,0.016374, 590 chr1 751755 751756 rs143225517 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 1213.000000,3795.000000, 0.242212,0.757788, 590 chr1 752241 752242 rs12090487 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 A,T, 344.000000,4664.000000, 0.068690,0.931310, 590 chr1 752307 752308 rs201062411 0 + T T -/T genomic deletion unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,T, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 752477 752478 rs146277091 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 752509 752510 rs372296167 0 + A A -/A genomic deletion unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 108.000000,4900.000000, 0.021566,0.978435, 590 chr1 752592 752593 rs372531941 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 G,T, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 752616 752617 rs149886465 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 753473 753474 rs2073814 0 - C C C/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,ILLUMINA-UK,SC_JCM,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 754062 754063 rs12184312 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 G,T, 4893.000000,115.000000, 0.977037,0.022963, 590 chr1 754104 754105 rs12184325 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, 590 chr1 754120 754121 rs12184335 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 G,T, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 754162 754163 rs12184336 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 C,T, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 754210 754211 rs12184313 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP,SSMP, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop,maf-5-all-pops 590 chr1 754428 754429 rs114339855 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop 590 chr1 754628 754629 rs10454459 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4869.000000,139.000000, 0.972244,0.027756, 590 chr1 754670 754671 rs10454460 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, 590 chr1 755273 755274 rs78408995 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 590 chr1 755298 755299 rs533744812 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,G, 114.000000,4894.000000, 0.022764,0.977236, 590 chr1 755774 755775 rs3131965 0 - A A C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 9.000000,418.000000, 0.021077,0.978923, 590 chr1 755867 755868 rs75492222 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, 590 chr1 755886 755887 rs3131964 0 - C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 755889 755890 rs3115858 0 - A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 755935 755936 rs543858600 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 65.000000,4943.000000, 0.012979,0.987021, 590 chr1 756256 756257 rs200129875 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 3113.000000,1895.000000, 0.621605,0.378395, 590 chr1 756263 756264 rs528746615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 3802.000000,1206.000000, 0.759185,0.240815, 590 chr1 756266 756267 rs551793372 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 71.000000,4937.000000, 0.014177,0.985823, 590 chr1 756267 756268 rs12567639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,SSAHASNP, 2 A,G, 3387.000000,1621.000000, 0.676318,0.323682, 590 chr1 756303 756304 rs11240772 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, 590 chr1 756377 756378 rs549844831 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 1446.000000,3562.000000, 0.288738,0.711262, 590 chr1 756379 756380 rs3131963 0 - T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 756433 756434 rs61768170 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,GMI,SSMP, 2 C,G, 944.000000,4064.000000, 0.188498,0.811502, 590 chr1 756780 756781 rs75189095 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 590 chr1 756785 756786 rs116028335 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 590 chr1 756837 756838 rs77239421 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4893.000000,115.000000, 0.977037,0.022963, 590 chr1 757102 757103 rs76779543 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF, 2 C,T, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop,maf-5-all-pops 590 chr1 757119 757120 rs77598327 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 590 chr1 757690 757691 rs74045212 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,SSMP, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 590 chr1 757733 757734 rs4951929 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SSMP,WI_SSAHASNP, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops 590 chr1 757877 757878 rs11240775 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 A,C, 4876.000000,132.000000, 0.973642,0.026358, 590 chr1 757935 757936 rs4951862 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,maf-5-all-pops 590 chr1 758140 758141 rs77042389 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,maf-5-all-pops 590 chr1 758273 758274 rs539139305 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 178.000000,4830.000000, 0.035543,0.964457, 590 chr1 758448 758449 rs551474487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 758504 758508 rs201161609 0 + CTAA CTAA -/CTAA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CTAA, 56.000000,4952.000000, 0.011182,0.988818, 590 chr1 758663 758664 rs575422796 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 758769 758770 rs7554265 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF,WI_SSAHASNP, 2 A,C, 178.000000,4830.000000, 0.035543,0.964457, 590 chr1 758840 758841 rs115498424 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 5.000000,115.000000, 0.041667,0.958333, 590 chr1 759035 759036 rs114525117 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 759176 759177 rs147648542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 590 chr1 759292 759293 rs10157329 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,HGSV,SSMP,WUGSC_SSAHASNP, 2 A,T, 772.000000,4236.000000, 0.154153,0.845847, 590 chr1 759617 759618 rs145371340 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 590 chr1 759836 759837 rs114111569 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 A,T, 3769.000000,1239.000000, 0.752596,0.247404, maf-5-some-pop,maf-5-all-pops 590 chr1 759969 759970 rs145098582 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 590 chr1 760299 760300 rs11564776 0 - A A C/T genomic single by-cluster,by-frequency 0.075356 0.178884 unknown exact 1 2 ILLUMINA,PERLEGEN, 2 C,T, 4.000000,98.000000, 0.039216,0.960784, maf-5-some-pop,maf-5-all-pops 590 chr1 760421 760422 rs143796259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, 590 chr1 760811 760815 rs200712425 0 + TCTT TCTT -/TCTT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,TCTT, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 760911 760912 rs1048488 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1332.000000,3676.000000, 0.265974,0.734026, maf-5-some-pop,maf-5-all-pops 590 chr1 760921 760922 rs3882068 0 + G G C/G genomic single by-cluster,by-frequency 0.067033 0.170362 unknown exact 1 2 PERLEGEN,TSC-CSHL, 2 C,G, 139.000000,5.000000, 0.965278,0.034722, 590 chr1 760997 760998 rs148828841 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 761057 761074 rs60637637 0 + CTGCTAGTACCTGCTGA CTGCTAGTACCTGCTGA -/CTGCTAGTACCTGCTGA genomic deletion unknown 0 0 near-gene-5 range 1 3 1000GENOMES,HGSV,LUNTER, 2 -,CTGCTAGTACCTGCTGA, 82.000000,4926.000000, 0.016374,0.983626, 590 chr1 761763 761764 rs144708130 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 761799 761800 rs1064272 0 - A A A/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 761957 761958 rs115523412 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 590 chr1 761957 761957 rs59038458 0 + - - -/T genomic insertion unknown 0 0 near-gene-5,ncRNA between 1 5 1000GENOMES,GMI,HGSV,LUNTER,PJP, 2 -,T, 3680.000000,1328.000000, 0.734824,0.265176, 590 chr1 762021 762022 rs186393233 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 1 1000GENOMES, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 590 chr1 762319 762320 rs75333668 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,EXOME_CHIP,GMI,ILLUMINA,SSMP, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, 590 chr1 762484 762485 rs148989274 0 + C C A/C genomic single unknown 0 0 near-gene-5,ncRNA exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 832.000000,4176.000000, 0.166134,0.833866, 590 chr1 762588 762589 rs71507461 0 + G G C/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops 590 chr1 762591 762592 rs71507462 0 + C C C/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 1244.000000,3764.000000, 0.248403,0.751597, 590 chr1 762600 762601 rs71507463 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,T, 3764.000000,1244.000000, 0.751597,0.248403, 590 chr1 762631 762632 rs3131948 0 + T T A/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 A,T, 3766.000000,1242.000000, 0.751997,0.248003, 590 chr1 762855 762856 rs142969342 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 226.000000,4782.000000, 0.045128,0.954872, 590 chr1 762931 762932 rs534930819 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, 590 chr1 763393 763394 rs369924889 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 3093.000000,1915.000000, 0.617612,0.382388, 590 chr1 764073 764074 rs139455147 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 590 chr1 764190 764191 rs7515915 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP,WI_SSAHASNP, 2 G,T, 1112.000000,3896.000000, 0.222045,0.777955, 590 chr1 764261 764263 rs200830836 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CA, 328.000000,4680.000000, 0.065495,0.934505, 590 chr1 765084 765088 rs201697576 0 + TTTG TTTG -/TTTG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,TTTG, 78.000000,4930.000000, 0.015575,0.984425, 590 chr1 765708 765709 rs542635833 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 765746 765747 rs374164145 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, 590 chr1 765947 765948 rs2519016 0 - C C A/G genomic single by-frequency,by-hapmap 0.204142 0.245758 intron exact 1 1 SC_JCM, 2 A,G, 345.000000,45.000000, 0.884615,0.115385, maf-5-some-pop 590 chr1 766006 766007 rs61768174 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,C, 4551.000000,457.000000, 0.908746,0.091254, 590 chr1 766104 766105 rs55784098 0 - T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,GMI,PJP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 766291 766292 rs116108736 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 590 chr1 767037 767038 rs12756876 0 + G G A/G genomic single by-frequency,by-hapmap 0.208118 0.246467 intron exact 1 1 SSAHASNP, 2 A,G, 21.000000,157.000000, 0.117978,0.882023, maf-5-some-pop,maf-5-all-pops 590 chr1 767069 767070 rs12741327 0 + A A A/G genomic single by-frequency,by-hapmap 0.142449 0.225683 intron exact 1 1 SSAHASNP, 2 A,G, 275.000000,23.000000, 0.922819,0.077181, maf-5-some-pop 590 chr1 767095 767096 rs115991721 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 590 chr1 767676 767677 rs150785412 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 590 chr1 767702 767703 rs28557077 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 590 chr1 767812 767813 rs114066716 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 590 chr1 768116 768116 rs376645387 0 + - - -/GTTTT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GTTTT, 1922.000000,3086.000000, 0.383786,0.616214, 590 chr1 768447 768448 rs12562034 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 961.000000,4047.000000, 0.191893,0.808107, maf-5-some-pop,maf-5-all-pops 590 chr1 768818 768819 rs12562811 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, 590 chr1 769138 769140 rs59306077 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,AT, 1168.000000,3840.000000, 0.233227,0.766773, 590 chr1 769222 769223 rs60320384 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop,maf-5-all-pops 590 chr1 769373 769374 rs555115897 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 590 chr1 769828 769829 rs2977607 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 10 1000GENOMES,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 4807.000000,201.000000,201.000000,4807.000000, 0.479932,0.020068,0.020068,0.479932, 590 chr1 769962 769963 rs7518545 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,PJP,SSMP,WI_SSAHASNP, 2 A,G, 919.000000,4089.000000, 0.183506,0.816494, 590 chr1 770084 770085 rs150344285 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 770376 770377 rs112563271 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 2 A,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 590 chr1 770734 770735 rs139531586 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 4666.000000,342.000000, 0.931709,0.068291, 590 chr1 770885 770886 rs371458725 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 847.000000,4161.000000, 0.169129,0.830871, 590 chr1 770919 770920 rs559608157 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 590 chr1 771409 771410 rs142008205 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,GMI,PJP,SSMP, 2 C,T, 2040.000000,2968.000000, 0.407348,0.592652, 590 chr1 771520 771521 rs559547836 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 771593 771594 rs6661456 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 590 chr1 771966 771967 rs59066358 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1048.000000,3960.000000, 0.209265,0.790735, 590 chr1 772027 772028 rs6700874 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 590 chr1 772436 772437 rs138499329 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 590 chr1 772926 772927 rs116390263 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 118.000000,2.000000, 0.983333,0.016667, 590 chr1 772954 772955 rs374046288 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 152.000000,4856.000000, 0.030351,0.969649, 590 chr1 773105 773106 rs115616822 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 590 chr1 773123 773124 rs142049927 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 590 chr1 773135 773136 rs146709693 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, 590 chr1 773168 773169 rs562871362 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 773475 773476 rs115359380 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 773502 773503 rs183122171 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 590 chr1 773537 773538 rs556537677 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 590 chr1 773633 773634 rs143914285 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4928.000000,80.000000, 0.984026,0.015974, 590 chr1 773836 773837 rs150596232 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4943.000000,65.000000, 0.987021,0.012979, 590 chr1 773997 773998 rs74045277 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 590 chr1 774013 774014 rs370146867 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 590 chr1 774017 774018 rs183293151 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 81.000000,4927.000000, 0.016174,0.983826, 590 chr1 774021 774022 rs368745189 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,T, 4927.000000,81.000000, 0.983826,0.016174, 590 chr1 774035 774036 rs116788021 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 590 chr1 774046 774047 rs12022420 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop 590 chr1 774178 774179 rs144056942 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, 590 chr1 774179 774180 rs527530291 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 774362 774363 rs12563150 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,GMI,SSMP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, 590 chr1 774546 774550 rs201117564 0 + GAGA GAGA -/GAGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,GAGA, 107.000000,4901.000000, 0.021366,0.978634, 590 chr1 774735 774736 rs28830877 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,C, 159.000000,4849.000000, 0.031749,0.968251, 590 chr1 774873 774874 rs28810152 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP, 2 A,C, 1694.000000,3314.000000, 0.338259,0.661741, 590 chr1 774922 774923 rs28769076 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 C,G, 4907.000000,101.000000, 0.979832,0.020168, 590 chr1 775124 775125 rs147281566 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, 590 chr1 775134 775135 rs138782671 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, 590 chr1 775144 775145 rs149522745 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4941.000000,67.000000, 0.986621,0.013379, 590 chr1 775180 775181 rs61768182 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, 590 chr1 775277 775278 rs143489794 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, 590 chr1 775565 775566 rs527480662 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 775606 775607 rs111853383 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 72.000000,4936.000000, 0.014377,0.985623, 590 chr1 775636 775637 rs149681289 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 590 chr1 775894 775895 rs146355950 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 590 chr1 776063 776064 rs150416940 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 590 chr1 776111 776112 rs114498757 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 590 chr1 776464 776465 rs115048839 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 776498 776499 rs148598925 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 590 chr1 776545 776546 rs12124819 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop 590 chr1 776813 776814 rs147757531 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 777081 777082 rs141779525 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WARNICH_LAB, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 777121 777122 rs2980319 0 - A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 777231 777232 rs112618790 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, 590 chr1 777236 777237 rs142665498 0 + C C A/C genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 66.000000,4942.000000, 0.013179,0.986821, 590 chr1 777455 777456 rs183307028 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 590 chr1 777512 777513 rs532656528 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 590 chr1 777635 777636 rs529246218 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 778302 778302 rs112119688 0 + - - -/CT genomic insertion unknown 0 0 intron,ncRNA between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,CT, 471.000000,4537.000000, 0.094050,0.905950, 590 chr1 778744 778745 rs1055606 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,LEE,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop,maf-5-all-pops 590 chr1 779285 779286 rs149978434 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 590 chr1 779310 779312 rs80302052 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,GA, 227.000000,4781.000000, 0.045327,0.954673, 590 chr1 779797 779797 rs201580474 0 + - - -/CTCC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CTCC, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 780161 780162 rs114226235 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 590 chr1 780190 780191 rs376861944 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, 590 chr1 780228 780229 rs12565032 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,GMI,JMKIDD_LAB,SSMP, 2 C,T, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 590 chr1 780255 780256 rs56978077 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,maf-5-all-pops 590 chr1 780347 780351 rs202219272 0 + TTAA TTAA -/TTAA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TTAA, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 780396 780397 rs141175086 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 590 chr1 780558 780559 rs143527977 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 266.000000,4742.000000, 0.053115,0.946885, 590 chr1 780781 780782 rs373747779 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, 590 chr1 780784 780785 rs2977612 0 - T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 781057 781058 rs60652745 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,LUNTER,TISHKOFF, 2 -,C, 202.000000,4806.000000, 0.040335,0.959665, 590 chr1 781380 781381 rs59460514 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 590 chr1 781539 781540 rs56220497 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 590 chr1 781576 781577 rs148585719 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 590 chr1 781641 781642 rs141187081 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 781642 781643 rs143710653 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, 590 chr1 781699 781700 rs11800923 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,SSMP,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 590 chr1 781760 781761 rs138670202 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, 590 chr1 781844 781845 rs61768199 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,G, 4577.000000,431.000000, 0.913938,0.086062, 590 chr1 782224 782225 rs115304982 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 590 chr1 782395 782396 rs141548377 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 782469 782470 rs76135949 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,maf-5-all-pops 590 chr1 782527 782528 rs77016203 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 266.000000,4742.000000, 0.053115,0.946885, 590 chr1 782676 782677 rs140041012 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 G,T, 4644.000000,364.000000, 0.927316,0.072684, 590 chr1 782682 782683 rs143563025 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 103.000000,4905.000000, 0.020567,0.979433, 590 chr1 782980 782981 rs6594026 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3516.000000,1492.000000, 0.702077,0.297923, maf-5-some-pop,maf-5-all-pops 590 chr1 783070 783071 rs142849724 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 590 chr1 783303 783304 rs2980295 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,CSHL-HAPMAP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 590 chr1 783317 783318 rs6686696 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,G, 4091.000000,917.000000, 0.816893,0.183107, 590 chr1 783756 783757 rs141993323 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 783761 783762 rs369089251 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 784022 784023 rs17160939 0 + A A A/G genomic single by-cluster,by-frequency,by-hapmap 0.085909 0.188611 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 1274.000000,60.000000, 0.955023,0.044978, maf-5-some-pop 590 chr1 784366 784367 rs145218976 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 590 chr1 784370 784371 rs147651556 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 784750 784751 rs6678592 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 590 chr1 785139 785140 rs114777415 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 785339 785340 rs138919996 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4781.000000,227.000000, 0.954673,0.045327, 590 chr1 785502 785503 rs115636977 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 590 chr1 786022 786023 rs115208257 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4930.000000,78.000000, 0.984425,0.015575, 590 chr1 786029 786030 rs561919248 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4916.000000,92.000000, 0.981629,0.018371, 591 chr1 786511 786512 rs550156706 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4603.000000,405.000000, 0.919129,0.080871, 591 chr1 786789 786790 rs201096953 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, 591 chr1 786791 786792 rs549237103 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4504.000000,504.000000, 0.899361,0.100639, 591 chr1 786795 786796 rs148833734 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4504.000000,504.000000, 0.899361,0.100639, 591 chr1 786809 786810 rs148319368 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 4089.000000,919.000000, 0.816494,0.183506, 591 chr1 786933 786934 rs572125368 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 203.000000,4805.000000, 0.040535,0.959465, 591 chr1 786986 786987 rs190704807 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 786994 786995 rs61768202 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,G, 1111.000000,3897.000000, 0.221845,0.778155, 591 chr1 787083 787083 rs376433631 0 + - - -/GGATACATCTTGCGTAATGA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GGATACATCTTGCGTAATGA, 4672.000000,336.000000, 0.932907,0.067093, 591 chr1 787134 787135 rs28753393 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 A,G, 733.000000,4275.000000, 0.146366,0.853634, 591 chr1 787150 787151 rs2519065 0 - G G C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 107.000000,11.000000, 0.906780,0.093220, maf-5-some-pop,maf-5-all-pops 591 chr1 787172 787173 rs115093905 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 225.000000,13.000000, 0.945378,0.054622, maf-5-some-pop,maf-5-all-pops 591 chr1 787184 787185 rs56327836 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,PJP,SSMP, 2 A,G, 3206.000000,1802.000000, 0.640176,0.359824, 591 chr1 787204 787205 rs55693913 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 591 chr1 787261 787262 rs56108613 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,G, 1238.000000,3770.000000, 0.247204,0.752796, maf-5-some-pop,maf-5-all-pops 591 chr1 788003 788004 rs115290438 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 591 chr1 788036 788037 rs114653362 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 591 chr1 788594 788595 rs139049437 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, 591 chr1 788712 788713 rs2980306 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 C,T, 3139.000000,1869.000000, 0.626797,0.373203, 591 chr1 788947 788948 rs56183242 0 + G G C/G genomic single by-frequency 0.48 0.09798 intron,ncRNA exact 1 2 ENSEMBL,HGSV, 2 C,G, 6.000000,4.000000, 0.600000,0.400000, 591 chr1 789143 789144 rs373293973 0 + G G C/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,SSMP, 2 C,G, 946.000000,4062.000000, 0.188898,0.811102, 591 chr1 789513 789514 rs200509509 0 + A A -/A genomic deletion unknown 0 0 ncRNA exact 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,A, 1130.000000,3878.000000, 0.225639,0.774361, 591 chr1 789882 789883 rs113186454 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 790048 790049 rs74045280 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, 591 chr1 790187 790188 rs74045281 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 591 chr1 790380 790381 rs147035796 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 591 chr1 790464 790465 rs61768207 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,maf-5-all-pops 591 chr1 790666 790667 rs116753918 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 591 chr1 790859 790860 rs377289156 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 790983 790984 rs6699310 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BCM_SSAHASNP,BUSHMAN,TISHKOFF, 2 C,G, 241.000000,4767.000000, 0.048123,0.951877, 591 chr1 791035 791036 rs116019130 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, 591 chr1 791190 791191 rs111818025 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,MPI_MOLGEN,SSMP,TISHKOFF, 2 A,G, 1100.000000,3908.000000, 0.219649,0.780351, 591 chr1 791314 791315 rs116928318 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 591 chr1 791327 791328 rs74877941 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop,maf-5-all-pops 591 chr1 791419 791420 rs145618960 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 791622 791623 rs114300377 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4898.000000,110.000000, 0.978035,0.021965, 591 chr1 791714 791715 rs144771804 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 591 chr1 791852 791853 rs6684487 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 591 chr1 791986 791987 rs77103542 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, 591 chr1 792262 792263 rs1044922 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LEE,PJP,SC_JCM,SEQUENOM,SSMP,WI_SSAHASNP, 2 A,G, 1072.000000,3936.000000, 0.214058,0.785942, maf-5-some-pop,maf-5-all-pops 591 chr1 792800 792801 rs551581928 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 793144 793145 rs534761347 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 1558.000000,3450.000000, 0.311102,0.688898, 591 chr1 793428 793429 rs200956863 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,T, 2107.000000,2901.000000, 0.420727,0.579273, 591 chr1 793447 793448 rs545158789 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 591 chr1 793629 793630 rs551597489 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 591 chr1 793726 793727 rs116352281 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 591 chr1 793921 793922 rs145538528 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 122.000000,4886.000000, 0.024361,0.975639, 591 chr1 794102 794103 rs181953950 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 591 chr1 794150 794151 rs148796366 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 591 chr1 794330 794331 rs11805266 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 591 chr1 794331 794332 rs12127425 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 582.000000,4426.000000, 0.116214,0.883786, 591 chr1 794373 794374 rs116146680 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 591 chr1 794615 794616 rs7518333 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 267.000000,4741.000000, 0.053315,0.946685, 591 chr1 794622 794623 rs7547353 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,WI_SSAHASNP, 2 G,T, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop,maf-5-all-pops 591 chr1 794704 794705 rs11804425 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,CSHL-HAPMAP,TISHKOFF, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, 591 chr1 794777 794778 rs142686126 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 591 chr1 794873 794874 rs146966553 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, 591 chr1 795221 795222 rs12131377 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SC_SNP,SSMP, 2 C,G, 4659.000000,349.000000, 0.930312,0.069688, 591 chr1 795413 795414 rs3131935 0 - T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,CSHL-HAPMAP,GMI,SC_JCM,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 591 chr1 795419 795420 rs139541943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 591 chr1 795752 795753 rs146592146 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 591 chr1 795823 795824 rs112896657 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 591 chr1 795987 795988 rs59380221 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop,maf-5-all-pops 591 chr1 796099 796100 rs12132398 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, 591 chr1 796374 796375 rs12083781 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SC_SNP, 2 C,T, 959.000000,4049.000000, 0.191494,0.808506, maf-5-some-pop,maf-5-all-pops 591 chr1 796726 796727 rs115637794 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 G,T, 50.000000,70.000000, 0.416667,0.583333, maf-5-some-pop,maf-5-all-pops 591 chr1 796766 796767 rs75932129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,PJP, 2 A,G, 2649.000000,2359.000000, 0.528954,0.471046, maf-5-some-pop 591 chr1 797036 797037 rs116099766 0 + G G A/G genomic single by-cluster,by-frequency,by-1000genomes 0.027169 0.113341 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 6.000000,112.000000, 0.050848,0.949153, maf-5-some-pop,maf-5-all-pops 591 chr1 797126 797130 rs140389426 0 + TAAT TAAT -/TAAT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TAAT, 341.000000,4667.000000, 0.068091,0.931909, 591 chr1 797280 797281 rs76631953 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 591 chr1 797324 797325 rs111739932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop 591 chr1 797439 797440 rs58013264 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,TISHKOFF, 2 C,T, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 591 chr1 797473 797474 rs200972937 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 G,T, 4169.000000,839.000000, 0.832468,0.167532, 591 chr1 797819 797820 rs115861588 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, 591 chr1 798025 798026 rs4951864 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop,maf-5-all-pops 591 chr1 798184 798185 rs138433656 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 591 chr1 798399 798400 rs10900604 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2952.000000,2056.000000, 0.589457,0.410543, 591 chr1 798429 798430 rs138382600 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 591 chr1 798800 798801 rs12132517 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,PERLEGEN,SC_SNP,SSAHASNP,SSMP, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 591 chr1 799078 799079 rs147406924 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 591 chr1 799462 799463 rs4245756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 591 chr1 799498 799499 rs147634896 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, 591 chr1 799769 799770 rs56737117 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 591 chr1 799878 799879 rs149363311 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 591 chr1 800006 800007 rs6681049 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop,maf-5-all-pops 591 chr1 800192 800193 rs143609865 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4945.000000,63.000000, 0.987420,0.012580, 591 chr1 800382 800383 rs4951931 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 743.000000,4265.000000, 0.148363,0.851637, 591 chr1 800449 800450 rs148396197 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 800829 800830 rs116737746 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 591 chr1 800969 800970 rs145665953 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,G, 126.000000,4882.000000, 0.025160,0.974840, 591 chr1 801466 801467 rs61768212 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 967.000000,4041.000000, 0.193091,0.806909, 591 chr1 801540 801541 rs201830474 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 65.000000,4943.000000, 0.012979,0.987021, 591 chr1 801660 801661 rs12132974 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, 591 chr1 801679 801680 rs12134490 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,PJP,SC_SNP,SSMP, 2 A,C, 4676.000000,332.000000, 0.933706,0.066294, 591 chr1 801857 801858 rs17276806 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 591 chr1 801942 801943 rs7516866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1140.000000,3868.000000, 0.227636,0.772364, 591 chr1 801994 801995 rs7553084 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP,WI_SSAHASNP, 2 A,G, 2306.000000,2702.000000, 0.460463,0.539537, 591 chr1 802005 802006 rs9700144 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 C,T, 2265.000000,2743.000000, 0.452276,0.547724, 591 chr1 802025 802026 rs7553096 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP,WI_SSAHASNP, 2 A,G, 1938.000000,3070.000000, 0.386981,0.613019, 591 chr1 802081 802082 rs551959943 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, 591 chr1 802092 802093 rs7553197 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,WI_SSAHASNP, 2 A,G, 7.000000,3.000000, 0.700000,0.300000, 591 chr1 802190 802191 rs71507475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 9.000000,5.000000, 0.642857,0.357143, 591 chr1 802319 802320 rs12565310 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele 0.260355 0.249785 unknown exact 1 9 BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP, 2 A,G, 11.000000,2.000000, 0.846154,0.153846, 591 chr1 802346 802347 rs372425838 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, 591 chr1 802348 802349 rs376721195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, 591 chr1 802397 802398 rs111444624 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4674.000000,334.000000, 0.933307,0.066693, 591 chr1 802495 802496 rs10157494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4042.000000,966.000000, 0.807109,0.192891, 591 chr1 802855 802856 rs139867617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, 591 chr1 803431 803432 rs562238357 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 336.000000,4672.000000, 0.067093,0.932907, 591 chr1 803581 803582 rs17080269 0 - G G A/C cDNA single by-cluster,by-frequency,by-1000genomes 0.025381 0.109757 ncRNA exact 1 NonIntegerChromCount 3 1000GENOMES,SEQUENOM,SSMP, 2 A,C, 73.599998,110.400002, 0.400000,0.600000, maf-5-some-pop,maf-5-all-pops 591 chr1 804012 804013 rs117720955 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop,maf-5-all-pops 591 chr1 804014 804015 rs372466154 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,G, 4688.000000,320.000000, 0.936102,0.063898, 591 chr1 804106 804107 rs534659898 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 313.000000,4695.000000, 0.062500,0.937500, 591 chr1 804108 804109 rs551746123 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 313.000000,4695.000000, 0.062500,0.937500, 591 chr1 804114 804115 rs9725068 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 4587.000000,421.000000, 0.915935,0.084065, 591 chr1 804118 804119 rs537050962 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4686.000000,322.000000, 0.935703,0.064297, 591 chr1 804134 804135 rs553317956 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, 591 chr1 804151 804152 rs573479201 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 319.000000,4689.000000, 0.063698,0.936302, 591 chr1 804167 804168 rs545418299 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 324.000000,4684.000000, 0.064696,0.935304, 591 chr1 804179 804180 rs372180314 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,T, 4684.000000,324.000000, 0.935304,0.064696, 591 chr1 804187 804188 rs376110660 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 324.000000,4684.000000, 0.064696,0.935304, 591 chr1 804268 804269 rs145942548 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 93.000000,4915.000000, 0.018570,0.981430, 591 chr1 804305 804306 rs139794146 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 591 chr1 804539 804540 rs11240778 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop 591 chr1 804596 804597 rs532824320 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 704.000000,4304.000000, 0.140575,0.859425, 591 chr1 804758 804759 rs7526310 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4037.000000,971.000000, 0.806110,0.193890, 591 chr1 805108 805109 rs112221884 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 805497 805498 rs150739247 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 591 chr1 805555 805556 rs72631880 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,maf-5-all-pops 591 chr1 805966 805967 rs139376235 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 591 chr1 806110 806111 rs12088187 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 591 chr1 806522 806523 rs145431683 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 807038 807039 rs117292337 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 591 chr1 807302 807302 rs140363434 0 + - - -/T genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,GMI,PJP, 2 -,T, 1957.000000,3051.000000, 0.390775,0.609225, 591 chr1 807511 807512 rs10751454 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 807760 807761 rs4951932 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 5008.000000,0.000000, 1.000000,0.000000, 591 chr1 808024 808025 rs148111798 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 808222 808223 rs4951933 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP, 2 C,G, 2264.000000,2744.000000, 0.452077,0.547923, 591 chr1 808234 808235 rs150350890 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 591 chr1 808258 808259 rs137981877 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4604.000000,404.000000, 0.919329,0.080671, 591 chr1 808288 808289 rs113532475 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,T, 4105.000000,903.000000, 0.819688,0.180312, 591 chr1 808521 808522 rs6690115 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,BUSHMAN, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, 591 chr1 808526 808527 rs577246998 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, 591 chr1 808529 808530 rs189252564 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 591 chr1 808531 808532 rs192467702 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 591 chr1 808630 808631 rs11240779 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop 591 chr1 808921 808922 rs6594027 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 591 chr1 808927 808928 rs11240780 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2743.000000,2265.000000, 0.547724,0.452276, maf-5-some-pop,maf-5-all-pops 591 chr1 809236 809237 rs200657693 0 + C C C/G genomic single by-cluster,by-frequency 0.065688 0.168906 intron exact 1 NonIntegerChromCount 2 BILGI_BIOE,CLINSEQ_SNP, 2 C,G, 423.108002,14.892000, 0.966000,0.034000, 591 chr1 809260 809261 rs202083165 0 + C C C/T genomic single by-cluster,by-frequency 0.025662 0.110329 intron exact 1 NonIntegerChromCount 2 BILGI_BIOE,CLINSEQ_SNP, 2 C,T, 373.085999,4.914000, 0.987000,0.013000, 591 chr1 809699 809700 rs114598413 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 591 chr1 809875 809876 rs57181708 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop 591 chr1 810028 810029 rs116634681 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 810279 810280 rs113665055 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 810285 810286 rs28410559 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop,maf-5-all-pops 591 chr1 810647 810648 rs117446482 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 591 chr1 810671 810672 rs117830343 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 591 chr1 810738 810739 rs140958338 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 810779 810780 rs58686784 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 838.000000,4170.000000, 0.167332,0.832668, 591 chr1 810798 810799 rs148586655 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 591 chr1 810897 810900 rs201133668 0 + TTC TTC -/TTC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TTC, 82.000000,4926.000000, 0.016374,0.983626, 591 chr1 811135 811136 rs114224245 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,G, 139.000000,4869.000000, 0.027756,0.972244, 591 chr1 811235 811236 rs183361348 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 811734 811735 rs114617474 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 15.000000,225.000000, 0.062500,0.937500, maf-5-some-pop,maf-5-all-pops 591 chr1 812221 812222 rs146711189 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4923.000000,85.000000, 0.983027,0.016973, 591 chr1 812266 812267 rs7541694 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 812742 812743 rs6605064 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3956.000000,1052.000000, 0.789936,0.210064, maf-5-some-pop 591 chr1 812750 812751 rs4246500 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 591 chr1 812975 812976 rs28520213 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSAHASNP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, 591 chr1 813033 813034 rs59771807 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 591 chr1 813167 813168 rs142197506 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 591 chr1 813211 813212 rs139476558 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 591 chr1 813333 813334 rs144316595 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4941.000000,67.000000, 0.986621,0.013379, 591 chr1 813339 813340 rs115626508 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 591 chr1 813639 813640 rs4246499 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1506.000000,3502.000000, 0.300719,0.699281, 591 chr1 813962 813963 rs143343000 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 591 chr1 814027 814028 rs541279642 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 591 chr1 814044 814045 rs28483835 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,GMI,HGSV,SSAHASNP,SSMP, 2 C,T, 3945.000000,1063.000000, 0.787740,0.212260, 591 chr1 814214 814215 rs4468103 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BCMHGSC_JDW,GMI,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 3307.000000,1701.000000, 0.660343,0.339657, 591 chr1 814296 814297 rs72888851 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,GMI,SSMP, 2 A,T, 2419.000000,2589.000000, 0.483027,0.516973, 591 chr1 814299 814300 rs80022136 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,GMI,SSMP, 2 A,T, 2419.000000,2589.000000, 0.483027,0.516973, 591 chr1 814371 814375 rs150353320 0 + TGTT TGTT -/TGTT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,PJP, 2 -,TGTT, 2648.000000,2360.000000, 0.528754,0.471246, 591 chr1 814925 814926 rs75185188 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,ILLUMINA,SSMP, 2 A,G, 4889.000000,119.000000, 0.976238,0.023762, 591 chr1 814927 814928 rs193017223 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 88.000000,4920.000000, 0.017572,0.982428, 591 chr1 815137 815138 rs201597505 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 C,G, 4492.000000,516.000000, 0.896965,0.103035, 591 chr1 815138 815139 rs75056396 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, 591 chr1 815232 815233 rs373451052 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, 591 chr1 815233 815234 rs375607464 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,C, 108.000000,4900.000000, 0.021566,0.978435, 591 chr1 815420 815421 rs72888853 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,GMI, 2 C,T, 181.000000,4827.000000, 0.036142,0.963858, 591 chr1 815421 815422 rs535862693 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, 591 chr1 816215 816216 rs139209573 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 591 chr1 816257 816257 rs200555873 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4883.000000,125.000000, 0.975040,0.024960, 591 chr1 817233 817234 rs4970387 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 817594 817595 rs113580015 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 591 chr1 817966 817967 rs143695105 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 127.000000,4881.000000, 0.025359,0.974641, 591 chr1 818186 818187 rs117379192 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 60.000000,4948.000000, 0.011981,0.988019, 591 chr1 819105 819106 rs57185426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,BUSHMAN,ENSEMBL,GMI,HGSV,PJP,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 591 chr1 819121 819121 rs200893860 0 + - - -/AT genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER, 2 -,AT, 370.000000,4638.000000, 0.073882,0.926118, 591 chr1 819397 819398 rs61618401 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, 591 chr1 819772 819773 rs75003292 0 + T T A/T genomic single unknown 0.152778 0.230321 unknown exact 1 1 ENSEMBL, 2 A,T, 1.000000,11.000000, 0.083333,0.916667, 591 chr1 821325 821329 rs138860880 0 + CAGT CAGT -/CAGT genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,BL,GMI,PJP,SSMP, 2 -,CAGT, 2046.000000,2962.000000, 0.408546,0.591454, 591 chr1 821709 821710 rs562897305 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 821862 821881 rs571898054 0 + ACAGCAGCTGTGCTGTGTT ACAGCAGCTGTGCTGTGTT -/ACAGCAGCTGTGCTGTGTT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ACAGCAGCTGTGCTGTGTT, 85.000000,4923.000000, 0.016973,0.983027, 591 chr1 821886 821887 rs6677354 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 821925 821926 rs35660652 0 - C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 821947 821948 rs6671445 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 C,T, 4637.000000,371.000000, 0.925919,0.074081, maf-5-some-pop,maf-5-all-pops 591 chr1 822271 822272 rs116301497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 591 chr1 822380 822381 rs116091741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 591 chr1 823089 823090 rs145315181 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 823504 823505 rs13302980 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, 591 chr1 823542 823543 rs556083391 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 823789 823790 rs143626389 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 591 chr1 823822 823824 rs566040758 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GA, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 823947 823948 rs565871206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 591 chr1 824397 824398 rs7538305 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,WI_SSAHASNP, 2 A,C, 4065.000000,943.000000, 0.811701,0.188299, 591 chr1 824533 824534 rs141372940 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 824592 824593 rs75926297 0 + C C A/C genomic single by-cluster,by-frequency 0.375 0.216506 unknown exact 1 4 ENSEMBL,GMI,MPI_MOLGEN,PJP, 2 A,C, 9.000000,3.000000, 0.750000,0.250000, 591 chr1 824690 824691 rs75026264 0 + G G A/G genomic single by-cluster,by-frequency 0.375 0.216506 unknown exact 1 6 BL,COMPLETE_GENOMICS,ENSEMBL,GMI,MPI_MOLGEN,PJP, 2 A,G, 12.000000,4.000000, 0.750000,0.250000, 591 chr1 824693 824694 rs78484413 0 + G G A/G genomic single by-cluster,by-frequency 0.489796 0.070696 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,GMI, 2 A,G, 6.000000,8.000000, 0.428571,0.571429, 591 chr1 824708 824709 rs75988466 0 + A A A/C genomic single by-frequency 0.375 0.216506 unknown exact 1 4 BL,ENSEMBL,GMI,PJP, 2 A,C, 9.000000,3.000000, 0.750000,0.250000, 591 chr1 824837 824838 rs79872378 0 + C C A/C genomic single by-cluster,by-frequency 0.459184 0.136902 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,GMI, 2 A,C, 9.000000,5.000000, 0.642857,0.357143, 591 chr1 824844 824845 rs74714520 0 + G G G/T genomic single by-cluster,by-frequency 0.489796 0.070696 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,GMI, 2 G,T, 6.000000,8.000000, 0.428571,0.571429, 591 chr1 824947 824948 rs79544309 0 + C C C/T genomic single by-frequency 0.444444 0.157135 unknown exact 1 3 ENSEMBL,GMI,PJP, 2 C,T, 8.000000,4.000000, 0.666667,0.333333, 591 chr1 825124 825125 rs58233623 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,C, 71.000000,4937.000000, 0.014177,0.985823, 591 chr1 825563 825564 rs536845741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 825826 825826 rs369620271 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,SSMP, 2 -,A, 1011.000000,3997.000000, 0.201877,0.798123, 591 chr1 826134 826135 rs565374833 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 826509 826510 rs114967681 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 94.000000,4914.000000, 0.018770,0.981230, 591 chr1 827256 827257 rs140964025 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 591 chr1 827260 827261 rs6703274 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 591 chr1 827266 827267 rs2879698 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 529.000000,4479.000000, 0.105631,0.894369, 591 chr1 827276 827277 rs4246498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4658.000000,350.000000, 0.930112,0.069888, 591 chr1 827330 827331 rs111910870 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 591 chr1 827712 827712 rs200199951 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 828165 828166 rs13303117 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 3904.000000,1104.000000, 0.779553,0.220447, 591 chr1 828174 828175 rs145350987 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 591 chr1 828467 828468 rs147656405 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 591 chr1 828668 828669 rs143274363 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4921.000000,87.000000, 0.982628,0.017372, 591 chr1 828739 828740 rs28541977 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SSAHASNP, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 591 chr1 828882 828883 rs55745762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop,maf-5-all-pops 591 chr1 829105 829106 rs144931816 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, 591 chr1 829220 829221 rs532186568 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 591 chr1 829332 829333 rs9778019 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, 591 chr1 829470 829471 rs141808817 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 591 chr1 829636 829637 rs4437820 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 447.000000,4561.000000, 0.089257,0.910743, 591 chr1 829666 829667 rs7542092 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 A,C, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 591 chr1 830180 830181 rs28444699 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP, 2 A,G, 1546.000000,3462.000000, 0.308706,0.691294, 591 chr1 830358 830359 rs147496775 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 591 chr1 830402 830403 rs140198156 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 591 chr1 830454 830455 rs7535252 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, 591 chr1 830777 830778 rs111952597 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 830781 830782 rs549205911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 830782 830783 rs111436366 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 G,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 830784 830785 rs535278004 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 831026 831027 rs372366328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 591 chr1 831319 831320 rs556151501 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 79.000000,4929.000000, 0.015775,0.984225, 591 chr1 831908 831909 rs9697642 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1760.000000,3248.000000, 0.351438,0.648562, maf-5-some-pop,maf-5-all-pops 591 chr1 832065 832066 rs9697380 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 3327.000000,1681.000000, 0.664337,0.335663, 591 chr1 832111 832112 rs9697725 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3327.000000,1681.000000, 0.664337,0.335663, 591 chr1 832177 832178 rs13302934 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 A,G, 1681.000000,3327.000000, 0.335663,0.664337, 591 chr1 832358 832359 rs9697294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4558.000000,450.000000, 0.910144,0.089856, 591 chr1 832359 832360 rs138451736 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 591 chr1 832808 832809 rs147513871 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 832917 832918 rs28765502 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 591 chr1 833172 833172 rs113551494 0 + - - -/CGAA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,CGAA, 3359.000000,1649.000000, 0.670727,0.329273, 591 chr1 833222 833223 rs13303211 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 591 chr1 833301 833302 rs28752186 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, 591 chr1 833420 833421 rs115244455 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 591 chr1 833615 833616 rs139633901 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 591 chr1 833662 833663 rs28416910 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3402.000000,1606.000000, 0.679313,0.320687, 591 chr1 833823 833824 rs28484835 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,maf-5-all-pops 591 chr1 833926 833927 rs28593608 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 591 chr1 834055 834056 rs28482280 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4273.000000,735.000000, 0.853235,0.146765, 591 chr1 834197 834198 rs28385272 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 591 chr1 834262 834263 rs143031236 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 834491 834492 rs141250542 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 591 chr1 834613 834614 rs146951321 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 591 chr1 834752 834753 rs4411088 0 - G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 834831 834832 rs4411087 0 - G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 834955 834956 rs7518581 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop 591 chr1 834990 834991 rs116090519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 591 chr1 834998 834999 rs28570054 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1003.000000,4005.000000, 0.200280,0.799720, maf-5-some-pop,maf-5-all-pops 591 chr1 835241 835242 rs77180534 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 591 chr1 835490 835491 rs112672359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 591 chr1 835741 835742 rs114181266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 591 chr1 835806 835809 rs199507623 0 + GGA GGA -/GGA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GGA, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 835839 835840 rs28514991 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 591 chr1 836528 836529 rs28731045 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 591 chr1 836895 836896 rs28705752 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 591 chr1 836923 836924 rs72890788 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 832.000000,4176.000000, 0.166134,0.833866, maf-5-some-pop,maf-5-all-pops 591 chr1 837013 837014 rs116738141 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 837191 837192 rs57494724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop 591 chr1 837302 837303 rs115809836 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 837416 837417 rs77916225 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 591 chr1 837427 837428 rs111363967 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 591 chr1 837656 837657 rs149737509 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 86.000000,4922.000000, 0.017173,0.982827, 591 chr1 838259 838260 rs115305660 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 591 chr1 838329 838329 rs144685080 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 4145.000000,863.000000, 0.827676,0.172324, 591 chr1 838664 838665 rs28678693 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 591 chr1 838731 838732 rs28477624 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 591 chr1 838829 838830 rs77144359 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4901.000000,107.000000, 0.978634,0.021366, 591 chr1 838889 838890 rs28437697 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop 591 chr1 838915 838916 rs28539852 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop 591 chr1 838930 838931 rs7523690 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 591 chr1 839102 839103 rs28562941 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop,maf-5-all-pops 591 chr1 839460 839461 rs78238606 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop,maf-5-all-pops 591 chr1 839494 839495 rs113341842 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 591 chr1 839528 839529 rs114543760 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 591 chr1 839899 839900 rs551089240 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 151.000000,4857.000000, 0.030152,0.969848, 591 chr1 840038 840039 rs562868505 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 153.000000,4855.000000, 0.030551,0.969449, 591 chr1 840042 840043 rs531646385 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 591 chr1 840326 840327 rs28625089 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop,maf-5-all-pops 591 chr1 840352 840353 rs547535649 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 72.000000,4936.000000, 0.014377,0.985623, 591 chr1 841055 841056 rs79276155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop 591 chr1 841084 841085 rs1574243 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3324.000000,1684.000000, 0.663738,0.336262, maf-5-some-pop,maf-5-all-pops 591 chr1 841590 841591 rs114464092 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 591 chr1 842012 842013 rs7419119 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 G,T, 929.000000,4079.000000, 0.185503,0.814497, maf-5-some-pop,maf-5-all-pops 591 chr1 842057 842057 rs149865693 0 + - - -/AACTCAGCTGCCTCTCCCCTTC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,AACTCAGCTGCCTCTCCCCTTC, 2968.000000,2040.000000, 0.592652,0.407348, 591 chr1 842249 842250 rs148658266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 842361 842362 rs28540380 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3910.000000,1098.000000, 0.780751,0.219249, 591 chr1 842387 842387 rs200492131 0 + - - -/CC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CC, 4899.000000,109.000000, 0.978235,0.021765, 591 chr1 842388 842388 rs571161612 0 + - - -/CCGCAGGA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CCGCAGGA, 4899.000000,109.000000, 0.978235,0.021765, 591 chr1 842536 842537 rs59131686 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 842616 842617 rs111389427 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,PJP,SSMP, 2 -,A, 2117.000000,2891.000000, 0.422724,0.577276, 591 chr1 842651 842652 rs58666659 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 842824 842825 rs7519340 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 591 chr1 843365 843366 rs28440803 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, maf-5-some-pop 591 chr1 843404 843405 rs11516185 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops 591 chr1 843907 843908 rs528303756 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 591 chr1 843911 843912 rs551374321 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 591 chr1 843940 843940 rs199636838 0 + - - -/GAT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,GMI,LUNTER,WARNICH_LAB, 2 -,GAT, 593.000000,4415.000000, 0.118411,0.881589, 591 chr1 844299 844300 rs61769713 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,G, 915.000000,4093.000000, 0.182708,0.817292, maf-5-some-pop,maf-5-all-pops 591 chr1 844323 844324 rs61769714 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 3704.000000,1304.000000, 0.739617,0.260383, maf-5-some-pop,maf-5-all-pops 591 chr1 844342 844343 rs61769715 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2962.000000,2046.000000, 0.591454,0.408546, 591 chr1 844475 844476 rs368849675 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 1132.000000,3876.000000, 0.226038,0.773962, 591 chr1 844673 844674 rs528265132 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, 591 chr1 844812 844813 rs185360290 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 2083.000000,2925.000000, 0.415935,0.584065, 591 chr1 844889 844889 rs541630632 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,G, 4538.000000,470.000000, 0.906150,0.093850, 591 chr1 845125 845126 rs367857624 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 591 chr1 845272 845273 rs117039017 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop,maf-5-all-pops 591 chr1 845282 845283 rs7366404 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSMP,WI_SSAHASNP, 2 G,T, 1212.000000,3796.000000, 0.242013,0.757987, maf-5-some-pop,maf-5-all-pops 591 chr1 845310 845311 rs145001858 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 845508 845509 rs565071104 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 528.000000,4480.000000, 0.105431,0.894569, 591 chr1 845592 845593 rs191964043 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 591 chr1 845634 845635 rs117086422 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4214.000000,794.000000, 0.841454,0.158546, maf-5-some-pop,maf-5-all-pops 591 chr1 845937 845938 rs57760052 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP, 2 A,G, 1820.000000,3188.000000, 0.363419,0.636581, maf-5-some-pop,maf-5-all-pops 591 chr1 846077 846078 rs28612348 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop,maf-5-all-pops 591 chr1 846320 846321 rs115354484 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, 591 chr1 846397 846398 rs58781670 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1778.000000,3230.000000, 0.355032,0.644968, maf-5-some-pop,maf-5-all-pops 591 chr1 846464 846465 rs60454217 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop 591 chr1 846542 846543 rs79396034 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop,maf-5-all-pops 591 chr1 846585 846586 rs116802349 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 591 chr1 846807 846808 rs4475691 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3732.000000,1276.000000, 0.745208,0.254792, maf-5-some-pop,maf-5-all-pops 591 chr1 846853 846854 rs111957712 0 + G G A/G genomic single unknown 0 0 splice-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 591 chr1 846863 846864 rs950122 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 847040 847041 rs59518089 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 591 chr1 847140 847141 rs28546248 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSAHASNP, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 591 chr1 847296 847297 rs11507768 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,maf-5-all-pops 591 chr1 847490 847491 rs28407778 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,maf-5-all-pops 591 chr1 847657 847658 rs79776465 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 591 chr1 848022 848023 rs144407116 0 + C C A/C genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 848089 848090 rs4246505 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops 591 chr1 848094 848094 rs201096503 0 + - - -/GCCCCTCCT genomic insertion unknown 0 0 ncRNA between 1 1 1000GENOMES, 2 -,GCCCCTCCT, 4900.000000,108.000000, 0.978435,0.021566, 591 chr1 848296 848297 rs114642624 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 591 chr1 848357 848358 rs116301143 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 591 chr1 848444 848445 rs4626817 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,maf-5-all-pops 591 chr1 848455 848456 rs11507767 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3742.000000,1266.000000, 0.747204,0.252796, maf-5-some-pop,maf-5-all-pops 591 chr1 848848 848849 rs76923306 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 591 chr1 849439 849440 rs79376265 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop,maf-5-all-pops 591 chr1 849440 849441 rs28495095 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop,maf-5-all-pops 591 chr1 849523 849524 rs114473058 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 591 chr1 849552 849553 rs6685456 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 591 chr1 849812 849813 rs112774075 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 591 chr1 849863 849863 rs140295539 0 + - - -/ACTGCCCAGCTC genomic insertion unknown 0 0 ncRNA between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,ACTGCCCAGCTC, 3743.000000,1265.000000, 0.747404,0.252596, 591 chr1 849906 849907 rs57668572 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop,maf-5-all-pops 591 chr1 849997 849998 rs13303222 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 884.000000,4124.000000, 0.176518,0.823482, maf-5-some-pop,maf-5-all-pops 591 chr1 850061 850062 rs28723578 0 + A A A/T genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop,maf-5-all-pops 591 chr1 850114 850115 rs60824793 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 591 chr1 850122 850123 rs28622257 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4161.000000,847.000000, 0.830871,0.169129, 591 chr1 850217 850218 rs6664536 0 + T T A/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1729.000000,3279.000000, 0.345248,0.654752, 591 chr1 850323 850324 rs143945568 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, 591 chr1 850370 850371 rs6679046 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2460.000000,2548.000000, 0.491214,0.508786, maf-5-some-pop,maf-5-all-pops 591 chr1 850527 850528 rs114889920 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 591 chr1 850779 850780 rs6657440 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2202.000000,2806.000000, 0.439696,0.560304, maf-5-some-pop,maf-5-all-pops 591 chr1 851029 851030 rs79709025 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop,maf-5-all-pops 591 chr1 851189 851190 rs28609852 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops 591 chr1 851203 851204 rs28552953 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 591 chr1 851389 851390 rs72631889 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 591 chr1 851753 851754 rs545743734 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 851755 851756 rs556146321 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 591 chr1 851760 851761 rs541951052 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 591 chr1 851765 851766 rs527930265 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 591 chr1 852062 852063 rs28436996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 591 chr1 852132 852133 rs7518702 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1358.000000,3650.000000, 0.271166,0.728834, maf-5-some-pop,maf-5-all-pops 591 chr1 852442 852443 rs7531543 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,C, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop,maf-5-all-pops 591 chr1 852501 852502 rs116263168 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 591 chr1 852516 852517 rs115083420 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 591 chr1 852649 852650 rs2272758 0 - G G A/C/G/T genomic single unknown 0 0 ncRNA exact 1 SingleClassQuadAllelic 4 1000GENOMES,GMI,JMKIDD_LAB,YUSUKE, 4 A,C,G,T, 237.000000,4771.000000,4771.000000,237.000000, 0.023662,0.476338,0.476338,0.023662, maf-5-some-pop,maf-5-all-pops 591 chr1 852663 852664 rs28605311 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4137.000000,871.000000, 0.826078,0.173922, maf-5-some-pop,maf-5-all-pops 591 chr1 852757 852758 rs4970462 0 - G G C/G genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 852874 852875 rs13303369 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2533.000000,2475.000000, 0.505791,0.494209, maf-5-some-pop,maf-5-all-pops 591 chr1 853088 853089 rs78738176 0 - G G C/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 591 chr1 853129 853130 rs112599122 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,maf-5-all-pops 591 chr1 853266 853267 rs112944197 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4617.000000,391.000000, 0.921925,0.078075, maf-5-some-pop,maf-5-all-pops 591 chr1 853487 853488 rs77644389 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop 591 chr1 853953 853954 rs1806509 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 2482.000000,2526.000000, 0.495607,0.504393, maf-5-some-pop 591 chr1 854167 854168 rs79188446 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop,maf-5-all-pops 591 chr1 854249 854250 rs7537756 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3928.000000,1080.000000, 0.784345,0.215655, maf-5-some-pop,maf-5-all-pops 591 chr1 854428 854429 rs72902552 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 591 chr1 854507 854508 rs111797808 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 591 chr1 854776 854777 rs13303019 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1693.000000,3315.000000, 0.338059,0.661941, maf-5-some-pop,maf-5-all-pops 591 chr1 854977 854978 rs13303057 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 591 chr1 855074 855075 rs6673914 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1722.000000,3286.000000, 0.343850,0.656150, maf-5-some-pop,maf-5-all-pops 591 chr1 855162 855163 rs143596056 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 855167 855168 rs78128413 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 801.000000,4207.000000, 0.159944,0.840056, maf-5-some-pop,maf-5-all-pops 591 chr1 855251 855252 rs115439722 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 591 chr1 855358 855359 rs113648919 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 591 chr1 855635 855638 rs77712898 0 + CTT CTT -/CTT genomic deletion unknown 0 0 near-gene-5 range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CTT, 306.000000,4702.000000, 0.061102,0.938898, 591 chr1 855773 855774 rs77595185 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 591 chr1 855877 855878 rs117282503 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 591 chr1 855948 855949 rs77568453 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 591 chr1 856040 856041 rs61769717 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 831.000000,4177.000000, 0.165935,0.834065, maf-5-some-pop,maf-5-all-pops 591 chr1 856041 856042 rs115560414 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 591 chr1 856098 856099 rs28534711 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP, 2 G,T, 1757.000000,3251.000000, 0.350839,0.649161, maf-5-some-pop,maf-5-all-pops 591 chr1 856107 856108 rs28742275 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3251.000000,1757.000000, 0.649161,0.350839, maf-5-some-pop,maf-5-all-pops 591 chr1 856328 856329 rs7414599 0 + C C C/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4094.000000,914.000000, 0.817492,0.182508, maf-5-some-pop,maf-5-all-pops 591 chr1 856351 856352 rs75421909 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 591 chr1 856475 856476 rs4040605 0 + A A A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 591 chr1 856513 856514 rs530879139 0 + C C -/C genomic deletion unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 -,C, 106.000000,4902.000000, 0.021166,0.978834, 591 chr1 856582 856583 rs141671872 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 591 chr1 856998 856999 rs115003957 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,maf-5-all-pops 591 chr1 857176 857177 rs28409649 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1308.000000,3700.000000, 0.261182,0.738818, maf-5-some-pop,maf-5-all-pops 591 chr1 857318 857318 rs144110716 0 + - - -/GAGT genomic insertion unknown 0 0 ncRNA between 1 2 1000GENOMES,LUNTER, 2 -,GAGT, 4710.000000,298.000000, 0.940495,0.059505, 591 chr1 857442 857443 rs56663360 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop,maf-5-all-pops 591 chr1 857652 857653 rs59192718 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 591 chr1 857727 857728 rs6689107 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 591 chr1 857827 857828 rs6694982 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop 591 chr1 858148 858149 rs77520260 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop,maf-5-all-pops 591 chr1 859205 859206 rs188534988 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 591 chr1 859334 859335 rs576651754 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 198.000000,4810.000000, 0.039537,0.960463, 591 chr1 859369 859370 rs542192573 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 78.000000,4930.000000, 0.015575,0.984425, 591 chr1 859403 859404 rs71509444 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 C,G, 1596.000000,3412.000000, 0.318690,0.681310, 591 chr1 859684 859685 rs111572704 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 837.000000,4171.000000, 0.167133,0.832867, 591 chr1 859689 859690 rs71509445 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,HUMANGENOME_JCVI,SSMP, 2 C,G, 1541.000000,3467.000000, 0.307708,0.692292, 591 chr1 859700 859701 rs71509446 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 1541.000000,3467.000000, 0.307708,0.692292, 591 chr1 859912 859913 rs112703963 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCM-HGSC-SUB,SSMP, 2 A,G, 1253.000000,3755.000000, 0.250200,0.749800, 591 chr1 860415 860416 rs61464428 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 591 chr1 860460 860461 rs57465118 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSMP, 2 A,G, 3417.000000,1591.000000, 0.682308,0.317692, maf-5-some-pop 591 chr1 860503 860504 rs78033073 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop,maf-5-all-pops 591 chr1 860520 860521 rs57924093 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP, 2 A,C, 3403.000000,1605.000000, 0.679513,0.320487, maf-5-some-pop 591 chr1 860687 860688 rs60837925 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSMP, 2 A,G, 2530.000000,2478.000000, 0.505192,0.494808, maf-5-some-pop,maf-5-all-pops 591 chr1 860795 860799 rs558665183 0 + TGCG TGCG -/TGCG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,TGCG, 3430.000000,1578.000000, 0.684904,0.315096, 591 chr1 860853 860854 rs57816555 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop,maf-5-all-pops 591 chr1 860856 860857 rs141034733 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 860955 860956 rs28632468 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSAHASNP, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 591 chr1 860956 860957 rs28729864 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 591 chr1 861007 861008 rs28521172 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,G, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop 591 chr1 861629 861630 rs2879816 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2533.000000,2475.000000, 0.505791,0.494209, maf-5-some-pop,maf-5-all-pops 591 chr1 861807 861808 rs13302982 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop 591 chr1 862123 862124 rs13303101 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1589.000000,3419.000000, 0.317292,0.682708, maf-5-some-pop 591 chr1 862185 862186 rs74442310 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,maf-5-all-pops 591 chr1 862382 862383 rs6680268 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1594.000000,3414.000000, 0.318291,0.681709, maf-5-some-pop 591 chr1 862667 862668 rs114644749 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 591 chr1 862682 862683 rs115239915 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop,maf-5-all-pops 591 chr1 862822 862822 rs553391854 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4803.000000,205.000000, 0.959065,0.040934, 591 chr1 862865 862866 rs3892970 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2621.000000,2387.000000, 0.523363,0.476637, maf-5-some-pop,maf-5-all-pops 591 chr1 863123 863124 rs4040604 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1602.000000,3406.000000, 0.319888,0.680112, maf-5-some-pop 591 chr1 863137 863138 rs79585663 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop,maf-5-all-pops 591 chr1 863500 863501 rs28649395 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSAHASNP, 2 C,T, 410.000000,4598.000000, 0.081869,0.918131, 591 chr1 863507 863508 rs7410984 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3842.000000,1166.000000, 0.767173,0.232827, 591 chr1 863510 863511 rs28626846 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1366.000000,3642.000000, 0.272764,0.727236, 591 chr1 863520 863521 rs147534364 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 591 chr1 863547 863548 rs112703377 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 591 chr1 863555 863556 rs7410998 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4558.000000,450.000000, 0.910144,0.089856, 591 chr1 863568 863569 rs150604687 0 + C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 2 1000GENOMES,EVA-GONL, 4 A,C,G,T, 85.000000,4822.000000,80.000000,21.000000, 0.016973,0.962860,0.015974,0.004193, rs-cluster-nonoverlapping-alleles 591 chr1 863573 863574 rs544200569 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 591 chr1 863580 863581 rs532165946 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 591 chr1 863581 863582 rs7417973 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HGSV,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4639.000000,369.000000, 0.926318,0.073682, 591 chr1 863588 863589 rs568159093 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 591 chr1 863589 863590 rs61769724 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL, 2 A,G, 275.000000,4733.000000, 0.054912,0.945088, 591 chr1 863596 863596 rs564213052 0 + - - -/C genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,C, 4444.000000,564.000000, 0.887380,0.112620, 591 chr1 863602 863603 rs112468011 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,T, 182.000000,4826.000000, 0.036342,0.963658, 591 chr1 863631 863632 rs28403979 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, 591 chr1 863640 863641 rs28569249 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1408.000000,3600.000000, 0.281150,0.718850, 591 chr1 863643 863644 rs28739566 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1497.000000,3511.000000, 0.298922,0.701078, 591 chr1 863688 863689 rs7417994 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1052.000000,3956.000000, 0.210064,0.789936, 591 chr1 863977 863978 rs74047403 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop 591 chr1 864001 864002 rs1806501 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TSC-CSHL, 2 C,G, 810.000000,4198.000000, 0.161741,0.838259, maf-5-some-pop,maf-5-all-pops 591 chr1 864240 864241 rs74047404 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 591 chr1 864489 864490 rs55678698 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,HGSV,ILLUMINA, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 591 chr1 864614 864615 rs9988193 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 591 chr1 864725 864726 rs2340590 0 - T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 865218 865219 rs75551395 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop,maf-5-all-pops 591 chr1 865260 865261 rs114608936 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 865366 865367 rs75294478 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop,maf-5-all-pops 591 chr1 865583 865584 rs148711625 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 5 1000GENOMES,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 591 chr1 865693 865694 rs9988179 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,WUGSC_SSAHASNP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 591 chr1 866318 866319 rs9988021 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WUGSC_SSAHASNP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 591 chr1 866511 866511 rs375757231 0 + - - -/CCCT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BL,LUNTER, 2 -,CCCT, 4262.000000,746.000000, 0.851038,0.148962, 591 chr1 866905 866906 rs28612797 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSAHASNP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop,maf-5-all-pops 591 chr1 866937 866938 rs74047407 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1396.000000,3612.000000, 0.278754,0.721246, maf-5-some-pop,maf-5-all-pops 591 chr1 867164 867165 rs113954963 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 591 chr1 867369 867370 rs111442183 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,maf-5-all-pops 591 chr1 867417 867418 rs111274533 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 591 chr1 867441 867442 rs74047409 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 591 chr1 867583 867584 rs2341360 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 867634 867635 rs76964081 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop 591 chr1 868111 868112 rs115640463 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 591 chr1 868355 868356 rs7418554 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,TISHKOFF, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 591 chr1 868403 868404 rs13302914 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 340.000000,4668.000000, 0.067891,0.932109, 591 chr1 868417 868418 rs28546443 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,maf-5-all-pops 591 chr1 868780 868781 rs111966739 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 591 chr1 868790 868791 rs13303003 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 563.000000,4445.000000, 0.112420,0.887580, maf-5-some-pop 591 chr1 868839 868840 rs28532704 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 591 chr1 868860 868861 rs111819742 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 591 chr1 868890 868891 rs13303066 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 591 chr1 868928 868928 rs56367715 0 + - - -/G genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,BGI,BL,EVA-GONL,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 2451.000000,2557.000000, 0.489417,0.510583, 591 chr1 868980 868981 rs13303037 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop 591 chr1 869032 869033 rs116296342 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 591 chr1 869070 869071 rs115552829 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 591 chr1 869244 869244 rs200586552 0 + - - -/AG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AG, 4687.000000,321.000000, 0.935903,0.064097, 591 chr1 869248 869249 rs115526822 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop,maf-5-all-pops 591 chr1 869302 869303 rs113171913 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops 591 chr1 869322 869323 rs13303207 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 591 chr1 869368 869369 rs13303328 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP, 2 G,T, 196.000000,4812.000000, 0.039137,0.960863, 591 chr1 869372 869373 rs13303330 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,G, 4812.000000,196.000000, 0.960863,0.039137, 591 chr1 869956 869957 rs566613893 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 870320 870321 rs144561831 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4723.000000,285.000000, 0.943091,0.056909, 591 chr1 870644 870645 rs28576697 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP, 2 C,T, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop 591 chr1 870650 870651 rs76294260 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop 591 chr1 870753 870754 rs74047411 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 591 chr1 870765 870766 rs77579483 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop,maf-5-all-pops 591 chr1 870806 870806 rs113002845 0 + - - -/GGAGCTCCTCT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,GGAGCTCCTCT, 3946.000000,1062.000000, 0.787939,0.212061, 591 chr1 870810 870811 rs56024075 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,TISHKOFF, 2 A,G, 451.000000,4557.000000, 0.090056,0.909944, 591 chr1 870902 870903 rs13303094 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 591 chr1 871512 871513 rs114994266 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 591 chr1 871730 871731 rs550134676 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 591 chr1 871803 871804 rs533551753 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 591 chr1 871808 871812 rs200964180 0 + CGGT CGGT -/CGGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CGGT, 373.000000,4635.000000, 0.074481,0.925519, 591 chr1 871892 871893 rs112344117 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 591 chr1 872086 872087 rs78308511 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop,maf-5-all-pops 591 chr1 872090 872091 rs77614634 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop,maf-5-all-pops 591 chr1 872351 872352 rs1806780 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1763.000000,3245.000000, 0.352037,0.647963, maf-5-some-pop,maf-5-all-pops 591 chr1 872615 872616 rs114890122 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 591 chr1 872951 872952 rs76723341 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop,maf-5-all-pops 591 chr1 873393 873394 rs1110051 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3653.000000,1355.000000, 0.729433,0.270567, maf-5-some-pop,maf-5-all-pops 591 chr1 873461 873462 rs116804576 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 591 chr1 873557 873558 rs1110052 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 591 chr1 873858 873859 rs28525584 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 G,T, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop,maf-5-all-pops 591 chr1 874033 874034 rs75790500 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,maf-5-all-pops 591 chr1 874072 874073 rs28450942 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 591 chr1 874664 874665 rs74047413 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 591 chr1 875159 875177 rs141837153 0 + GCCAGTGGACGCCGACCT GCCAGTGGACGCCGACCT -/GCCAGTGGACGCCGACCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GCCAGTGGACGCCGACCT, 2321.000000,2687.000000, 0.463458,0.536542, 591 chr1 875635 875636 rs556157869 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 591 chr1 875642 875643 rs7411115 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 1290.000000,3718.000000, 0.257588,0.742412, 591 chr1 875676 875678 rs552305601 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CC, 3398.000000,1610.000000, 0.678514,0.321486, 591 chr1 875984 875985 rs113591768 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 876066 876067 rs145881258 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 591 chr1 876199 876200 rs71628924 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 591 chr1 876392 876393 rs112260347 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 591 chr1 876483 876484 rs118109273 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 591 chr1 876498 876499 rs4372192 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 591 chr1 876948 876949 rs72902600 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop,maf-5-all-pops 591 chr1 877146 877147 rs114982608 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop,maf-5-all-pops 591 chr1 877362 877363 rs185122266 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, 591 chr1 877714 877715 rs6605066 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,WI_SSAHASNP, 2 C,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop 591 chr1 877781 877782 rs79037098 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,maf-5-all-pops 591 chr1 877830 877831 rs6672356 0 + T T C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,SSMP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 591 chr1 878313 878314 rs142558220 0 + G G C/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 7 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,TISHKOFF,WARNICH_LAB, 2 C,G, 216.000000,4792.000000, 0.043131,0.956869, 591 chr1 878516 878517 rs201043644 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,A, 211.000000,4797.000000, 0.042133,0.957867, 591 chr1 878906 878909 rs56972694 0 + TTT TTT -/TTT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,PJP, 2 -,TTT, 3872.000000,1136.000000, 0.773163,0.226837, 591 chr1 879275 879276 rs115454328 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3,missense exact 1 4 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 879316 879317 rs7523549 0 + C C C/T genomic single unknown 0 0 coding-synon,intron,near-gene-3,ncRNA,missense exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 591 chr1 879480 879481 rs113383096 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3,ncRNA,missense exact 1 6 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 591 chr1 879575 879576 rs115979567 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3,missense,untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 591 chr1 879675 879676 rs6605067 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,maf-5-all-pops 591 chr1 879686 879687 rs2839 0 + T T C/T genomic single unknown 0 0 near-gene-3,missense,untranslated-3 exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 2 C,T, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop,maf-5-all-pops 591 chr1 879789 879795 rs145942386 0 + CTGGAA CTGGAA -/CTGGAA genomic deletion unknown 0 0 near-gene-3,cds-indel range 1 2 1000GENOMES,LUNTER, 2 -,CTGGAA, 275.000000,4733.000000, 0.054912,0.945088, 591 chr1 880237 880238 rs3748592 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 396.000000,4612.000000, 0.079073,0.920927, maf-5-some-pop,maf-5-all-pops 591 chr1 880389 880390 rs3748593 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 10 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop 591 chr1 880750 880751 rs113563466 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 591 chr1 881069 881070 rs41285794 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 591 chr1 881376 881377 rs74360597 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 280.000000,4728.000000, 0.055911,0.944089, maf-5-some-pop,maf-5-all-pops 591 chr1 881733 881734 rs74045012 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop 591 chr1 882249 882250 rs111463901 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,C, 108.000000,4900.000000, 0.021566,0.978435, 591 chr1 882780 882780 rs201354810 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4917.000000,91.000000, 0.981829,0.018171, 591 chr1 883007 883008 rs60851523 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 591 chr1 883040 883041 rs57171501 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 591 chr1 883090 883091 rs61769752 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 591 chr1 883462 883463 rs148803745 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,T, 4954.000000,54.000000, 0.989217,0.010783, 591 chr1 883698 883699 rs58979014 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 591 chr1 884090 884091 rs7522415 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 8.000000,12.000000, 0.400000,0.600000, 591 chr1 884401 884402 rs114651174 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 591 chr1 884426 884426 rs72502742 0 + - - -/ACAGCAAAG genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BGI,BILGI_BIOE,BUSHMAN,LUNTER,TISHKOFF, 2 -,ACAGCAAAG, 792.000000,4216.000000, 0.158147,0.841853, 591 chr1 884549 884553 rs368747638 0 + AGAG AGAG -/AGAG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,AGAG, 160.000000,4848.000000, 0.031949,0.968051, 591 chr1 884634 884635 rs74045014 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 591 chr1 884766 884767 rs67274836 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 591 chr1 884814 884815 rs4246503 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop,maf-5-all-pops 591 chr1 885042 885043 rs74045015 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 591 chr1 885656 885657 rs116767636 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, 591 chr1 885755 885756 rs111203417 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 591 chr1 885882 885884 rs149742804 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,GMI,LUNTER, 2 -,AC, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 885903 885904 rs76451547 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 591 chr1 885921 885922 rs111378522 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 591 chr1 885944 885945 rs28535998 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,maf-5-all-pops 591 chr1 886186 886186 rs145470050 0 + - - -/AG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,AG, 392.000000,4616.000000, 0.078275,0.921725, 591 chr1 886205 886206 rs57325195 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 591 chr1 886383 886384 rs3748594 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 591 chr1 886408 886409 rs77573237 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 591 chr1 886476 886477 rs74045017 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,NHLBI-ESP, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 591 chr1 886491 886492 rs114938545 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 591 chr1 886787 886788 rs10465242 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3551.000000,1457.000000, 0.709065,0.290935, maf-5-some-pop,maf-5-all-pops 591 chr1 886816 886817 rs10465241 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 1454.000000,3554.000000, 0.290335,0.709665, maf-5-some-pop,maf-5-all-pops 591 chr1 886817 886817 rs111748052 0 + - - -/ATTTT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,ATTTT, 4361.000000,647.000000, 0.870807,0.129193, 591 chr1 886831 886831 rs201063168 0 + - - -/GGTCA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GGTCA, 4931.000000,77.000000, 0.984625,0.015375, 591 chr1 887058 887059 rs76456117 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 468.000000,4540.000000, 0.093451,0.906550, maf-5-some-pop,maf-5-all-pops 591 chr1 887093 887094 rs74045018 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 591 chr1 887161 887162 rs17160698 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop 591 chr1 887536 887537 rs74045020 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 591 chr1 887559 887560 rs3748595 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,C, 502.000000,4506.000000, 0.100240,0.899760, maf-5-some-pop 591 chr1 887800 887801 rs3828047 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 591 chr1 888219 888220 rs28711536 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 591 chr1 888238 888239 rs58215279 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 591 chr1 888638 888639 rs3748596 0 + T T C/T genomic single unknown 0 0 coding-synon,missense exact 1 29 1000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 591 chr1 888658 888659 rs3748597 0 + T T C/T genomic single unknown 0 0 missense exact 1 32 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 591 chr1 889130 889131 rs3828048 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop 591 chr1 889158 889159 rs13302945 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP, 2 A,C, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop,maf-5-all-pops 591 chr1 889237 889238 rs3828049 0 + G G A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop 591 chr1 889285 889286 rs138652400 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 591 chr1 889637 889638 rs13303206 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4515.000000,493.000000, 0.901558,0.098442, maf-5-some-pop,maf-5-all-pops 591 chr1 889712 889713 rs13303051 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4494.000000,514.000000, 0.897364,0.102636, maf-5-some-pop,maf-5-all-pops 591 chr1 890103 890104 rs28631199 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop 591 chr1 890218 890219 rs77259182 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 591 chr1 890271 890272 rs74045022 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 C,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 591 chr1 890294 890295 rs6661531 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 591 chr1 891020 891021 rs13302957 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop,maf-5-all-pops 591 chr1 891058 891059 rs13303065 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2738.000000,2270.000000, 0.546725,0.453275, maf-5-some-pop,maf-5-all-pops 591 chr1 891897 891898 rs112164716 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 591 chr1 891944 891945 rs13303106 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2734.000000,2274.000000, 0.545927,0.454073, maf-5-some-pop 591 chr1 892011 892012 rs58879223 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,maf-5-all-pops 591 chr1 892094 892095 rs17160703 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 591 chr1 892459 892460 rs41285802 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 591 chr1 892470 892471 rs41285804 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop 591 chr1 892744 892745 rs13303227 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,maf-5-all-pops 591 chr1 893614 893615 rs75254714 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,maf-5-all-pops 591 chr1 893630 893631 rs6605069 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop,maf-5-all-pops 591 chr1 893881 893882 rs7512193 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 591 chr1 894572 894573 rs13303010 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 591 chr1 894718 894719 rs187243360 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, 591 chr1 894890 894890 rs111643007 0 + - - -/AGAC genomic insertion unknown 0 0 near-gene-5 between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,AGAC, 417.000000,4591.000000, 0.083267,0.916733, 591 chr1 895037 895037 rs200368041 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,G, 4909.000000,99.000000, 0.980232,0.019768, 591 chr1 895267 895268 rs191703739 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,WARNICH_LAB, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, 591 chr1 895705 895706 rs13303327 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 3187.000000,1821.000000, 0.636382,0.363618, maf-5-some-pop,maf-5-all-pops 591 chr1 895755 895755 rs113491766 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,G, 1815.000000,3193.000000, 0.362420,0.637580, 591 chr1 895819 895820 rs115302202 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 591 chr1 895888 895889 rs72891151 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 591 chr1 896063 896064 rs113034360 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,JMKIDD_LAB,SSMP, 2 C,G, 4546.000000,462.000000, 0.907748,0.092252, 591 chr1 896270 896271 rs112905931 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 3116.000000,1892.000000, 0.622204,0.377796, maf-5-some-pop,maf-5-all-pops 591 chr1 896332 896333 rs144174542 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4550.000000,458.000000, 0.908546,0.091454, 591 chr1 896475 896476 rs28393498 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,maf-5-all-pops 591 chr1 896949 896950 rs74045023 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 591 chr1 897324 897325 rs4970441 0 - G G C/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 25 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 897563 897564 rs13303229 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 591 chr1 897729 897730 rs7549631 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,missense exact 1 10 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop 591 chr1 897737 897738 rs6696971 0 + C C C/T genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 13 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 591 chr1 897878 897879 rs79008338 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 591 chr1 898322 898323 rs6605071 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop,maf-5-all-pops 591 chr1 898466 898467 rs41285808 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SI_EXO, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 591 chr1 898851 898852 rs117269332 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop 591 chr1 898857 898858 rs61743507 0 + C C C/T genomic single by-frequency 0.13875 0.223883 coding-synon exact 1 1 CORNELL, 2 C,T, 37.000000,3.000000, 0.925000,0.075000, maf-5-some-pop,maf-5-all-pops 591 chr1 899927 899928 rs6677386 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,NHLBI-ESP,SSAHASNP,SSMP, 2 C,G, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop,maf-5-all-pops 591 chr1 899937 899938 rs147467971 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,G, 4167.000000,841.000000, 0.832069,0.167931, 591 chr1 899941 899942 rs71509448 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,NHLBI-ESP, 2 A,G, 4019.000000,989.000000, 0.802516,0.197484, 591 chr1 899942 899943 rs574650767 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 200.000000,4808.000000, 0.039936,0.960064, 591 chr1 899948 899949 rs144694530 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4569.000000,439.000000, 0.912340,0.087660, 591 chr1 899968 899969 rs577209717 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 262.000000,4746.000000, 0.052316,0.947684, 591 chr1 899969 899970 rs546220348 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4746.000000,262.000000, 0.947684,0.052316, 591 chr1 899973 899974 rs7414551 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,SC_JCM,SSAHASNP, 2 A,G, 1029.000000,3979.000000, 0.205471,0.794529, 591 chr1 899974 899975 rs7419154 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,SC_JCM,SSAHASNP, 2 C,G, 3979.000000,1029.000000, 0.794529,0.205471, 591 chr1 899988 899989 rs6669071 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,C, 809.000000,4199.000000, 0.161542,0.838458, 591 chr1 900000 900001 rs28754834 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL, 2 A,G, 4051.000000,957.000000, 0.808906,0.191094, 591 chr1 900008 900009 rs6704181 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,G, 957.000000,4051.000000, 0.191094,0.808906, 591 chr1 900010 900010 rs558710007 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,C, 957.000000,4051.000000, 0.191094,0.808906, 591 chr1 900018 900019 rs7419177 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SC_JCM, 2 C,T, 4571.000000,437.000000, 0.912740,0.087260, 591 chr1 900168 900169 rs181648457 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, 591 chr1 900170 900171 rs186756173 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4592.000000,416.000000, 0.916933,0.083067, 591 chr1 900187 900188 rs568265657 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4601.000000,407.000000, 0.918730,0.081270, 591 chr1 900190 900191 rs534029559 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 407.000000,4601.000000, 0.081270,0.918730, 591 chr1 900198 900199 rs554003492 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4601.000000,407.000000, 0.918730,0.081270, 591 chr1 900200 900200 rs571707493 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,C, 4601.000000,407.000000, 0.918730,0.081270, 591 chr1 900207 900208 rs570260900 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 460.000000,4548.000000, 0.091853,0.908147, 591 chr1 900297 900298 rs71628926 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,NHLBI-ESP, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 900318 900319 rs80351873 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 591 chr1 900396 900397 rs111560052 0 + C C C/T genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 591 chr1 900426 900427 rs115741058 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 7 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 591 chr1 900504 900505 rs28705211 0 + G G C/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 13 1000GENOMES,ABI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,G, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 591 chr1 900559 900560 rs188543688 0 + A A A/C genomic single unknown 0 0 near-gene-5,missense exact 1 NonIntegerChromCount 4 CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,LIMM_JT, 2 A,C, 285.070007,4.930000, 0.983000,0.017000, 591 chr1 900717 900721 rs142545439 0 + TTAT TTAT -/TTAT genomic deletion unknown 0 0 near-gene-5,untranslated-3 range 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTAT, 1856.000000,3152.000000, 0.370607,0.629393, 591 chr1 900971 900972 rs9697711 0 + T T G/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4658.000000,350.000000, 0.930112,0.069888, maf-5-some-pop,maf-5-all-pops 591 chr1 901022 901023 rs13303351 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,maf-5-all-pops 591 chr1 901112 901113 rs57064333 0 + T T C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 591 chr1 901336 901337 rs72891160 0 + T T G/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 G,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 591 chr1 901558 901559 rs13303160 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3263.000000,1745.000000, 0.651558,0.348442, maf-5-some-pop,maf-5-all-pops 591 chr1 901606 901607 rs13302996 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 882.000000,4126.000000, 0.176118,0.823882, maf-5-some-pop,maf-5-all-pops 591 chr1 901651 901652 rs2879814 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 901805 901806 rs2879815 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop,maf-5-all-pops 591 chr1 901922 901923 rs149741186 0 + C C A/C genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,ROSENBERGLAB, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 591 chr1 902068 902069 rs116147894 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 418.000000,4590.000000, 0.083467,0.916534, maf-5-some-pop 591 chr1 902127 902128 rs28499371 0 + C C C/T genomic single unknown 0 0 missense exact 1 12 1000GENOMES,ABI,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop 591 chr1 902287 902288 rs77359280 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, 591 chr1 902748 902749 rs113967711 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,G, 4492.000000,516.000000, 0.896965,0.103035, 591 chr1 902755 902756 rs573481902 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 54.000000,4954.000000, 0.010783,0.989217, 591 chr1 902996 902997 rs7524174 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops 591 chr1 903103 903104 rs6696281 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop 591 chr1 903112 903113 rs28529599 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,SSAHASNP,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 591 chr1 903244 903245 rs28690976 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,TISHKOFF, 2 A,G, 2808.000000,2200.000000, 0.560703,0.439297, maf-5-some-pop,maf-5-all-pops 591 chr1 903320 903321 rs6669800 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop 591 chr1 903425 903426 rs6696609 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3090.000000,1918.000000, 0.617013,0.382987, maf-5-some-pop,maf-5-all-pops 591 chr1 904032 904033 rs13302925 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 ABI,ENSEMBL,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP, 2 A,G, 2.000000,102.000000, 0.019231,0.980769, 591 chr1 904164 904165 rs28391282 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 510.000000,4498.000000, 0.101837,0.898163, maf-5-some-pop 591 chr1 904354 904355 rs28695703 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 591 chr1 904627 904628 rs28562326 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop 591 chr1 904757 904757 rs56411007 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,TG, 483.000000,4525.000000, 0.096446,0.903554, 591 chr1 904868 904870 rs58914115 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,TISHKOFF, 2 -,TG, 122.000000,4886.000000, 0.024361,0.975639, 591 chr1 904941 904942 rs6667868 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop 591 chr1 905016 905017 rs59766802 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,SSMP,TISHKOFF, 2 C,T, 1079.000000,3929.000000, 0.215455,0.784545, 591 chr1 905019 905020 rs561810608 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4849.000000,159.000000, 0.968251,0.031749, 591 chr1 905028 905032 rs59003748 0 + CGTG CGTG -/CGTG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,TISHKOFF, 2 -,CGTG, 597.000000,4411.000000, 0.119209,0.880791, 591 chr1 905043 905045 rs201793107 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,GMI, 2 -,AT, 866.000000,4142.000000, 0.172923,0.827077, 591 chr1 905130 905132 rs139206887 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,BL,GMI,LUNTER,SSMP, 2 -,TG, 1994.000000,3014.000000, 0.398163,0.601837, 591 chr1 905158 905160 rs142329267 0 + GC GC -/GC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BL,SSMP, 2 -,GC, 181.000000,4827.000000, 0.036142,0.963858, 591 chr1 905159 905160 rs7555426 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1513.000000,3495.000000, 0.302117,0.697883, maf-5-some-pop 591 chr1 905164 905165 rs7522959 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1496.000000,3512.000000, 0.298722,0.701278, maf-5-some-pop 591 chr1 905935 905936 rs62639983 0 + C C C/T genomic single by-cluster 0.026662 0.112339 coding-synon exact 1 2 CORNELL,NHLBI-ESP, 2 C,T, 73.000000,1.000000, 0.986486,0.013513, 591 chr1 906271 906272 rs28507236 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4106.000000,902.000000, 0.819888,0.180112, maf-5-some-pop 591 chr1 906973 906974 rs28687571 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 385.000000,4623.000000, 0.076877,0.923123, maf-5-some-pop,maf-5-all-pops 591 chr1 907022 907023 rs28417170 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop,maf-5-all-pops 591 chr1 907170 907171 rs113797882 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 1513.000000,3495.000000, 0.302117,0.697883, 591 chr1 907216 907217 rs74045032 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 591 chr1 907608 907609 rs79890672 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop 591 chr1 907621 907622 rs59928984 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,NHLBI-ESP,SSMP,TISHKOFF, 2 C,G, 576.000000,4432.000000, 0.115016,0.884984, maf-5-some-pop 591 chr1 907798 907799 rs111909377 0 + T T C/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,BUSHMAN,EXOME_CHIP,NHLBI-ESP, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 591 chr1 907815 907816 rs111795407 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 591 chr1 907991 907992 rs370586021 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,SSIP,SSMP, 2 -,A, 333.000000,4675.000000, 0.066494,0.933506, 591 chr1 907992 907993 rs78806832 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,C, 4827.000000,181.000000, 0.963858,0.036142, 591 chr1 907993 907994 rs558474450 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4675.000000,333.000000, 0.933506,0.066494, 591 chr1 907997 907998 rs77098784 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 4667.000000,341.000000, 0.931909,0.068091, 591 chr1 908024 908025 rs112185012 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 591 chr1 908076 908077 rs148980964 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 591 chr1 908169 908170 rs28542142 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop,maf-5-all-pops 591 chr1 908274 908275 rs145574509 0 + G G A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 908413 908414 rs28504611 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4101.000000,907.000000, 0.818890,0.181110, maf-5-some-pop 591 chr1 908748 908749 rs111919992 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 591 chr1 908822 908823 rs28687780 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 701.000000,4307.000000, 0.139976,0.860024, maf-5-some-pop 591 chr1 909072 909073 rs3892467 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2915.000000,2093.000000, 0.582069,0.417931, maf-5-some-pop,maf-5-all-pops 591 chr1 909220 909221 rs62639985 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,CLINSEQ_SNP,CORNELL,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 591 chr1 909221 909222 rs56185812 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CORNELL,EXOME_CHIP,HGSV,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop 591 chr1 909237 909238 rs3829740 0 - G G C/G genomic single unknown 0 0 missense exact 1 28 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 909325 909326 rs61573829 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop 591 chr1 909362 909363 rs62639990 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,CLINSEQ_SNP,CORNELL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,C, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop 591 chr1 909418 909419 rs28548431 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,CORNELL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSAHASNP,SSMP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 591 chr1 909554 909555 rs2340594 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 516.000000,4492.000000,4492.000000,516.000000, 0.051518,0.448482,0.448482,0.051518, maf-5-some-pop 591 chr1 910393 910394 rs28477686 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2727.000000,2281.000000, 0.544529,0.455471, maf-5-some-pop,maf-5-all-pops 591 chr1 910408 910409 rs28536514 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 591 chr1 910472 910473 rs28561399 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 856.000000,4152.000000, 0.170927,0.829073, maf-5-some-pop,maf-5-all-pops 591 chr1 910511 910512 rs74424855 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 591 chr1 910527 910532 rs141996759 0 + AGAGA AGAGA -/AGAGA genomic deletion unknown 0 0 intron,near-gene-3 range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AGAGA, 221.000000,4787.000000, 0.044129,0.955871, 591 chr1 911100 911101 rs3748588 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop,maf-5-all-pops 591 chr1 911180 911181 rs114918572 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 591 chr1 911417 911418 rs113068688 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 591 chr1 911594 911595 rs7417106 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,MGC_GENOME_DIFF,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1451.000000,3557.000000, 0.289736,0.710264, maf-5-some-pop 591 chr1 912048 912049 rs7367995 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2597.000000,2411.000000, 0.518570,0.481430, maf-5-some-pop,maf-5-all-pops 591 chr1 913188 913189 rs551986632 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4949.000000,59.000000, 0.988219,0.011781, 591 chr1 913418 913419 rs535429849 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, 591 chr1 913421 913422 rs555071784 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 913425 913426 rs531944376 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 2741.000000,2267.000000, 0.547324,0.452676, 591 chr1 913586 913586 rs201281744 0 + - - -/AACT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AACT, 4923.000000,85.000000, 0.983027,0.016973, 591 chr1 913609 913610 rs74045047 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 591 chr1 913697 913698 rs115113522 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 591 chr1 914191 914192 rs2340595 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 914324 914325 rs140514242 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 591 chr1 914332 914333 rs13302979 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2222.000000,2786.000000, 0.443690,0.556310, maf-5-some-pop,maf-5-all-pops 591 chr1 914609 914610 rs145616017 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,CLINSEQ_SNP,EVA-GONL, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 591 chr1 914804 914805 rs28548166 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 591 chr1 914851 914852 rs13303368 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2567.000000,2441.000000, 0.512580,0.487420, maf-5-some-pop,maf-5-all-pops 591 chr1 914875 914876 rs13302983 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop 591 chr1 914939 914940 rs13303033 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2552.000000,2456.000000, 0.509585,0.490415, maf-5-some-pop,maf-5-all-pops 591 chr1 915226 915227 rs13303355 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 410.000000,4598.000000, 0.081869,0.918131, maf-5-some-pop 591 chr1 915263 915264 rs113243246 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop 591 chr1 915398 915399 rs112622122 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 591 chr1 916548 916549 rs6660139 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1209.000000,3799.000000, 0.241414,0.758586, maf-5-some-pop,maf-5-all-pops 591 chr1 916589 916590 rs28566954 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop,maf-5-all-pops 591 chr1 916661 916662 rs56028034 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4053.000000,955.000000, 0.809305,0.190695, maf-5-some-pop,maf-5-all-pops 591 chr1 916833 916834 rs6694632 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2770.000000,2238.000000, 0.553115,0.446885, maf-5-some-pop,maf-5-all-pops 591 chr1 916975 916976 rs114479127 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 591 chr1 917059 917060 rs6605058 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop 591 chr1 917314 917315 rs7547878 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops 591 chr1 917491 917492 rs28434575 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,COMPLETE_GENOMICS,CORNELL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4104.000000,904.000000, 0.819489,0.180511, maf-5-some-pop,maf-5-all-pops 592 chr1 917639 917640 rs41285816 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 758.000000,4250.000000, 0.151358,0.848642, maf-5-some-pop 592 chr1 917687 917688 rs111479166 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 592 chr1 918237 918238 rs28552711 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4228.000000,780.000000, 0.844249,0.155751, maf-5-some-pop,maf-5-all-pops 592 chr1 918269 918270 rs6659460 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop,maf-5-all-pops 592 chr1 918383 918384 rs13303118 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2541.000000,2467.000000, 0.507388,0.492612, maf-5-some-pop,maf-5-all-pops 592 chr1 918572 918573 rs2341354 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 592 chr1 918748 918749 rs145913083 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 592 chr1 918817 918818 rs373912596 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 592 chr1 919126 919127 rs28469033 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 832.000000,4176.000000, 0.166134,0.833866, maf-5-some-pop,maf-5-all-pops 592 chr1 919135 919136 rs114824944 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 592 chr1 919418 919419 rs6605059 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop,maf-5-all-pops 592 chr1 919488 919489 rs61606412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop,maf-5-all-pops 592 chr1 919525 919529 rs202103781 0 + AGTC AGTC -/AGTC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,AGTC, 332.000000,4676.000000, 0.066294,0.933706, 592 chr1 919634 919635 rs149496003 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 592 chr1 919854 919855 rs116781904 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 592 chr1 919997 919998 rs2341357 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,GMI,HGSV,TSC-CSHL, 2 A,C, 2039.000000,2969.000000, 0.407149,0.592851, 592 chr1 920050 920051 rs6656482 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,HGSV,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 592 chr1 920502 920503 rs28896913 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 575.000000,4433.000000, 0.114816,0.885184, 592 chr1 920639 920640 rs28869591 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4226.000000,782.000000, 0.843850,0.156150, maf-5-some-pop,maf-5-all-pops 592 chr1 920648 920649 rs6659542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,HGSV,JMKIDD_LAB,PJP, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 592 chr1 920691 920692 rs28878601 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop,maf-5-all-pops 592 chr1 920732 920733 rs6677131 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4525.000000,483.000000, 0.903554,0.096446, maf-5-some-pop 592 chr1 920889 920890 rs181925002 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 920976 920977 rs55692389 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 778.000000,4230.000000, 0.155351,0.844649, maf-5-some-pop,maf-5-all-pops 592 chr1 921070 921071 rs78164078 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 592 chr1 921386 921387 rs115014500 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 592 chr1 921542 921543 rs138605309 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 921569 921570 rs6662128 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4462.000000,546.000000, 0.890974,0.109026, 592 chr1 921659 921660 rs6703008 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4335.000000,673.000000, 0.865615,0.134385, 592 chr1 921715 921716 rs13303278 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2127.000000,2881.000000, 0.424720,0.575280, 592 chr1 922008 922009 rs6693747 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,maf-5-all-pops 592 chr1 922103 922104 rs150074085 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 592 chr1 922482 922483 rs114583033 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop,maf-5-all-pops 592 chr1 923075 923076 rs6605060 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 493.000000,4515.000000, 0.098442,0.901558, 592 chr1 923410 923411 rs28455528 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 923448 923448 rs200779702 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4932.000000,76.000000, 0.984824,0.015176, 592 chr1 923458 923459 rs9442609 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 592 chr1 923748 923749 rs9442610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 923972 923973 rs567711839 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 923978 923978 rs70949537 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,GMI,HUMANGENOME_JCVI,PJP, 2 -,G, 440.000000,4568.000000, 0.087859,0.912141, 592 chr1 924110 924111 rs28447224 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 957.000000,4051.000000, 0.191094,0.808906, maf-5-some-pop,maf-5-all-pops 592 chr1 924448 924452 rs148375199 0 + TTGA TTGA -/TTGA genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,TTGA, 2698.000000,2310.000000, 0.538738,0.461262, 592 chr1 924563 924567 rs577744059 0 + TTGA TTGA -/TTGA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTGA, 65.000000,4943.000000, 0.012979,0.987021, 592 chr1 924602 924603 rs28422907 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4456.000000,552.000000, 0.889776,0.110224, 592 chr1 924628 924629 rs28622096 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 592 chr1 924897 924898 rs6665000 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop 592 chr1 925613 925614 rs28884905 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,G, 177.000000,4831.000000, 0.035344,0.964656, 592 chr1 925619 925620 rs147695391 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 925683 925684 rs6605061 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 926350 926351 rs6671243 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 592 chr1 926430 926431 rs4970403 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 592 chr1 926967 926968 rs140144962 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, 592 chr1 927740 927741 rs6665587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 689.000000,4319.000000, 0.137580,0.862420, 592 chr1 927823 927824 rs146759602 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 928010 928011 rs114170846 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 592 chr1 928287 928288 rs111308432 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 592 chr1 928296 928297 rs112169476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 592 chr1 928311 928312 rs74045070 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 592 chr1 928415 928416 rs111754459 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 1092.000000,3916.000000, 0.218051,0.781949, 592 chr1 928461 928462 rs182517078 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, 592 chr1 928577 928578 rs28394749 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop 592 chr1 928597 928598 rs114605661 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 592 chr1 928743 928744 rs74045071 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 592 chr1 928835 928836 rs9777703 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 592 chr1 928849 928851 rs112853871 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,AG, 250.000000,4758.000000, 0.049920,0.950080, 592 chr1 928859 928860 rs117787650 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 118.000000,2.000000, 0.983333,0.016667, 592 chr1 928968 928969 rs115490086 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 592 chr1 929189 929190 rs9777939 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop 592 chr1 929326 929327 rs13302924 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 592 chr1 929564 929565 rs144071868 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4214.000000,794.000000, 0.841454,0.158546, 592 chr1 929701 929701 rs541210110 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 2004.000000,3004.000000, 0.400160,0.599840, 592 chr1 930328 930329 rs3128108 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop,maf-5-all-pops 592 chr1 930376 930377 rs3128109 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop,maf-5-all-pops 592 chr1 930532 930533 rs3128110 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3184.000000,1824.000000, 0.635783,0.364217, maf-5-some-pop,maf-5-all-pops 592 chr1 930750 930751 rs3128111 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3495.000000,1513.000000, 0.697883,0.302117, maf-5-some-pop,maf-5-all-pops 592 chr1 930888 930893 rs55952878 0 + TTTTT TTTTT -/TTTTT genomic deletion unknown 0 0 unknown range 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 -,TTTTT, 2741.000000,2267.000000, 0.547324,0.452676, 592 chr1 930891 930892 rs2799059 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SC_JCM,TISHKOFF, 2 C,T, 2161.000000,2847.000000, 0.431510,0.568490, 592 chr1 931228 931229 rs9697692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 592 chr1 931338 931339 rs59628617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 592 chr1 931361 931362 rs2799060 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP, 2 A,G, 1625.000000,3383.000000, 0.324481,0.675519, maf-5-some-pop,maf-5-all-pops 592 chr1 931454 931455 rs28580809 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,SSAHASNP,TISHKOFF, 2 A,C, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 592 chr1 931499 931500 rs74718486 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4187.000000,821.000000, 0.836062,0.163938, maf-5-some-pop,maf-5-all-pops 592 chr1 931507 931508 rs2799061 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,T, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 592 chr1 931547 931548 rs2799062 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP, 2 G,T, 4317.000000,691.000000, 0.862021,0.137979, maf-5-some-pop 592 chr1 931634 931634 rs376071850 0 + - - -/GGGAGGGCAG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,GGGAGGGCAG, 4325.000000,683.000000, 0.863618,0.136382, 592 chr1 931729 931730 rs2005437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 177.000000,4831.000000, 0.035343,0.964657, maf-5-some-pop 592 chr1 931872 931873 rs2002848 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 A,G, 4276.000000,732.000000, 0.853834,0.146166, 592 chr1 931938 931939 rs13303155 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,SSAHASNP,SSMP, 2 A,G, 1944.000000,3064.000000, 0.388179,0.611821, 592 chr1 932053 932054 rs13302969 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,HGSV,SSAHASNP,SSMP, 2 G,T, 2558.000000,2450.000000, 0.510783,0.489217, 592 chr1 932086 932087 rs4350142 0 + T T G/T genomic single unknown 0.486111 0.082168 unknown exact 1 7 COMPLETE_GENOMICS,ENSEMBL,HGSV,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 G,T, 7.000000,5.000000, 0.583333,0.416667, 592 chr1 932101 932102 rs3121573 0 - G G C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,SC_JCM,SSAHASNP, 2 C,T, 3.000000,7.000000, 0.300000,0.700000, 592 chr1 932175 932176 rs563804911 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 932309 932310 rs28645261 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 592 chr1 932456 932457 rs1891910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop 592 chr1 932617 932618 rs3128112 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 177.000000,4831.000000, 0.035343,0.964657, 592 chr1 933026 933027 rs138918754 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 592 chr1 933044 933045 rs189213898 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 933446 933447 rs115202918 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 592 chr1 933588 933589 rs116625239 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 592 chr1 933789 933790 rs9442392 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2701.000000,2307.000000, 0.539337,0.460663, maf-5-some-pop,maf-5-all-pops 592 chr1 934098 934099 rs2710867 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSMP, 2 C,G, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop 592 chr1 934105 934106 rs2799063 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP, 2 A,G, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop 592 chr1 934129 934130 rs9697384 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,SSMP,WI_SSAHASNP, 2 C,G, 824.000000,4184.000000, 0.164537,0.835463, maf-5-some-pop,maf-5-all-pops 592 chr1 934143 934144 rs9697551 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,WI_SSAHASNP, 2 C,G, 2659.000000,2349.000000, 0.530950,0.469050, 592 chr1 934144 934144 rs145897528 0 + - - -/GGAGG genomic insertion unknown 0 0 near-gene-3 between 1 2 1000GENOMES,LUNTER, 2 -,GGAGG, 3954.000000,1054.000000, 0.789537,0.210463, 592 chr1 934344 934345 rs9697457 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop 592 chr1 935045 935046 rs113602214 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SSMP, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 592 chr1 935397 935398 rs146254088 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 592 chr1 935458 935459 rs3128113 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 A,G, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 592 chr1 935658 935659 rs139298395 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 935670 935671 rs116904365 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 592 chr1 935714 935715 rs3128114 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 5 1000GENOMES,EVA-GONL,HGSV,SC_JCM,SSMP, 2 C,T, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop,maf-5-all-pops 592 chr1 935832 935833 rs3128115 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 C,G, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 592 chr1 935931 935932 rs35310704 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 7 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,PJP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 936486 936487 rs116607870 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4927.000000,81.000000, 0.983826,0.016174, 592 chr1 936686 936687 rs114518990 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,C, 100.000000,4908.000000, 0.019968,0.980032, 592 chr1 936712 936713 rs61766282 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI, 2 G,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop,maf-5-all-pops 592 chr1 937249 937250 rs28615823 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 C,G, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop,maf-5-all-pops 592 chr1 937431 937432 rs111758243 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 937572 937572 rs559968229 0 + - - -/T genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,T, 4544.000000,464.000000, 0.907348,0.092652, 592 chr1 937672 937673 rs141263266 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 937777 937778 rs116316555 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 592 chr1 937795 937796 rs9777993 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,SSAHASNP, 2 A,T, 3003.000000,2005.000000, 0.599641,0.400359, 592 chr1 938219 938220 rs9697602 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 592 chr1 938299 938300 rs4595317 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,HGSV,PJP,SC_JCM,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, 592 chr1 938709 938728 rs201843604 0 + GGGTGGATCCTGGGCTGCA GGGTGGATCCTGGGCTGCA -/GGGTGGATCCTGGGCTGCA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GGGTGGATCCTGGGCTGCA, 143.000000,4865.000000, 0.028554,0.971446, 592 chr1 939214 939215 rs79589496 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 939491 939492 rs200016087 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 687.000000,4321.000000, 0.137181,0.862819, 592 chr1 939812 939813 rs115139441 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 592 chr1 940095 940096 rs4503294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2335.000000,2673.000000, 0.466254,0.533746, maf-5-some-pop,maf-5-all-pops 592 chr1 940331 940331 rs200808990 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 940334 940334 rs541896117 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 940541 940542 rs28360890 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 ABI,ENSEMBL,ILLUMINA,KRIBB_YJKIM,SSAHASNP, 2 A,C, 12.000000,1006.000000, 0.011788,0.988212, 592 chr1 940809 940809 rs58913475 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 3517.000000,1491.000000, 0.702276,0.297724, 592 chr1 941100 941101 rs114443588 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 592 chr1 941137 941151 rs61703480 0 + GCCCCCGCAGCAGT GCCCCCGCAGCAGT -/GCCCCCGCAGCAGT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER, 2 -,GCCCCCGCAGCAGT, 3816.000000,1192.000000, 0.761981,0.238019, 592 chr1 941283 941284 rs3128116 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 3518.000000,1490.000000, 0.702476,0.297524, maf-5-some-pop,maf-5-all-pops 592 chr1 941333 941334 rs57683598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1469.000000,3539.000000, 0.293331,0.706669, maf-5-some-pop,maf-5-all-pops 592 chr1 941538 941539 rs9778087 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3134.000000,1874.000000, 0.625799,0.374201, maf-5-some-pop,maf-5-all-pops 592 chr1 941618 941619 rs28615107 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 592 chr1 941795 941803 rs145588482 0 + GGCAGCTC GGCAGCTC -/GGCAGCTC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GGCAGCTC, 360.000000,4648.000000, 0.071885,0.928115, 592 chr1 942029 942030 rs114204204 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 592 chr1 942291 942292 rs114970381 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 942405 942406 rs9697552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 592 chr1 942608 942609 rs116505294 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 592 chr1 942635 942636 rs76233940 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,maf-5-all-pops 592 chr1 942704 942705 rs9697682 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 592 chr1 942737 942738 rs9697440 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 315.000000,4693.000000, 0.062899,0.937101, 592 chr1 942893 942894 rs149831251 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 943249 943250 rs3121568 0 - C C A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 6.000000,4.000000, 0.600000,0.400000, 592 chr1 943686 943687 rs2465140 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop,maf-5-all-pops 592 chr1 943711 943712 rs74045075 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 592 chr1 943748 943749 rs114594699 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 592 chr1 943906 943907 rs2488992 0 - C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 943967 943968 rs13303313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2467.000000,2541.000000, 0.492612,0.507388, 592 chr1 944006 944007 rs143815266 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 944062 944063 rs28386817 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 592 chr1 944203 944204 rs116676018 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 592 chr1 944563 944564 rs3128117 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1503.000000,3505.000000, 0.300120,0.699880, maf-5-some-pop,maf-5-all-pops 592 chr1 944849 944850 rs189318670 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4945.000000,63.000000, 0.987420,0.012580, 592 chr1 944856 944857 rs141222777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 592 chr1 944955 944956 rs138882270 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, 592 chr1 945017 945018 rs181948176 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 592 chr1 945095 945096 rs3135457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 945.000000,4063.000000, 0.188698,0.811302, maf-5-some-pop 592 chr1 945110 945111 rs13303172 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 592 chr1 945348 945349 rs114176189 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 592 chr1 945861 945865 rs150242145 0 + TTAT TTAT -/TTAT genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTAT, 4245.000000,763.000000, 0.847644,0.152356, 592 chr1 945910 945911 rs74045077 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 592 chr1 945943 945944 rs74045078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 592 chr1 946134 946135 rs9723307 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,GMI,SC_JCM, 2 G,T, 4455.000000,553.000000, 0.889577,0.110423, 592 chr1 946195 946196 rs151311466 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, 592 chr1 946987 946988 rs116274049 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 592 chr1 946998 946999 rs74045079 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop,maf-5-all-pops 592 chr1 947562 947563 rs60928912 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, 592 chr1 947702 947703 rs55672842 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,HGSV, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 592 chr1 947777 947778 rs9697358 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 592 chr1 947808 947809 rs115074115 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,G, 74.000000,4934.000000, 0.014776,0.985224, 592 chr1 948421 948421 rs113047134 0 + - - -/AAC genomic insertion unknown 0 0 near-gene-5 between 1 6 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,LUNTER, 2 -,AAC, 432.000000,4576.000000, 0.086262,0.913738, 592 chr1 948476 948477 rs116046129 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 948578 948579 rs74045080 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 592 chr1 948691 948692 rs2341365 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop 592 chr1 948869 948870 rs4615788 0 + C C C/G genomic single unknown 0 0 untranslated-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop 592 chr1 949052 949053 rs28491407 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,TISHKOFF, 2 C,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 592 chr1 949607 949608 rs1921 0 + G G A/G genomic single unknown 0 0 missense exact 1 29 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,DEBNICK,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,SC_JCM,SC_SNP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,UWGC,WIAF,YUSUKE, 2 A,G, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 592 chr1 949653 949654 rs8997 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 26 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 592 chr1 949830 949831 rs116002608 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SSMP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop 592 chr1 950113 950117 rs140258289 0 + AAGT AAGT -/AAGT genomic deletion unknown 0 0 near-gene-3 range 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,AAGT, 2636.000000,2372.000000, 0.526358,0.473642, 592 chr1 950507 950508 rs28446115 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 592 chr1 950598 950599 rs138098440 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 592 chr1 950676 950677 rs9331223 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2671.000000,2337.000000, 0.533347,0.466653, maf-5-some-pop,maf-5-all-pops 592 chr1 950715 950716 rs2799069 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 592 chr1 951282 951283 rs9442363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2345.000000,2663.000000, 0.468251,0.531749, 592 chr1 951294 951295 rs9442388 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 2346.000000,2662.000000, 0.468450,0.531550, 592 chr1 951305 951305 rs575235313 0 + - - -/TT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TT, 3505.000000,1503.000000, 0.699880,0.300120, 592 chr1 951321 951322 rs9697362 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 541.000000,4467.000000, 0.108027,0.891973, 592 chr1 951329 951330 rs9697717 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 951563 951564 rs2465141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 3189.000000,1819.000000, 0.636781,0.363219, 592 chr1 951729 951730 rs114475700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 592 chr1 952002 952003 rs3128118 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1467.000000,3541.000000, 0.292931,0.707069, 592 chr1 952134 952135 rs28810436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 952344 952345 rs114885312 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 592 chr1 952494 952494 rs59239970 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,PJP,SSMP, 2 -,T, 3514.000000,1494.000000, 0.701677,0.298323, 592 chr1 952506 952507 rs80090692 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 G,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 952641 952642 rs150130275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 592 chr1 952745 952746 rs148896243 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 953076 953077 rs137877036 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SSAHASNP,TISHKOFF, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 953183 953183 rs200588723 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,GMI,LUNTER, 2 -,GT, 507.000000,4501.000000, 0.101238,0.898762, 592 chr1 953223 953224 rs139816136 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,T, 707.000000,4301.000000, 0.141174,0.858826, 592 chr1 953677 953678 rs113454255 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,T, 4301.000000,707.000000, 0.858826,0.141174, 592 chr1 953701 953702 rs115432780 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 592 chr1 953731 953732 rs150870361 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, 592 chr1 953744 953745 rs139425842 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 953782 953783 rs189370274 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 592 chr1 953951 953952 rs9442612 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2393.000000,2615.000000, 0.477835,0.522165, 592 chr1 954031 954032 rs75267490 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 3599.000000,1409.000000, 0.718650,0.281350, 592 chr1 954065 954066 rs144574777 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, 592 chr1 954283 954284 rs139943737 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 954776 954777 rs61766299 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 2392.000000,2616.000000, 0.477636,0.522364, maf-5-some-pop,maf-5-all-pops 592 chr1 955077 955078 rs529538851 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 592 chr1 955169 955170 rs189343112 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,MPI_MOLGEN, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 592 chr1 955212 955213 rs78276138 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 592 chr1 955440 955442 rs569722974 0 + CC CC -/CC genomic deletion unknown 0 0 near-gene-5 range 1 1 1000GENOMES, 2 -,CC, 2920.000000,2088.000000, 0.583067,0.416933, 592 chr1 955596 955597 rs115173026 0 + G G G/T genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 3593.000000,1415.000000, 0.717452,0.282548, maf-5-some-pop,maf-5-all-pops 592 chr1 955678 955679 rs4970342 0 + G G A/G genomic single by-cluster,by-frequency,by-hapmap 0.0853 0.188079 missense exact 1 3 ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 15.000000,321.000000, 0.044643,0.955357, maf-5-some-pop 592 chr1 956076 956077 rs116130865 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 3594.000000,1414.000000, 0.717652,0.282348, maf-5-some-pop,maf-5-all-pops 592 chr1 956244 956245 rs549217966 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 592 chr1 956326 956327 rs111893801 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 592 chr1 956492 956493 rs74045083 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 592 chr1 956851 956852 rs9777931 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2374.000000,2634.000000, 0.474042,0.525958, maf-5-some-pop,maf-5-all-pops 592 chr1 956971 956972 rs28555183 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop 592 chr1 957104 957105 rs149265376 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 957119 957120 rs3121553 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,maf-5-all-pops 592 chr1 957170 957171 rs115025567 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 957172 957173 rs74045085 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 592 chr1 957254 957255 rs116468960 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 592 chr1 957567 957568 rs115704555 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 957639 957640 rs6657048 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BCM_SSAHASNP,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 592 chr1 957897 957898 rs2799064 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 G,T, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 592 chr1 957967 957967 rs141489152 0 + - - -/TGTAGTCTGACCTGTGGTCTGAC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,TGTAGTCTGACCTGTGGTCTGAC, 538.000000,4470.000000, 0.107428,0.892572, 592 chr1 958016 958017 rs6670874 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,EVA-GONL, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, 592 chr1 958235 958236 rs113847517 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 592 chr1 958247 958248 rs2001744 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3272.000000,1736.000000, 0.653355,0.346645, maf-5-some-pop,maf-5-all-pops 592 chr1 958683 958684 rs140010813 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 592 chr1 959025 959026 rs4452985 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 592 chr1 959154 959155 rs3845291 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop,maf-5-all-pops 592 chr1 959168 959169 rs3845292 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2830.000000,2178.000000, 0.565096,0.434904, maf-5-some-pop,maf-5-all-pops 592 chr1 959508 959509 rs28591569 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 549.000000,4459.000000, 0.109625,0.890375, maf-5-some-pop,maf-5-all-pops 592 chr1 959988 959989 rs190418699 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 592 chr1 960408 960409 rs4970392 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2386.000000,2622.000000, 0.476438,0.523562, maf-5-some-pop,maf-5-all-pops 592 chr1 960680 960681 rs144619388 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 960940 960941 rs3121554 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1358.000000,3650.000000, 0.271166,0.728834, maf-5-some-pop,maf-5-all-pops 592 chr1 961349 961350 rs3121555 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3584.000000,1424.000000, 0.715655,0.284345, maf-5-some-pop,maf-5-all-pops 592 chr1 961365 961366 rs185365466 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 592 chr1 961366 961367 rs113220637 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 3 1000GENOMES,BUSHMAN,TISHKOFF, 4 A,C,G,T, 65.000000,38.000000,4900.000000,5.000000, 0.012979,0.007588,0.978435,0.000998, 592 chr1 961371 961372 rs114663692 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 592 chr1 961463 961464 rs3128125 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop,maf-5-all-pops 592 chr1 961598 961599 rs78583450 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 592 chr1 961604 961605 rs112555755 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 592 chr1 961826 961827 rs3121556 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 592 chr1 961985 961986 rs111412577 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop,maf-5-all-pops 592 chr1 962036 962036 rs145258231 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4777.000000,231.000000, 0.953874,0.046126, 592 chr1 962082 962083 rs139374940 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 962209 962210 rs3128126 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops 592 chr1 962605 962606 rs4970393 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2688.000000,2320.000000, 0.536741,0.463259, maf-5-some-pop,maf-5-all-pops 592 chr1 962719 962720 rs28670633 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BGI,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,maf-5-all-pops 592 chr1 962756 962757 rs114948506 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 592 chr1 962829 962830 rs139739296 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 54.000000,4954.000000, 0.010783,0.989217, 592 chr1 962890 962891 rs4970394 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2184.000000,2824.000000, 0.436102,0.563898, maf-5-some-pop,maf-5-all-pops 592 chr1 962939 962940 rs145992853 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 963012 963013 rs9442389 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 592 chr1 963337 963338 rs72900404 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 592 chr1 963466 963470 rs201613192 0 + CACT CACT -/CACT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CACT, 53.000000,4955.000000, 0.010583,0.989417, 592 chr1 963660 963661 rs13303147 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,SSAHASNP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 963813 963814 rs114899427 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop,maf-5-all-pops 592 chr1 963944 963945 rs113632379 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 302.000000,4706.000000, 0.060304,0.939696, 592 chr1 963984 963985 rs4413989 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 592 chr1 963985 963986 rs58399787 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 592 chr1 964229 964230 rs28637280 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSAHASNP, 2 A,G, 576.000000,4432.000000, 0.115016,0.884984, 592 chr1 964283 964284 rs530071434 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 964301 964302 rs540597189 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, 592 chr1 964449 964450 rs113218069 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 592 chr1 964461 964462 rs552815615 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 150.000000,4858.000000, 0.029952,0.970048, 592 chr1 964839 964840 rs4970343 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,WI_SSAHASNP, 2 C,T, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop 592 chr1 964847 964848 rs4970344 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,WI_SSAHASNP, 2 A,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 592 chr1 965008 965009 rs71576588 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, 592 chr1 965088 965088 rs371849180 0 + - - -/CAG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CAG, 4907.000000,101.000000, 0.979832,0.020168, 592 chr1 965174 965175 rs28373660 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 786.000000,4222.000000, 0.156949,0.843051, maf-5-some-pop 592 chr1 965277 965278 rs28433148 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 965420 965420 rs530602592 0 + - - -/TGG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TGG, 4770.000000,238.000000, 0.952476,0.047524, 592 chr1 965603 965604 rs28972693 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,GMI,HGSV,PJP,SSAHASNP, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, 592 chr1 965875 965876 rs111203424 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4091.000000,917.000000, 0.816893,0.183107, 592 chr1 965876 965876 rs370270944 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,GT, 2071.000000,2937.000000, 0.413538,0.586462, 592 chr1 965938 965939 rs28970526 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,SSAHASNP, 2 A,T, 501.000000,4507.000000, 0.100040,0.899960, 592 chr1 966011 966013 rs369815264 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,GA, 3779.000000,1229.000000, 0.754593,0.245407, 592 chr1 966078 966079 rs150628606 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,GMI, 2 C,T, 3433.000000,1575.000000, 0.685503,0.314497, 592 chr1 966125 966126 rs546204925 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 966391 966393 rs138206193 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BL,GMI,LUNTER,SSMP, 2 -,TG, 2716.000000,2292.000000, 0.542332,0.457668, 592 chr1 966471 966471 rs575727439 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TG, 3576.000000,1432.000000, 0.714058,0.285942, 592 chr1 967657 967658 rs4970349 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2590.000000,2418.000000, 0.517173,0.482827, maf-5-some-pop,maf-5-all-pops 592 chr1 968017 968017 rs199896438 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,C, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 968225 968226 rs3121560 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1240.000000,3768.000000, 0.247604,0.752396, maf-5-some-pop,maf-5-all-pops 592 chr1 968325 968326 rs116556814 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4855.000000,153.000000, 0.969449,0.030551, 592 chr1 968344 968345 rs114490664 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 592 chr1 968944 968945 rs147784721 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, 592 chr1 969658 969659 rs2710884 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 1222.000000,3786.000000, 0.244010,0.755990, maf-5-some-pop,maf-5-all-pops 592 chr1 969669 969670 rs569113956 0 + C C C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4936.000000,72.000000, 0.985623,0.014377, 592 chr1 970214 970215 rs9442364 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_SNP,SSMP, 2 C,G, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops 592 chr1 970416 970417 rs111329619 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,C, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 592 chr1 970454 970455 rs116522930 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 592 chr1 970544 970545 rs567725793 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 592 chr1 970545 970546 rs530277061 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 592 chr1 970787 970788 rs116010269 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 592 chr1 970835 970836 rs112116228 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 592 chr1 970914 970915 rs115493882 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 592 chr1 971119 971120 rs138713971 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 592 chr1 971183 971184 rs113132882 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 592 chr1 971223 971224 rs2799055 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 971366 971367 rs2710883 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop 592 chr1 971686 971687 rs116375407 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 592 chr1 971964 971965 rs116627277 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 592 chr1 971990 971991 rs113338160 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 972179 972180 rs4970350 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2808.000000,2200.000000, 0.560703,0.439297, maf-5-some-pop,maf-5-all-pops 592 chr1 972185 972186 rs78759328 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 972322 972323 rs113178724 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 592 chr1 972686 972687 rs116780975 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 592 chr1 972751 972752 rs115026561 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 592 chr1 972982 972983 rs9442390 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, 592 chr1 973335 973336 rs2488993 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 973376 973377 rs2465129 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 592 chr1 973457 973458 rs2465130 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 582.000000,4426.000000, 0.116214,0.883786, maf-5-some-pop 592 chr1 973667 973668 rs2488994 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 592 chr1 973858 973859 rs116128075 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 592 chr1 974020 974021 rs72900426 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop 592 chr1 974122 974123 rs10126047 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,WI_SSAHASNP, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 592 chr1 974163 974164 rs113181980 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 974179 974180 rs3121577 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974198 974199 rs2465131 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974224 974225 rs2488995 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974295 974296 rs2488996 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974309 974310 rs72900432 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 592 chr1 974352 974353 rs114753995 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 974355 974356 rs2465132 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 592 chr1 974390 974391 rs76088616 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 592 chr1 974493 974494 rs2465133 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop,maf-5-all-pops 592 chr1 974569 974570 rs2465134 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop,maf-5-all-pops 592 chr1 974661 974662 rs2465135 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop,maf-5-all-pops 592 chr1 974709 974710 rs115805682 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 974791 974791 rs71576591 0 + - - -/GG genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER, 2 -,GG, 901.000000,4107.000000, 0.179912,0.820088, 592 chr1 974893 974894 rs3121578 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 969.000000,4039.000000, 0.193490,0.806510, maf-5-some-pop 592 chr1 974987 974988 rs115049241 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 592 chr1 975132 975133 rs3121579 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,T, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop,maf-5-all-pops 592 chr1 975701 975702 rs9331224 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop 592 chr1 975780 975781 rs116503955 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 975992 976000 rs200311998 0 + ACGTGGGT ACGTGGGT -/ACGTGGGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,ACGTGGGT, 68.000000,4940.000000, 0.013578,0.986422, 592 chr1 976553 976554 rs191270495 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 592 chr1 976628 976629 rs113789806 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, 592 chr1 976962 976963 rs150359724 0 + A A A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 592 chr1 977199 977200 rs60258413 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 977202 977203 rs3121552 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,G, 4491.000000,517.000000, 0.896765,0.103235, 592 chr1 977219 977220 rs144150197 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 977293 977294 rs114521679 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 592 chr1 978045 978046 rs9331225 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 592 chr1 978147 978147 rs370972452 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,G, 4935.000000,73.000000, 0.985423,0.014577, 592 chr1 978973 978974 rs79016973 0 + G G A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 592 chr1 979436 979437 rs151102274 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 979513 979514 rs28484890 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSAHASNP, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 979689 979690 rs115413462 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop 592 chr1 979747 979748 rs113288277 0 + A A A/T genomic single unknown 0 0 missense exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 592 chr1 979834 979835 rs114389542 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 592 chr1 979889 979890 rs116273657 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 592 chr1 979936 979937 rs72900439 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 592 chr1 980076 980077 rs116106396 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,TISHKOFF, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 592 chr1 980188 980189 rs114879738 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 592 chr1 980275 980276 rs115449966 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 592 chr1 980439 980440 rs112752525 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 592 chr1 980459 980460 rs3128097 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop 592 chr1 980772 980773 rs75774767 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 980947 980948 rs183108359 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 592 chr1 980955 980956 rs139005472 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,C, 156.000000,4852.000000, 0.031150,0.968850, 592 chr1 980974 980975 rs113849939 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 592 chr1 981086 981087 rs3128098 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 592 chr1 981130 981131 rs9697293 0 + A A A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 592 chr1 981930 981931 rs2465128 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,YUSUKE, 2 A,G, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop 592 chr1 981941 981942 rs3813188 0 + C C A/C genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 982212 982213 rs150132566 0 + G G C/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,WARNICH_LAB, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 592 chr1 982443 982444 rs3128099 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,YUSUKE, 2 A,G, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop 592 chr1 982461 982462 rs3128100 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop 592 chr1 982471 982472 rs116472750 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 592 chr1 982483 982484 rs3813191 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,YUSUKE, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 592 chr1 982512 982513 rs3128101 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 592 chr1 982572 982573 rs3813192 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop 592 chr1 982721 982722 rs142416636 0 + A A A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 592 chr1 982843 982844 rs76264143 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 592 chr1 982940 982941 rs3128102 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop 592 chr1 982993 982994 rs10267 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 592 chr1 983005 983006 rs75361935 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 983769 983770 rs114691276 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 592 chr1 983924 983925 rs113521698 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 284.000000,4724.000000, 0.056709,0.943291, 592 chr1 984015 984016 rs112285003 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, 592 chr1 984032 984033 rs113822357 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4721.000000,287.000000, 0.942692,0.057308, 592 chr1 984060 984061 rs138543764 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, 592 chr1 984101 984102 rs149267690 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 280.000000,4728.000000, 0.055911,0.944089, 592 chr1 984147 984158 rs569475810 0 + AAAAAAAAAAA AAAAAAAAAAA -/AAAAAAAAAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AAAAAAAAAAA, 4610.000000,398.000000, 0.920527,0.079473, 592 chr1 984171 984173 rs140904842 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,AG, 4610.000000,398.000000, 0.920527,0.079473, 592 chr1 984201 984202 rs115499153 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,maf-5-all-pops 592 chr1 984301 984302 rs9442391 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 2733.000000,2275.000000, 0.545727,0.454273, maf-5-some-pop,maf-5-all-pops 592 chr1 984455 984456 rs188005130 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 984768 984769 rs75767981 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 592 chr1 984846 984847 rs112917612 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 C,G, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop,maf-5-all-pops 592 chr1 984859 984860 rs146377446 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 984887 984888 rs112331531 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop,maf-5-all-pops 592 chr1 985170 985171 rs115019873 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 592 chr1 985238 985239 rs115192323 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 592 chr1 985508 985509 rs111638438 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 592 chr1 985752 985753 rs60267685 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 592 chr1 985796 985797 rs142286944 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 592 chr1 985825 985826 rs17160775 0 + G G A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SEATTLESEQ,TISHKOFF, 2 A,G, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop,maf-5-all-pops 592 chr1 985899 985900 rs17160776 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 592 chr1 985998 985999 rs111726760 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop,maf-5-all-pops 592 chr1 986009 986010 rs116257587 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 C,T, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,maf-5-all-pops 592 chr1 986284 986285 rs112497350 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop,maf-5-all-pops 592 chr1 986285 986286 rs55707163 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,maf-5-all-pops 592 chr1 986442 986443 rs2710887 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1059.000000,3949.000000, 0.211462,0.788538, maf-5-some-pop 592 chr1 986736 986737 rs17160781 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SEATTLESEQ, 2 C,T, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 592 chr1 987199 987200 rs9803031 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1058.000000,3950.000000, 0.211262,0.788738, maf-5-some-pop 592 chr1 987669 987670 rs13303287 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 592 chr1 987777 987777 rs199613393 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,TG, 4655.000000,353.000000, 0.929513,0.070487, 592 chr1 988015 988016 rs55669479 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,SSMP, 2 C,T, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop,maf-5-all-pops 592 chr1 988057 988061 rs57324184 0 + TAGT TAGT -/TAGT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,TISHKOFF, 2 -,TAGT, 90.000000,4918.000000, 0.017971,0.982029, 592 chr1 988198 988201 rs370285367 0 + GCA GCA -/GCA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,SSIP,SSMP, 2 -,GCA, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 988309 988310 rs13303307 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, 592 chr1 988502 988503 rs2799071 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1056.000000,3952.000000, 0.210863,0.789137, maf-5-some-pop,maf-5-all-pops 592 chr1 988615 988616 rs556961651 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4724.000000,284.000000, 0.943291,0.056709, 592 chr1 988659 988659 rs113523678 0 + - - -/CGTGTCCGCAC genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,TISHKOFF, 2 -,CGTGTCCGCAC, 4654.000000,354.000000, 0.929313,0.070687, 592 chr1 988901 988902 rs74223856 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 592 chr1 989460 989461 rs9778201 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop 592 chr1 989499 989500 rs72900467 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,G, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop 592 chr1 990279 990280 rs4275402 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 21 1000GENOMES,ABI,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 2077.000000,2931.000000, 0.414736,0.585264, maf-5-some-pop,maf-5-all-pops 592 chr1 990532 990533 rs4308920 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,ABI,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop,maf-5-all-pops 592 chr1 990686 990687 rs4308921 0 - G G A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic 6 1000GENOMES,ABI,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_JCM, 4 A,C,G,T, 232.000000,4776.000000,4776.000000,232.000000, 0.023163,0.476837,0.476837,0.023163, maf-5-some-pop,maf-5-all-pops 592 chr1 990772 990773 rs2799072 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 771.000000,4237.000000, 0.153954,0.846046, maf-5-some-pop 592 chr1 990805 990806 rs2799073 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 592 chr1 990838 990839 rs13129 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 592 chr1 990881 990882 rs4587516 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,ABI,ILLUMINA,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 592 chr1 990942 990943 rs28632009 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,maf-5-all-pops 592 chr1 990983 990984 rs8014 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 592 chr1 991722 991723 rs146457270 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 991723 991724 rs3121562 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 1133.000000,3875.000000, 0.226238,0.773762, maf-5-some-pop 592 chr1 991794 991810 rs569403921 0 + ACGTGTGGGTGCGGGT ACGTGTGGGTGCGGGT -/ACGTGTGGGTGCGGGT genomic deletion unknown 0 0 near-gene-3 range 1 1 1000GENOMES, 2 -,ACGTGTGGGTGCGGGT, 147.000000,4861.000000, 0.029353,0.970647, 592 chr1 991859 991860 rs115193727 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 991870 991871 rs111984447 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 592 chr1 991903 991904 rs79743109 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,SSMP, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 592 chr1 991981 991982 rs2710885 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,T, 4612.000000,396.000000, 0.920927,0.079073, 592 chr1 992041 992042 rs3121564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 414.000000,4594.000000, 0.082668,0.917332, 592 chr1 992048 992048 rs112111627 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,LUNTER, 2 -,GT, 1591.000000,3417.000000, 0.317692,0.682308, 592 chr1 992083 992084 rs2710886 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, 592 chr1 992093 992094 rs2799074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 592 chr1 992264 992265 rs115037261 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 592 chr1 992326 992327 rs2245754 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop 592 chr1 992510 992511 rs57933167 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,HGSV,SSMP,TISHKOFF, 2 C,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop 592 chr1 992818 992819 rs9331226 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop,maf-5-all-pops 592 chr1 992840 992842 rs150915126 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,BL, 2 -,TT, 4597.000000,411.000000, 0.917931,0.082069, 592 chr1 992843 992844 rs9777717 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,BGI,BL,GMI, 2 A,T, 648.000000,4360.000000, 0.129393,0.870607, 592 chr1 992851 992854 rs567708055 0 + AAG AAG -/AAG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AAG, 320.000000,4688.000000, 0.063898,0.936102, 592 chr1 992852 992854 rs199540740 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,WARNICH_LAB, 2 -,AG, 3914.000000,1094.000000, 0.781550,0.218450, 592 chr1 993027 993028 rs144629300 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 592 chr1 993133 993133 rs537993071 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,A, 4525.000000,483.000000, 0.903554,0.096446, 592 chr1 993262 993263 rs144099956 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4933.000000,75.000000, 0.985024,0.014976, 592 chr1 993340 993341 rs112238808 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop,maf-5-all-pops 592 chr1 993359 993360 rs13303240 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2492.000000,2516.000000, 0.497604,0.502396, 592 chr1 993382 993383 rs13303023 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 592 chr1 993580 993581 rs72900475 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 385.000000,4623.000000, 0.076877,0.923123, maf-5-some-pop,maf-5-all-pops 592 chr1 993858 993859 rs72900480 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop,maf-5-all-pops 592 chr1 993986 993987 rs59546974 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop,maf-5-all-pops 592 chr1 994331 994332 rs115803283 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop,maf-5-all-pops 592 chr1 994390 994391 rs2488991 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF, 2 G,T, 1133.000000,3875.000000, 0.226238,0.773762, maf-5-some-pop 592 chr1 994395 994396 rs200864565 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,G, 325.000000,4683.000000, 0.064896,0.935104, 592 chr1 994716 994717 rs9697751 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop,maf-5-all-pops 592 chr1 994769 994770 rs9697651 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SSMP,WI_SSAHASNP, 2 A,C, 359.000000,4649.000000, 0.071685,0.928315, 592 chr1 995020 995020 rs557696470 0 + - - -/CGGGGCGTGGCC genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,CGGGGCGTGGCC, 4671.000000,337.000000, 0.932708,0.067292, 592 chr1 995305 995306 rs202014140 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,T, 310.000000,4698.000000, 0.061901,0.938099, 592 chr1 995310 995311 rs115307538 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 592 chr1 995480 995481 rs9442393 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2485.000000,2523.000000, 0.496206,0.503794, maf-5-some-pop 592 chr1 996183 996184 rs9778016 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop,maf-5-all-pops 592 chr1 996247 996248 rs28479311 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4474.000000,534.000000, 0.893371,0.106629, maf-5-some-pop 592 chr1 996284 996285 rs112576163 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 370.000000,4638.000000, 0.073882,0.926118, maf-5-some-pop,maf-5-all-pops 592 chr1 996649 996650 rs145995126 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 996893 996894 rs111280189 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,maf-5-all-pops 592 chr1 997080 997081 rs116307907 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 592 chr1 997436 997462 rs145846158 0 + TCCCTCCCTTGTCCCCGTTCCCTCCG TCCCTCCCTTGTCCCCGTTCCCTCCG -/TCCCTCCCTTGTCCCCGTTCCCTCCG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TCCCTCCCTTGTCCCCGTTCCCTCCG, 4121.000000,887.000000, 0.822883,0.177117, 592 chr1 997769 997770 rs113991671 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP, 2 -,G, 1095.000000,3913.000000, 0.218650,0.781350, 592 chr1 998275 998276 rs60853205 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop,maf-5-all-pops 592 chr1 998394 998395 rs7526076 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 592 chr1 998500 998501 rs3813193 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 1035.000000,3973.000000, 0.206669,0.793331, maf-5-some-pop,maf-5-all-pops 592 chr1 998577 998578 rs7520893 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 C,T, 314.000000,4694.000000, 0.062700,0.937300, maf-5-some-pop,maf-5-all-pops 592 chr1 998581 998582 rs3813194 0 + G G C/G genomic single unknown 0 0 splice-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop 592 chr1 998635 998636 rs72900489 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, 592 chr1 998715 998716 rs117603808 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 998873 998874 rs7526509 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop,maf-5-all-pops 592 chr1 999409 999410 rs114115960 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 592 chr1 999648 999649 rs6683745 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 592 chr1 999997 999998 rs112150631 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 592 chr1 1000909 1000910 rs79750022 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop,maf-5-all-pops 592 chr1 1001176 1001177 rs4970401 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3655.000000,1353.000000, 0.729832,0.270168, 592 chr1 1001269 1001270 rs151100994 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 1001289 1001290 rs6665667 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, 592 chr1 1002386 1002387 rs74048003 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3783.000000,1225.000000, 0.755391,0.244609, maf-5-some-pop,maf-5-all-pops 592 chr1 1002433 1002434 rs11260596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3083.000000,1925.000000, 0.615615,0.384385, maf-5-some-pop,maf-5-all-pops 592 chr1 1002538 1002539 rs60442576 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1718.000000,3290.000000, 0.343051,0.656949, maf-5-some-pop,maf-5-all-pops 592 chr1 1002830 1002831 rs76266214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,EVA-GONL,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 592 chr1 1002931 1002932 rs4246502 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,maf-5-all-pops 592 chr1 1003052 1003053 rs4074992 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2621.000000,2387.000000, 0.523363,0.476637, maf-5-some-pop,maf-5-all-pops 592 chr1 1004201 1004202 rs61766321 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2335.000000,2673.000000, 0.466254,0.533746, maf-5-some-pop,maf-5-all-pops 592 chr1 1004203 1004204 rs61766322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2335.000000,2673.000000, 0.466254,0.533746, maf-5-some-pop,maf-5-all-pops 592 chr1 1004330 1004331 rs113592356 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 592 chr1 1004389 1004389 rs138373747 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 2312.000000,2696.000000, 0.461661,0.538339, 592 chr1 1004399 1004400 rs185439542 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 592 chr1 1004459 1004460 rs577718570 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1004945 1004946 rs4073175 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 592 chr1 1004956 1004957 rs4073176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 592 chr1 1004979 1004980 rs4073177 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 592 chr1 1005805 1005806 rs3934834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PAGE_STUDY,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops,microattr-tpa 592 chr1 1006068 1006069 rs55918415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 592 chr1 1006149 1006150 rs116413370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 592 chr1 1006222 1006223 rs9442394 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops 592 chr1 1006480 1006481 rs72900494 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop,maf-5-all-pops 592 chr1 1006512 1006513 rs72900497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, 592 chr1 1006803 1006804 rs142774611 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1006989 1006990 rs4326571 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4088.000000,920.000000, 0.816294,0.183706, maf-5-some-pop,maf-5-all-pops 592 chr1 1007202 1007203 rs4633229 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop,maf-5-all-pops 592 chr1 1007221 1007222 rs71628928 0 + G G G/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 G,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop,maf-5-all-pops 592 chr1 1007431 1007432 rs4333796 0 + G G A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2665.000000,2343.000000, 0.532149,0.467851, maf-5-some-pop,maf-5-all-pops 592 chr1 1007432 1007433 rs185263154 0 + C C C/T genomic single unknown 0 0 missense exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1008193 1008194 rs56945342 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 592 chr1 1008627 1008628 rs140108519 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1008991 1008992 rs114845730 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,maf-5-all-pops 592 chr1 1009222 1009223 rs112570765 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 592 chr1 1009233 1009234 rs9442366 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2900.000000,2108.000000, 0.579073,0.420927, maf-5-some-pop,maf-5-all-pops 592 chr1 1009240 1009241 rs116110450 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 592 chr1 1009440 1009441 rs75479766 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 592 chr1 1009477 1009478 rs9442367 0 + G G C/G genomic single unknown 0 0 untranslated-5 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop,maf-5-all-pops 592 chr1 1009725 1009725 rs143529814 0 + - - -/GGTCATGCT genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,GGTCATGCT, 4753.000000,255.000000, 0.949081,0.050919, 592 chr1 1009822 1009823 rs12752391 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 995.000000,4013.000000, 0.198682,0.801318, maf-5-some-pop,maf-5-all-pops 592 chr1 1010117 1010118 rs80254000 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 592 chr1 1010208 1010209 rs76128928 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop 592 chr1 1010258 1010259 rs75511034 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 592 chr1 1010716 1010717 rs9442368 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1954.000000,3054.000000, 0.390176,0.609824, maf-5-some-pop,maf-5-all-pops 592 chr1 1010829 1010830 rs78919234 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop,maf-5-all-pops 592 chr1 1010858 1010859 rs112343466 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 592 chr1 1010870 1010871 rs111940947 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 592 chr1 1011087 1011088 rs60561655 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BL,BUSHMAN,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,G, 2711.000000,2297.000000, 0.541334,0.458666, 592 chr1 1011094 1011095 rs11810785 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP, 2 A,G, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop 592 chr1 1011424 1011425 rs137870362 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 397.000000,4611.000000, 0.079273,0.920727, 592 chr1 1011466 1011467 rs201984871 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,GMI, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 592 chr1 1011560 1011561 rs114079151 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 592 chr1 1012438 1012439 rs574957901 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 845.000000,4163.000000, 0.168730,0.831270, 592 chr1 1012482 1012483 rs78463107 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SSMP, 2 G,T, 1166.000000,3842.000000, 0.232827,0.767173, 592 chr1 1012516 1012517 rs79860808 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,T, 1506.000000,3502.000000, 0.300719,0.699281, 592 chr1 1012546 1012547 rs368701521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 C,T, 341.000000,4667.000000, 0.068091,0.931909, 592 chr1 1012624 1012625 rs529739118 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 3683.000000,1325.000000, 0.735423,0.264577, 592 chr1 1012630 1012631 rs374305877 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,T, 3703.000000,1305.000000, 0.739417,0.260583, 592 chr1 1012662 1012663 rs373871345 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 871.000000,4137.000000, 0.173922,0.826078, 592 chr1 1012858 1012859 rs532441972 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, 592 chr1 1012962 1012963 rs78226968 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 G,T, 110.000000,4898.000000, 0.021965,0.978035, 592 chr1 1013428 1013429 rs367617513 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 151.000000,4857.000000, 0.030152,0.969848, 592 chr1 1014835 1014836 rs12401605 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 2279.000000,2729.000000, 0.455072,0.544928, maf-5-some-pop,maf-5-all-pops 592 chr1 1014863 1014864 rs12411041 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 A,T, 2952.000000,2056.000000, 0.589457,0.410543, maf-5-some-pop,maf-5-all-pops 592 chr1 1014954 1014955 rs4970402 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,WI_SSAHASNP, 2 C,G, 132.000000,4876.000000, 0.026358,0.973642, 592 chr1 1015256 1015257 rs9442369 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,maf-5-all-pops 592 chr1 1015550 1015551 rs9442370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2344.000000,2664.000000, 0.468051,0.531949, maf-5-some-pop,maf-5-all-pops 592 chr1 1015717 1015718 rs57133173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 592 chr1 1015816 1015817 rs12746483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3814.000000,1194.000000, 0.761581,0.238419, maf-5-some-pop,maf-5-all-pops 592 chr1 1016382 1016383 rs12092234 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 C,T, 305.000000,4703.000000, 0.060903,0.939097, maf-5-some-pop,maf-5-all-pops 592 chr1 1016532 1016532 rs113519695 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,G, 4733.000000,275.000000, 0.945088,0.054912, 592 chr1 1016626 1016627 rs112489938 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 592 chr1 1016871 1016872 rs6604975 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 592 chr1 1016966 1016967 rs6604976 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 592 chr1 1017169 1017170 rs3766193 0 - C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 1017215 1017216 rs6667248 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,maf-5-all-pops 592 chr1 1017597 1017598 rs12096277 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop,maf-5-all-pops 592 chr1 1017705 1017706 rs74048004 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,ILLUMINA-UK, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 592 chr1 1017896 1017897 rs115869840 0 + C C A/C genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 592 chr1 1018062 1018063 rs138543362 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 592 chr1 1018143 1018144 rs9442395 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 2693.000000,2315.000000, 0.537740,0.462260, maf-5-some-pop,maf-5-all-pops 592 chr1 1018597 1018598 rs77980035 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 592 chr1 1018774 1018775 rs144363468 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 1019174 1019175 rs2298215 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 1019179 1019180 rs9442396 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops 592 chr1 1019985 1019986 rs184920447 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 592 chr1 1020285 1020286 rs80085251 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 592 chr1 1020405 1020406 rs9442397 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3573.000000,1435.000000, 0.713458,0.286542, maf-5-some-pop,maf-5-all-pops 592 chr1 1020699 1020700 rs78152835 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 592 chr1 1020713 1020714 rs7549954 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 592 chr1 1020882 1020883 rs139568537 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 146.000000,4862.000000, 0.029153,0.970847, 592 chr1 1020923 1020923 rs70949550 0 + - - -/G genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,TISHKOFF, 2 -,G, 1482.000000,3526.000000, 0.295927,0.704073, 592 chr1 1021582 1021583 rs10907178 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4138.000000,870.000000, 0.826278,0.173722, maf-5-some-pop,maf-5-all-pops 592 chr1 1021657 1021658 rs11260588 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 592 chr1 1022036 1022037 rs6701114 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2070.000000,2938.000000, 0.413339,0.586661, maf-5-some-pop,maf-5-all-pops 592 chr1 1022128 1022129 rs115375339 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 592 chr1 1022153 1022154 rs115057577 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 592 chr1 1022200 1022201 rs138512905 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 1022975 1022976 rs61743004 0 + G G C/G genomic single by-frequency 0.064444 0.167538 coding-synon,ncRNA exact 1 1 CORNELL, 2 C,G, 58.000000,2.000000, 0.966667,0.033333, 592 chr1 1023113 1023114 rs61766340 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 592 chr1 1023309 1023310 rs11260589 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop,maf-5-all-pops 592 chr1 1023787 1023788 rs12132100 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4257.000000,751.000000, 0.850040,0.149960, maf-5-some-pop,maf-5-all-pops 592 chr1 1024478 1024479 rs74443381 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 592 chr1 1024783 1024784 rs75864872 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 592 chr1 1025269 1025270 rs72631896 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 592 chr1 1025300 1025301 rs9442400 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 592 chr1 1025358 1025359 rs80125497 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 116.000000,2.000000, 0.983051,0.016949, 592 chr1 1025858 1025859 rs28469423 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 C,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 592 chr1 1025907 1025908 rs78662953 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, 592 chr1 1026070 1026071 rs112305311 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 A,C, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 1026427 1026428 rs116334314 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 592 chr1 1026706 1026707 rs4074137 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 A,C, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop 592 chr1 1026800 1026801 rs4562563 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSAHASNP, 2 A,T, 3138.000000,1870.000000, 0.626597,0.373403, maf-5-some-pop,maf-5-all-pops 592 chr1 1027069 1027070 rs11260590 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop,maf-5-all-pops 592 chr1 1027123 1027124 rs190642928 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 592 chr1 1027310 1027312 rs5772036 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AG, 304.000000,4704.000000, 0.060703,0.939297, 592 chr1 1027723 1027724 rs115495822 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 1027734 1027735 rs78152184 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 592 chr1 1027845 1027846 rs76994018 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 1547.000000,3461.000000, 0.308906,0.691094, maf-5-some-pop,maf-5-all-pops 592 chr1 1028258 1028259 rs12077244 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4025.000000,983.000000, 0.803714,0.196286, maf-5-some-pop,maf-5-all-pops 592 chr1 1028303 1028304 rs114918391 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 592 chr1 1028804 1028805 rs75878198 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 592 chr1 1029804 1029805 rs6689308 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3427.000000,1581.000000, 0.684305,0.315695, maf-5-some-pop,maf-5-all-pops 592 chr1 1030314 1030315 rs58394566 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 592 chr1 1030373 1030374 rs12731175 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop 592 chr1 1030632 1030633 rs6678318 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1535.000000,3473.000000, 0.306510,0.693490, maf-5-some-pop,maf-5-all-pops 592 chr1 1030900 1030901 rs75493061 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 1031059 1031060 rs7545952 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4419.000000,589.000000, 0.882388,0.117612, maf-5-some-pop 592 chr1 1031137 1031138 rs6693112 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,HGSV, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 592 chr1 1031340 1031341 rs114586091 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 1031539 1031540 rs9651273 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop 592 chr1 1031972 1031973 rs9651270 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 592 chr1 1031976 1031977 rs9651271 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,T, 4354.000000,654.000000, 0.869409,0.130591, maf-5-some-pop,maf-5-all-pops 592 chr1 1032164 1032165 rs12027296 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 592 chr1 1032183 1032184 rs9651272 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop 592 chr1 1032387 1032388 rs71628929 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 373.000000,4635.000000, 0.074481,0.925519, maf-5-some-pop,maf-5-all-pops 592 chr1 1032953 1032954 rs6699750 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 3439.000000,1569.000000, 0.686701,0.313299, maf-5-some-pop,maf-5-all-pops 592 chr1 1033595 1033596 rs6604964 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1561.000000,3447.000000, 0.311701,0.688299, 592 chr1 1033625 1033626 rs6604965 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop,maf-5-all-pops 592 chr1 1033669 1033670 rs6604966 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1582.000000,3426.000000, 0.315895,0.684105, maf-5-some-pop,maf-5-all-pops 592 chr1 1033679 1033680 rs6604967 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1561.000000,3447.000000, 0.311701,0.688299, maf-5-some-pop,maf-5-all-pops 592 chr1 1033993 1033994 rs6698368 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3448.000000,1560.000000, 0.688498,0.311502, maf-5-some-pop,maf-5-all-pops 592 chr1 1033998 1033999 rs4970353 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2298.000000,2710.000000, 0.458866,0.541134, maf-5-some-pop 592 chr1 1034199 1034200 rs77977351 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1560.000000,3448.000000, 0.311502,0.688498, maf-5-some-pop,maf-5-all-pops 592 chr1 1034242 1034243 rs79211741 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4278.000000,730.000000, 0.854233,0.145767, maf-5-some-pop,maf-5-all-pops 592 chr1 1034471 1034472 rs549140997 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 1034498 1034499 rs111531431 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP, 2 G,T, 3441.000000,1567.000000, 0.687101,0.312899, 592 chr1 1034532 1034535 rs577616292 0 + TAT TAT -/TAT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TAT, 101.000000,4907.000000, 0.020168,0.979832, 592 chr1 1034536 1034537 rs74588600 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, 592 chr1 1034568 1034569 rs113840254 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,G, 4789.000000,219.000000, 0.956270,0.043730, 592 chr1 1034688 1034689 rs113289547 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,GMI,SSMP, 2 G,T, 1536.000000,3472.000000, 0.306709,0.693291, 592 chr1 1034720 1034721 rs74048009 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,GMI,ILLUMINA-UK,SSMP, 2 C,T, 1512.000000,3496.000000, 0.301917,0.698083, 592 chr1 1034836 1034837 rs12753878 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSAHASNP,SSMP, 2 G,T, 3460.000000,1548.000000, 0.690895,0.309105, 592 chr1 1034875 1034876 rs528477953 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 1034927 1034928 rs201161034 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 4211.000000,797.000000, 0.840855,0.159145, 592 chr1 1034928 1034929 rs202164840 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 797.000000,4211.000000, 0.159145,0.840855, 592 chr1 1035804 1035805 rs12759295 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 808.000000,4200.000000, 0.161342,0.838658, maf-5-some-pop,maf-5-all-pops 592 chr1 1036589 1036590 rs10158726 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,WUGSC_SSAHASNP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 592 chr1 1036600 1036601 rs72910156 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, 592 chr1 1036816 1036817 rs61766341 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 538.000000,4470.000000, 0.107428,0.892572, maf-5-some-pop,maf-5-all-pops 592 chr1 1036859 1036860 rs11579922 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,C, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 592 chr1 1036958 1036959 rs11579015 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 786.000000,4222.000000, 0.156949,0.843051, maf-5-some-pop,maf-5-all-pops 592 chr1 1037046 1037047 rs12134754 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop,maf-5-all-pops 592 chr1 1037302 1037303 rs11260592 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 592 chr1 1037312 1037313 rs11260593 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3551.000000,1457.000000, 0.709065,0.290935, maf-5-some-pop,maf-5-all-pops 592 chr1 1037366 1037367 rs11260594 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1349.000000,3659.000000, 0.269369,0.730631, 592 chr1 1038087 1038088 rs66622470 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1417.000000,3591.000000, 0.282947,0.717053, 592 chr1 1038333 1038334 rs147151733 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 592 chr1 1038976 1038977 rs9729587 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,SSAHASNP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 592 chr1 1038997 1039000 rs71576598 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,CTC, 1416.000000,3592.000000, 0.282748,0.717252, 592 chr1 1039097 1039098 rs11260595 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 592 chr1 1039184 1039185 rs12040819 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop 592 chr1 1039267 1039268 rs9329410 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1418.000000,3590.000000, 0.283147,0.716853, maf-5-some-pop,maf-5-all-pops 592 chr1 1039533 1039534 rs111420185 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4813.000000,195.000000, 0.961062,0.038938, 592 chr1 1039816 1039817 rs11581598 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3590.000000,1418.000000, 0.716853,0.283147, maf-5-some-pop,maf-5-all-pops 592 chr1 1039856 1039857 rs74464172 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 1039952 1039953 rs75307222 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 592 chr1 1040025 1040026 rs6671356 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1417.000000,3591.000000, 0.282947,0.717053, maf-5-some-pop,maf-5-all-pops 592 chr1 1040417 1040418 rs77147003 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 592 chr1 1040471 1040472 rs6664124 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3590.000000,1418.000000, 0.716853,0.283147, maf-5-some-pop,maf-5-all-pops 592 chr1 1040592 1040593 rs76287845 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 592 chr1 1040793 1040794 rs6687681 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1408.000000,3600.000000, 0.281150,0.718850, maf-5-some-pop,maf-5-all-pops 592 chr1 1040823 1040824 rs6656379 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 592 chr1 1040885 1040885 rs112666407 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BUSHMAN, 2 -,A, 4925.000000,83.000000, 0.983427,0.016573, 592 chr1 1040939 1040940 rs6702072 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 592 chr1 1040984 1040985 rs6697379 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 592 chr1 1041119 1041119 rs71576600 0 + - - -/GGCGTGGT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,GGCGTGGT, 3592.000000,1416.000000, 0.717252,0.282748, 592 chr1 1041365 1041366 rs114671414 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 592 chr1 1041699 1041700 rs6604968 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 592 chr1 1041785 1041786 rs6604969 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop,maf-5-all-pops 592 chr1 1042026 1042028 rs112018535 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CA, 72.000000,4936.000000, 0.014377,0.985623, 592 chr1 1042058 1042059 rs114521263 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 1042377 1042378 rs12754457 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3580.000000,1428.000000, 0.714856,0.285144, maf-5-some-pop,maf-5-all-pops 592 chr1 1042393 1042394 rs116111284 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 592 chr1 1042482 1042483 rs12733365 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 592 chr1 1042526 1042527 rs12729537 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop,maf-5-all-pops 592 chr1 1042672 1042673 rs57879151 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 3570.000000,1438.000000, 0.712859,0.287141, 592 chr1 1042818 1042819 rs11584516 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 592 chr1 1042926 1042927 rs4970354 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3591.000000,1417.000000, 0.717053,0.282947, maf-5-some-pop,maf-5-all-pops 592 chr1 1043052 1043053 rs4970355 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3591.000000,1417.000000, 0.717053,0.282947, 592 chr1 1043218 1043218 rs201697421 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4939.000000,69.000000, 0.986222,0.013778, 592 chr1 1043261 1043262 rs4970356 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1417.000000,3591.000000, 0.282947,0.717053, 592 chr1 1043621 1043622 rs6697678 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele 0.42 0.183303 intron exact 1 2 BCM_SSAHASNP,ENSEMBL, 2 A,G, 7.000000,3.000000, 0.700000,0.300000, 592 chr1 1043623 1043624 rs6666617 0 + T T C/T genomic single by-cluster,by-frequency,by-2hit-2allele 0.42 0.183303 intron exact 1 2 BCM_SSAHASNP,ENSEMBL, 2 C,T, 7.000000,3.000000, 0.700000,0.300000, 592 chr1 1043736 1043737 rs76099452 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 871.000000,4137.000000, 0.173922,0.826078, 592 chr1 1043742 1043743 rs12751333 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP, 2 C,T, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 592 chr1 1043887 1043888 rs533133628 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 592 chr1 1043899 1043900 rs36030198 0 - C C A/G genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 4 ABI,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 4.000000,6.000000, 0.400000,0.600000, 592 chr1 1044086 1044087 rs66479107 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 1411.000000,3597.000000, 0.281749,0.718251, 592 chr1 1044143 1044144 rs71509467 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HUMANGENOME_JCVI, 2 C,T, 1192.000000,3816.000000, 0.238019,0.761981, 592 chr1 1044241 1044242 rs556271820 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1266.000000,3742.000000, 0.252796,0.747204, 592 chr1 1044318 1044319 rs80109121 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 3969.000000,1039.000000, 0.792532,0.207468, 592 chr1 1044366 1044367 rs59036606 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP, 2 A,G, 1419.000000,3589.000000, 0.283347,0.716653, 592 chr1 1044423 1044424 rs57107904 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,SSMP, 2 C,T, 1415.000000,3593.000000, 0.282548,0.717452, 592 chr1 1045179 1045180 rs75048257 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 1045472 1045473 rs11586034 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 592 chr1 1045537 1045538 rs11811175 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 592 chr1 1045605 1045606 rs12080505 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,maf-5-all-pops 592 chr1 1045838 1045839 rs78242240 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 592 chr1 1045870 1045871 rs12047655 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,maf-5-all-pops 592 chr1 1046072 1046073 rs11590188 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1222.000000,3786.000000, 0.244010,0.755990, maf-5-some-pop,maf-5-all-pops 592 chr1 1046163 1046164 rs6666280 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3594.000000,1414.000000, 0.717652,0.282348, maf-5-some-pop,maf-5-all-pops 592 chr1 1046716 1046717 rs34820586 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 1046860 1046861 rs12723165 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops 592 chr1 1047019 1047020 rs76722543 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 592 chr1 1047027 1047028 rs115393237 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 592 chr1 1047152 1047153 rs115898821 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 592 chr1 1047332 1047333 rs74721821 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 592 chr1 1047980 1047981 rs11584392 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 592 chr1 1048500 1048501 rs7518814 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1220.000000,3788.000000, 0.243610,0.756390, 592 chr1 1048569 1048570 rs576270230 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 592 chr1 1048570 1048571 rs7534657 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3788.000000,1220.000000, 0.756390,0.243610, 593 chr1 1048639 1048640 rs111483565 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop,maf-5-all-pops 593 chr1 1048723 1048724 rs72892214 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 593 chr1 1048954 1048955 rs4970405 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 593 chr1 1048988 1048989 rs4970406 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop,maf-5-all-pops 593 chr1 1049320 1049321 rs187044284 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, 593 chr1 1049382 1049383 rs191490653 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 593 chr1 1049522 1049523 rs12093451 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 593 chr1 1050148 1050149 rs57323758 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 593 chr1 1050263 1050264 rs114053014 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 593 chr1 1050477 1050478 rs116463471 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4937.000000,71.000000, 0.985823,0.014177, 593 chr1 1050546 1050546 rs573248991 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 4285.000000,723.000000, 0.855631,0.144369, 593 chr1 1050700 1050701 rs72892220 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop,maf-5-all-pops 593 chr1 1050998 1050999 rs538430583 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4382.000000,626.000000, 0.875000,0.125000, 593 chr1 1050999 1051000 rs555334823 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 626.000000,4382.000000, 0.125000,0.875000, 593 chr1 1051062 1051063 rs575055657 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 524.000000,4484.000000, 0.104633,0.895367, 593 chr1 1051683 1051684 rs72892222 0 + A A A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop,maf-5-all-pops 593 chr1 1051868 1051869 rs6658634 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 445.000000,4563.000000, 0.088858,0.911142, 593 chr1 1051881 1051882 rs543813206 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSIP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 593 chr1 1052107 1052108 rs6673257 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCM_SSAHASNP,ILLUMINA, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,maf-5-all-pops 593 chr1 1052371 1052372 rs112308346 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops 593 chr1 1052945 1052946 rs12755848 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop,maf-5-all-pops 593 chr1 1052986 1052987 rs113032206 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 593 chr1 1053384 1053385 rs4970408 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1642.000000,3366.000000, 0.327875,0.672125, maf-5-some-pop 593 chr1 1053451 1053452 rs4970409 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 682.000000,4326.000000, 0.136182,0.863818, maf-5-some-pop 593 chr1 1053569 1053570 rs12087991 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_SNP, 2 G,T, 4936.000000,72.000000, 0.985623,0.014377, 593 chr1 1053669 1053670 rs4970410 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1416.000000,3592.000000, 0.282748,0.717252, maf-5-some-pop,maf-5-all-pops 593 chr1 1053723 1053724 rs4970411 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop,maf-5-all-pops 593 chr1 1053794 1053795 rs113130159 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 593 chr1 1053827 1053827 rs5772037 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4310.000000,698.000000, 0.860623,0.139377, 593 chr1 1053870 1053871 rs6683091 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 546.000000,4462.000000, 0.109026,0.890974, maf-5-some-pop,maf-5-all-pops 593 chr1 1054075 1054076 rs1105065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3610.000000,1398.000000, 0.720847,0.279153, maf-5-some-pop,maf-5-all-pops 593 chr1 1054158 1054159 rs58753449 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,T, 4307.000000,701.000000, 0.860024,0.139976, maf-5-some-pop,maf-5-all-pops 593 chr1 1054211 1054212 rs59525363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4461.000000,547.000000, 0.890775,0.109225, maf-5-some-pop,maf-5-all-pops 593 chr1 1054214 1054215 rs58087574 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop,maf-5-all-pops 593 chr1 1054551 1054552 rs12567697 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop,maf-5-all-pops 593 chr1 1054670 1054676 rs377610717 0 + TATGTT TATGTT -/TATGTT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,TATGTT, 63.000000,4945.000000, 0.012580,0.987420, 593 chr1 1054740 1054741 rs78129219 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 593 chr1 1054742 1054743 rs57414802 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4308.000000,700.000000, 0.860224,0.139776, maf-5-some-pop,maf-5-all-pops 593 chr1 1054805 1054806 rs74586415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 593 chr1 1054893 1054894 rs58537573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB, 2 A,G, 553.000000,4455.000000, 0.110423,0.889577, maf-5-some-pop,maf-5-all-pops 593 chr1 1054988 1054990 rs149077107 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AG, 106.000000,4902.000000, 0.021166,0.978834, 593 chr1 1055015 1055016 rs75418966 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 593 chr1 1055427 1055428 rs541096059 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 1261.000000,3747.000000, 0.251797,0.748203, 593 chr1 1055652 1055653 rs34808604 0 - C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1055796 1055797 rs76744376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 593 chr1 1055876 1055877 rs374041777 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4937.000000,71.000000, 0.985823,0.014177, 593 chr1 1055900 1055901 rs74865318 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,maf-5-all-pops 593 chr1 1056005 1056006 rs72892233 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop,maf-5-all-pops 593 chr1 1056150 1056151 rs113477232 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 553.000000,4455.000000, 0.110423,0.889577, 593 chr1 1056196 1056197 rs148130682 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 593 chr1 1056200 1056201 rs141947323 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 553.000000,4455.000000, 0.110423,0.889577, 593 chr1 1056262 1056263 rs113777659 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 593 chr1 1056268 1056269 rs71628940 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4271.000000,737.000000, 0.852835,0.147165, 593 chr1 1056270 1056270 rs201129414 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4924.000000,84.000000, 0.983227,0.016773, 593 chr1 1056292 1056296 rs151161169 0 + AAAA AAAA -/AAAA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AAAA, 101.000000,4907.000000, 0.020168,0.979832, 593 chr1 1056347 1056348 rs66868065 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 593 chr1 1056575 1056576 rs76533537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 593 chr1 1056652 1056653 rs114540904 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 593 chr1 1056714 1056715 rs7538862 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3571.000000,1437.000000, 0.713059,0.286941, maf-5-some-pop,maf-5-all-pops 593 chr1 1056732 1056733 rs74048010 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 593 chr1 1056938 1056939 rs12726341 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,maf-5-all-pops 593 chr1 1057398 1057398 rs200149901 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CT, 4936.000000,72.000000, 0.985623,0.014377, 593 chr1 1057421 1057422 rs74977732 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop,maf-5-all-pops 593 chr1 1057507 1057508 rs75135491 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 593 chr1 1057523 1057524 rs74535970 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 593 chr1 1058513 1058514 rs79168258 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 593 chr1 1058767 1058768 rs113419523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 593 chr1 1058918 1058919 rs535350689 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 593 chr1 1058924 1058925 rs555360438 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 224.000000,4784.000000, 0.044728,0.955272, 593 chr1 1058925 1058926 rs572070238 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 224.000000,4784.000000, 0.044728,0.955272, 593 chr1 1058948 1058949 rs534834785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, 593 chr1 1058951 1058952 rs557828959 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 261.000000,4747.000000, 0.052117,0.947883, 593 chr1 1058963 1058964 rs559319328 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 593 chr1 1058968 1058969 rs111803029 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, 593 chr1 1058977 1058978 rs72892239 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop,maf-5-all-pops 593 chr1 1059059 1059060 rs149229450 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 593 chr1 1059268 1059269 rs111163132 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4317.000000,691.000000, 0.862021,0.137979, maf-5-some-pop,maf-5-all-pops 593 chr1 1059269 1059270 rs11808877 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop,maf-5-all-pops 593 chr1 1059404 1059405 rs112557070 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4317.000000,691.000000, 0.862021,0.137979, 593 chr1 1059448 1059449 rs548897206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 593 chr1 1059607 1059608 rs113030431 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 593 chr1 1059672 1059673 rs111981156 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 593 chr1 1060042 1060043 rs11586617 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops 593 chr1 1060147 1060148 rs11587937 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,maf-5-all-pops 593 chr1 1060163 1060164 rs75231039 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 593 chr1 1060174 1060175 rs7556082 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2496.000000,2512.000000, 0.498403,0.501597, maf-5-some-pop,maf-5-all-pops 593 chr1 1060234 1060235 rs7540009 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 593 chr1 1060354 1060355 rs12567855 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,G, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 593 chr1 1060507 1060507 rs148731474 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 4721.000000,287.000000, 0.942692,0.057308, 593 chr1 1060815 1060816 rs75112400 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 593 chr1 1061114 1061115 rs17160826 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop,maf-5-all-pops 593 chr1 1061151 1061152 rs12748370 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 593 chr1 1061201 1061202 rs115474087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1061261 1061262 rs12757754 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop,maf-5-all-pops 593 chr1 1061507 1061508 rs12736814 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop,maf-5-all-pops 593 chr1 1061512 1061513 rs6672026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 593 chr1 1061673 1061674 rs116007048 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 593 chr1 1062014 1062015 rs9659914 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 C,T, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop 593 chr1 1062024 1062025 rs9329411 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3327.000000,1681.000000, 0.664337,0.335663, maf-5-some-pop,maf-5-all-pops 593 chr1 1062289 1062290 rs11260597 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,maf-5-all-pops 593 chr1 1062308 1062309 rs111584056 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 100.000000,4908.000000, 0.019968,0.980032, 593 chr1 1062428 1062429 rs112363166 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 136.000000,4872.000000, 0.027157,0.972844, 593 chr1 1062464 1062464 rs139701761 0 + - - -/TACCTGAA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TACCTGAA, 4872.000000,136.000000, 0.972844,0.027157, 593 chr1 1062637 1062638 rs9442373 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2876.000000,2132.000000, 0.574281,0.425719, maf-5-some-pop,maf-5-all-pops 593 chr1 1063043 1063044 rs7545801 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops 593 chr1 1063144 1063145 rs7532626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, 593 chr1 1063240 1063241 rs4970413 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 593 chr1 1063278 1063279 rs58167719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,HGSV, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 593 chr1 1063587 1063588 rs149175049 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 593 chr1 1064534 1064535 rs6682475 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3468.000000,1540.000000, 0.692492,0.307508, maf-5-some-pop,maf-5-all-pops 593 chr1 1064669 1064670 rs7547403 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, 593 chr1 1064801 1064802 rs2298216 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3963.000000,1045.000000, 0.791334,0.208666, maf-5-some-pop,maf-5-all-pops 593 chr1 1064978 1064979 rs2298217 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,YUSUKE, 2 C,T, 4183.000000,825.000000, 0.835264,0.164736, maf-5-some-pop 593 chr1 1065130 1065131 rs12066903 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop,maf-5-all-pops 593 chr1 1065229 1065230 rs78683216 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 593 chr1 1065295 1065296 rs4072537 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops 593 chr1 1065435 1065436 rs4072538 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 305.000000,4703.000000, 0.060903,0.939097, 593 chr1 1065497 1065498 rs116408522 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 593 chr1 1065725 1065726 rs11260598 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,maf-5-all-pops 593 chr1 1065799 1065800 rs11580120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4523.000000,485.000000, 0.903155,0.096845, maf-5-some-pop 593 chr1 1065814 1065815 rs72892262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1065857 1065858 rs11260600 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,SC_SNP, 2 G,T, 4481.000000,527.000000, 0.894768,0.105232, 593 chr1 1066086 1066087 rs114751561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 593 chr1 1066095 1066096 rs115331961 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 593 chr1 1066096 1066097 rs61766345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 456.000000,4552.000000, 0.091054,0.908946, maf-5-some-pop,maf-5-all-pops 593 chr1 1066217 1066218 rs72892263 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 593 chr1 1066254 1066255 rs112290374 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 593 chr1 1066256 1066257 rs191250253 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1066258 1066259 rs4072496 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1066281 1066282 rs10907181 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 593 chr1 1066444 1066445 rs113858915 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 593 chr1 1066818 1066819 rs7513297 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,SSAHASNP,WI_SSAHASNP, 2 A,G, 2536.000000,2472.000000, 0.506390,0.493610, 593 chr1 1066827 1066828 rs7553878 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2535.000000,2473.000000, 0.506190,0.493810, 593 chr1 1066945 1066946 rs7513404 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2398.000000,2610.000000, 0.478834,0.521166, 593 chr1 1066952 1066953 rs7516160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2462.000000,2546.000000, 0.491613,0.508387, 593 chr1 1067142 1067143 rs7554175 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop,maf-5-all-pops 593 chr1 1067395 1067396 rs116599930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 593 chr1 1067575 1067576 rs11589263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop,maf-5-all-pops 593 chr1 1067596 1067598 rs141257782 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,AG, 2679.000000,2329.000000, 0.534944,0.465056, 593 chr1 1067864 1067865 rs9442358 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop 593 chr1 1067877 1067878 rs140250292 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 593 chr1 1068189 1068190 rs144200800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 593 chr1 1068279 1068280 rs74048016 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, 593 chr1 1068457 1068458 rs79389248 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 593 chr1 1068832 1068848 rs146603024 0 + GCCGCCTGCCTGCCCG GCCGCCTGCCTGCCCG -/GCCGCCTGCCTGCCCG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,LUNTER, 2 -,GCCGCCTGCCTGCCCG, 2472.000000,2536.000000, 0.493610,0.506390, 593 chr1 1068881 1068882 rs111649740 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 593 chr1 1068882 1068883 rs61766346 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, maf-5-some-pop,maf-5-all-pops 593 chr1 1069186 1069187 rs6699173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 715.000000,4293.000000, 0.142772,0.857228, maf-5-some-pop 593 chr1 1069190 1069191 rs6665076 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, 593 chr1 1069280 1069281 rs9442359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, 593 chr1 1069345 1069346 rs113854344 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4447.000000,561.000000, 0.887979,0.112021, 593 chr1 1069419 1069420 rs112054464 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 1181.000000,3827.000000, 0.235823,0.764177, 593 chr1 1069424 1069425 rs9442375 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2567.000000,2441.000000, 0.512580,0.487420, 593 chr1 1069442 1069443 rs9442376 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2610.000000,2398.000000, 0.521166,0.478834, 593 chr1 1069449 1069450 rs61766348 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3653.000000,1355.000000, 0.729433,0.270567, 593 chr1 1069450 1069451 rs9442377 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2611.000000,2397.000000, 0.521366,0.478634, 593 chr1 1069475 1069482 rs201930395 0 + AAAAAAG AAAAAAG -/AAAAAAG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,AAAAAAG, 3177.000000,1831.000000, 0.634385,0.365615, 593 chr1 1069523 1069523 rs147491073 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,C, 4461.000000,547.000000, 0.890775,0.109225, 593 chr1 1069534 1069535 rs113355263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 593 chr1 1069601 1069602 rs74048017 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,maf-5-all-pops 593 chr1 1069652 1069653 rs71628941 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4095.000000,913.000000, 0.817692,0.182308, maf-5-some-pop,maf-5-all-pops 593 chr1 1069947 1069948 rs192913243 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1070091 1070092 rs111503055 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 593 chr1 1070127 1070128 rs9442378 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSMP, 2 G,T, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 593 chr1 1070440 1070441 rs9442379 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop,maf-5-all-pops 593 chr1 1070466 1070467 rs139475585 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, 593 chr1 1070721 1070722 rs74048019 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop,maf-5-all-pops 593 chr1 1070797 1070798 rs112122435 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 593 chr1 1071045 1071046 rs112551400 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1071117 1071118 rs10907183 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2480.000000,2528.000000, 0.495208,0.504792, maf-5-some-pop,maf-5-all-pops 593 chr1 1071191 1071192 rs6604971 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop,maf-5-all-pops 593 chr1 1071353 1071354 rs113110627 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 593 chr1 1072180 1072181 rs141230226 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, 593 chr1 1072497 1072498 rs9442360 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_SNP,SSMP, 2 C,G, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 593 chr1 1072610 1072610 rs536286840 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4942.000000,66.000000, 0.986821,0.013179, 593 chr1 1072685 1072686 rs182628732 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 288.000000,4720.000000, 0.057508,0.942492, 593 chr1 1073250 1073251 rs11581141 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop 593 chr1 1073766 1073767 rs7521551 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 331.000000,4677.000000, 0.066094,0.933906, 593 chr1 1074146 1074147 rs75421605 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 593 chr1 1074255 1074256 rs61766350 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1073.000000,3935.000000, 0.214257,0.785743, maf-5-some-pop,maf-5-all-pops 593 chr1 1074333 1074334 rs113923786 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, 593 chr1 1074362 1074363 rs72892273 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 593 chr1 1074430 1074431 rs369724700 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4942.000000,66.000000, 0.986821,0.013179, 593 chr1 1074765 1074766 rs74401890 0 + G G A/G genomic single by-frequency 0.32 0.24 intron exact 1 1 ENSEMBL, 2 A,G, 2.000000,8.000000, 0.200000,0.800000, 593 chr1 1075924 1075925 rs375290445 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 2678.000000,2330.000000, 0.534744,0.465256, 593 chr1 1076034 1076035 rs35853231 0 - G G C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,T, 4.000000,6.000000, 0.400000,0.600000, 593 chr1 1076237 1076238 rs28415320 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSAHASNP, 2 C,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,maf-5-all-pops 593 chr1 1077063 1077064 rs4970357 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop,maf-5-all-pops 593 chr1 1077853 1077854 rs146355575 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, 593 chr1 1077961 1077962 rs55750860 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2414.000000,2594.000000, 0.482029,0.517971, maf-5-some-pop,maf-5-all-pops 593 chr1 1078089 1078090 rs76974684 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 593 chr1 1078137 1078138 rs12022640 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BGI,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop,maf-5-all-pops 593 chr1 1078582 1078583 rs12737205 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,SSAHASNP,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 593 chr1 1079190 1079191 rs11260602 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1487.000000,3521.000000, 0.296925,0.703075, maf-5-some-pop,maf-5-all-pops 593 chr1 1079197 1079198 rs11260603 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1520.000000,3488.000000, 0.303514,0.696486, maf-5-some-pop,microattr-tpa 593 chr1 1079260 1079261 rs116661896 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 195.000000,4813.000000, 0.038938,0.961062, 593 chr1 1079865 1079866 rs11260604 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3519.000000,1489.000000, 0.702676,0.297324, maf-5-some-pop,maf-5-all-pops 593 chr1 1080165 1080166 rs115634148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 593 chr1 1080393 1080394 rs138395681 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,WARNICH_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 593 chr1 1080919 1080920 rs77866920 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 5.000000,115.000000, 0.041667,0.958333, 593 chr1 1080926 1080927 rs4512588 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SC_JCM,SSMP, 2 C,T, 2248.000000,2760.000000, 0.448882,0.551118, maf-5-some-pop,maf-5-all-pops 593 chr1 1081051 1081052 rs74045108 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 593 chr1 1081146 1081147 rs148678992 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 216.000000,4792.000000, 0.043131,0.956869, 593 chr1 1081347 1081348 rs112705162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 593 chr1 1081403 1081403 rs142243912 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 4801.000000,207.000000, 0.958666,0.041334, 593 chr1 1081433 1081434 rs79783619 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1081542 1081543 rs56949703 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 593 chr1 1081952 1081953 rs75680022 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 593 chr1 1082231 1082232 rs115655322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 593 chr1 1082333 1082334 rs147851093 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4805.000000,203.000000, 0.959465,0.040535, 593 chr1 1082536 1082537 rs115958433 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 593 chr1 1082572 1082573 rs145224875 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4823.000000,185.000000, 0.963059,0.036941, 593 chr1 1082598 1082599 rs112561969 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, 593 chr1 1082789 1082790 rs75299276 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,SSMP, 2 A,C, 679.000000,4329.000000, 0.135583,0.864417, 593 chr1 1082797 1082798 rs111341881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 699.000000,4309.000000, 0.139577,0.860423, 593 chr1 1082828 1082829 rs143087458 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, 593 chr1 1082892 1082893 rs114870853 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4803.000000,205.000000, 0.959065,0.040934, 593 chr1 1083046 1083047 rs76134022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop,maf-5-all-pops 593 chr1 1083055 1083056 rs80164470 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 593 chr1 1083158 1083159 rs11579425 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 977.000000,4031.000000, 0.195088,0.804912, maf-5-some-pop 593 chr1 1083355 1083356 rs114268825 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4805.000000,203.000000, 0.959465,0.040535, 593 chr1 1083692 1083693 rs115251198 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 593 chr1 1083826 1083827 rs77446382 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 593 chr1 1083949 1083950 rs115329223 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1083998 1083999 rs7520581 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 593 chr1 1084178 1084179 rs115360468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,maf-5-all-pops 593 chr1 1084475 1084476 rs144029782 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 216.000000,4792.000000, 0.043131,0.956869, 593 chr1 1084614 1084615 rs116667486 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 G,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 593 chr1 1084717 1084718 rs76498420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 593 chr1 1084793 1084794 rs116009746 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 593 chr1 1084802 1084803 rs79543316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 593 chr1 1084981 1084982 rs78344829 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, 593 chr1 1084989 1084990 rs367834221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 593 chr1 1085155 1085156 rs116077260 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 593 chr1 1085343 1085344 rs116346038 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 593 chr1 1085415 1085416 rs115652917 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 593 chr1 1085545 1085546 rs139574397 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, 593 chr1 1085784 1085785 rs78734062 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop 593 chr1 1085992 1085993 rs149680587 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, 593 chr1 1086178 1086179 rs61766352 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 593 chr1 1086422 1086423 rs76054198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 593 chr1 1086481 1086482 rs75418582 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 593 chr1 1086772 1086773 rs6690067 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop,maf-5-all-pops 593 chr1 1086821 1086822 rs6685358 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,G, 4556.000000,452.000000, 0.909744,0.090256, 593 chr1 1086878 1086879 rs150468582 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 214.000000,4794.000000, 0.042732,0.957268, 593 chr1 1086936 1086937 rs115839549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, 593 chr1 1087254 1087255 rs77113560 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 593 chr1 1087427 1087428 rs76759405 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 593 chr1 1087451 1087452 rs114422951 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 593 chr1 1087994 1087995 rs116537379 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop,maf-5-all-pops 593 chr1 1088008 1088009 rs116027526 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 593 chr1 1088027 1088028 rs148703778 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 442.000000,4566.000000, 0.088259,0.911741, 593 chr1 1088088 1088089 rs142163180 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 813.000000,4195.000000, 0.162340,0.837660, 593 chr1 1088122 1088123 rs114421107 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops 593 chr1 1088138 1088139 rs115198770 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 593 chr1 1088313 1088314 rs144052323 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1088391 1088392 rs12060862 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 646.000000,4362.000000, 0.128994,0.871006, 593 chr1 1088533 1088534 rs12060927 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop 593 chr1 1088561 1088562 rs193156954 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4807.000000,201.000000, 0.959864,0.040136, 593 chr1 1088670 1088671 rs11583992 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 3532.000000,1476.000000, 0.705272,0.294728, 593 chr1 1088715 1088716 rs181158859 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4825.000000,183.000000, 0.963458,0.036541, 593 chr1 1088776 1088777 rs113722022 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,maf-5-all-pops 593 chr1 1088787 1088788 rs114500466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 593 chr1 1088864 1088865 rs56085214 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, 593 chr1 1088907 1088908 rs57068258 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 465.000000,4543.000000, 0.092851,0.907149, 593 chr1 1089105 1089106 rs72631897 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 889.000000,4119.000000, 0.177516,0.822484, maf-5-some-pop,maf-5-all-pops 593 chr1 1089147 1089148 rs12061218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 657.000000,4351.000000, 0.131190,0.868810, maf-5-some-pop,maf-5-all-pops 593 chr1 1089698 1089699 rs6686003 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 A,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop 593 chr1 1089829 1089830 rs6700376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop,maf-5-all-pops 593 chr1 1090009 1090010 rs9442361 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,C, 4128.000000,880.000000, 0.824281,0.175719, 593 chr1 1090022 1090023 rs139889540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, 593 chr1 1090316 1090317 rs142055848 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, 593 chr1 1090510 1090511 rs151152279 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, 593 chr1 1090556 1090557 rs7553429 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 593 chr1 1091232 1091233 rs74557760 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 593 chr1 1091312 1091313 rs74045132 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 593 chr1 1091464 1091465 rs74045133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop,maf-5-all-pops 593 chr1 1091504 1091505 rs74045135 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 593 chr1 1091575 1091576 rs74045136 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 A,C, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop,maf-5-all-pops 593 chr1 1091701 1091702 rs74045137 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 593 chr1 1091715 1091716 rs74045138 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 593 chr1 1091826 1091827 rs74045140 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4357.000000,651.000000, 0.870008,0.129992, 593 chr1 1091980 1091981 rs115407553 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 593 chr1 1092070 1092071 rs74045142 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop,maf-5-all-pops 593 chr1 1092147 1092148 rs74045143 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops 593 chr1 1092169 1092170 rs74045144 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 C,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops 593 chr1 1092204 1092205 rs77791262 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4807.000000,201.000000, 0.959864,0.040136, 593 chr1 1092282 1092283 rs114188160 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 593 chr1 1092286 1092287 rs74045145 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,SSMP, 2 A,G, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop,maf-5-all-pops 593 chr1 1092343 1092344 rs115632178 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 4806.000000,202.000000, 0.959665,0.040335, 593 chr1 1092366 1092367 rs113657720 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4145.000000,863.000000, 0.827676,0.172324, maf-5-some-pop,maf-5-all-pops 593 chr1 1092399 1092400 rs74045146 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,SSMP, 2 C,G, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop,maf-5-all-pops 593 chr1 1092423 1092424 rs78975118 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop 593 chr1 1092460 1092461 rs114528345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, 593 chr1 1092469 1092470 rs116414484 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 593 chr1 1092481 1092482 rs115785548 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 593 chr1 1092562 1092563 rs57527288 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 593 chr1 1092588 1092589 rs76537763 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop,maf-5-all-pops 593 chr1 1092598 1092599 rs56863140 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop 593 chr1 1092694 1092695 rs532389173 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 99.000000,4909.000000, 0.019768,0.980232, 593 chr1 1092951 1092952 rs75496439 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 593 chr1 1093232 1093232 rs146445080 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,G, 4806.000000,202.000000, 0.959665,0.040335, 593 chr1 1093468 1093469 rs142557015 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, 593 chr1 1093513 1093514 rs146011697 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 593 chr1 1093783 1093784 rs115569263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 593 chr1 1093835 1093836 rs116816284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 593 chr1 1093854 1093855 rs75873837 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 593 chr1 1093995 1093996 rs547942030 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 192.000000,4816.000000, 0.038339,0.961661, 593 chr1 1094024 1094025 rs116510521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, 593 chr1 1094062 1094063 rs7551688 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1322.000000,3686.000000, 0.263978,0.736022, maf-5-some-pop 593 chr1 1094184 1094185 rs79251457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 593 chr1 1094484 1094485 rs4970360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2331.000000,2677.000000, 0.465455,0.534545, 593 chr1 1094588 1094589 rs142951196 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 191.000000,4817.000000, 0.038139,0.961861, 593 chr1 1094654 1094655 rs147744890 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, 593 chr1 1094671 1094672 rs4970361 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1995.000000,3013.000000, 0.398363,0.601637, 593 chr1 1094978 1094979 rs7538773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2834.000000,2174.000000, 0.565895,0.434105, maf-5-some-pop,maf-5-all-pops 593 chr1 1095080 1095081 rs147938056 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, 593 chr1 1095129 1095130 rs61768477 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 593 chr1 1095287 1095288 rs115765831 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4925.000000,83.000000, 0.983427,0.016573, 593 chr1 1095382 1095383 rs6604973 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3547.000000,1461.000000, 0.708267,0.291733, maf-5-some-pop,maf-5-all-pops 593 chr1 1095619 1095620 rs567921813 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1096010 1096011 rs9442381 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2331.000000,2677.000000, 0.465455,0.534545, maf-5-some-pop,maf-5-all-pops 593 chr1 1096197 1096198 rs9442382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop,maf-5-all-pops 593 chr1 1097286 1097287 rs9442384 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop 593 chr1 1097290 1097291 rs61768478 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop,maf-5-all-pops 593 chr1 1097407 1097411 rs145121017 0 + CCCA CCCA -/CCCA genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,CCCA, 4073.000000,935.000000, 0.813299,0.186701, 593 chr1 1097723 1097724 rs75661872 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 593 chr1 1097992 1097993 rs116380534 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 593 chr1 1098265 1098266 rs147921662 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 593 chr1 1098357 1098358 rs61768479 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 593 chr1 1098420 1098421 rs12135382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 2962.000000,2046.000000, 0.591454,0.408546, maf-5-some-pop,maf-5-all-pops 593 chr1 1098477 1098478 rs78282381 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1098713 1098714 rs4379629 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,G, 2868.000000,2140.000000, 0.572684,0.427316, maf-5-some-pop,maf-5-all-pops 593 chr1 1099276 1099277 rs115150672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 593 chr1 1099341 1099342 rs9660710 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop 593 chr1 1099436 1099437 rs11584885 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop,maf-5-all-pops 593 chr1 1099839 1099840 rs76051810 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 593 chr1 1100523 1100524 rs79776491 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop,maf-5-all-pops 593 chr1 1100856 1100857 rs76791193 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 593 chr1 1101002 1101003 rs7549819 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1014.000000,3994.000000, 0.202476,0.797524, maf-5-some-pop 593 chr1 1101301 1101302 rs80296038 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 593 chr1 1101412 1101413 rs77342103 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop,maf-5-all-pops 593 chr1 1102295 1102296 rs113882248 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, 593 chr1 1102656 1102657 rs140316058 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 593 chr1 1102792 1102793 rs115542311 0 + G G G/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 593 chr1 1103048 1103049 rs114497437 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 593 chr1 1103149 1103150 rs61768480 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop,maf-5-all-pops 593 chr1 1103435 1103436 rs540338709 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1103536 1103537 rs112604916 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, 593 chr1 1103541 1103542 rs7518873 0 + T T C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop 593 chr1 1104116 1104117 rs117987012 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 593 chr1 1104583 1104584 rs112695918 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 370.000000,4638.000000, 0.073882,0.926118, maf-5-some-pop 593 chr1 1104623 1104624 rs146776190 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 593 chr1 1104889 1104890 rs115780854 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 593 chr1 1105237 1105238 rs9442362 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1670.000000,3338.000000, 0.333466,0.666534, maf-5-some-pop,maf-5-all-pops 593 chr1 1105478 1105479 rs116691851 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 593 chr1 1105720 1105721 rs77277598 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop,maf-5-all-pops 593 chr1 1105781 1105782 rs79227320 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop,maf-5-all-pops 593 chr1 1106060 1106061 rs6656236 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 2032.000000,2976.000000, 0.405751,0.594249, maf-5-some-pop,maf-5-all-pops 593 chr1 1106111 1106112 rs6670693 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF, 2 A,G, 3781.000000,1227.000000, 0.754992,0.245008, 593 chr1 1106472 1106473 rs4970420 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 593 chr1 1106758 1106759 rs115111053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 593 chr1 1106772 1106773 rs116787687 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1106783 1106784 rs4442317 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop,maf-5-all-pops 593 chr1 1106928 1106929 rs116660365 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 593 chr1 1107132 1107133 rs76363538 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 593 chr1 1107294 1107294 rs200555874 0 + - - -/C genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,C, 4897.000000,111.000000, 0.977835,0.022164, 593 chr1 1107304 1107305 rs118112965 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4897.000000,111.000000, 0.977835,0.022164, 593 chr1 1107306 1107307 rs117052210 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, 593 chr1 1107358 1107359 rs115656418 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 593 chr1 1107841 1107842 rs11260535 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,G, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,maf-5-all-pops 593 chr1 1108013 1108014 rs142174211 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 593 chr1 1108156 1108172 rs201473200 0 + AATATATAAAATAATA AATATATAAAATAATA -/AATATATAAAATAATA genomic deletion unknown 0 0 near-gene-3,near-gene-5 range 1 1 1000GENOMES, 2 -,AATATATAAAATAATA, 97.000000,4911.000000, 0.019369,0.980631, 593 chr1 1108276 1108277 rs12136529 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1097.000000,3911.000000, 0.219050,0.780950, 593 chr1 1108338 1108339 rs141262787 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1108517 1108518 rs11260536 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops 593 chr1 1108636 1108637 rs4970421 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 13 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 901.000000,4107.000000, 0.179912,0.820088, maf-5-some-pop 593 chr1 1108756 1108757 rs111625258 0 + A A A/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4893.000000,115.000000, 0.977037,0.022963, 593 chr1 1108950 1108951 rs76610658 0 + G G G/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 4954.000000,54.000000, 0.989217,0.010783, 593 chr1 1109103 1109104 rs74045197 0 + G G G/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop,maf-5-all-pops 593 chr1 1109153 1109154 rs12041521 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1215.000000,3793.000000, 0.242612,0.757388, maf-5-some-pop,maf-5-all-pops 593 chr1 1109192 1109193 rs41300088 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SI_EXO, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 593 chr1 1109194 1109195 rs5010608 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 8 1000GENOMES,ABI,BGI,EVA-GONL,ILLUMINA-UK,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 593 chr1 1109251 1109252 rs5010607 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3001.000000,2007.000000, 0.599241,0.400759, maf-5-some-pop,maf-5-all-pops 593 chr1 1109310 1109311 rs5010606 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 11 1000GENOMES,ABI,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 685.000000,4323.000000, 0.136781,0.863219, maf-5-some-pop,maf-5-all-pops 593 chr1 1109314 1109315 rs5010605 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 7 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,G, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop,maf-5-all-pops 593 chr1 1109344 1109345 rs11587345 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1109375 1109376 rs5010604 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 8 1000GENOMES,ABI,BGI,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop,maf-5-all-pops 593 chr1 1109475 1109476 rs12141369 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1052.000000,3956.000000, 0.210064,0.789936, maf-5-some-pop,maf-5-all-pops 593 chr1 1109553 1109554 rs11260537 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,maf-5-all-pops 593 chr1 1109652 1109653 rs11260538 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-5 exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 700.000000,4308.000000, 0.139776,0.860224, maf-5-some-pop,maf-5-all-pops 593 chr1 1109764 1109765 rs72892302 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 593 chr1 1109781 1109782 rs72894004 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 1057.000000,3951.000000, 0.211062,0.788938, maf-5-some-pop,maf-5-all-pops 593 chr1 1109902 1109903 rs11260539 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4446.000000,562.000000, 0.887780,0.112220, maf-5-some-pop,maf-5-all-pops 593 chr1 1109952 1109953 rs11260540 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop,maf-5-all-pops 593 chr1 1109957 1109958 rs11260541 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4333.000000,675.000000, 0.865216,0.134784, maf-5-some-pop,maf-5-all-pops 593 chr1 1110018 1110019 rs11260542 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4284.000000,724.000000, 0.855431,0.144569, maf-5-some-pop 593 chr1 1110069 1110070 rs61768483 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 593 chr1 1110126 1110127 rs11260543 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,BGI,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop,maf-5-all-pops 593 chr1 1110166 1110167 rs115838697 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 593 chr1 1110224 1110225 rs11260544 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop,maf-5-all-pops 593 chr1 1110350 1110351 rs147831049 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 593 chr1 1110367 1110368 rs11260545 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4390.000000,618.000000, 0.876597,0.123403, 593 chr1 1110419 1110420 rs12096422 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 619.000000,4389.000000, 0.123602,0.876398, 593 chr1 1110549 1110550 rs79683784 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 593 chr1 1110556 1110557 rs79295821 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 593 chr1 1110585 1110586 rs9442387 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop 593 chr1 1110754 1110755 rs77408828 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 593 chr1 1110987 1110987 rs138610889 0 + - - -/C genomic insertion unknown 0 0 intron,ncRNA between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSIP,WARNICH_LAB, 2 -,C, 4302.000000,706.000000, 0.859026,0.140974, 593 chr1 1111146 1111147 rs112420268 0 + A A A/C genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1111244 1111245 rs61514045 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,maf-5-all-pops 593 chr1 1111411 1111412 rs542237851 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 593 chr1 1111545 1111546 rs547843360 0 + G G C/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,G, 101.000000,4907.000000, 0.020168,0.979832, 593 chr1 1111575 1111576 rs113564442 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1111624 1111625 rs113088320 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 593 chr1 1111632 1111633 rs375448418 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,G, 4425.000000,583.000000, 0.883586,0.116414, 593 chr1 1111649 1111650 rs112848878 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 593 chr1 1111742 1111743 rs111326580 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 4865.000000,143.000000, 0.971446,0.028554, 593 chr1 1111869 1111870 rs75219155 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1111888 1111906 rs563230438 0 + CACCTTTTCCCACCTCCA CACCTTTTCCCACCTCCA -/CACCTTTTCCCACCTCCA genomic deletion unknown 0 0 intron,cds-indel range 1 1 1000GENOMES, 2 -,CACCTTTTCCCACCTCCA, 80.000000,4928.000000, 0.015974,0.984026, 593 chr1 1111905 1111906 rs541202127 0 + A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,T, 4944.000000,64.000000, 0.987220,0.012780, 593 chr1 1111961 1111962 rs76413434 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 593 chr1 1111986 1111987 rs77063733 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 593 chr1 1112227 1112228 rs72894007 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 593 chr1 1112259 1112260 rs79648303 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 593 chr1 1112306 1112307 rs144945384 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 593 chr1 1112308 1112309 rs9724957 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2121.000000,2887.000000, 0.423522,0.576478, maf-5-some-pop,maf-5-all-pops 593 chr1 1112698 1112698 rs546851646 0 + - - -/T genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,T, 4483.000000,525.000000, 0.895168,0.104832, 593 chr1 1112809 1112810 rs28613513 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,maf-5-all-pops 593 chr1 1112981 1112982 rs6671609 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3681.000000,1327.000000, 0.735024,0.264976, 593 chr1 1113120 1113121 rs12092254 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop 593 chr1 1113393 1113394 rs12097428 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop,maf-5-all-pops 593 chr1 1113500 1113501 rs113136607 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 593 chr1 1113570 1113571 rs12058450 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4229.000000,779.000000, 0.844449,0.155551, maf-5-some-pop,maf-5-all-pops 593 chr1 1114110 1114111 rs111388390 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 593 chr1 1114523 1114524 rs368507121 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 593 chr1 1114667 1114668 rs6668667 0 + G G A/G genomic single unknown 0 0 near-gene-5,missense exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 536.000000,4472.000000, 0.107029,0.892971, maf-5-some-pop 593 chr1 1114746 1114747 rs75179781 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,C, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 593 chr1 1115209 1115210 rs11260546 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop,maf-5-all-pops 593 chr1 1115212 1115213 rs11260547 0 + G G G/T genomic single unknown 0 0 intron,untranslated-5 exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,maf-5-all-pops 593 chr1 1115221 1115222 rs79637846 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 593 chr1 1115378 1115379 rs111649714 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 593 chr1 1115414 1115415 rs57556493 0 + C C C/T genomic single unknown 0 0 coding-synon,untranslated-5 exact 1 7 1000GENOMES,EXOME_CHIP,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 593 chr1 1115460 1115461 rs116383664 0 + C C C/T genomic single unknown 0 0 missense exact 1 6 1000GENOMES,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 593 chr1 1115502 1115503 rs111751804 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1115603 1115604 rs115023808 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,C, 72.000000,4936.000000, 0.014377,0.985623, 593 chr1 1115738 1115739 rs60686192 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,NHLBI-ESP, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, 593 chr1 1115840 1115841 rs57269982 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,C, 148.000000,4860.000000, 0.029553,0.970447, 593 chr1 1115993 1115994 rs13376597 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,WUGSC_SSAHASNP, 2 A,G, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop,maf-5-all-pops 593 chr1 1116004 1116005 rs112517367 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 593 chr1 1116230 1116231 rs13374146 0 + T T C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,WUGSC_SSAHASNP, 2 C,T, 1005.000000,4003.000000, 0.200679,0.799321, maf-5-some-pop,maf-5-all-pops 593 chr1 1116310 1116311 rs12096125 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,SC_SNP,SSMP, 2 A,G, 1300.000000,3708.000000, 0.259585,0.740415, 593 chr1 1116552 1116553 rs72631898 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops 593 chr1 1116805 1116806 rs114012305 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 593 chr1 1117110 1117111 rs140479651 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1117200 1117200 rs200289943 0 + - - -/CTCAG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CTCAG, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1117397 1117398 rs12097586 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop 593 chr1 1117485 1117486 rs13376670 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3531.000000,1477.000000, 0.705072,0.294928, maf-5-some-pop,maf-5-all-pops 593 chr1 1117521 1117522 rs113744836 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1117528 1117529 rs111949778 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL, 2 A,C, 4938.000000,70.000000, 0.986022,0.013978, 593 chr1 1117708 1117709 rs112895009 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,NHLBI-ESP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1118211 1118212 rs10907171 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops 593 chr1 1118274 1118275 rs61733845 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop 593 chr1 1118490 1118491 rs112838421 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1118559 1118560 rs113531911 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1118577 1118578 rs111290899 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop 593 chr1 1118727 1118728 rs12097131 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop 593 chr1 1118897 1118898 rs77560046 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 593 chr1 1119233 1119234 rs568611774 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, 593 chr1 1119545 1119546 rs77051049 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1119795 1119796 rs74989427 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 593 chr1 1119802 1119803 rs78752770 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 593 chr1 1119857 1119858 rs1320565 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 593 chr1 1120306 1120307 rs7539911 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,SSMP,WI_SSAHASNP, 2 A,G, 1584.000000,3424.000000, 0.316294,0.683706, 593 chr1 1120369 1120370 rs74046640 0 + C C C/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop 593 chr1 1120430 1120431 rs1320571 0 + G G A/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop 593 chr1 1120487 1120488 rs74475385 0 + A A A/C genomic single unknown 0 0 missense exact 1 6 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,C, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 593 chr1 1120494 1120495 rs77026477 0 + T T C/T genomic single unknown 0 0 coding-synon,intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 593 chr1 1120502 1120503 rs116251234 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 593 chr1 1120535 1120536 rs77950429 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 593 chr1 1120620 1120621 rs74758268 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, 593 chr1 1121340 1121341 rs4297230 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3665.000000,1343.000000, 0.731829,0.268171, maf-5-some-pop 593 chr1 1121357 1121358 rs80057011 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 593 chr1 1121423 1121424 rs72894017 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 593 chr1 1121479 1121480 rs12063663 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,SC_SNP, 2 C,T, 656.000000,4352.000000, 0.130990,0.869010, 593 chr1 1121556 1121557 rs112904239 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 593 chr1 1121624 1121625 rs4081334 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1121656 1121657 rs11260548 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1988.000000,3020.000000, 0.396965,0.603035, 593 chr1 1121708 1121709 rs111966405 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 593 chr1 1121787 1121788 rs115652369 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 593 chr1 1121793 1121794 rs11260549 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop 593 chr1 1121835 1121835 rs57346441 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,TISHKOFF, 2 -,TG, 2998.000000,2010.000000, 0.598642,0.401358, 593 chr1 1121865 1121866 rs113802310 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1122023 1122024 rs4314833 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop 593 chr1 1122195 1122196 rs4634847 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3687.000000,1321.000000, 0.736222,0.263778, maf-5-some-pop 593 chr1 1122282 1122283 rs12064046 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 593 chr1 1122318 1122319 rs7415847 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3737.000000,1271.000000, 0.746206,0.253794, 593 chr1 1122387 1122388 rs11260550 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SC_SNP,TISHKOFF, 2 A,G, 1316.000000,3692.000000, 0.262780,0.737220, 593 chr1 1122393 1122393 rs533697430 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,T, 3699.000000,1309.000000, 0.738618,0.261382, 593 chr1 1122395 1122396 rs61768484 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 C,T, 3691.000000,1317.000000, 0.737021,0.262979, 593 chr1 1122467 1122468 rs7545694 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1939.000000,3069.000000, 0.387181,0.612819, 593 chr1 1122515 1122516 rs11260551 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1271.000000,3737.000000, 0.253794,0.746206, maf-5-some-pop,maf-5-all-pops 593 chr1 1122538 1122539 rs12063897 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,maf-5-all-pops 593 chr1 1122915 1122916 rs28460227 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, 593 chr1 1122936 1122937 rs28648687 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop,maf-5-all-pops 593 chr1 1123105 1123106 rs12401472 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1282.000000,3726.000000, 0.255990,0.744010, 593 chr1 1123433 1123434 rs12066716 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1199.000000,3809.000000, 0.239417,0.760583, maf-5-some-pop,maf-5-all-pops 593 chr1 1124004 1124005 rs145538412 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 593 chr1 1124099 1124100 rs147725041 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1124256 1124257 rs10907172 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3726.000000,1282.000000, 0.744010,0.255990, maf-5-some-pop 593 chr1 1124342 1124343 rs7544660 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 593 chr1 1124398 1124399 rs10907173 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3681.000000,1327.000000, 0.735024,0.264976, maf-5-some-pop 593 chr1 1124537 1124538 rs11577350 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 593 chr1 1124662 1124663 rs6684820 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2774.000000,2234.000000, 0.553914,0.446086, maf-5-some-pop,maf-5-all-pops 593 chr1 1124749 1124750 rs6702156 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 593 chr1 1124791 1124792 rs143677262 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4904.000000,104.000000, 0.979233,0.020767, 593 chr1 1124818 1124819 rs6694487 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 593 chr1 1124890 1124891 rs61768485 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1282.000000,3726.000000, 0.255990,0.744010, maf-5-some-pop 593 chr1 1124973 1124974 rs78717314 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 593 chr1 1125109 1125110 rs12124436 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,maf-5-all-pops 593 chr1 1125125 1125126 rs78281127 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, 593 chr1 1125219 1125220 rs12065129 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 593 chr1 1125220 1125221 rs138045565 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 593 chr1 1125347 1125348 rs12029885 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1327.000000,3681.000000, 0.264976,0.735024, 593 chr1 1125440 1125441 rs189973229 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1125552 1125553 rs10907174 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3170.000000,1838.000000, 0.632987,0.367013, maf-5-some-pop,maf-5-all-pops 593 chr1 1125627 1125627 rs574618634 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4159.000000,849.000000, 0.830471,0.169529, 593 chr1 1125773 1125774 rs72894023 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 593 chr1 1125811 1125811 rs541647229 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3745.000000,1263.000000, 0.747804,0.252196, 593 chr1 1126086 1126087 rs9727406 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 593 chr1 1126235 1126236 rs4578157 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1329.000000,3679.000000, 0.265375,0.734625, 593 chr1 1126254 1126255 rs4449971 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1283.000000,3725.000000, 0.256190,0.743810, 593 chr1 1126805 1126806 rs112531984 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1126948 1126949 rs12120877 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, 593 chr1 1127009 1127010 rs9730380 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 649.000000,4359.000000, 0.129593,0.870407, maf-5-some-pop,maf-5-all-pops 593 chr1 1127100 1127101 rs9659458 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop,maf-5-all-pops 593 chr1 1127136 1127137 rs12062271 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4415.000000,593.000000, 0.881589,0.118411, maf-5-some-pop,maf-5-all-pops 593 chr1 1127321 1127322 rs11260552 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, 593 chr1 1127329 1127330 rs12061357 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4477.000000,531.000000, 0.893970,0.106030, 593 chr1 1127379 1127380 rs11260553 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 593 chr1 1127506 1127507 rs12021582 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1284.000000,3724.000000, 0.256390,0.743610, maf-5-some-pop 593 chr1 1127522 1127523 rs12024296 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3724.000000,1284.000000, 0.743610,0.256390, maf-5-some-pop 593 chr1 1127608 1127608 rs138180324 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 4475.000000,533.000000, 0.893570,0.106430, 593 chr1 1127680 1127681 rs61768486 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1284.000000,3724.000000, 0.256390,0.743610, maf-5-some-pop,maf-5-all-pops 593 chr1 1127859 1127860 rs148527527 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 4120.000000,888.000000, 0.822684,0.177316, 593 chr1 1127947 1127948 rs61768488 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,C, 3699.000000,1309.000000, 0.738618,0.261382, 593 chr1 1127976 1127977 rs61768491 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP,TISHKOFF, 2 A,G, 3142.000000,1866.000000, 0.627396,0.372604, 593 chr1 1128330 1128331 rs61766176 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3725.000000,1283.000000, 0.743810,0.256190, maf-5-some-pop 593 chr1 1128404 1128409 rs201316879 0 + TAATA TAATA -/TAATA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TAATA, 70.000000,4938.000000, 0.013978,0.986022, 593 chr1 1128428 1128429 rs61766177 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 593 chr1 1128520 1128521 rs61766178 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3132.000000,1876.000000, 0.625399,0.374601, 593 chr1 1129004 1129005 rs112761379 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 4946.000000,62.000000, 0.987620,0.012380, 593 chr1 1129031 1129032 rs28657564 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4127.000000,881.000000, 0.824081,0.175919, 593 chr1 1129121 1129122 rs9659213 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 532.000000,4476.000000, 0.106230,0.893770, 593 chr1 1129362 1129362 rs60117456 0 + - - -/C genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 4246.000000,762.000000, 0.847843,0.152157, 593 chr1 1129671 1129672 rs11260554 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop 593 chr1 1129706 1129707 rs11260555 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop,maf-5-all-pops 593 chr1 1129788 1129789 rs12060374 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 593 chr1 1129919 1129920 rs12060422 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 593 chr1 1130092 1130093 rs12026524 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop,maf-5-all-pops 593 chr1 1130113 1130114 rs80172355 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 593 chr1 1130199 1130200 rs60952966 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 688.000000,4320.000000, 0.137380,0.862620, maf-5-some-pop 593 chr1 1130205 1130206 rs11260556 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1872.000000,3136.000000, 0.373802,0.626198, maf-5-some-pop,maf-5-all-pops 593 chr1 1130310 1130311 rs59574701 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 694.000000,4314.000000, 0.138578,0.861422, maf-5-some-pop,maf-5-all-pops 593 chr1 1130361 1130365 rs370017189 0 + CTCT CTCT -/CTCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CTCT, 62.000000,4946.000000, 0.012380,0.987620, 593 chr1 1130479 1130480 rs9659772 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1374.000000,3634.000000, 0.274361,0.725639, maf-5-some-pop,maf-5-all-pops 593 chr1 1130589 1130590 rs111659490 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1130659 1130660 rs9727211 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4212.000000,796.000000, 0.841054,0.158946, maf-5-some-pop 593 chr1 1130842 1130843 rs9727857 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2254.000000,2754.000000, 0.450080,0.549920, maf-5-some-pop,maf-5-all-pops 593 chr1 1130854 1130855 rs10907176 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 523.000000,4485.000000, 0.104433,0.895567, maf-5-some-pop,maf-5-all-pops 593 chr1 1131051 1131052 rs12066103 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4484.000000,524.000000, 0.895367,0.104633, maf-5-some-pop,maf-5-all-pops 593 chr1 1131146 1131147 rs113488592 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 593 chr1 1131235 1131236 rs12062042 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,maf-5-all-pops 593 chr1 1131311 1131312 rs12067297 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 310.000000,48.000000, 0.865922,0.134078, maf-5-some-pop,maf-5-all-pops 593 chr1 1131418 1131419 rs9660873 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3137.000000,1871.000000, 0.626398,0.373602, 593 chr1 1131440 1131441 rs12403745 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3757.000000,1251.000000, 0.750200,0.249800, maf-5-some-pop,maf-5-all-pops 593 chr1 1131502 1131503 rs111614847 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1131580 1131581 rs9329409 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops 593 chr1 1133253 1133254 rs12026794 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 1279.000000,3729.000000, 0.255391,0.744609, maf-5-some-pop,maf-5-all-pops 593 chr1 1133272 1133273 rs12031928 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SC_SNP,SSMP, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops 593 chr1 1133311 1133317 rs142233803 0 + ACAAAC ACAAAC -/ACAAAC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,ACAAAC, 168.000000,4840.000000, 0.033546,0.966454, 593 chr1 1133315 1133317 rs142789284 0 + AC AC -/AC genomic deletion unknown 0 0 near-gene-3 range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,AC, 504.000000,4504.000000, 0.100639,0.899361, 593 chr1 1133501 1133502 rs113723849 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop 593 chr1 1133571 1133572 rs146994145 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1133656 1133657 rs115710668 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 593 chr1 1133786 1133787 rs12405246 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops 593 chr1 1133929 1133930 rs58004717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 593 chr1 1134052 1134053 rs60075996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop 593 chr1 1134252 1134253 rs200115846 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 87.000000,4921.000000, 0.017372,0.982628, 593 chr1 1134632 1134633 rs11260558 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,maf-5-all-pops 593 chr1 1134706 1134707 rs9727747 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1314.000000,3694.000000, 0.262380,0.737620, maf-5-some-pop 593 chr1 1135056 1135057 rs76788904 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, 593 chr1 1135107 1135108 rs58737594 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop,maf-5-all-pops 593 chr1 1135241 1135242 rs9729550 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SNP500CANCER,SSMP,TISHKOFF, 2 A,C, 2244.000000,2764.000000, 0.448083,0.551917, maf-5-some-pop,maf-5-all-pops 593 chr1 1135298 1135299 rs115135680 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, 593 chr1 1135650 1135651 rs72894031 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop,maf-5-all-pops 593 chr1 1135825 1135826 rs372949868 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,T, 4940.000000,68.000000, 0.986422,0.013578, 593 chr1 1136274 1136275 rs112347635 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,LUNTER,SSMP,TISHKOFF, 2 -,T, 285.000000,4723.000000, 0.056909,0.943091, 593 chr1 1136667 1136668 rs182292802 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 261.000000,4747.000000, 0.052117,0.947883, 593 chr1 1136752 1136753 rs186608774 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 1471.000000,3537.000000, 0.293730,0.706270, 593 chr1 1137190 1137191 rs192669137 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 453.000000,4555.000000, 0.090455,0.909545, 593 chr1 1137192 1137193 rs548928504 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4606.000000,402.000000, 0.919728,0.080272, 593 chr1 1137705 1137706 rs376031205 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 3788.000000,1220.000000, 0.756390,0.243610, 593 chr1 1138004 1138005 rs536805412 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 248.000000,4760.000000, 0.049521,0.950479, 593 chr1 1138042 1138043 rs536274149 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 384.000000,4624.000000, 0.076677,0.923323, 593 chr1 1138284 1138285 rs74508499 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop,maf-5-all-pops 593 chr1 1138734 1138735 rs11466698 0 - C C C/G genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1138843 1138844 rs11466697 0 - G G C/T genomic single unknown 0.021503 0.101435 near-gene-3 exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,T, 91.000000,1.000000, 0.989130,0.010870, 593 chr1 1140152 1140153 rs76030777 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 593 chr1 1140289 1140290 rs57260149 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 611.000000,4397.000000, 0.122005,0.877995, maf-5-some-pop 593 chr1 1140434 1140435 rs1815606 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,IIPGA-WEISS-MARTINEZ,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1442.000000,3566.000000, 0.287939,0.712061, maf-5-some-pop 593 chr1 1140503 1140504 rs4081335 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 531.000000,4477.000000, 0.106030,0.893970, maf-5-some-pop 593 chr1 1140798 1140799 rs11466689 0 - C C A/G genomic single by-frequency 0.065857 0.16909 coding-synon exact 1 1 IIPGA-WEISS-MARTINEZ, 2 A,G, 3.000000,85.000000, 0.034091,0.965909, 593 chr1 1140869 1140870 rs11466687 0 - C C A/G genomic single unknown 0 0 missense exact 1 4 EVA-GONL,IIPGA-WEISS-MARTINEZ,ILLUMINA,KRIBB_YJKIM, 2 A,G, 13.000000,1141.000000, 0.011265,0.988735, 593 chr1 1140903 1140904 rs11466686 0 - C C C/G genomic single by-frequency 0.086777 0.189363 intron exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,G, 4.000000,84.000000, 0.045454,0.954545, 593 chr1 1140908 1140909 rs11466685 0 - C C C/G genomic single by-frequency 0.086777 0.189363 intron exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,G, 4.000000,84.000000, 0.045454,0.954545, 593 chr1 1140938 1140939 rs11466684 0 - C C A/G genomic single unknown 0.022469 0.103584 intron exact 1 1 IIPGA-WEISS-MARTINEZ, 2 A,G, 1.000000,87.000000, 0.011364,0.988636, 593 chr1 1141823 1141824 rs11466676 0 - G G C/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,BUSHMAN,CORNELL,EXOME_CHIP,IIPGA-WEISS-MARTINEZ,NHLBI-ESP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1142094 1142095 rs11466675 0 - G G C/T genomic single unknown 0.02105 0.100409 near-gene-5,untranslated-5 exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,T, 93.000000,1.000000, 0.989362,0.010638, 593 chr1 1142149 1142150 rs3753344 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HGSV,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 593 chr1 1142253 1142254 rs11466674 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,IIPGA-WEISS-MARTINEZ,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1142403 1142403 rs397843839 0 - - - -/G genomic insertion by-frequency 0 0 near-gene-5 between 1 1 IIPGA-WEISS-MARTINEZ, 2 -,G, 86.000000,6.000000, 0.934783,0.065217, maf-5-some-pop 593 chr1 1142691 1142694 rs139831526 0 + GAG GAG -/GAG genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GAG, 64.000000,4944.000000, 0.012780,0.987220, 593 chr1 1143103 1143104 rs3753346 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop 593 chr1 1143179 1143180 rs3834015 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BGI,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 482.000000,4526.000000, 0.096246,0.903754, 593 chr1 1143183 1143184 rs397825100 0 + G G -/G genomic deletion by-cluster,by-frequency 0 0 near-gene-5 exact 1 2 IIPGA-WEISS-MARTINEZ,YUSUKE, 2 -,G, 4.000000,86.000000, 0.044444,0.955556, maf-5-some-pop 593 chr1 1143225 1143226 rs11466666 0 - G G C/T genomic single unknown 0.023526 0.105875 near-gene-5 exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,T, 83.000000,1.000000, 0.988095,0.011905, 593 chr1 1143296 1143297 rs180932521 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1143450 1143451 rs3753347 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,IIPGA-WEISS-MARTINEZ,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4270.000000,738.000000, 0.852636,0.147364, maf-5-some-pop,maf-5-all-pops 593 chr1 1143656 1143657 rs3753348 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,IIPGA-WEISS-MARTINEZ,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 593 chr1 1143921 1143922 rs111812582 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 593 chr1 1144054 1144055 rs138198189 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1144057 1144058 rs3753349 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop 593 chr1 1144121 1144122 rs57356573 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 186.000000,4822.000000, 0.037141,0.962859, 593 chr1 1144195 1144196 rs3753350 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop,maf-5-all-pops 593 chr1 1144499 1144501 rs113462398 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,GA, 375.000000,4633.000000, 0.074880,0.925120, 593 chr1 1144615 1144616 rs80042932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 233.000000,4775.000000, 0.046526,0.953474, 593 chr1 1144652 1144653 rs78021605 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 593 chr1 1144695 1144696 rs111842318 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 C,T, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 593 chr1 1144831 1144832 rs111559683 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop,maf-5-all-pops 593 chr1 1145067 1145068 rs35615256 0 - C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EGP_SNPS,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1145466 1145467 rs34279802 0 - C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1145481 1145483 rs367679479 0 + AA AA -/AA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,AA, 418.000000,4590.000000, 0.083467,0.916534, 593 chr1 1145765 1145766 rs34067070 0 - C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1146398 1146399 rs2298208 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EGP_SNPS,GMI,ILLUMINA,SSMP,YUSUKE, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 593 chr1 1146784 1146785 rs2298209 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,BGI,EGP_SNPS,EVA-GONL,ILLUMINA,SSMP,YUSUKE, 2 C,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop 593 chr1 1146852 1146853 rs2298210 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EGP_SNPS,EVA-GONL,SSMP,TISHKOFF,YUSUKE, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 593 chr1 1147242 1147243 rs2298211 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,C, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 593 chr1 1147296 1147297 rs2298212 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop 593 chr1 1147769 1147770 rs9661697 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EGP_SNPS,EVA-GONL,ILLUMINA,SSMP,WI_SSAHASNP, 2 A,G, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop 593 chr1 1149315 1149316 rs35737009 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1149745 1149746 rs369542957 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 593 chr1 1150180 1150181 rs35659545 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1150437 1150438 rs35791369 0 - A A A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EGP_SNPS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1151541 1151542 rs78113662 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 593 chr1 1151557 1151558 rs150063369 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,WARNICH_LAB, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1151678 1151679 rs77271083 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop 593 chr1 1151916 1151917 rs78479912 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 593 chr1 1151972 1151973 rs75972122 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 982.000000,4026.000000, 0.196086,0.803914, maf-5-some-pop,maf-5-all-pops 593 chr1 1152079 1152080 rs76798288 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 237.000000,4771.000000, 0.047324,0.952676, maf-5-some-pop 593 chr1 1152087 1152089 rs201944277 0 + CT CT -/CT genomic deletion unknown 0 0 near-gene-3 range 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 -,CT, 209.000000,4799.000000, 0.041733,0.958267, 593 chr1 1152271 1152272 rs557465512 0 + T T -/T genomic deletion unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 -,T, 77.000000,4931.000000, 0.015375,0.984625, 593 chr1 1152547 1152548 rs11260561 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,SC_SNP, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 593 chr1 1152630 1152631 rs11721 0 - C C A/C/G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 SingleClassQuadAllelic 14 1000GENOMES,BGI,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 794.000000,4214.000000,4214.000000,794.000000, 0.079273,0.420727,0.420727,0.079273, maf-5-some-pop 593 chr1 1152730 1152731 rs76053780 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, 593 chr1 1152763 1152769 rs71768002 0 + GCCGCG GCCGCG -/GCCGCG genomic deletion unknown 0 0 cds-indel,untranslated-3 range 1 2 1000GENOMES,LUNTER, 2 -,GCCGCG, 201.000000,4807.000000, 0.040136,0.959864, 593 chr1 1152842 1152843 rs576781719 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 593 chr1 1153112 1153113 rs12036216 0 + G G A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 12 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 A,G, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 593 chr1 1153454 1153455 rs77156226 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop 593 chr1 1154120 1154121 rs112680577 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1154538 1154539 rs9659553 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop,maf-5-all-pops 593 chr1 1154583 1154583 rs573538759 0 + - - -/C genomic insertion unknown 0 0 intron,untranslated-3 between 1 1 1000GENOMES, 2 -,C, 4569.000000,439.000000, 0.912340,0.087660, 593 chr1 1154956 1154957 rs111614711 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 593 chr1 1155014 1155015 rs116630076 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1155081 1155082 rs111514896 0 + C C C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4529.000000,479.000000, 0.904353,0.095647, maf-5-some-pop,maf-5-all-pops 593 chr1 1155237 1155238 rs12134035 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1327.000000,3681.000000, 0.264976,0.735024, maf-5-some-pop,maf-5-all-pops 593 chr1 1155260 1155261 rs79577694 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 593 chr1 1155616 1155617 rs79598135 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1155684 1155685 rs57159546 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop,maf-5-all-pops 593 chr1 1155756 1155757 rs4970422 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3662.000000,1346.000000, 0.731230,0.268770, maf-5-some-pop 593 chr1 1155785 1155786 rs12090040 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 593 chr1 1155803 1155804 rs11809575 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop,maf-5-all-pops 593 chr1 1155855 1155855 rs201775526 0 + - - -/C genomic insertion unknown 0 0 intron,untranslated-3 between 1 1 1000GENOMES, 2 -,C, 4926.000000,82.000000, 0.983626,0.016374, 593 chr1 1156428 1156429 rs944369 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop,maf-5-all-pops 593 chr1 1156474 1156474 rs150198396 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1156654 1156655 rs75998592 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 579.000000,4429.000000, 0.115615,0.884385, maf-5-some-pop,maf-5-all-pops 593 chr1 1156734 1156735 rs79361728 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 589.000000,4419.000000, 0.117612,0.882388, maf-5-some-pop,maf-5-all-pops 593 chr1 1157339 1157340 rs56013947 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 593 chr1 1157371 1157372 rs55683245 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 622.000000,4386.000000, 0.124201,0.875799, maf-5-some-pop,maf-5-all-pops 593 chr1 1157546 1157547 rs79118541 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1157563 1157564 rs75124586 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1157624 1157625 rs74374908 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 593 chr1 1157630 1157631 rs79875872 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1157683 1157684 rs79281810 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1157704 1157705 rs79339398 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 593 chr1 1157833 1157834 rs79561057 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop,maf-5-all-pops 593 chr1 1157861 1157862 rs78596995 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1157959 1157960 rs74350546 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop,maf-5-all-pops 593 chr1 1157973 1157974 rs76056412 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop,maf-5-all-pops 593 chr1 1157990 1157991 rs74930764 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1158019 1158020 rs112678550 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4382.000000,626.000000, 0.875000,0.125000, maf-5-some-pop,maf-5-all-pops 593 chr1 1158069 1158070 rs114330234 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 593 chr1 1158356 1158357 rs76888271 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4385.000000,623.000000, 0.875599,0.124401, 593 chr1 1158441 1158443 rs150930263 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CA, 144.000000,4864.000000, 0.028754,0.971246, 593 chr1 1158534 1158534 rs59317408 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,AC, 4386.000000,622.000000, 0.875799,0.124201, 593 chr1 1158562 1158564 rs57524763 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,AC, 607.000000,4401.000000, 0.121206,0.878794, 593 chr1 1158630 1158631 rs6603781 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 593 chr1 1158947 1158948 rs75967767 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop,maf-5-all-pops 593 chr1 1158974 1158975 rs74808088 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop,maf-5-all-pops 593 chr1 1159019 1159020 rs113206287 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4380.000000,628.000000, 0.874601,0.125399, maf-5-some-pop,maf-5-all-pops 593 chr1 1159023 1159024 rs77472198 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4366.000000,642.000000, 0.871805,0.128195, maf-5-some-pop,maf-5-all-pops 593 chr1 1159061 1159062 rs79028173 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop,maf-5-all-pops 593 chr1 1159106 1159107 rs114919826 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1159174 1159175 rs530399201 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 622.000000,4386.000000, 0.124201,0.875799, 593 chr1 1159178 1159179 rs550680351 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4386.000000,622.000000, 0.875799,0.124201, 593 chr1 1159484 1159485 rs75700266 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop,maf-5-all-pops 593 chr1 1159516 1159517 rs6702268 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025958, maf-5-some-pop 593 chr1 1159539 1159540 rs6667998 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 593 chr1 1159661 1159666 rs112011543 0 + TTTTA TTTTA -/TTTTA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP, 2 -,TTTTA, 436.000000,4572.000000, 0.087061,0.912939, 593 chr1 1159728 1159729 rs112733189 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 623.000000,4385.000000, 0.124401,0.875599, 593 chr1 1160162 1160163 rs111452679 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,maf-5-all-pops 593 chr1 1160225 1160226 rs75165450 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1160244 1160245 rs57994571 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 A,T, 4929.000000,79.000000, 0.984225,0.015775, 593 chr1 1160664 1160665 rs6671424 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 653.000000,4355.000000, 0.130391,0.869609, maf-5-some-pop 593 chr1 1160799 1160800 rs112760581 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 593 chr1 1161128 1161129 rs370635626 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, 593 chr1 1161233 1161234 rs74223867 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 593 chr1 1161361 1161362 rs111698464 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop,maf-5-all-pops 593 chr1 1161382 1161383 rs74046651 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,maf-5-all-pops 593 chr1 1161392 1161393 rs12087719 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,maf-5-all-pops 593 chr1 1161640 1161641 rs78913203 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1161716 1161717 rs115953853 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop,maf-5-all-pops 593 chr1 1161731 1161732 rs550794034 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, 593 chr1 1161742 1161743 rs138773558 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 67.000000,4941.000000, 0.013379,0.986621, 593 chr1 1161754 1161755 rs142693327 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 616.000000,4392.000000, 0.123003,0.876997, 593 chr1 1161755 1161756 rs147359526 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4407.000000,601.000000, 0.879992,0.120008, 593 chr1 1161779 1161780 rs113791678 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1161865 1161866 rs78107697 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4410.000000,598.000000, 0.880591,0.119409, maf-5-some-pop,maf-5-all-pops 593 chr1 1161930 1161931 rs76084981 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 593 chr1 1161966 1161967 rs75869787 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop,maf-5-all-pops 593 chr1 1162000 1162000 rs111614456 0 + - - -/C genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,C, 4446.000000,562.000000, 0.887780,0.112220, 593 chr1 1162113 1162114 rs116785759 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 593 chr1 1162171 1162172 rs114758303 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 593 chr1 1162540 1162541 rs80322353 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 596.000000,4412.000000, 0.119010,0.880990, maf-5-some-pop,maf-5-all-pops 593 chr1 1162681 1162682 rs118047549 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 593 chr1 1162746 1162747 rs536569861 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 593 chr1 1163005 1163006 rs35194949 0 - C C G/T genomic single by-cluster,by-frequency,by-hapmap 0.032578 0.1234 intron exact 1 3 ABI,ILLUMINA,KRIBB_YJKIM, 2 G,T, 950.000000,16.000000, 0.983437,0.016563, 593 chr1 1163064 1163065 rs58937376 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1695.000000,3313.000000, 0.338458,0.661542, maf-5-some-pop 593 chr1 1163171 1163172 rs112819941 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1163265 1163266 rs112328659 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop 593 chr1 1163354 1163355 rs55701216 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 593 chr1 1163448 1163449 rs56070543 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop,maf-5-all-pops 593 chr1 1163473 1163474 rs56378990 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 4415.000000,593.000000, 0.881589,0.118411, maf-5-some-pop,maf-5-all-pops 593 chr1 1163766 1163767 rs182022102 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 593 chr1 1163772 1163773 rs78757251 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 593 chr1 1163803 1163804 rs7515488 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4072.000000,936.000000, 0.813099,0.186901, maf-5-some-pop,maf-5-all-pops 593 chr1 1163811 1163811 rs147694774 0 + - - -/GACA genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BL,EVA-GONL,LUNTER, 2 -,GACA, 3865.000000,1143.000000, 0.771765,0.228235, 593 chr1 1164030 1164031 rs61744664 0 + A A A/G genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop 593 chr1 1164071 1164072 rs61745645 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop 593 chr1 1164089 1164090 rs61745652 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 593 chr1 1164178 1164179 rs76230175 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 593 chr1 1164250 1164250 rs141133166 0 + - - -/CA genomic insertion unknown 0 0 ncRNA,untranslated-5 between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CA, 4802.000000,206.000000, 0.958866,0.041134, 593 chr1 1164464 1164465 rs115503846 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 593 chr1 1164509 1164510 rs114433605 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 593 chr1 1164528 1164529 rs139694133 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 593 chr1 1164537 1164538 rs77668548 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 593 chr1 1164539 1164540 rs80229541 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 593 chr1 1164563 1164564 rs116359778 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 593 chr1 1164623 1164624 rs111987858 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 593 chr1 1164627 1164628 rs79893391 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 593 chr1 1164686 1164687 rs75188282 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 622.000000,4386.000000, 0.124201,0.875799, maf-5-some-pop,maf-5-all-pops 593 chr1 1164749 1164749 rs113272753 0 + - - -/C genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,TISHKOFF, 2 -,C, 3875.000000,1133.000000, 0.773762,0.226238, 593 chr1 1164758 1164758 rs202035270 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,G, 4500.000000,508.000000, 0.898562,0.101438, 593 chr1 1164929 1164930 rs111760935 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 593 chr1 1165280 1165282 rs148801934 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CA, 623.000000,4385.000000, 0.124401,0.875599, 593 chr1 1165320 1165322 rs143841174 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AT, 631.000000,4377.000000, 0.125998,0.874002, 593 chr1 1165360 1165361 rs76024681 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop,maf-5-all-pops 593 chr1 1165470 1165471 rs77819818 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 593 chr1 1165521 1165522 rs12089404 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 593 chr1 1165538 1165539 rs11260563 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2699.000000,2309.000000, 0.538938,0.461062, maf-5-some-pop 593 chr1 1165703 1165704 rs368245192 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,T, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1165724 1165725 rs77696650 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1165820 1165821 rs79493008 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1165842 1165842 rs553378637 0 + - - -/TTT genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,TTT, 4727.000000,281.000000, 0.943890,0.056110, 593 chr1 1165879 1165880 rs371474367 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 593 chr1 1166074 1166075 rs55893507 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 623.000000,4385.000000, 0.124401,0.875599, 593 chr1 1166085 1166086 rs11260564 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,CSHL-HAPMAP,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, 593 chr1 1166176 1166177 rs55717744 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 593 chr1 1166204 1166205 rs56316126 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1166388 1166389 rs78379068 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 593 chr1 1166886 1166887 rs60252802 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 886.000000,4122.000000, 0.176917,0.823083, maf-5-some-pop,maf-5-all-pops 593 chr1 1167090 1167099 rs112603604 0 + CCCCGGGAA CCCCGGGAA -/CCCCGGGAA genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CCCCGGGAA, 810.000000,4198.000000, 0.161741,0.838259, 593 chr1 1167795 1167796 rs190796582 0 + C C C/T genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4199.000000,809.000000, 0.838458,0.161542, 593 chr1 1168179 1168180 rs12085009 0 + G G C/G genomic single unknown 0 0 near-gene-5,missense exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,EXOME_CHIP,NHLBI-ESP,SC_SNP, 2 C,G, 534.000000,4474.000000, 0.106629,0.893371, 593 chr1 1168842 1168843 rs148754856 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 593 chr1 1169093 1169094 rs45574035 0 + G G C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 593 chr1 1169484 1169485 rs45578847 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop 593 chr1 1169636 1169637 rs79425787 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop,maf-5-all-pops 593 chr1 1169727 1169728 rs45591840 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4848.000000,160.000000, 0.968051,0.031949, 593 chr1 1169972 1169973 rs56852924 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop 593 chr1 1170004 1170005 rs116449540 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 593 chr1 1170147 1170148 rs61353980 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 593 chr1 1170478 1170479 rs78277880 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 593 chr1 1170586 1170587 rs78424188 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 593 chr1 1170681 1170682 rs114640435 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 593 chr1 1170728 1170729 rs79774771 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 593 chr1 1170981 1170982 rs77994686 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 593 chr1 1171021 1171022 rs12089192 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop,maf-5-all-pops 593 chr1 1171099 1171100 rs12096608 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 823.000000,4185.000000, 0.164337,0.835663, maf-5-some-pop,maf-5-all-pops 593 chr1 1171152 1171153 rs12093363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop 593 chr1 1171248 1171249 rs7528416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 593 chr1 1171376 1171377 rs7536250 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop,maf-5-all-pops 593 chr1 1171416 1171417 rs6603782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1759.000000,3249.000000, 0.351238,0.648762, maf-5-some-pop 593 chr1 1171451 1171452 rs186391484 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 593 chr1 1171454 1171455 rs189721114 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 593 chr1 1171577 1171578 rs78241900 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 593 chr1 1171682 1171683 rs7536568 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop,maf-5-all-pops 593 chr1 1171835 1171836 rs186263536 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1171966 1171967 rs144656072 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1172084 1172085 rs114702966 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 593 chr1 1172121 1172122 rs139799709 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 593 chr1 1172211 1172212 rs115281850 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 593 chr1 1172389 1172390 rs79957757 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 593 chr1 1172906 1172907 rs715643 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 593 chr1 1173247 1173248 rs113509529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 593 chr1 1173610 1173611 rs6697886 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 1105.000000,3903.000000, 0.220647,0.779353, maf-5-some-pop,maf-5-all-pops 593 chr1 1174092 1174093 rs115614180 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1174262 1174263 rs80242057 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 593 chr1 1174281 1174282 rs4970364 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3296.000000,1712.000000, 0.658147,0.341853, maf-5-some-pop 593 chr1 1174953 1174954 rs6687563 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop,maf-5-all-pops 593 chr1 1175304 1175305 rs115765087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop,maf-5-all-pops 593 chr1 1175746 1175747 rs113143549 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4337.000000,671.000000, 0.866014,0.133986, maf-5-some-pop,maf-5-all-pops 593 chr1 1175769 1175770 rs114105718 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 428.000000,4580.000000, 0.085463,0.914537, maf-5-some-pop,maf-5-all-pops 593 chr1 1175960 1175960 rs565331586 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,C, 4381.000000,627.000000, 0.874800,0.125200, 593 chr1 1176006 1176007 rs569491641 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, 593 chr1 1176226 1176227 rs115144100 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,maf-5-all-pops 593 chr1 1176432 1176433 rs12096091 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP, 2 A,G, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop,maf-5-all-pops 593 chr1 1176596 1176597 rs6675798 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 912.000000,4096.000000, 0.182109,0.817891, maf-5-some-pop,maf-5-all-pops 593 chr1 1177018 1177019 rs77550145 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,maf-5-all-pops 593 chr1 1177210 1177211 rs79361800 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,maf-5-all-pops 593 chr1 1177473 1177474 rs2297863 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop,maf-5-all-pops 593 chr1 1177629 1177630 rs2297864 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop 593 chr1 1177772 1177773 rs79861994 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 593 chr1 1177820 1177821 rs58080375 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 593 chr1 1177892 1177893 rs12410680 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,NHLBI-ESP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1177918 1177919 rs3835300 0 + T T -/T genomic deletion unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,YUSUKE, 2 -,T, 374.000000,4634.000000, 0.074680,0.925319, 593 chr1 1178243 1178244 rs74511182 0 + G G C/G genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,JMKIDD_LAB, 2 C,G, 136.000000,4872.000000, 0.027157,0.972844, 593 chr1 1178244 1178245 rs11260566 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 4113.000000,895.000000, 0.821286,0.178714, maf-5-some-pop,maf-5-all-pops 593 chr1 1178265 1178266 rs77651834 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 593 chr1 1178452 1178453 rs114921901 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 593 chr1 1178481 1178482 rs78555129 0 + A A A/G genomic single unknown 0 0 missense exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP, 2 A,G, 4082.000000,926.000000, 0.815096,0.184904, maf-5-some-pop 593 chr1 1178924 1178925 rs12093154 0 + G G A/G genomic single unknown 0 0 missense exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 A,G, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop,maf-5-all-pops 593 chr1 1179029 1179030 rs111673713 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop,maf-5-all-pops 593 chr1 1179201 1179202 rs112407210 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1179308 1179309 rs113164957 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop,maf-5-all-pops 593 chr1 1179384 1179385 rs199525665 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, 594 chr1 1179982 1179983 rs76342560 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 594 chr1 1180389 1180390 rs115765289 0 + G G C/G genomic single by-frequency,by-1000genomes 0.309039 0.242929 intron exact 1 2 1000GENOMES,GMI, 2 C,G, 49.000000,71.000000, 0.408333,0.591667, maf-5-some-pop,maf-5-all-pops 594 chr1 1180778 1180779 rs55812745 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop 594 chr1 1181371 1181372 rs72631899 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop,maf-5-all-pops 594 chr1 1181403 1181404 rs79597171 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1181595 1181596 rs140160339 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 594 chr1 1181750 1181751 rs6603783 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 594 chr1 1181786 1181787 rs111517457 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1182030 1182031 rs7539412 0 + C C C/T genomic single unknown 0 0 missense exact 1 3 1000GENOMES,NHLBI-ESP,WI_SSAHASNP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 594 chr1 1182349 1182350 rs7541926 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 594 chr1 1182408 1182409 rs182300651 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 594 chr1 1182904 1182905 rs75668831 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 594 chr1 1182986 1182987 rs192108457 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, 594 chr1 1183396 1183397 rs78446752 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 594 chr1 1183442 1183443 rs528443018 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 651.000000,4357.000000, 0.129992,0.870008, 594 chr1 1183448 1183449 rs571351753 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4357.000000,651.000000, 0.870008,0.129992, 594 chr1 1183454 1183455 rs372484838 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4358.000000,650.000000, 0.870208,0.129792, 594 chr1 1183520 1183521 rs116698703 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 594 chr1 1183528 1183529 rs114232218 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 594 chr1 1183585 1183586 rs577754832 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, 594 chr1 1183597 1183598 rs138672134 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4350.000000,658.000000, 0.868610,0.131390, 594 chr1 1183688 1183689 rs550837006 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 361.000000,4647.000000, 0.072085,0.927915, 594 chr1 1183757 1183758 rs139170693 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 594 chr1 1183857 1183858 rs113908945 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 2 G,T, 4062.000000,946.000000, 0.811102,0.188898, maf-5-some-pop,maf-5-all-pops 594 chr1 1183864 1183865 rs111798607 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 2 C,T, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops 594 chr1 1183976 1183977 rs377075401 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 4045.000000,963.000000, 0.807708,0.192292, 594 chr1 1184045 1184046 rs547312278 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 594 chr1 1184065 1184066 rs373952942 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 4257.000000,751.000000, 0.850040,0.149960, 594 chr1 1184088 1184089 rs28589502 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 3952.000000,1056.000000, 0.789137,0.210863, 594 chr1 1184177 1184178 rs12758310 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSAHASNP, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 594 chr1 1184243 1184244 rs117412088 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 594 chr1 1184244 1184245 rs561118511 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1184284 1184285 rs111811102 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 C,G, 1039.000000,3969.000000, 0.207468,0.792532, 594 chr1 1184482 1184483 rs368553032 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, 594 chr1 1185007 1185008 rs12123413 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 4107.000000,901.000000, 0.820088,0.179912, 594 chr1 1185259 1185260 rs4567233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3813.000000,1195.000000, 0.761382,0.238618, 594 chr1 1185506 1185507 rs138025977 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1185523 1185524 rs115270700 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop,maf-5-all-pops 594 chr1 1185557 1185558 rs142609243 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 370.000000,4638.000000, 0.073882,0.926118, 594 chr1 1186021 1186022 rs115960280 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1186195 1186196 rs572678014 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1186271 1186272 rs116388653 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 594 chr1 1186340 1186341 rs12059759 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ILLUMINA,SC_SNP,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1186736 1186737 rs58561267 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,SSMP, 2 -,T, 4592.000000,416.000000, 0.916933,0.083067, 594 chr1 1186747 1186748 rs201918057 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 978.000000,4030.000000, 0.195288,0.804712, 594 chr1 1186820 1186821 rs140918627 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, 594 chr1 1186997 1186998 rs113679913 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 866.000000,4142.000000, 0.172923,0.827077, 594 chr1 1187447 1187448 rs112615655 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 594 chr1 1187640 1187641 rs74491544 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop,maf-5-all-pops 594 chr1 1187866 1187867 rs112905538 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 425.000000,4583.000000, 0.084864,0.915136, 594 chr1 1187992 1187993 rs6603786 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,G, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop,maf-5-all-pops 594 chr1 1188129 1188130 rs6688457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop 594 chr1 1188179 1188180 rs7541831 0 + C C A/C genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.3478 0.230076 unknown exact 1 3 ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 65.000000,225.000000, 0.224138,0.775862, maf-5-some-pop,maf-5-all-pops 594 chr1 1188224 1188225 rs6603787 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 594 chr1 1188305 1188306 rs6690960 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 116.000000,4892.000000, 0.023163,0.976837, 594 chr1 1188943 1188944 rs112743287 0 + T T G/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 G,T, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1189604 1189605 rs116866065 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1189662 1189663 rs12060210 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,BUSHMAN,CORNELL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop 594 chr1 1190060 1190061 rs41307035 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop 594 chr1 1190205 1190206 rs75469826 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 594 chr1 1190206 1190207 rs41307037 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, 594 chr1 1190684 1190685 rs41303853 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1190913 1190914 rs35025185 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,T, 417.000000,4591.000000, 0.083267,0.916733, 594 chr1 1191650 1191651 rs115712376 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1191869 1191870 rs3818646 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop 594 chr1 1192514 1192515 rs7524470 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,WI_SSAHASNP, 2 A,G, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop 594 chr1 1192766 1192767 rs539731489 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 C,G, 4846.000000,162.000000, 0.967652,0.032348, 594 chr1 1192788 1192789 rs559299473 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 594 chr1 1192795 1192796 rs111483377 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop,maf-5-all-pops 594 chr1 1192962 1192963 rs112742853 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 594 chr1 1193020 1193021 rs193168761 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 594 chr1 1193111 1193112 rs115649588 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 594 chr1 1193431 1193432 rs111633162 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 374.000000,4634.000000, 0.074680,0.925319, 594 chr1 1193475 1193476 rs12066047 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 372.000000,4636.000000, 0.074281,0.925719, 594 chr1 1193586 1193587 rs59549363 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP, 2 -,T, 3235.000000,1773.000000, 0.645966,0.354034, 594 chr1 1193712 1193713 rs12070338 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop 594 chr1 1193722 1193723 rs12072310 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop 594 chr1 1193765 1193766 rs116167408 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,C, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 594 chr1 1193851 1193852 rs78035253 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 594 chr1 1194472 1194473 rs201926262 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 293.000000,4715.000000, 0.058506,0.941494, 594 chr1 1194544 1194545 rs77131666 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP, 2 A,T, 3487.000000,1521.000000, 0.696286,0.303714, 594 chr1 1194637 1194638 rs111692369 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 594 chr1 1194803 1194804 rs11804831 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3435.000000,1573.000000, 0.685903,0.314097, maf-5-some-pop,microattr-tpa 594 chr1 1195323 1195324 rs115283648 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 594 chr1 1195449 1195450 rs114216792 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 594 chr1 1195592 1195593 rs12069094 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 594 chr1 1195656 1195657 rs60397007 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 594 chr1 1195689 1195690 rs11260568 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 594 chr1 1195767 1195768 rs74942270 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 594 chr1 1195819 1195820 rs58785846 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 594 chr1 1195882 1195883 rs114569858 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 594 chr1 1196373 1196374 rs72894077 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 594 chr1 1196470 1196471 rs6673601 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 594 chr1 1196862 1196863 rs6659787 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 594 chr1 1197271 1197273 rs111706623 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,TISHKOFF, 2 -,TT, 356.000000,4652.000000, 0.071086,0.928914, 594 chr1 1197329 1197330 rs75805572 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,TISHKOFF, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, 594 chr1 1197540 1197541 rs115807277 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4873.000000,135.000000, 0.973043,0.026957, 594 chr1 1197590 1197591 rs6704013 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop 594 chr1 1197697 1197698 rs72631900 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 594 chr1 1197866 1197867 rs116082107 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 594 chr1 1198346 1198347 rs75114013 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 594 chr1 1198451 1198452 rs150671997 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1198496 1198496 rs549945459 0 + - - -/GGTGAACACAGACGCTACAGGC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GGTGAACACAGACGCTACAGGC, 4718.000000,290.000000, 0.942093,0.057907, 594 chr1 1198509 1198510 rs115272858 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1198577 1198578 rs188541999 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1198617 1198618 rs12563338 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 594 chr1 1199206 1199207 rs58352886 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, 594 chr1 1199211 1199211 rs559199060 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,A, 3066.000000,1942.000000, 0.612220,0.387780, 594 chr1 1199572 1199573 rs79797881 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4854.000000,154.000000, 0.969249,0.030751, 594 chr1 1199576 1199577 rs114566087 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 594 chr1 1200191 1200192 rs112631554 0 + C C C/G genomic single unknown 0 0 intron,missense exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4590.000000,418.000000, 0.916534,0.083467, 594 chr1 1200201 1200202 rs145877170 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 5 1000GENOMES,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 594 chr1 1200490 1200491 rs111487085 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1200946 1200946 rs537238625 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GT, 4599.000000,409.000000, 0.918331,0.081669, 594 chr1 1201215 1201216 rs11260569 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1201355 1201356 rs59074371 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 594 chr1 1201631 1201632 rs12402622 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CLINSEQ_SNP,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 594 chr1 1201639 1201640 rs11260570 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop 594 chr1 1201938 1201939 rs138355935 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 594 chr1 1201944 1201945 rs141828946 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, 594 chr1 1202436 1202437 rs139183246 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,T, 4836.000000,172.000000, 0.965655,0.034345, 594 chr1 1202470 1202471 rs149960518 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 594 chr1 1202656 1202675 rs367664081 0 + CAGCAAGGGGGAGAGTCAC CAGCAAGGGGGAGAGTCAC -/CAGCAAGGGGGAGAGTCAC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CAGCAAGGGGGAGAGTCAC, 166.000000,4842.000000, 0.033147,0.966853, 594 chr1 1203386 1203387 rs60981775 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop 594 chr1 1203463 1203464 rs114345030 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 594 chr1 1203617 1203618 rs376002876 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 594 chr1 1203731 1203732 rs76784742 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop,maf-5-all-pops 594 chr1 1203744 1203745 rs72894079 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 594 chr1 1204154 1204155 rs183159656 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1204224 1204231 rs553345530 0 + TTTTTTT TTTTTTT -/TTTTTTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTTTTTT, 94.000000,4914.000000, 0.018770,0.981230, 594 chr1 1204353 1204354 rs115137086 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 594 chr1 1204479 1204479 rs145781917 0 + - - -/CAT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CAT, 4565.000000,443.000000, 0.911542,0.088459, 594 chr1 1204582 1204583 rs540688116 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 90.000000,4918.000000, 0.017971,0.982029, 594 chr1 1205154 1205155 rs12073590 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 594 chr1 1205335 1205336 rs79455564 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 594 chr1 1205337 1205338 rs114976177 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 594 chr1 1205434 1205435 rs114928099 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop,maf-5-all-pops 594 chr1 1205975 1205976 rs56919565 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 594 chr1 1206618 1206619 rs6668223 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 594 chr1 1206777 1206778 rs141441333 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1206860 1206861 rs75189781 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 594 chr1 1207214 1207215 rs12068885 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4530.000000,478.000000, 0.904553,0.095447, 594 chr1 1208194 1208195 rs115231600 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 170.000000,4838.000000, 0.033946,0.966054, 594 chr1 1208275 1208276 rs79400130 0 + G G C/G genomic single by-frequency,by-1000genomes 0.000918 0.0214 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 2.000000,118.000000, 0.016667,0.983333, 594 chr1 1208286 1208287 rs114152485 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 594 chr1 1209183 1209183 rs142366119 0 + - - -/CGC/CGCCGC genomic insertion unknown 0 0 near-gene-5,untranslated-5 between 1 2 1000GENOMES,LUNTER, 3 -,CGC,CGCCGC, 3451.000000,1549.000000,8.000000, 0.689098,0.309305,0.001597, 594 chr1 1209481 1209482 rs111357358 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop,maf-5-all-pops 594 chr1 1210299 1210300 rs75855294 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 594 chr1 1210332 1210333 rs115554764 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 594 chr1 1210351 1210352 rs11260575 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 594 chr1 1210359 1210360 rs11260576 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops 594 chr1 1210434 1210435 rs74046660 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop 594 chr1 1210467 1210468 rs114964868 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,maf-5-all-pops 594 chr1 1210470 1210471 rs11260577 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 594 chr1 1210743 1210744 rs76370872 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 594 chr1 1210784 1210785 rs77333168 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1210847 1210848 rs56673092 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1608.000000,3400.000000, 0.321086,0.678914, maf-5-some-pop 594 chr1 1210962 1210963 rs6689813 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1987.000000,3021.000000, 0.396765,0.603235, maf-5-some-pop 594 chr1 1211291 1211292 rs6685064 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop 594 chr1 1211602 1211602 rs78351641 0 + - - -/G genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 3401.000000,1607.000000, 0.679113,0.320887, 594 chr1 1211926 1211927 rs4970430 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3341.000000,1667.000000, 0.667133,0.332867, 594 chr1 1212226 1212228 rs150897355 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AT, 171.000000,4837.000000, 0.034145,0.965855, 594 chr1 1212569 1212570 rs150531736 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 594 chr1 1212648 1212649 rs59225223 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 2393.000000,2615.000000, 0.477835,0.522165, 594 chr1 1212794 1212795 rs56210437 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1984.000000,3024.000000, 0.396166,0.603834, maf-5-some-pop,maf-5-all-pops 594 chr1 1213012 1213013 rs60358061 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, 594 chr1 1213125 1213126 rs112719924 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4673.000000,335.000000, 0.933107,0.066893, 594 chr1 1213210 1213210 rs565672730 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 3217.000000,1791.000000, 0.642372,0.357628, 594 chr1 1213222 1213223 rs113095492 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 A,T, 4936.000000,72.000000, 0.985623,0.014377, 594 chr1 1213223 1213224 rs7549601 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,GMI,HGSV,ILLUMINA-UK,WI_SSAHASNP, 2 A,T, 2381.000000,2627.000000, 0.475439,0.524561, 594 chr1 1213265 1213266 rs114531906 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 594 chr1 1213495 1213496 rs7512475 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1213787 1213787 rs59508795 0 + - - -/A genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 2631.000000,2377.000000, 0.525359,0.474641, 594 chr1 1213929 1213930 rs7552460 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, 594 chr1 1213935 1213936 rs6665791 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1974.000000,3034.000000, 0.394169,0.605831, maf-5-some-pop,maf-5-all-pops 594 chr1 1213994 1213995 rs143883945 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, 594 chr1 1214152 1214153 rs147007260 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 594 chr1 1214413 1214414 rs111920011 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1214541 1214542 rs80025552 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 594 chr1 1214677 1214678 rs115307287 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 594 chr1 1214804 1214805 rs113867217 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4504.000000,504.000000, 0.899361,0.100639, 594 chr1 1215077 1215078 rs74046665 0 + A A A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2855.000000,2153.000000, 0.570088,0.429912, maf-5-some-pop,maf-5-all-pops 594 chr1 1215108 1215109 rs79179971 0 + G G -/G genomic deletion unknown 0 0 near-gene-3,near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 2151.000000,2857.000000, 0.429513,0.570487, 594 chr1 1215110 1215111 rs536702299 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 594 chr1 1215135 1215136 rs74046666 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 594 chr1 1215259 1215260 rs74950664 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 594 chr1 1215261 1215262 rs57834430 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 594 chr1 1215380 1215381 rs80133983 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1215403 1215404 rs116639471 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 594 chr1 1215423 1215424 rs1268339 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SSMP,TISHKOFF, 2 C,T, 3476.000000,1532.000000, 0.694089,0.305911, maf-5-some-pop 594 chr1 1215711 1215712 rs12079515 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4459.000000,549.000000, 0.890375,0.109625, 594 chr1 1215721 1215722 rs187261378 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 80.000000,4928.000000, 0.015974,0.984026, 594 chr1 1215795 1215796 rs7547316 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, 594 chr1 1215848 1215849 rs7547329 0 + A A A/T genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,WI_SSAHASNP, 2 A,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 594 chr1 1215850 1215851 rs77053883 0 + A A A/T genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,T, 4950.000000,58.000000, 0.988419,0.011582, 594 chr1 1216194 1216195 rs55834051 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1594.000000,3414.000000, 0.318291,0.681709, maf-5-some-pop 594 chr1 1216257 1216258 rs79596825 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 594 chr1 1216469 1216470 rs57513698 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4875.000000,133.000000, 0.973442,0.026557, 594 chr1 1216542 1216543 rs377350215 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 594 chr1 1216550 1216552 rs57961296 0 + GG GG -/GG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,HGSV, 2 -,GG, 1597.000000,3411.000000, 0.318890,0.681110, 594 chr1 1217010 1217011 rs1262894 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF, 2 A,C, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop,maf-5-all-pops 594 chr1 1217019 1217020 rs1262895 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop 594 chr1 1217020 1217021 rs57558541 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 594 chr1 1217257 1217258 rs1262896 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop 594 chr1 1218085 1218086 rs6603788 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2657.000000,2351.000000, 0.530551,0.469449, maf-5-some-pop,maf-5-all-pops 594 chr1 1218188 1218189 rs142333287 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 594 chr1 1218333 1218334 rs146421901 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, 594 chr1 1218544 1218545 rs114864479 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 594 chr1 1218654 1218655 rs114027205 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 594 chr1 1218793 1218794 rs113265331 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 594 chr1 1218799 1218800 rs12076303 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 594 chr1 1218851 1218852 rs7519613 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4460.000000,548.000000, 0.890575,0.109425, 594 chr1 1218889 1218890 rs7519699 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 533.000000,4475.000000, 0.106430,0.893570, 594 chr1 1219034 1219035 rs111348156 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 594 chr1 1219774 1219775 rs12077700 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 594 chr1 1219930 1219931 rs12073801 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 G,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 594 chr1 1219940 1219941 rs115834287 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 594 chr1 1219963 1219964 rs536630346 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1220135 1220136 rs2144440 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop 594 chr1 1220222 1220223 rs77848928 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 594 chr1 1220366 1220367 rs74046667 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 594 chr1 1220424 1220425 rs6662635 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop 594 chr1 1220503 1220504 rs2064600 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1404.000000,3604.000000, 0.280351,0.719649, maf-5-some-pop 594 chr1 1220609 1220610 rs115561814 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 594 chr1 1220764 1220765 rs72896205 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 594 chr1 1220821 1220822 rs113921179 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 594 chr1 1220924 1220925 rs1739854 0 + A A A/G genomic single by-frequency,by-hapmap 0.025404 0.109803 intron exact 1 1 SC_JCM, 2 A,G, 537.000000,7.000000, 0.987132,0.012868, maf-5-some-pop 594 chr1 1220953 1220954 rs12751100 0 + G G A/G genomic single unknown 0 0 coding-synon,intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2217.000000,2791.000000, 0.442692,0.557308, maf-5-some-pop 594 chr1 1221000 1221001 rs72896210 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop,maf-5-all-pops 594 chr1 1221054 1221055 rs568430583 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 594 chr1 1221137 1221138 rs11260578 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1521.000000,3487.000000, 0.303714,0.696286, maf-5-some-pop 594 chr1 1221275 1221276 rs113638421 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 594 chr1 1221301 1221302 rs113398060 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 594 chr1 1221435 1221436 rs2229831 0 + A A A/T cDNA single by-cluster 0.035077 0.127702 ncRNA,missense exact 1 2 ILLUMINA,WICVAR, 2 A,T, 55.000000,1.000000, 0.982143,0.017857, 594 chr1 1221716 1221717 rs13306647 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,IMCJ-GDT,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3485.000000,1523.000000, 0.695887,0.304113, maf-5-some-pop,maf-5-all-pops 594 chr1 1221727 1221728 rs72896212 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 594 chr1 1221911 1221912 rs6660742 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,BUSHMAN, 2 C,T, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 594 chr1 1221917 1221918 rs563942515 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 594 chr1 1222406 1222407 rs946415 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,HGSV,ILLUMINA-UK,NHLBI-ESP,TSC-CSHL, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 594 chr1 1222597 1222598 rs74046669 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop 594 chr1 1222689 1222690 rs115316182 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop 594 chr1 1222738 1222739 rs2273273 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,TISHKOFF,YUSUKE, 2 C,G, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 594 chr1 1222957 1222958 rs111819661 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,NHLBI-ESP,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 594 chr1 1223384 1223385 rs2228579 0 + G G C/G genomic single unknown 0 0 ncRNA,missense exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,WIAF-CSNP, 2 C,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 594 chr1 1223426 1223427 rs13306645 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,IMCJ-GDT,SSMP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1223465 1223466 rs58081058 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,C, 872.000000,4136.000000, 0.174121,0.825879, 594 chr1 1223528 1223529 rs78481580 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop,maf-5-all-pops 594 chr1 1223569 1223570 rs114486503 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop,maf-5-all-pops 594 chr1 1223571 1223572 rs114699488 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 594 chr1 1223583 1223584 rs372889508 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 594 chr1 1223607 1223608 rs532469927 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, 594 chr1 1223937 1223938 rs556622617 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 109.000000,4899.000000, 0.021765,0.978235, 594 chr1 1224788 1224789 rs560192666 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 107.000000,4901.000000, 0.021366,0.978634, 594 chr1 1224801 1224802 rs532405930 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1225115 1225116 rs546071166 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1225167 1225168 rs562688954 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 594 chr1 1225168 1225169 rs531512382 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1225216 1225217 rs548120285 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, 594 chr1 1225247 1225248 rs547342220 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 217.000000,4791.000000, 0.043331,0.956669, 594 chr1 1225265 1225266 rs202240236 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 424.000000,4584.000000, 0.084665,0.915335, 594 chr1 1225267 1225268 rs536010590 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 594 chr1 1225321 1225322 rs58752875 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,HGSV, 2 C,T, 439.000000,4569.000000, 0.087660,0.912340, 594 chr1 1225424 1225425 rs58611942 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 3527.000000,1481.000000, 0.704273,0.295727, 594 chr1 1225430 1225431 rs547480775 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1225431 1225432 rs564266723 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1225483 1225484 rs58362053 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 431.000000,4577.000000, 0.086062,0.913938, 594 chr1 1225511 1225512 rs535283541 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, 594 chr1 1225552 1225553 rs5026410 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ABI,HGSV, 2 C,T, 2970.000000,2038.000000, 0.593051,0.406949, 594 chr1 1225558 1225559 rs539385886 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 594 chr1 1225559 1225560 rs555910736 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 594 chr1 1225562 1225562 rs541173872 0 + - - -/CC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CC, 4908.000000,100.000000, 0.980032,0.019968, 594 chr1 1225565 1225566 rs370603882 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1225570 1225571 rs1977346 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,SSMP,TSC-CSHL, 2 C,T, 3928.000000,1080.000000, 0.784345,0.215655, 594 chr1 1225575 1225576 rs1977347 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TSC-CSHL, 2 C,T, 542.000000,4466.000000, 0.108227,0.891773, 594 chr1 1225580 1225580 rs369813446 0 + - - -/CC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CC, 4941.000000,67.000000, 0.986621,0.013379, 594 chr1 1225611 1225612 rs1570866 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TSC-CSHL, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 594 chr1 1225640 1225641 rs2748384 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP, 2 A,C, 2458.000000,2550.000000, 0.490815,0.509185, maf-5-some-pop,maf-5-all-pops 594 chr1 1225823 1225824 rs115732504 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 594 chr1 1225944 1225945 rs79772714 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop,maf-5-all-pops 594 chr1 1225958 1225959 rs1570867 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,IMCJ-GDT,NHLBI-ESP,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops 594 chr1 1226062 1226063 rs13306651 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 10 1000GENOMES,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 594 chr1 1226101 1226102 rs2273274 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1314.000000,3694.000000, 0.262380,0.737620, maf-5-some-pop 594 chr1 1226230 1226231 rs13306638 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 594 chr1 1226232 1226233 rs113099499 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop,maf-5-all-pops 594 chr1 1226266 1226267 rs13306640 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 594 chr1 1226291 1226292 rs2273276 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 16 1000GENOMES,ABI,BGI,CLINSEQ_SNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop 594 chr1 1226349 1226350 rs114416421 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, 594 chr1 1226422 1226423 rs12743218 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,SI_EXO,SSAHASNP, 2 C,T, 64.000000,4944.000000, 0.012780,0.987220, 594 chr1 1226650 1226651 rs2229833 0 + G G C/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,WICVAR, 2 C,G, 91.000000,4917.000000, 0.018171,0.981829, 594 chr1 1226756 1226757 rs6690013 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 549.000000,4459.000000, 0.109625,0.890375, maf-5-some-pop 594 chr1 1226850 1226851 rs61730205 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,BUSHMAN,CORNELL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 594 chr1 1226888 1226889 rs609805 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF,WICVAR, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 594 chr1 1227111 1227112 rs140043159 0 + G G -/G genomic deletion unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,G, 170.000000,4838.000000, 0.033946,0.966054, 594 chr1 1227181 1227182 rs13306642 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,IMCJ-GDT,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 594 chr1 1227243 1227244 rs2239609 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop 594 chr1 1227248 1227249 rs621668 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop 594 chr1 1227411 1227412 rs112571439 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 594 chr1 1227846 1227847 rs114963616 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1228325 1228326 rs72896218 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,T, 4899.000000,109.000000, 0.978235,0.021765, 594 chr1 1228796 1228797 rs79565498 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 594 chr1 1229113 1229114 rs2281459 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,GMI,NHLBI-ESP,SSMP,YUSUKE, 2 A,C, 1106.000000,3902.000000, 0.220847,0.779153, 594 chr1 1229355 1229356 rs200974083 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 594 chr1 1229372 1229373 rs544372915 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 594 chr1 1229382 1229383 rs143737257 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,WARNICH_LAB, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, 594 chr1 1229679 1229680 rs2477781 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 594 chr1 1229769 1229770 rs6669227 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 594 chr1 1230029 1230030 rs146086079 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 594 chr1 1230418 1230419 rs1272959 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2488.000000,2520.000000, 0.496805,0.503195, maf-5-some-pop,maf-5-all-pops 594 chr1 1230439 1230440 rs12041067 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops 594 chr1 1231000 1231001 rs74810910 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 594 chr1 1231333 1231334 rs74045416 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 594 chr1 1231506 1231507 rs619608 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KWOK,NHLBI-ESP,SC_JCM,SC_SNP,SSMP, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop 594 chr1 1231586 1231587 rs139600717 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1231743 1231744 rs113414019 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 594 chr1 1231782 1231783 rs115482194 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 594 chr1 1232174 1232175 rs376577103 0 + C C -/C genomic deletion unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,C, 232.000000,4776.000000, 0.046326,0.953674, 594 chr1 1232195 1232203 rs148690159 0 + CGCACACG CGCACACG -/CGCACACG genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,CGCACACG, 1116.000000,3892.000000, 0.222843,0.777157, 594 chr1 1232206 1232206 rs557094073 0 + - - -/GT genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,GT, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1232228 1232229 rs116263241 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 594 chr1 1232232 1232233 rs115237750 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 594 chr1 1232318 1232319 rs604618 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 1363.000000,3645.000000, 0.272165,0.727835, maf-5-some-pop 594 chr1 1232431 1232433 rs59656555 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,HGSV,LUNTER,TISHKOFF, 2 -,CA, 470.000000,4538.000000, 0.093850,0.906150, 594 chr1 1232484 1232485 rs532722806 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 594 chr1 1232485 1232486 rs549367232 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4924.000000,84.000000, 0.983227,0.016773, 594 chr1 1232502 1232503 rs115102198 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 594 chr1 1232547 1232548 rs142090261 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4329.000000,679.000000, 0.864417,0.135583, 594 chr1 1232592 1232593 rs56153290 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,HGSV, 2 A,G, 660.000000,4348.000000, 0.131789,0.868211, 594 chr1 1232754 1232756 rs537348398 0 + GT GT -/GT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,GT, 498.000000,4510.000000, 0.099441,0.900559, 594 chr1 1232792 1232793 rs1262914 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KWOK,PJP,SSMP, 2 A,G, 3396.000000,1612.000000, 0.678115,0.321885, 594 chr1 1232818 1232819 rs545203635 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 614.000000,4394.000000, 0.122604,0.877396, 594 chr1 1232860 1232861 rs532883461 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,T, 110.000000,4898.000000, 0.021965,0.978035, 594 chr1 1232861 1232862 rs543149916 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, 594 chr1 1232887 1232888 rs563273462 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, 594 chr1 1232902 1232903 rs565845325 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4669.000000,339.000000, 0.932308,0.067692, 594 chr1 1232907 1232908 rs571734827 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, 594 chr1 1232982 1232983 rs11260581 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 A,G, 612.000000,4396.000000, 0.122204,0.877796, 594 chr1 1232983 1232984 rs11260582 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 G,T, 612.000000,4396.000000, 0.122204,0.877796, 594 chr1 1232994 1232995 rs11260583 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SC_SNP,SSMP, 2 A,C, 3946.000000,1062.000000, 0.787939,0.212061, 594 chr1 1232999 1233000 rs536288291 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, 594 chr1 1233044 1233045 rs183831509 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, 594 chr1 1233064 1233065 rs188376002 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, 594 chr1 1233072 1233072 rs577149278 0 + - - -/AT genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,AT, 3391.000000,1617.000000, 0.677117,0.322883, 594 chr1 1233084 1233085 rs6679281 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL, 2 A,T, 3017.000000,1991.000000, 0.602436,0.397564, 594 chr1 1233085 1233086 rs6674303 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL, 2 C,T, 3000.000000,2008.000000, 0.599042,0.400958, 594 chr1 1233112 1233114 rs371673082 0 + GT GT -/GT genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,SSIP,SSMP, 2 -,GT, 595.000000,4413.000000, 0.118810,0.881190, 594 chr1 1233126 1233127 rs141337505 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4439.000000,569.000000, 0.886382,0.113618, 594 chr1 1233131 1233132 rs188547671 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4439.000000,569.000000, 0.886382,0.113618, 594 chr1 1233331 1233332 rs111910661 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 594 chr1 1233940 1233941 rs1739855 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2488.000000,2520.000000, 0.496805,0.503195, maf-5-some-pop,maf-5-all-pops 594 chr1 1234168 1234169 rs112792787 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 594 chr1 1234553 1234554 rs116119245 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 594 chr1 1234590 1234591 rs113260116 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 594 chr1 1234762 1234763 rs143128930 0 + G G -/G genomic deletion unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF,WARNICH_LAB, 2 -,G, 598.000000,4410.000000, 0.119409,0.880591, 594 chr1 1234954 1234955 rs41306990 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SI_EXO, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1235709 1235710 rs640712 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 2503.000000,2505.000000, 0.499800,0.500200, maf-5-some-pop 594 chr1 1235791 1235792 rs61559999 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop,maf-5-all-pops 594 chr1 1235844 1235845 rs60785581 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 594 chr1 1236855 1236856 rs115765949 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1237035 1237036 rs2477782 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2506.000000,2502.000000, 0.500399,0.499601, maf-5-some-pop 594 chr1 1237493 1237494 rs114814219 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1237688 1237694 rs113880200 0 + GAGCCG GAGCCG -/GAGCCG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,GAGCCG, 124.000000,4884.000000, 0.024760,0.975240, 594 chr1 1237828 1237829 rs11586188 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 594 chr1 1238215 1238216 rs74045417 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, 594 chr1 1238491 1238492 rs12408158 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 A,G, 807.000000,4201.000000, 0.161142,0.838858, maf-5-some-pop,maf-5-all-pops 594 chr1 1238582 1238583 rs145087137 0 + G G A/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1239055 1239055 rs146185859 0 + - - -/CCT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CCT, 656.000000,4352.000000, 0.130990,0.869010, 594 chr1 1239076 1239077 rs114969353 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 594 chr1 1239338 1239339 rs11260584 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3602.000000,1406.000000, 0.719249,0.280751, maf-5-some-pop 594 chr1 1239707 1239708 rs115928552 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4932.000000,76.000000, 0.984824,0.015176, 594 chr1 1239796 1239797 rs74564044 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1239934 1239935 rs12410087 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4206.000000,802.000000, 0.839856,0.160144, maf-5-some-pop 594 chr1 1239952 1239953 rs10399878 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 597.000000,4411.000000, 0.119209,0.880791, maf-5-some-pop 594 chr1 1240191 1240192 rs138176063 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 594 chr1 1240236 1240237 rs12409587 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,maf-5-all-pops 594 chr1 1240458 1240459 rs56653467 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 594 chr1 1241022 1241023 rs1536167 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop 594 chr1 1241279 1241280 rs115282354 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,maf-5-all-pops 594 chr1 1241528 1241529 rs1536168 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop 594 chr1 1241562 1241563 rs74045418 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop,maf-5-all-pops 594 chr1 1241721 1241724 rs144494080 0 + AGA AGA -/AGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AGA, 214.000000,4794.000000, 0.042732,0.957268, 594 chr1 1241745 1241746 rs77293210 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 594 chr1 1241834 1241835 rs11810839 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 594 chr1 1241902 1241903 rs3737719 0 - C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 594 chr1 1242214 1242215 rs4970431 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 594 chr1 1242287 1242288 rs115464315 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1242311 1242312 rs114967114 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 594 chr1 1243031 1243032 rs79254519 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1243558 1243569 rs139775692 0 + GGGCGCGGGGA GGGCGCGGGGA -/GGGCGCGGGGA genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GGGCGCGGGGA, 1939.000000,3069.000000, 0.387181,0.612819, 594 chr1 1243663 1243664 rs140656780 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1243895 1243896 rs61766198 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops 594 chr1 1244454 1244455 rs113647073 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, 594 chr1 1244637 1244638 rs12094447 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA,missense exact 1 9 1000GENOMES,APPLERA_GI,BUSHMAN,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SC_SNP,SEATTLESEQ,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop 594 chr1 1245367 1245368 rs11590283 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop 594 chr1 1245371 1245372 rs74340666 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 594 chr1 1245487 1245488 rs555204352 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 594 chr1 1246290 1246293 rs149584797 0 + ACG ACG -/ACG genomic deletion unknown 0 0 near-gene-3,cds-indel range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,ACG, 136.000000,4872.000000, 0.027157,0.972844, 594 chr1 1246302 1246303 rs41285824 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 6 1000GENOMES,CLINSEQ_SNP,CORNELL,EVA-GONL,NHLBI-ESP,SI_EXO, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 594 chr1 1246437 1246438 rs115163464 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1246483 1246484 rs112356049 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 594 chr1 1246486 1246487 rs78028248 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 594 chr1 1247092 1247093 rs77183802 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,ncRNA,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 594 chr1 1247185 1247186 rs142783360 0 + G G -/G genomic deletion unknown 0 0 intron,near-gene-3,ncRNA,untranslated-3 exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,G, 215.000000,4793.000000, 0.042931,0.957069, 594 chr1 1247493 1247494 rs12103 0 + T T C/T genomic single unknown 0 0 coding-synon,intron,near-gene-3,ncRNA exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,SEATTLESEQ,SEQUENOM,SSMP, 2 C,T, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,microattr-tpa 594 chr1 1247554 1247555 rs113412865 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop,maf-5-all-pops 594 chr1 1247587 1247588 rs568445177 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 594 chr1 1248585 1248586 rs74045438 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, 594 chr1 1249186 1249187 rs12142199 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5,ncRNA exact 1 24 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop 594 chr1 1250317 1250318 rs12095333 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 10 1000GENOMES,BUSHMAN,CORNELL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 594 chr1 1251208 1251209 rs529698451 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 594 chr1 1251231 1251232 rs75731392 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,maf-5-all-pops 594 chr1 1251322 1251323 rs112466538 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 594 chr1 1251387 1251388 rs112689067 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 594 chr1 1251421 1251422 rs77997846 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 594 chr1 1252260 1252261 rs183278404 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 594 chr1 1252308 1252309 rs35031478 0 - A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 594 chr1 1252399 1252400 rs55998830 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1252495 1252496 rs9658804 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 594 chr1 1252657 1252658 rs9659696 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, 594 chr1 1253898 1253899 rs78420767 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 594 chr1 1254068 1254069 rs76511663 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop,maf-5-all-pops 594 chr1 1254135 1254136 rs4970432 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3602.000000,1406.000000, 0.719249,0.280751, maf-5-some-pop,maf-5-all-pops 594 chr1 1254170 1254171 rs76855900 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 594 chr1 1254502 1254503 rs200347460 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 594 chr1 1254840 1254841 rs10907179 0 - C C C/G genomic single unknown 0 0 coding-synon,intron exact 1 26 1000GENOMES,APPLERA_GI,BCMHGSC_JDW,BGI,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 594 chr1 1255027 1255028 rs112653110 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 594 chr1 1255129 1255130 rs10449893 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 461.000000,4547.000000, 0.092053,0.907947, maf-5-some-pop 594 chr1 1255250 1255251 rs115771716 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1255286 1255287 rs10449892 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 594 chr1 1255436 1255437 rs77433625 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 594 chr1 1256032 1256033 rs11801967 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4561.000000,447.000000, 0.910743,0.089257, maf-5-some-pop 594 chr1 1256249 1256250 rs76181513 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop,maf-5-all-pops 594 chr1 1256607 1256608 rs76947392 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 594 chr1 1256956 1256957 rs111387554 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 594 chr1 1257592 1257593 rs1810745 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 655.000000,4353.000000, 0.130791,0.869209, maf-5-some-pop 594 chr1 1257806 1257807 rs74045442 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,C, 133.000000,4875.000000, 0.026557,0.973442, 594 chr1 1258245 1258246 rs3845293 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1417.000000,3591.000000, 0.282947,0.717053, maf-5-some-pop,maf-5-all-pops 594 chr1 1258258 1258259 rs557712856 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSIP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 594 chr1 1258526 1258527 rs140361978 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1258720 1258721 rs143494780 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1258732 1258733 rs148017626 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1259233 1259233 rs201255802 0 + - - -/A genomic insertion unknown 0 0 intron,near-gene-5 between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4713.000000,295.000000, 0.941094,0.058906, 594 chr1 1259481 1259482 rs552994570 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 594 chr1 1259513 1259514 rs573449235 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 594 chr1 1259560 1259561 rs189752537 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 1658.000000,3350.000000, 0.331070,0.668930, 594 chr1 1259599 1259600 rs143327728 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4794.000000,214.000000, 0.957268,0.042732, 594 chr1 1259946 1259947 rs373639298 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 83.000000,4925.000000, 0.016573,0.983427, 594 chr1 1260152 1260153 rs183819474 0 + G G G/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 594 chr1 1260167 1260168 rs61766199 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,C, 3550.000000,1458.000000, 0.708866,0.291134, 594 chr1 1260461 1260462 rs144022893 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, 594 chr1 1260732 1260733 rs307346 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop,maf-5-all-pops 594 chr1 1261079 1261080 rs3845294 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,ABI,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 201.000000,4807.000000, 0.040136,0.959864, 594 chr1 1261090 1261091 rs111976402 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, 594 chr1 1261132 1261133 rs3813208 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4269.000000,739.000000, 0.852436,0.147564, 594 chr1 1261346 1261347 rs182701918 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1261823 1261824 rs307348 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1262275 1262276 rs113667133 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 594 chr1 1263361 1263362 rs4970433 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3579.000000,1429.000000, 0.714657,0.285343, 594 chr1 1263450 1263451 rs139510351 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, 594 chr1 1264135 1264136 rs307352 0 - A A A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic 8 1000GENOMES,BUSHMAN,ENSEMBL,JMKIDD_LAB,KWOK,MGC_GENOME_DIFF,SC_JCM,TISHKOFF, 4 A,C,G,T, 4784.000000,224.000000,224.000000,4784.000000, 0.477636,0.022364,0.022364,0.477636, 594 chr1 1264333 1264334 rs141109567 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, 594 chr1 1264538 1264539 rs307354 0 - G G C/G genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 594 chr1 1264571 1264571 rs202021159 0 + - - -/GGAGGAC genomic insertion unknown 0 0 near-gene-3 between 1 1 1000GENOMES, 2 -,GGAGGAC, 4875.000000,133.000000, 0.973442,0.026557, 594 chr1 1264732 1264733 rs3933040 0 - C C C/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1265050 1265051 rs113714998 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, 594 chr1 1265126 1265127 rs112425550 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 594 chr1 1265153 1265154 rs307355 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3824.000000,1184.000000, 0.763578,0.236422, clinically-assoc,has-omim-omia 594 chr1 1265447 1265448 rs112853762 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, 594 chr1 1266424 1266425 rs138272841 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, 594 chr1 1266475 1266476 rs3855954 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 594 chr1 1266504 1266505 rs113667724 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 G,T, 4859.000000,149.000000, 0.970248,0.029752, 594 chr1 1266737 1266738 rs76755863 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CESG,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,MPI_MOLGEN,NHLBI-ESP,RWHITE, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 594 chr1 1266739 1266740 rs141430443 0 + T T A/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN,NHLBI-ESP,WARNICH_LAB, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, 594 chr1 1267045 1267046 rs78847442 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1267325 1267325 rs200330269 0 + - - -/C genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,C, 4059.000000,949.000000, 0.810503,0.189497, 594 chr1 1267650 1267651 rs111615792 0 + G G A/G genomic single unknown 0 0 missense exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 594 chr1 1268009 1268010 rs147600530 0 + G G G/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 G,T, 4929.000000,79.000000, 0.984225,0.015775, 594 chr1 1268158 1268159 rs3813210 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4304.000000,704.000000, 0.859425,0.140575, maf-5-some-pop 594 chr1 1268194 1268195 rs3813211 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 684.000000,4324.000000, 0.136581,0.863419, 594 chr1 1268347 1268348 rs111703380 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,RWHITE,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 594 chr1 1268549 1268550 rs61766206 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1268846 1268847 rs307378 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 594 chr1 1269003 1269004 rs140035477 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,RWHITE, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 594 chr1 1269075 1269076 rs148260692 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,C, 4922.000000,86.000000, 0.982827,0.017173, 594 chr1 1269487 1269488 rs112507608 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,RWHITE,TISHKOFF, 2 A,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,maf-5-all-pops 594 chr1 1269553 1269554 rs307377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CESG,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, maf-5-some-pop 594 chr1 1269887 1269888 rs139522421 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,C, 82.000000,4926.000000, 0.016374,0.983626, 594 chr1 1269920 1269921 rs307375 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 C,T, 4776.000000,232.000000, 0.953674,0.046326, 594 chr1 1270048 1270049 rs113534227 0 + T T G/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 149.000000,4859.000000, 0.029752,0.970248, 594 chr1 1270131 1270132 rs72634803 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 594 chr1 1270328 1270329 rs188647 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1270358 1270359 rs307374 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, 594 chr1 1270452 1270453 rs11488701 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4563.000000,445.000000, 0.911142,0.088858, 594 chr1 1270481 1270482 rs377021118 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, 594 chr1 1270894 1270895 rs61735961 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,APPLERA_GI,BUSHMAN,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 594 chr1 1271138 1271139 rs111452125 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 594 chr1 1271174 1271175 rs307373 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1271941 1271942 rs111315662 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4419.000000,589.000000, 0.882388,0.117612, 594 chr1 1272044 1272045 rs142868903 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 594 chr1 1272227 1272228 rs142333038 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 594 chr1 1272635 1272636 rs138177008 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WARNICH_LAB, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 594 chr1 1274241 1274242 rs307369 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1274349 1274350 rs307368 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 881.000000,4127.000000, 0.175919,0.824081, maf-5-some-pop 594 chr1 1274540 1274541 rs307367 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 7 1000GENOMES,BUSHMAN,ENSEMBL,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, 594 chr1 1275199 1275200 rs201165686 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 594 chr1 1275715 1275716 rs112871502 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,T, 445.000000,4563.000000, 0.088858,0.911142, 594 chr1 1275955 1275956 rs111883533 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, 594 chr1 1276126 1276126 rs199520509 0 + - - -/CA genomic insertion unknown 0 0 intron,near-gene-5 between 1 4 1000GENOMES,EVA-GONL,GMI,TISHKOFF, 2 -,CA, 4564.000000,444.000000, 0.911342,0.088658, 594 chr1 1276191 1276203 rs200862897 0 + CACACACCTGCA CACACACCTGCA -/CACACACCTGCA genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CACACACCTGCA, 337.000000,4671.000000, 0.067292,0.932708, 594 chr1 1276219 1276221 rs202012797 0 + CG CG -/CG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,CG, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1276235 1276236 rs371269276 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, 594 chr1 1276362 1276363 rs140964625 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 444.000000,4564.000000, 0.088658,0.911342, 594 chr1 1276424 1276425 rs149987725 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, 594 chr1 1276458 1276459 rs307365 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,C, 4123.000000,885.000000, 0.823283,0.176717, 594 chr1 1276477 1276478 rs307364 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 G,T, 4125.000000,883.000000, 0.823682,0.176318, 594 chr1 1276497 1276498 rs138615630 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1276625 1276626 rs113665540 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 594 chr1 1276701 1276702 rs111203438 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, 594 chr1 1276742 1276744 rs200805477 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,AC, 639.000000,4369.000000, 0.127596,0.872404, 594 chr1 1276811 1276812 rs307363 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, 594 chr1 1276920 1276922 rs201306306 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,TISHKOFF,WARNICH_LAB, 2 -,CA, 257.000000,4751.000000, 0.051318,0.948682, 594 chr1 1276930 1276932 rs75244934 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CA, 1886.000000,3122.000000, 0.376597,0.623403, 594 chr1 1276938 1276939 rs376494450 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,GMI, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 594 chr1 1276972 1276973 rs188969152 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,MPI_MOLGEN, 2 C,G, 661.000000,4347.000000, 0.131989,0.868011, 594 chr1 1276973 1276973 rs145370195 0 + - - -/ACAC genomic insertion unknown 0 0 intron,near-gene-5 between 1 3 1000GENOMES,BILGI_BIOE,BL, 2 -,ACAC, 1267.000000,3741.000000, 0.252995,0.747005, 594 chr1 1277182 1277183 rs61735963 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,CORNELL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,PJP,TISHKOFF, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop,maf-5-all-pops 594 chr1 1277595 1277596 rs182531 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop,maf-5-all-pops 594 chr1 1277648 1277649 rs146525333 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 G,T, 4566.000000,442.000000, 0.911741,0.088259, 594 chr1 1277734 1277735 rs140992194 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 594 chr1 1278236 1278237 rs307361 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, 594 chr1 1278252 1278253 rs111609577 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, 594 chr1 1278637 1278639 rs141336862 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BL,PJP,SSMP, 2 -,CC, 4816.000000,192.000000, 0.961661,0.038339, 594 chr1 1278644 1278645 rs554318700 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, 594 chr1 1278646 1278647 rs574483420 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 445.000000,4563.000000, 0.088858,0.911142, 594 chr1 1278752 1278753 rs113190394 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4711.000000,297.000000, 0.940695,0.059305, 594 chr1 1280013 1280014 rs307359 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,maf-5-all-pops 594 chr1 1280140 1280141 rs112545589 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 594 chr1 1280491 1280492 rs113543280 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, 594 chr1 1280802 1280803 rs141929348 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, 594 chr1 1280807 1280808 rs71628954 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1281344 1281345 rs307357 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 871.000000,4137.000000, 0.173922,0.826078, 594 chr1 1281444 1281445 rs113475223 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 594 chr1 1281692 1281693 rs150214790 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1281832 1281833 rs113231348 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, 594 chr1 1281838 1281839 rs112495999 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 594 chr1 1282971 1282972 rs150476868 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 G,T, 4877.000000,131.000000, 0.973842,0.026158, 594 chr1 1283808 1283809 rs542715971 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 67.000000,4941.000000, 0.013379,0.986621, 594 chr1 1283853 1283854 rs116297005 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 594 chr1 1284489 1284490 rs150789461 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-5 exact 1 5 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP,WARNICH_LAB, 2 A,G, 3821.000000,1187.000000, 0.762979,0.237021, 594 chr1 1284939 1284940 rs76261644 0 + A A A/C genomic single unknown 0 0 near-gene-5,missense exact 1 2 1000GENOMES,ENSEMBL, 2 A,C, 0.000000,5008.000000, 0.000000,1.000000, 594 chr1 1285135 1285136 rs184276234 0 + C C C/T genomic single unknown 0 0 near-gene-5,missense exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1285357 1285358 rs11587525 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,SSMP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1286785 1286786 rs113488343 0 + A A A/T genomic single unknown 0 0 missense exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,T, 4378.000000,630.000000, 0.874201,0.125799, 594 chr1 1286803 1286806 rs547089985 0 + GAG GAG -/GAG genomic deletion unknown 0 0 cds-indel range 1 2 1000GENOMES,SSIP, 2 -,GAG, 563.000000,4445.000000, 0.112420,0.887580, 594 chr1 1286820 1286821 rs61766214 0 + G G C/G genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI, 2 C,G, 4134.000000,874.000000, 0.825479,0.174521, 594 chr1 1286896 1286897 rs34380086 0 - G G C/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 594 chr1 1286966 1286967 rs307379 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 594 chr1 1287249 1287250 rs147805614 0 + C C C/G genomic single unknown 0 0 untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 594 chr1 1287254 1287255 rs139437599 0 + C C A/C genomic single unknown 0 0 untranslated-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 210.000000,4798.000000, 0.041933,0.958067, 594 chr1 1287398 1287399 rs151108896 0 + T T A/T genomic single unknown 0 0 untranslated-5 exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 A,T, 216.000000,4792.000000, 0.043131,0.956869, 594 chr1 1287448 1287449 rs307381 0 - T T A/T genomic single unknown 0 0 untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1287482 1287483 rs112093510 0 + A A A/C genomic single unknown 0 0 untranslated-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4703.000000,305.000000, 0.939097,0.060903, 594 chr1 1287561 1287562 rs111856013 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, 594 chr1 1288297 1288298 rs142824999 0 + G G A/G genomic single unknown 0 0 untranslated-3,untranslated-5 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 594 chr1 1288423 1288424 rs112179552 0 + C C C/T genomic single unknown 0 0 untranslated-3,untranslated-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, 594 chr1 1288685 1288685 rs566511825 0 + - - -/C genomic insertion unknown 0 0 near-gene-5,frameshift,untranslated-3 between 1 1 1000GENOMES, 2 -,C, 4917.000000,91.000000, 0.981829,0.018171, 594 chr1 1288837 1288838 rs111489086 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, 594 chr1 1288925 1288926 rs148936718 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1289873 1289874 rs61730211 0 + C C A/C genomic single unknown 0.046485 0.145196 near-gene-5,missense exact 1 1 CORNELL, 2 A,C, 1.000000,41.000000, 0.023810,0.976190, 594 chr1 1289910 1289911 rs4970365 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4149.000000,859.000000, 0.828474,0.171526, 594 chr1 1290407 1290408 rs147996767 0 + A A A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4647.000000,361.000000, 0.927915,0.072085, 594 chr1 1290580 1290581 rs189632301 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,WARNICH_LAB, 2 A,G, 362.000000,4646.000000, 0.072284,0.927716, 594 chr1 1290592 1290600 rs578255813 0 + GGGAGCTG GGGAGCTG -/GGGAGCTG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,GGGAGCTG, 293.000000,4715.000000, 0.058506,0.941494, 594 chr1 1291084 1291085 rs181929025 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 1 1000GENOMES, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, 594 chr1 1291159 1291160 rs201260508 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,A, 5008.000000,0.000000, 1.000000,0.000000, 594 chr1 1291506 1291507 rs116792145 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop,maf-5-all-pops 594 chr1 1291707 1291708 rs114444027 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop,maf-5-all-pops 594 chr1 1292130 1292131 rs141676214 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 594 chr1 1292386 1292387 rs202220998 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,A, 447.000000,4561.000000, 0.089257,0.910743, 594 chr1 1292425 1292426 rs35694341 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1292625 1292626 rs2649607 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,ENSEMBL,ILLUMINA,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,maf-5-all-pops 594 chr1 1293342 1293343 rs4970438 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 501.000000,4507.000000, 0.100040,0.899960, 594 chr1 1293763 1293764 rs34841888 0 - G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1294036 1294037 rs138031700 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1294286 1294287 rs12731385 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3564.000000,1444.000000, 0.711661,0.288339, 594 chr1 1294381 1294382 rs61766232 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 4 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 594 chr1 1294469 1294470 rs141483437 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, 594 chr1 1294927 1294928 rs2649608 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, 594 chr1 1295093 1295103 rs200418481 0 + ACCCCACCCC ACCCCACCCC -/ACCCCACCCC genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,ACCCCACCCC, 292.000000,4716.000000, 0.058307,0.941693, 594 chr1 1295146 1295147 rs74045444 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 594 chr1 1295882 1295882 rs564906656 0 + - - -/GGGGCGGGC genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,GGGGCGGGC, 868.000000,4140.000000, 0.173323,0.826677, 594 chr1 1295887 1295887 rs533071465 0 + - - -/GGGGGGC genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,GGGGGGC, 868.000000,4140.000000, 0.173323,0.826677, 594 chr1 1295981 1295982 rs145327736 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 594 chr1 1296254 1296255 rs370716566 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4946.000000,62.000000, 0.987620,0.012380, 594 chr1 1296255 1296267 rs560295906 0 + AGACACACATGG AGACACACATGG -/AGACACACATGG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,AGACACACATGG, 86.000000,4922.000000, 0.017173,0.982827, 594 chr1 1296283 1296285 rs549102424 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,AC, 447.000000,4561.000000, 0.089257,0.910743, 594 chr1 1296363 1296365 rs202221968 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,GMI, 2 -,AC, 460.000000,4548.000000, 0.091853,0.908147, 594 chr1 1296395 1296397 rs200946255 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,AC, 69.000000,4939.000000, 0.013778,0.986222, 594 chr1 1296403 1296404 rs111352671 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, 594 chr1 1296433 1296435 rs199723493 0 + AG AG -/AG genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,GMI,SSMP, 2 -,AG, 87.000000,4921.000000, 0.017372,0.982628, 594 chr1 1296610 1296611 rs113035485 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 142.000000,4866.000000, 0.028355,0.971645, 594 chr1 1296690 1296691 rs2765025 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 594 chr1 1296817 1296818 rs2765024 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1297215 1297216 rs2649611 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SC_JCM,SSMP,TISHKOFF, 2 A,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 594 chr1 1297227 1297227 rs199616947 0 + - - -/T genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4921.000000,87.000000, 0.982628,0.017372, 594 chr1 1297482 1297483 rs144372685 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 594 chr1 1297634 1297635 rs2649612 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, 594 chr1 1297697 1297698 rs112834298 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 594 chr1 1297722 1297723 rs2649613 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, 594 chr1 1297835 1297836 rs113215849 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 594 chr1 1297849 1297850 rs2765020 0 - A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1297894 1297895 rs112934253 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4619.000000,389.000000, 0.922324,0.077676, 594 chr1 1298168 1298169 rs79141536 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,ENSEMBL,GMI,PJP, 2 A,T, 925.000000,4083.000000, 0.184704,0.815296, 594 chr1 1298410 1298411 rs4970439 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 844.000000,4164.000000, 0.168530,0.831470, 594 chr1 1298461 1298462 rs200811419 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 -,A, 724.000000,4284.000000, 0.144569,0.855431, 594 chr1 1298532 1298533 rs4596826 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3632.000000,1376.000000, 0.725240,0.274760, 594 chr1 1298536 1298537 rs2477784 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 843.000000,4165.000000, 0.168331,0.831669, 594 chr1 1298837 1298838 rs113740540 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,MPI_MOLGEN, 2 C,G, 1427.000000,3581.000000, 0.284944,0.715056, 594 chr1 1298963 1298964 rs183716005 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 384.000000,4624.000000, 0.076677,0.923323, 594 chr1 1299040 1299041 rs189210276 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 594 chr1 1299105 1299106 rs150088315 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 594 chr1 1299128 1299129 rs2313197 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, 594 chr1 1299277 1299278 rs28821228 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2318.000000,2690.000000, 0.462859,0.537141, 594 chr1 1299365 1299366 rs28368296 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 2317.000000,2691.000000, 0.462660,0.537340, 594 chr1 1299484 1299486 rs542433833 0 + TG TG -/TG genomic deletion unknown 0 0 near-gene-5 range 1 1 1000GENOMES, 2 -,TG, 2032.000000,2976.000000, 0.405751,0.594249, 594 chr1 1299570 1299571 rs144026922 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 594 chr1 1299602 1299603 rs4970440 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 438.000000,4570.000000, 0.087460,0.912540, 594 chr1 1299632 1299633 rs34734423 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1299712 1299713 rs150822803 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1299736 1299737 rs2313198 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2931.000000,2077.000000, 0.585264,0.414736, 594 chr1 1300302 1300303 rs148192735 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 594 chr1 1300346 1300347 rs140119160 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 594 chr1 1300416 1300416 rs561031858 0 + - - -/AA genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,AA, 3642.000000,1366.000000, 0.727236,0.272764, 594 chr1 1300539 1300540 rs28890279 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2931.000000,2077.000000, 0.585264,0.414736, 594 chr1 1300577 1300578 rs28503348 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2931.000000,2077.000000, 0.585264,0.414736, 594 chr1 1300893 1300894 rs2985899 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 A,C, 4759.000000,249.000000, 0.950280,0.049720, 594 chr1 1300945 1300946 rs2936661 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 2680.000000,2328.000000, 0.535144,0.464856, 594 chr1 1301387 1301388 rs71628956 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 3119.000000,1889.000000, 0.622804,0.377196, 594 chr1 1301412 1301416 rs532006009 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TGTG, 420.000000,4588.000000, 0.083866,0.916134, 594 chr1 1301441 1301442 rs76662808 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1884.000000,3124.000000, 0.376198,0.623802, 594 chr1 1301503 1301504 rs111932281 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4884.000000,124.000000, 0.975240,0.024760, 594 chr1 1301525 1301530 rs201440847 0 + GTGAA GTGAA -/GTGAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,SSMP, 2 -,GTGAA, 1176.000000,3832.000000, 0.234824,0.765176, 594 chr1 1301563 1301565 rs199546086 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,EVA-GONL, 2 -,GA, 89.000000,4919.000000, 0.017772,0.982228, 594 chr1 1301567 1301567 rs113434969 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 -,GT, 4153.000000,855.000000, 0.829273,0.170727, 594 chr1 1301641 1301642 rs146482883 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 594 chr1 1301651 1301653 rs569873087 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GT, 324.000000,4684.000000, 0.064696,0.935304, 594 chr1 1301679 1301681 rs558620518 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GT, 360.000000,4648.000000, 0.071885,0.928115, 594 chr1 1301807 1301823 rs150215528 0 + GTGTGATTGAATGAGT GTGTGATTGAATGAGT -/GTGTGATTGAATGAGT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,GTGTGATTGAATGAGT, 2655.000000,2353.000000, 0.530152,0.469848, 594 chr1 1301941 1301943 rs138889336 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,BL,GMI,LUNTER,SSMP, 2 -,GT, 2082.000000,2926.000000, 0.415735,0.584265, 594 chr1 1301980 1301981 rs148814621 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1302105 1302106 rs72896260 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 1778.000000,3230.000000, 0.355032,0.644968, 594 chr1 1302209 1302210 rs75051470 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, 594 chr1 1302331 1302331 rs372275891 0 + - - -/AT/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,TISHKOFF, 3 -,AT,GT, 273.000000,37.000000,4698.000000, 0.054513,0.007388,0.938099, 594 chr1 1302407 1302408 rs61766242 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, 594 chr1 1302535 1302536 rs201273633 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 3550.000000,1458.000000, 0.708866,0.291134, 594 chr1 1302637 1302638 rs113375648 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI, 2 A,T, 1900.000000,3108.000000, 0.379393,0.620607, 594 chr1 1302648 1302650 rs367838598 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,GA, 1614.000000,3394.000000, 0.322284,0.677716, 594 chr1 1302659 1302660 rs113127973 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 1746.000000,3262.000000, 0.348642,0.651358, 594 chr1 1302678 1302679 rs201602507 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 3308.000000,1700.000000, 0.660543,0.339457, 594 chr1 1302679 1302680 rs202225152 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 1698.000000,3310.000000, 0.339058,0.660942, 594 chr1 1302709 1302709 rs138283838 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,GT, 3296.000000,1712.000000, 0.658147,0.341853, 594 chr1 1302753 1302753 rs78389809 0 + - - -/GTG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,GTG, 3272.000000,1736.000000, 0.653355,0.346645, 594 chr1 1302768 1302768 rs536994186 0 + - - -/TGG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,TGG, 3169.000000,1839.000000, 0.632788,0.367212, 594 chr1 1302841 1302842 rs78275249 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,TISHKOFF, 2 C,T, 2042.000000,2966.000000, 0.407748,0.592252, 594 chr1 1302877 1302878 rs149550876 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, 594 chr1 1302972 1302973 rs72896264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,TISHKOFF, 2 A,G, 2060.000000,2948.000000, 0.411342,0.588658, 594 chr1 1302986 1302987 rs537166609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 1462.000000,3546.000000, 0.291933,0.708067, 594 chr1 1302994 1302995 rs76022438 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 3434.000000,1574.000000, 0.685703,0.314297, 594 chr1 1303050 1303054 rs77428272 0 + GTGA GTGA -/GTGA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 -,GTGA, 2062.000000,2946.000000, 0.411741,0.588259, 594 chr1 1303102 1303106 rs201555063 0 + TTTA TTTA -/TTTA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,TTTA, 2073.000000,2935.000000, 0.413938,0.586062, 594 chr1 1303253 1303254 rs34316807 0 - A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1303344 1303345 rs75064234 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 2942.000000,2066.000000, 0.587460,0.412540, 594 chr1 1303349 1303350 rs77752170 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 G,T, 2066.000000,2942.000000, 0.412540,0.587460, 594 chr1 1303556 1303557 rs79471774 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI, 2 C,G, 2067.000000,2941.000000, 0.412740,0.587260, 594 chr1 1303893 1303894 rs35716478 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1304700 1304701 rs150231511 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 -,T, 2059.000000,2949.000000, 0.411142,0.588858, 594 chr1 1304935 1304936 rs4498744 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2947.000000,2061.000000, 0.588458,0.411542, 594 chr1 1305095 1305096 rs34953014 0 - G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1305183 1305183 rs570989366 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 3112.000000,1896.000000, 0.621406,0.378594, 594 chr1 1305560 1305561 rs17160669 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 2952.000000,2056.000000, 0.589457,0.410543, maf-5-some-pop 594 chr1 1305696 1305697 rs111421264 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 2056.000000,2952.000000, 0.410543,0.589457, 594 chr1 1305699 1305700 rs113429154 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 2952.000000,2056.000000, 0.589457,0.410543, 594 chr1 1305806 1305807 rs143644995 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, 594 chr1 1305808 1305809 rs112274320 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4613.000000,395.000000, 0.921126,0.078874, 594 chr1 1305963 1305964 rs34457386 0 - G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1306345 1306352 rs200422955 0 + CAGGCCC CAGGCCC -/CAGGCCC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CAGGCCC, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1306917 1306918 rs112607487 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, 594 chr1 1308090 1308091 rs111532869 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 153.000000,4855.000000, 0.030551,0.969449, 594 chr1 1308114 1308115 rs145983033 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1308284 1308286 rs201504239 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GA, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1308288 1308289 rs12408046 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1950.000000,3058.000000, 0.389377,0.610623, 594 chr1 1308330 1308331 rs141201251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 594 chr1 1308386 1308387 rs12408051 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 1940.000000,3068.000000, 0.387380,0.612620, 594 chr1 1308458 1308459 rs12091278 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 4675.000000,333.000000, 0.933506,0.066494, 594 chr1 1308627 1308628 rs2477775 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 231.000000,4777.000000, 0.046126,0.953874, 594 chr1 1308870 1308871 rs2649595 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1308961 1308962 rs113848969 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, 594 chr1 1309184 1309185 rs111933693 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 220.000000,4788.000000, 0.043930,0.956070, 594 chr1 1309404 1309405 rs150194697 0 + T T C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EVA-GONL,EXOME_CHIP,NHLBI-ESP,SSMP, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 594 chr1 1309457 1309458 rs8146 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,APPLERA_GI,BUSHMAN,CGAP-GAI,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, 594 chr1 1309556 1309557 rs3736374 0 - C C C/G genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1309941 1309942 rs11548463 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CGAP-GAI,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 594 chr1 1310073 1310074 rs2765035 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1310180 1310181 rs112533928 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 4318.000000,690.000000, 0.862220,0.137780, 594 chr1 1310667 1310668 rs2242398 0 - A A A/C/G/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 SingleClassQuadAllelic 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,YUSUKE, 4 A,C,G,T, 1302.000000,3706.000000,3706.000000,1302.000000, 0.129992,0.370008,0.370008,0.129992, maf-5-some-pop,maf-5-all-pops 595 chr1 1310768 1310769 rs146403839 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 595 chr1 1311052 1311053 rs540813109 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 -,G, 74.000000,4934.000000, 0.014776,0.985224, 595 chr1 1311167 1311168 rs147876340 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 392.000000,4616.000000, 0.078275,0.921725, 595 chr1 1311302 1311303 rs113237376 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4685.000000,323.000000, 0.935503,0.064497, 595 chr1 1311377 1311378 rs2477776 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3700.000000,1308.000000, 0.738818,0.261182, 595 chr1 1311404 1311405 rs111953393 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, 595 chr1 1311433 1311434 rs2765032 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1311532 1311533 rs2649590 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1311541 1311542 rs9730511 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1313340 1313341 rs145364433 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 595 chr1 1313488 1313489 rs112838388 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, 595 chr1 1313583 1313584 rs11489820 0 - G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1313929 1313930 rs144640318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, 595 chr1 1313970 1313971 rs112394535 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, 595 chr1 1314171 1314172 rs2477777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 983.000000,4025.000000, 0.196286,0.803714, maf-5-some-pop,maf-5-all-pops 595 chr1 1314463 1314464 rs70949583 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 -,T, 4715.000000,293.000000, 0.941494,0.058506, 595 chr1 1314467 1314468 rs570305855 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 330.000000,4678.000000, 0.065895,0.934105, 595 chr1 1315064 1315065 rs188670510 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, 595 chr1 1315274 1315275 rs70949584 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,BL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,A, 4687.000000,321.000000, 0.935903,0.064097, 595 chr1 1315422 1315423 rs140742799 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1315585 1315586 rs113457604 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, 595 chr1 1316121 1316122 rs74047249 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 68.000000,4940.000000, 0.013578,0.986422, 595 chr1 1316669 1316670 rs2765029 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1316886 1316887 rs4970443 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, 595 chr1 1317754 1317755 rs61767967 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 2847.000000,2161.000000, 0.568490,0.431510, 595 chr1 1317868 1317869 rs537520061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, 595 chr1 1317869 1317870 rs557397289 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4676.000000,332.000000, 0.933706,0.066294, 595 chr1 1317870 1317871 rs3118355 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,GMI,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1318115 1318116 rs113643701 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,GMI, 2 C,T, 2238.000000,2770.000000, 0.446885,0.553115, 595 chr1 1318209 1318220 rs568521422 0 + AACAATCCAGT AACAATCCAGT -/AACAATCCAGT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AACAATCCAGT, 324.000000,4684.000000, 0.064696,0.935304, 595 chr1 1318264 1318265 rs368836064 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4613.000000,395.000000, 0.921126,0.078874, 595 chr1 1318272 1318273 rs66559562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 1866.000000,3142.000000, 0.372604,0.627396, 595 chr1 1318350 1318351 rs2985898 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop 595 chr1 1318460 1318461 rs146284235 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1318463 1318464 rs369482566 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1319935 1319936 rs551011501 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 863.000000,4145.000000, 0.172324,0.827676, 595 chr1 1320104 1320105 rs138128469 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1320128 1320129 rs9727393 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1320407 1320408 rs142102173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 595 chr1 1320434 1320435 rs112613680 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, 595 chr1 1320615 1320616 rs112197711 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 595 chr1 1320763 1320764 rs4970444 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3981.000000,1027.000000, 0.794928,0.205072, 595 chr1 1321089 1321090 rs144993949 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, 595 chr1 1322210 1322211 rs199680791 0 + C C -/C genomic deletion unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 -,C, 143.000000,4865.000000, 0.028554,0.971446, 595 chr1 1322267 1322268 rs143567956 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1323029 1323030 rs146564472 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, 595 chr1 1323645 1323646 rs148937622 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 234.000000,4774.000000, 0.046725,0.953275, 595 chr1 1323945 1323945 rs574214305 0 + - - -/TC/TGTC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 3 -,TC,TGTC, 4765.000000,234.000000,9.000000, 0.951478,0.046725,0.001797, 595 chr1 1323946 1323947 rs149870149 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,GMI, 2 C,G, 4062.000000,946.000000, 0.811102,0.188898, 595 chr1 1323957 1323965 rs556548230 0 + TCTCTCTA TCTCTCTA -/TCTCTCTA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TCTCTCTA, 76.000000,4932.000000, 0.015176,0.984824, 595 chr1 1323960 1323961 rs200013239 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, 595 chr1 1323964 1323965 rs146981251 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 4423.000000,585.000000, 0.883187,0.116813, 595 chr1 1323966 1323967 rs544534576 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSIP, 2 A,C, 4706.000000,302.000000, 0.939696,0.060304, 595 chr1 1325156 1325157 rs113617566 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1325294 1325295 rs111353973 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 145.000000,4863.000000, 0.028954,0.971046, 595 chr1 1325493 1325494 rs546221507 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 -,A, 1856.000000,3152.000000, 0.370607,0.629393, 595 chr1 1325989 1325990 rs147017832 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 595 chr1 1327753 1327754 rs137906875 0 - G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1328970 1328971 rs11485864 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, 595 chr1 1329331 1329332 rs144707149 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 595 chr1 1329894 1329895 rs111635400 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, 595 chr1 1330017 1330018 rs142365476 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 595 chr1 1330290 1330291 rs377333233 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1330425 1330426 rs145279159 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 595 chr1 1330429 1330430 rs113548627 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1023.000000,3985.000000, 0.204273,0.795727, 595 chr1 1330725 1330726 rs1240746 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1597.000000,3411.000000, 0.318890,0.681110, 595 chr1 1330958 1330959 rs113459307 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, 595 chr1 1331065 1331066 rs113248305 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, 595 chr1 1331832 1331833 rs139373344 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4867.000000,141.000000, 0.971845,0.028155, 595 chr1 1331865 1331866 rs150005823 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, 595 chr1 1331936 1331937 rs116584203 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 595 chr1 1332111 1332112 rs11488469 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 A,G, 4581.000000,427.000000, 0.914736,0.085264, 595 chr1 1332136 1332137 rs532056593 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4938.000000,70.000000, 0.986022,0.013978, 595 chr1 1332451 1332452 rs111376007 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, 595 chr1 1332948 1332949 rs140331512 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 595 chr1 1333119 1333120 rs1240744 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1334052 1334057 rs3831366 0 + TAGAG TAGAG -/TAGAG genomic deletion unknown 0 0 near-gene-5,splice-3 range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,YUSUKE, 2 -,TAGAG, 371.000000,4637.000000, 0.074082,0.925919, 595 chr1 1334474 1334475 rs17851391 0 + G G C/G genomic single unknown 0 0 near-gene-5,ncRNA,missense,untranslated-5 exact 1 10 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,SEATTLESEQ, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 595 chr1 1334699 1334700 rs112789149 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1335217 1335218 rs2291889 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 595 chr1 1335301 1335302 rs1240707 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop 595 chr1 1335789 1335790 rs1240708 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop 595 chr1 1336005 1336006 rs111876693 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 595 chr1 1336477 1336478 rs113869112 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 595 chr1 1336481 1336482 rs140894412 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 421.000000,4587.000000, 0.084065,0.915935, 595 chr1 1336625 1336626 rs112501033 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 595 chr1 1336677 1336678 rs17139966 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 595 chr1 1336701 1336702 rs150475815 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 595 chr1 1337219 1337220 rs139295104 0 + G G A/G genomic single unknown 0 0 near-gene-3,ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, 595 chr1 1337333 1337334 rs1171 0 + G G G/T genomic single unknown 0 0 near-gene-3,ncRNA,untranslated-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,LEE,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WIAF, 2 G,T, 3151.000000,1857.000000, 0.629193,0.370807, maf-5-some-pop 595 chr1 1338279 1338280 rs112491004 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3997.000000,1011.000000, 0.798123,0.201877, 595 chr1 1338323 1338324 rs146480127 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, 595 chr1 1338507 1338507 rs552220312 0 + - - -/AAAAAA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AAAAAA, 4642.000000,366.000000, 0.926917,0.073083, 595 chr1 1338595 1338596 rs17160975 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 595 chr1 1338972 1338973 rs17363048 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3150.000000,1858.000000, 0.628994,0.371006, maf-5-some-pop,maf-5-all-pops 595 chr1 1339287 1339288 rs35299041 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1339464 1339465 rs113272711 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, 595 chr1 1339514 1339515 rs138217691 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 595 chr1 1339608 1339609 rs112610278 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, 595 chr1 1339723 1339724 rs144228847 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 595 chr1 1339726 1339727 rs148311129 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4587.000000,421.000000, 0.915935,0.084065, 595 chr1 1340210 1340211 rs139904601 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1340240 1340241 rs143379804 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, 595 chr1 1340284 1340295 rs201938505 0 + GTGCAGCTACG GTGCAGCTACG -/GTGCAGCTACG genomic deletion unknown 0 0 intron,near-gene-3 range 1 2 1000GENOMES,EVA-GONL, 2 -,GTGCAGCTACG, 269.000000,4739.000000, 0.053714,0.946286, 595 chr1 1340445 1340446 rs150734846 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1340695 1340696 rs4970446 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1011.000000,3997.000000, 0.201877,0.798123, 595 chr1 1341184 1341185 rs17160977 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 A,G, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 595 chr1 1341510 1341511 rs112062737 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, 595 chr1 1342085 1342086 rs527501877 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 160.000000,4848.000000, 0.031949,0.968051, 595 chr1 1342268 1342269 rs536111712 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 488.000000,4520.000000, 0.097444,0.902556, 595 chr1 1342611 1342612 rs2275915 0 + G G C/G genomic single unknown 0 0 untranslated-5 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SEQUENOM,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 2155.000000,2853.000000, 0.430312,0.569688, 595 chr1 1342944 1342945 rs34442823 0 - C C A/C/G/T genomic single unknown 0 0 near-gene-5 exact 1 SingleClassQuadAllelic 6 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI, 4 A,C,G,T, 1830.000000,3178.000000,3178.000000,1830.000000, 0.182708,0.317292,0.317292,0.182708, 595 chr1 1343134 1343135 rs141894431 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 285.000000,4723.000000, 0.056909,0.943091, 595 chr1 1343665 1343666 rs28418680 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1028.000000,3980.000000, 0.205272,0.794728, 595 chr1 1343827 1343828 rs140270653 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 595 chr1 1344066 1344067 rs1240712 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop 595 chr1 1344189 1344190 rs112494646 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1344410 1344411 rs150073991 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 595 chr1 1344481 1344482 rs145326937 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4585.000000,423.000000, 0.915535,0.084465, 595 chr1 1344538 1344539 rs149195720 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4583.000000,425.000000, 0.915136,0.084864, 595 chr1 1344588 1344589 rs143274502 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4909.000000,99.000000, 0.980232,0.019768, 595 chr1 1344685 1344686 rs112301494 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3974.000000,1034.000000, 0.793530,0.206470, 595 chr1 1345002 1345003 rs1240713 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1158.000000,3850.000000, 0.231230,0.768770, 595 chr1 1345226 1345227 rs112160869 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 G,T, 4554.000000,454.000000, 0.909345,0.090655, 595 chr1 1345421 1345422 rs546451712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, 595 chr1 1345474 1345475 rs532205999 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4920.000000,88.000000, 0.982428,0.017572, 595 chr1 1345479 1345480 rs552379133 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 86.000000,4922.000000, 0.017173,0.982827, 595 chr1 1345494 1345495 rs147351788 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 500.000000,4508.000000, 0.099840,0.900160, 595 chr1 1345562 1345563 rs369543636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 595 chr1 1345830 1345831 rs562671994 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1345895 1345896 rs139832200 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 595 chr1 1345969 1345970 rs28756423 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 3811.000000,1197.000000, 0.760982,0.239018, 595 chr1 1345995 1345996 rs1240716 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,KWOK,SC_JCM,SSMP, 2 G,T, 3474.000000,1534.000000, 0.693690,0.306310, 595 chr1 1346256 1346257 rs1240717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3430.000000,1578.000000, 0.684904,0.315096, 595 chr1 1346575 1346576 rs113066461 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4667.000000,341.000000, 0.931909,0.068091, 595 chr1 1346702 1346703 rs1240718 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1573.000000,3435.000000, 0.314097,0.685903, 595 chr1 1346904 1346905 rs1240719 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1480.000000,3528.000000, 0.295527,0.704473, 595 chr1 1346971 1346972 rs141714940 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 C,G, 525.000000,4483.000000, 0.104832,0.895168, 595 chr1 1347037 1347038 rs138875590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 595 chr1 1347114 1347116 rs112190084 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BUSHMAN, 2 -,AT, 89.000000,4919.000000, 0.017772,0.982228, 595 chr1 1347234 1347234 rs562953094 0 + - - -/CCAGGTC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CCAGGTC, 4708.000000,300.000000, 0.940096,0.059904, 595 chr1 1347308 1347309 rs1240720 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SSMP,TISHKOFF, 2 C,G, 1480.000000,3528.000000, 0.295527,0.704473, 595 chr1 1347332 1347333 rs113574359 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 134.000000,4874.000000, 0.026757,0.973243, 595 chr1 1347462 1347463 rs146839906 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 697.000000,4311.000000, 0.139177,0.860823, 595 chr1 1347558 1347559 rs112458609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, 595 chr1 1347868 1347868 rs113466973 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,GMI, 2 -,AG, 3536.000000,1472.000000, 0.706070,0.293930, 595 chr1 1348002 1348003 rs191430682 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 4737.000000,271.000000, 0.945887,0.054113, 595 chr1 1348179 1348183 rs200218382 0 + GATT GATT -/GATT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GATT, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1348284 1348291 rs560252765 0 + AGCAGTA AGCAGTA -/AGCAGTA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AGCAGTA, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1348312 1348318 rs201284556 0 + TTACTC TTACTC -/TTACTC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTACTC, 87.000000,4921.000000, 0.017372,0.982628, 595 chr1 1348785 1348786 rs112328758 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, 595 chr1 1348991 1348992 rs201854619 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 -,T, 232.000000,4776.000000, 0.046326,0.953674, 595 chr1 1349132 1349133 rs146944885 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4879.000000,129.000000, 0.974241,0.025759, 595 chr1 1350238 1350239 rs1240721 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 595 chr1 1350390 1350391 rs112401380 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3857.000000,1151.000000, 0.770168,0.229832, 595 chr1 1350600 1350601 rs34817085 0 - G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1164.000000,3844.000000,3844.000000,1164.000000, 0.116214,0.383786,0.383786,0.116214, 595 chr1 1350752 1350753 rs151242580 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1350764 1350765 rs146584313 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1149.000000,3859.000000, 0.229433,0.770567, 595 chr1 1350934 1350935 rs112952079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 595 chr1 1351038 1351039 rs141289858 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1147.000000,3861.000000, 0.229034,0.770966, 595 chr1 1351134 1351138 rs200282760 0 + CGCT CGCT -/CGCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CGCT, 1093.000000,3915.000000, 0.218251,0.781749, 595 chr1 1351142 1351148 rs201508233 0 + TCCGCT TCCGCT -/TCCGCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCCGCT, 1094.000000,3914.000000, 0.218450,0.781550, 595 chr1 1351171 1351172 rs143096394 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,T, 4608.000000,400.000000, 0.920128,0.079872, 595 chr1 1351355 1351356 rs112581014 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1474.000000,3534.000000, 0.294329,0.705671, 595 chr1 1352127 1352128 rs142171871 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 -,T, 1147.000000,3861.000000, 0.229034,0.770966, 595 chr1 1352379 1352380 rs146864254 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,PJP,SSMP, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, 595 chr1 1352410 1352411 rs12354306 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,PJP,SC_SNP,SSMP, 2 A,G, 3865.000000,1143.000000, 0.771765,0.228235, 595 chr1 1352425 1352426 rs111772342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, 595 chr1 1352502 1352503 rs150666652 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4909.000000,99.000000, 0.980232,0.019768, 595 chr1 1352719 1352720 rs111952219 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, 595 chr1 1352942 1352943 rs4970373 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,G, 177.000000,4831.000000, 0.035344,0.964656, 595 chr1 1353048 1353049 rs145355043 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1353379 1353380 rs11488462 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1174.000000,3834.000000, 0.234425,0.765575, maf-5-some-pop,maf-5-all-pops 595 chr1 1353560 1353561 rs4970447 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3854.000000,1154.000000, 0.769569,0.230431, 595 chr1 1353590 1353591 rs111436371 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4919.000000,89.000000, 0.982228,0.017772, 595 chr1 1353600 1353601 rs78991109 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 595 chr1 1353602 1353603 rs4970448 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3834.000000,1174.000000, 0.765575,0.234425, 595 chr1 1353631 1353632 rs4970449 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3834.000000,1174.000000, 0.765575,0.234425, 595 chr1 1353841 1353842 rs112936646 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 595 chr1 1354059 1354060 rs143038747 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, 595 chr1 1354550 1354551 rs3766166 0 - C C A/C/G/T genomic single unknown 0 0 missense,untranslated-3 exact 1 SingleClassQuadAllelic 3 1000GENOMES,GMI,YUSUKE, 4 A,C,G,T, 7.000000,5001.000000,5001.000000,7.000000, 0.000699,0.499301,0.499301,0.000699, 595 chr1 1354919 1354920 rs145112172 0 + C C A/C genomic single unknown 0 0 missense,untranslated-3 exact 1 2 1000GENOMES,EXOME_CHIP, 2 A,C, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1355019 1355020 rs190884669 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1355159 1355160 rs11488463 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 324.000000,4684.000000, 0.064696,0.935304, 595 chr1 1355445 1355446 rs183348359 0 + G G A/G genomic single unknown 0 0 coding-synon,intron exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1355582 1355583 rs1781133 0 + C C A/C genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,BCM_SSAHASNP,SC_JCM,SSAHASNP, 2 A,C, 1163.000000,3845.000000, 0.232228,0.767772, 595 chr1 1355795 1355796 rs145378993 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 1 1000GENOMES, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, 595 chr1 1356549 1356550 rs12089560 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 12 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3634.000000,1374.000000, 0.725639,0.274361, maf-5-some-pop,maf-5-all-pops 595 chr1 1356879 1356880 rs35428595 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ABI,ENSEMBL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1357193 1357194 rs113283213 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 655.000000,4353.000000, 0.130791,0.869209, 595 chr1 1357460 1357461 rs1781134 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, 595 chr1 1357659 1357660 rs112321355 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4600.000000,408.000000, 0.918530,0.081470, 595 chr1 1357664 1357665 rs3893396 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1357758 1357759 rs111858202 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 383.000000,4625.000000, 0.076478,0.923522, 595 chr1 1357992 1357993 rs113336054 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 4844.000000,164.000000, 0.967252,0.032748, 595 chr1 1358570 1358571 rs1781135 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 864.000000,4144.000000, 0.172524,0.827476, 595 chr1 1358772 1358773 rs142557804 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 C,T, 4633.000000,375.000000, 0.925120,0.074880, 595 chr1 1359141 1359144 rs200966758 0 + CAT CAT -/CAT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,CAT, 771.000000,4237.000000, 0.153954,0.846046, 595 chr1 1359350 1359351 rs148094917 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4633.000000,375.000000, 0.925120,0.074880, 595 chr1 1359599 1359600 rs1781136 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 4160.000000,848.000000, 0.830671,0.169329, 595 chr1 1359735 1359736 rs112398884 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, 595 chr1 1359838 1359839 rs145957184 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, 595 chr1 1360104 1360105 rs4970450 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 595 chr1 1360156 1360157 rs145451682 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,T, 259.000000,4749.000000, 0.051717,0.948283, 595 chr1 1360198 1360199 rs112333621 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4524.000000,484.000000, 0.903355,0.096645, 595 chr1 1360279 1360280 rs142493165 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 280.000000,4728.000000, 0.055911,0.944089, 595 chr1 1360474 1360475 rs111642782 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 4625.000000,383.000000, 0.923522,0.076478, 595 chr1 1360514 1360515 rs112030392 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 635.000000,4373.000000, 0.126797,0.873203, 595 chr1 1361001 1361002 rs141184576 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, 595 chr1 1361012 1361013 rs150750434 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 4815.000000,193.000000, 0.961462,0.038538, 595 chr1 1361129 1361130 rs138985554 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 572.000000,4436.000000, 0.114217,0.885783, 595 chr1 1361201 1361202 rs145035575 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF,WARNICH_LAB, 2 C,G, 4466.000000,542.000000, 0.891773,0.108227, 595 chr1 1361315 1361316 rs74047250 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, 595 chr1 1361363 1361364 rs141020511 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, 595 chr1 1361529 1361530 rs144957058 0 + C C C/T genomic single unknown 0 0 missense exact 1 6 1000GENOMES,EVA-GONL,EXOME_CHIP,LIMM_JT,NHLBI-ESP,SSMP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 595 chr1 1361543 1361544 rs145806019 0 + G G A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 595 chr1 1361632 1361633 rs12022947 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SC_SNP,SSMP, 2 A,G, 2003.000000,3005.000000, 0.399960,0.600040, maf-5-some-pop,maf-5-all-pops 595 chr1 1361640 1361641 rs12030806 0 + C C C/T genomic single unknown 0 0 missense exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,SC_SNP,SSMP, 2 C,T, 1596.000000,3412.000000, 0.318690,0.681310, maf-5-some-pop 595 chr1 1361735 1361736 rs72896277 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 595 chr1 1361886 1361887 rs111752513 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 595 chr1 1361959 1361960 rs111226832 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 595 chr1 1362150 1362151 rs11800029 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 563.000000,4445.000000, 0.112420,0.887580, 595 chr1 1362189 1362190 rs1781137 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,G, 1592.000000,3416.000000, 0.317891,0.682109, maf-5-some-pop,maf-5-all-pops 595 chr1 1362286 1362287 rs141177577 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 595 chr1 1362340 1362341 rs144977734 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, 595 chr1 1362372 1362373 rs184902754 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 595 chr1 1362389 1362390 rs138827928 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 595 chr1 1362408 1362409 rs142648178 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, 595 chr1 1362459 1362460 rs144899239 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4441.000000,567.000000, 0.886781,0.113219, 595 chr1 1362547 1362548 rs553622547 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 595 chr1 1363371 1363372 rs567928487 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 595 chr1 1363374 1363375 rs113373846 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 595 chr1 1363552 1363567 rs561627653 0 + GAGAGGGGAGGGGAA GAGAGGGGAGGGGAA -/GAGAGGGGAGGGGAA genomic deletion unknown 0 0 near-gene-3 range 1 1 1000GENOMES, 2 -,GAGAGGGGAGGGGAA, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1363606 1363607 rs114943237 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,maf-5-all-pops 595 chr1 1363806 1363807 rs112477683 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1363921 1363922 rs141286142 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, 595 chr1 1364118 1364119 rs140532922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1365002 1365003 rs143509573 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1365244 1365245 rs112499089 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, 595 chr1 1365333 1365334 rs1781138 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 595 chr1 1365399 1365400 rs148583732 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 124.000000,4884.000000, 0.024760,0.975240, 595 chr1 1365758 1365759 rs143000156 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, 595 chr1 1366258 1366258 rs568920459 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4954.000000,54.000000, 0.989217,0.010783, 595 chr1 1366273 1366274 rs111605018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1366393 1366394 rs2004444 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 2625.000000,2383.000000, 0.524161,0.475839, 595 chr1 1366406 1366414 rs533051276 0 + CACCCCCT CACCCCCT -/CACCCCCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CACCCCCT, 3594.000000,1414.000000, 0.717652,0.282348, 595 chr1 1366432 1366433 rs553699392 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 595 chr1 1366617 1366618 rs143665416 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1366643 1366644 rs185605572 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1366838 1366839 rs140465564 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1366916 1366917 rs873926 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1367598 1367599 rs138733159 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 595 chr1 1367698 1367699 rs11485863 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, 595 chr1 1367747 1367749 rs201934299 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,CT, 122.000000,4886.000000, 0.024361,0.975639, 595 chr1 1368059 1368060 rs144402554 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 595 chr1 1368063 1368065 rs200098379 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1368437 1368438 rs146375553 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4677.000000,331.000000, 0.933906,0.066094, 595 chr1 1368439 1368440 rs139615235 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 331.000000,4677.000000, 0.066094,0.933906, 595 chr1 1368529 1368530 rs140945431 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 595 chr1 1368646 1368647 rs1240702 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1368753 1368754 rs1240701 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3474.000000,1534.000000, 0.693690,0.306310, maf-5-some-pop,maf-5-all-pops 595 chr1 1368869 1368870 rs145934101 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 101.000000,4907.000000, 0.020168,0.979832, 595 chr1 1369622 1369623 rs115503338 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1370066 1370067 rs76731745 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 2947.000000,2061.000000, 0.588458,0.411542, 595 chr1 1371325 1371325 rs545530340 0 + - - -/CGGGCGGGGGCG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CGGGCGGGGGCG, 3497.000000,1511.000000, 0.698283,0.301717, 595 chr1 1371440 1371441 rs199850075 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,G, 279.000000,4729.000000, 0.055711,0.944289, 595 chr1 1373334 1373335 rs3843248 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1373481 1373482 rs3845296 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1373566 1373567 rs145904956 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 99.000000,4909.000000, 0.019768,0.980232, 595 chr1 1373677 1373678 rs148133216 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, 595 chr1 1374271 1374272 rs142611683 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 595 chr1 1374751 1374752 rs201042102 0 + C C C/T genomic single unknown 0 0 missense,untranslated-3 exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 595 chr1 1374804 1374805 rs2275916 0 + G G C/G genomic single unknown 0 0 missense,untranslated-3 exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,SSAHASNP,SSMP,YUSUKE, 2 C,G, 312.000000,4696.000000, 0.062300,0.937700, 595 chr1 1374833 1374834 rs1892289 0 + A A A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 1654.000000,3354.000000, 0.330272,0.669728, maf-5-some-pop,maf-5-all-pops 595 chr1 1375061 1375062 rs570955388 0 + C C C/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 1 1000GENOMES, 2 C,G, 4930.000000,78.000000, 0.984425,0.015575, 595 chr1 1375184 1375185 rs1240699 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SEQUENOM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1375206 1375207 rs140247431 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 394.000000,4614.000000, 0.078674,0.921326, 595 chr1 1375809 1375810 rs4590 0 - C C C/G genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,LEE,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,UWGC, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1375946 1375947 rs13683 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 340.000000,4668.000000, 0.067891,0.932109, 595 chr1 1376066 1376067 rs3087902 0 - C C A/G cDNA single by-frequency 0.2688 0.249292 untranslated-3 exact 1 NonIntegerChromCount 3 CGAP-GAI,LEE,SEQUENOM, 2 A,G, 29.440001,154.559998, 0.160000,0.840000, maf-5-some-pop,maf-5-all-pops 595 chr1 1376213 1376214 rs1240698 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1568.000000,3440.000000, 0.313099,0.686901, maf-5-some-pop,maf-5-all-pops 595 chr1 1376394 1376395 rs188166714 0 + A A A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 595 chr1 1376557 1376558 rs148358435 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1377041 1377042 rs143842661 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1377431 1377432 rs143242116 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1377440 1377441 rs146696794 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 595 chr1 1377534 1377535 rs78727284 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 338.000000,4670.000000, 0.067492,0.932508, 595 chr1 1377798 1377799 rs150280246 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 595 chr1 1377996 1377997 rs147051399 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1378007 1378008 rs188333330 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 595 chr1 1378101 1378102 rs112270823 0 + A A A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4228.000000,780.000000, 0.844249,0.155751, 595 chr1 1378313 1378318 rs112509410 0 + TTTTC TTTTC -/TTTTC genomic deletion unknown 0 0 intron,near-gene-3 range 1 2 1000GENOMES,BUSHMAN, 2 -,TTTTC, 66.000000,4942.000000, 0.013179,0.986821, 595 chr1 1378662 1378663 rs139196948 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 595 chr1 1378942 1378943 rs142431408 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 595 chr1 1378999 1379000 rs147959152 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 353.000000,4655.000000, 0.070487,0.929513, 595 chr1 1379021 1379022 rs202222016 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 -,G, 355.000000,4653.000000, 0.070887,0.929113, 595 chr1 1379498 1379499 rs78710859 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4649.000000,359.000000, 0.928315,0.071685, 595 chr1 1380060 1380061 rs138755169 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 333.000000,4675.000000, 0.066494,0.933506, 595 chr1 1380079 1380080 rs4066618 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,TSC-CSHL, 2 A,G, 4789.000000,219.000000, 0.956270,0.043730, 595 chr1 1380103 1380104 rs372588274 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1380434 1380435 rs146236747 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 1488.000000,3520.000000, 0.297125,0.702875, 595 chr1 1380613 1380614 rs1153093 0 - C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,KWOK,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1382530 1382531 rs189763155 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 595 chr1 1382537 1382538 rs192749661 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 595 chr1 1383586 1383587 rs147709992 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, 595 chr1 1383916 1383917 rs149196920 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 595 chr1 1384006 1384007 rs11488464 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, 595 chr1 1384145 1384146 rs137994401 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 595 chr1 1384294 1384295 rs11485865 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3008.000000,2000.000000, 0.600639,0.399361, 595 chr1 1384388 1384389 rs11485866 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1986.000000,3022.000000, 0.396565,0.603435, 595 chr1 1384428 1384429 rs139469422 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 355.000000,4653.000000, 0.070887,0.929113, 595 chr1 1384549 1384550 rs113590428 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, 595 chr1 1384606 1384608 rs201648114 0 + CT CT -/CT genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,TISHKOFF, 2 -,CT, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1384639 1384643 rs200758874 0 + TCTC TCTC -/TCTC genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,TCTC, 226.000000,4782.000000, 0.045128,0.954872, 595 chr1 1384656 1384660 rs567229053 0 + CTCT CTCT -/CTCT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,CTCT, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1384659 1384660 rs200568204 0 + T T -/T genomic deletion unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 -,T, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1384706 1384710 rs201116686 0 + TCTT TCTT -/TCTT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,TCTT, 88.000000,4920.000000, 0.017572,0.982428, 595 chr1 1385210 1385211 rs1312568 0 + A A A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP, 2 A,G, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 595 chr1 1385572 1385573 rs1240588 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3410.000000,1598.000000, 0.680911,0.319089, 595 chr1 1385672 1385673 rs150134027 0 + C C A/C genomic single unknown 0 0 intron,untranslated-5 exact 1 1 1000GENOMES, 2 A,C, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1385702 1385704 rs538836491 0 + AA AA -/AA genomic deletion unknown 0 0 intron,untranslated-5 range 1 1 1000GENOMES, 2 -,AA, 3490.000000,1518.000000, 0.696885,0.303115, 595 chr1 1386088 1386089 rs149262155 0 + C C C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 595 chr1 1386159 1386160 rs11488700 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 595 chr1 1386195 1386196 rs113446678 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 595 chr1 1386407 1386408 rs34568062 0 - T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1386577 1386578 rs142472854 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 282.000000,4726.000000, 0.056310,0.943690, 595 chr1 1386929 1386930 rs150873804 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, 595 chr1 1387105 1387106 rs3845297 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3888.000000,1120.000000, 0.776358,0.223642, maf-5-some-pop,maf-5-all-pops 595 chr1 1387117 1387118 rs3845298 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4009.000000,999.000000, 0.800519,0.199481, 595 chr1 1387166 1387167 rs1695859 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1846.000000,3162.000000, 0.368610,0.631390, maf-5-some-pop,maf-5-all-pops 595 chr1 1387169 1387170 rs112484029 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, 595 chr1 1387212 1387213 rs3899060 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 752.000000,4256.000000, 0.150160,0.849840, maf-5-some-pop,maf-5-all-pops 595 chr1 1387261 1387262 rs112013420 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, 595 chr1 1387281 1387282 rs113840210 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1387292 1387293 rs1781142 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 595 chr1 1387318 1387319 rs111805964 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1387347 1387348 rs1781143 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2939.000000,2069.000000, 0.586861,0.413139, 595 chr1 1387431 1387432 rs112072883 0 + G G C/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1387666 1387667 rs1781144 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 0.000000,5008.000000, 0.000000,1.000000, 595 chr1 1387725 1387726 rs9793066 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3553.000000,1455.000000, 0.709465,0.290535, 595 chr1 1387746 1387747 rs113110734 0 + C C C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 595 chr1 1387763 1387764 rs9793256 0 + G G A/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1402.000000,3606.000000, 0.279952,0.720048, 595 chr1 1387890 1387891 rs1624483 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1605.000000,3403.000000, 0.320487,0.679513, 595 chr1 1387919 1387920 rs1625156 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1973.000000,3035.000000, 0.393970,0.606030, 595 chr1 1388177 1388179 rs542674195 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AA, 3348.000000,1660.000000, 0.668530,0.331470, 595 chr1 1388191 1388192 rs75314576 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,G, 1381.000000,3627.000000, 0.275759,0.724241, 595 chr1 1388205 1388208 rs201870532 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,AAG, 3348.000000,1660.000000, 0.668530,0.331470, 595 chr1 1388267 1388268 rs1627833 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3400.000000,1608.000000, 0.678914,0.321086, maf-5-some-pop 595 chr1 1388288 1388289 rs1781145 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1606.000000,3402.000000, 0.320687,0.679313, maf-5-some-pop 595 chr1 1388931 1388932 rs1695860 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2143.000000,2865.000000, 0.427915,0.572085, 595 chr1 1389076 1389077 rs79705309 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3774.000000,1234.000000, 0.753594,0.246406, 595 chr1 1389082 1389083 rs1695861 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1606.000000,3402.000000, 0.320687,0.679313, 595 chr1 1389249 1389250 rs4970374 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3672.000000,1336.000000, 0.733227,0.266773, 595 chr1 1389340 1389341 rs74314585 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, 595 chr1 1389471 1389472 rs1695862 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1606.000000,3402.000000, 0.320687,0.679313, 595 chr1 1389773 1389774 rs182547232 0 + C C C/T genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 595 chr1 1389842 1389843 rs187191868 0 + G G A/G genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 595 chr1 1389885 1389886 rs112630825 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 595 chr1 1389916 1389917 rs377148167 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4955.000000,53.000000, 0.989417,0.010583, 595 chr1 1389958 1389959 rs368276632 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 1060.000000,3948.000000, 0.211661,0.788339, 595 chr1 1389960 1389961 rs562589112 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1060.000000,3948.000000, 0.211661,0.788339, 595 chr1 1389961 1389962 rs531606278 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 3948.000000,1060.000000, 0.788339,0.211661, 595 chr1 1389966 1389967 rs1695863 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SC_JCM, 2 C,T, 1060.000000,3948.000000, 0.211661,0.788339, 595 chr1 1389991 1389992 rs200487494 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 3813.000000,1195.000000, 0.761382,0.238618, 595 chr1 1390055 1390056 rs113156348 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF, 2 A,T, 1254.000000,3754.000000, 0.250399,0.749601, 595 chr1 1390144 1390145 rs112073382 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 4861.000000,147.000000, 0.970647,0.029353, 595 chr1 1390149 1390150 rs4970451 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, 595 chr1 1390170 1390171 rs113727072 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, 595 chr1 1390225 1390226 rs112357356 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 595 chr1 1390335 1390336 rs1695864 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_JCM,TISHKOFF, 2 G,T, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1390716 1390717 rs1695866 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2870.000000,2138.000000, 0.573083,0.426917, 595 chr1 1390874 1390875 rs1781147 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 2879.000000,2129.000000, 0.574880,0.425120, maf-5-some-pop,maf-5-all-pops 595 chr1 1390996 1390997 rs1781148 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP, 2 G,T, 3407.000000,1601.000000, 0.680312,0.319688, maf-5-some-pop,maf-5-all-pops 595 chr1 1391430 1391431 rs12090088 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,ILLUMINA-UK,SC_SNP,SSMP, 2 C,T, 2888.000000,2120.000000, 0.576677,0.423323, 595 chr1 1391447 1391448 rs542832631 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, 595 chr1 1391458 1391459 rs369694676 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,SSMP, 2 C,T, 2122.000000,2886.000000, 0.423722,0.576278, 595 chr1 1391533 1391534 rs78377693 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,PJP,SSMP, 2 A,G, 2126.000000,2882.000000, 0.424521,0.575479, 595 chr1 1391914 1391915 rs529713993 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 595 chr1 1391958 1391960 rs374627973 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AG, 163.000000,4845.000000, 0.032548,0.967452, 595 chr1 1392031 1392032 rs371585652 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, 595 chr1 1392208 1392209 rs2936660 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1392269 1392270 rs563341119 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4898.000000,110.000000, 0.978035,0.021965, 595 chr1 1392439 1392440 rs187077523 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, 595 chr1 1392450 1392451 rs1781149 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2796.000000,2212.000000, 0.558307,0.441693, 595 chr1 1392721 1392722 rs113946614 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4816.000000,192.000000, 0.961661,0.038339, 595 chr1 1392725 1392726 rs77814176 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1015.000000,3993.000000, 0.202676,0.797324, 595 chr1 1392792 1392793 rs112662693 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 193.000000,4815.000000, 0.038538,0.961462, 595 chr1 1393206 1393207 rs11485867 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 595 chr1 1393301 1393302 rs11488466 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1482.000000,3526.000000, 0.295927,0.704073, 595 chr1 1393302 1393303 rs112191029 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1393408 1393409 rs146413677 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1393714 1393715 rs139009917 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 595 chr1 1393715 1393716 rs11485868 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 595 chr1 1393762 1393763 rs1781151 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, 595 chr1 1393828 1393828 rs527390775 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3594.000000,1414.000000, 0.717652,0.282348, 595 chr1 1394110 1394110 rs549050293 0 + - - -/TT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TT, 3722.000000,1286.000000, 0.743211,0.256789, 595 chr1 1394201 1394202 rs143014491 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 595 chr1 1394240 1394241 rs541708806 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 595 chr1 1394387 1394388 rs144528634 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 4707.000000,301.000000, 0.939896,0.060104, 595 chr1 1394593 1394594 rs199523351 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1394626 1394627 rs190264554 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1394663 1394664 rs76548509 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 -,C, 1353.000000,3655.000000, 0.270168,0.729832, 595 chr1 1394736 1394737 rs75201061 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 1425.000000,3583.000000, 0.284545,0.715455, 595 chr1 1394749 1394750 rs140945924 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 595 chr1 1394770 1394771 rs78193071 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 3572.000000,1436.000000, 0.713259,0.286741, 595 chr1 1394813 1394814 rs181723185 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1394853 1394854 rs372776056 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 595 chr1 1394897 1394898 rs574149418 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 595 chr1 1395041 1395042 rs150487455 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 2877.000000,2131.000000, 0.574481,0.425519, 595 chr1 1395087 1395088 rs186230490 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 595 chr1 1395228 1395229 rs11488461 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1395338 1395339 rs11485859 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1395401 1395402 rs372710996 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 3046.000000,1962.000000, 0.608227,0.391773, 595 chr1 1395402 1395403 rs375327545 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,G, 3046.000000,1962.000000, 0.608227,0.391773, 595 chr1 1395403 1395404 rs369885742 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 1962.000000,3046.000000, 0.391773,0.608227, 595 chr1 1395749 1395750 rs78757391 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1429.000000,3579.000000, 0.285343,0.714657, 595 chr1 1396237 1396238 rs72896283 0 + G G G/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 G,T, 3715.000000,1293.000000, 0.741813,0.258187, 595 chr1 1396337 1396338 rs76815729 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 1280.000000,3728.000000, 0.255591,0.744409, 595 chr1 1396457 1396458 rs148408734 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, 595 chr1 1396662 1396663 rs72896285 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3702.000000,1306.000000, 0.739217,0.260783, 595 chr1 1396742 1396743 rs200584564 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 -,T, 1306.000000,3702.000000, 0.260783,0.739217, 595 chr1 1396875 1396876 rs77940961 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1147.000000,3861.000000, 0.229034,0.770966, 595 chr1 1397022 1397023 rs147067488 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 3714.000000,1294.000000, 0.741613,0.258387, 595 chr1 1397025 1397026 rs138115213 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1294.000000,3714.000000, 0.258387,0.741613, 595 chr1 1397027 1397028 rs372396535 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,EVA-GONL, 2 C,T, 3714.000000,1294.000000, 0.741613,0.258387, 595 chr1 1397029 1397030 rs375822550 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 1294.000000,3714.000000, 0.258387,0.741613, 595 chr1 1397032 1397033 rs113562564 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 1294.000000,3714.000000, 0.258387,0.741613, 595 chr1 1397098 1397099 rs28690531 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSAHASNP,SSMP, 2 A,G, 1340.000000,3668.000000, 0.267572,0.732428, 595 chr1 1397139 1397140 rs28697106 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,C, 1528.000000,3480.000000, 0.305112,0.694888, 595 chr1 1397146 1397147 rs28413040 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, 595 chr1 1397516 1397517 rs144921285 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 595 chr1 1397681 1397682 rs111356400 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 595 chr1 1397708 1397709 rs112186558 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 206.000000,4802.000000, 0.041134,0.958866, 595 chr1 1397896 1397897 rs147051071 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WARNICH_LAB, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1399016 1399017 rs150505938 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1399204 1399205 rs144877629 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 101.000000,4907.000000, 0.020168,0.979832, 595 chr1 1399296 1399296 rs201328971 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4878.000000,130.000000, 0.974042,0.025959, 595 chr1 1399436 1399437 rs11485869 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1399505 1399506 rs145367788 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 124.000000,4884.000000, 0.024760,0.975240, 595 chr1 1399616 1399617 rs142358585 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 595 chr1 1399699 1399700 rs11485860 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 595 chr1 1399810 1399821 rs199536789 0 + GGTGGTGAGCC GGTGGTGAGCC -/GGTGGTGAGCC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,GGTGGTGAGCC, 117.000000,4891.000000, 0.023363,0.976637, 595 chr1 1399815 1399816 rs11488468 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 133.000000,4875.000000, 0.026557,0.973442, 595 chr1 1400169 1400170 rs111938039 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, 595 chr1 1400698 1400699 rs147364442 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 595 chr1 1400741 1400742 rs1240723 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 595 chr1 1401380 1401381 rs111262777 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1401502 1401503 rs28888761 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1401835 1401836 rs577872672 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 127.000000,4881.000000, 0.025359,0.974641, 595 chr1 1402166 1402167 rs112916475 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1402217 1402218 rs113653667 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1402240 1402241 rs146032496 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 595 chr1 1402684 1402685 rs376024470 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 595 chr1 1402817 1402818 rs183579878 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 595 chr1 1402986 1402987 rs535218128 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1402988 1402989 rs558109931 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, 595 chr1 1403023 1403024 rs184304312 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 595 chr1 1403200 1403201 rs12058632 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSAHASNP,TISHKOFF, 2 A,C, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1403330 1403331 rs184147915 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 595 chr1 1403427 1403428 rs1240725 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,KWOK,SC_JCM,SEQUENOM,SSMP, 2 A,G, 2829.000000,2179.000000, 0.564896,0.435104, maf-5-some-pop,maf-5-all-pops 595 chr1 1403441 1403442 rs1240726 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SEQUENOM,SSMP, 2 A,T, 3484.000000,1524.000000, 0.695687,0.304313, 595 chr1 1403473 1403474 rs1240727 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SEQUENOM,SSMP, 2 C,G, 2068.000000,2940.000000, 0.412939,0.587061, maf-5-some-pop,maf-5-all-pops 595 chr1 1403495 1403496 rs144393316 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 595 chr1 1403607 1403608 rs1240728 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,KWOK,SC_JCM, 2 C,G, 4916.000000,92.000000, 0.981629,0.018371, 595 chr1 1403633 1403634 rs75395365 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,T, 1420.000000,3588.000000, 0.283546,0.716454, 595 chr1 1403692 1403693 rs139601047 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, 595 chr1 1403813 1403814 rs146537972 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, 595 chr1 1403819 1403820 rs111835061 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1403886 1403887 rs149946098 0 + G G A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1403893 1403894 rs145079480 0 + A A A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1403972 1403972 rs111566296 0 + - - -/G genomic insertion unknown 0 0 untranslated-3 between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSIP,SSMP, 2 -,G, 2930.000000,2078.000000, 0.585064,0.414936, 595 chr1 1404000 1404001 rs149123833 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 G,T, 4669.000000,339.000000, 0.932308,0.067692, 595 chr1 1404015 1404016 rs12089719 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1415.000000,3593.000000, 0.282548,0.717452, 595 chr1 1404235 1404236 rs1240730 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,KWOK,SC_JCM,SSMP, 2 C,T, 2971.000000,2037.000000, 0.593251,0.406749, 595 chr1 1404242 1404243 rs376118699 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1404275 1404276 rs200655334 0 + G G -/G genomic deletion unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 -,G, 124.000000,4884.000000, 0.024760,0.975240, 595 chr1 1404383 1404384 rs12060201 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSAHASNP,TISHKOFF, 2 C,G, 4878.000000,130.000000, 0.974042,0.025959, 595 chr1 1404467 1404468 rs1240731 0 + T T C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,KWOK,SSMP, 2 C,T, 2356.000000,2652.000000, 0.470447,0.529553, 595 chr1 1404808 1404809 rs1240732 0 + A A A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2660.000000,2348.000000, 0.531150,0.468850, maf-5-some-pop 595 chr1 1404848 1404849 rs74572329 0 + G G C/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1422.000000,3586.000000, 0.283946,0.716054, 595 chr1 1404883 1404884 rs112408342 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 595 chr1 1405413 1405414 rs1240733 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2352.000000,2656.000000, 0.469649,0.530351, 595 chr1 1405805 1405806 rs548067533 0 + T T -/T genomic deletion unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 -,T, 505.000000,4503.000000, 0.100839,0.899161, 595 chr1 1405950 1405951 rs142270607 0 + T T C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1406020 1406020 rs200119093 0 + - - -/G genomic insertion unknown 0 0 near-gene-3,near-gene-5 between 1 2 1000GENOMES,TISHKOFF, 2 -,G, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1406523 1406524 rs1240734 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop,maf-5-all-pops 595 chr1 1406760 1406761 rs145089133 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1406873 1406874 rs149072168 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1406970 1406971 rs79621608 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3845.000000,1163.000000, 0.767772,0.232228, 595 chr1 1407038 1407039 rs191383899 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1407042 1407043 rs1240735 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,KWOK,SC_JCM, 2 A,C, 4542.000000,466.000000, 0.906949,0.093051, 595 chr1 1407164 1407165 rs140699979 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 595 chr1 1407208 1407209 rs1240505 0 - C C C/G genomic single by-frequency 0.4352 0.167931 ncRNA,untranslated-5 exact 1 NonIntegerChromCount 1 KWOK, 2 C,G, 58.880001,125.120003, 0.320000,0.680000, maf-5-some-pop,maf-5-all-pops 595 chr1 1407371 1407372 rs188574574 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 3444.000000,1564.000000, 0.687700,0.312300, 595 chr1 1407537 1407538 rs78689788 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 3063.000000,1945.000000, 0.611621,0.388379, 595 chr1 1407739 1407740 rs190009463 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1408024 1408025 rs145908856 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 595 chr1 1408362 1408363 rs149386026 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1408468 1408469 rs1240737 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2416.000000,2592.000000, 0.482428,0.517572, 595 chr1 1408514 1408515 rs569834397 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 82.000000,4926.000000, 0.016374,0.983626, 595 chr1 1408549 1408550 rs143656588 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,PJP,SSMP,TISHKOFF, 2 C,T, 4574.000000,434.000000, 0.913339,0.086661, 595 chr1 1408570 1408571 rs139809731 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1409369 1409370 rs140237531 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 595 chr1 1409608 1409609 rs143332441 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 595 chr1 1409638 1409639 rs78712159 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3843.000000,1165.000000, 0.767372,0.232628, 595 chr1 1409653 1409654 rs191555805 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1409779 1409780 rs150852056 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 595 chr1 1409803 1409804 rs138253659 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4703.000000,305.000000, 0.939097,0.060903, 595 chr1 1410054 1410054 rs200910752 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4946.000000,62.000000, 0.987620,0.012380, 595 chr1 1410252 1410253 rs144005379 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 595 chr1 1410624 1410624 rs572303323 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4894.000000,114.000000, 0.977236,0.022764, 595 chr1 1411028 1411052 rs576215040 0 + CACCAGCGCTCGCCCTGCACTCCA CACCAGCGCTCGCCCTGCACTCCA -/CACCAGCGCTCGCCCTGCACTCCA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACCAGCGCTCGCCCTGCACTCCA, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1411209 1411212 rs201455988 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CTC, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1411458 1411459 rs148111935 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,PJP,TISHKOFF, 2 C,T, 2238.000000,2770.000000, 0.446885,0.553115, 595 chr1 1411509 1411510 rs188428615 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1411570 1411571 rs139247230 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,T, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1411574 1411575 rs35666103 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 1169.000000,3839.000000, 0.233427,0.766573, 595 chr1 1411645 1411646 rs1151487 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,KWOK,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2397.000000,2611.000000, 0.478634,0.521366, 595 chr1 1411674 1411675 rs192875572 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, 595 chr1 1411875 1411876 rs12354350 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop 595 chr1 1411930 1411931 rs141390154 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1411988 1411989 rs150276403 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 595 chr1 1412237 1412238 rs111993331 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1412307 1412308 rs143786449 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 164.000000,4844.000000, 0.032748,0.967252, 595 chr1 1412310 1412311 rs113763530 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1412326 1412327 rs112841381 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1412658 1412659 rs146343349 0 + G G G/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4844.000000,164.000000, 0.967252,0.032748, 595 chr1 1412760 1412761 rs112572711 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1413057 1413062 rs199892482 0 + TTTTA TTTTA -/TTTTA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,TTTTA, 1478.000000,3530.000000, 0.295128,0.704872, 595 chr1 1413342 1413343 rs144049805 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4907.000000,101.000000, 0.979832,0.020168, 595 chr1 1413883 1413884 rs368365041 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 595 chr1 1413924 1413925 rs371404580 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 595 chr1 1413947 1413948 rs369198244 0 + T T C/T genomic single unknown 0 0 coding-synon,intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 249.000000,4759.000000, 0.049720,0.950280, 595 chr1 1413974 1413975 rs113626733 0 + C C C/T genomic single unknown 0 0 coding-synon,intron exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 595 chr1 1414070 1414071 rs200314338 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 595 chr1 1414159 1414160 rs558232454 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1414270 1414271 rs371986428 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, 595 chr1 1414302 1414303 rs560306166 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4879.000000,129.000000, 0.974241,0.025759, 595 chr1 1414620 1414621 rs143679706 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1414688 1414689 rs79585054 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,GMI,SSMP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, 595 chr1 1414703 1414704 rs35839908 0 - C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1414713 1414714 rs1153102 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2825.000000,2183.000000, 0.564097,0.435903, 595 chr1 1414883 1414884 rs142407972 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, 595 chr1 1415062 1415063 rs1153104 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2077.000000,2931.000000, 0.414736,0.585264, 595 chr1 1415083 1415084 rs111163135 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 595 chr1 1415098 1415099 rs1153105 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop 595 chr1 1415146 1415147 rs148582060 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4860.000000,148.000000, 0.970447,0.029553, 595 chr1 1415162 1415163 rs145679677 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, 595 chr1 1415167 1415168 rs187899225 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, 595 chr1 1415174 1415175 rs147712747 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 595 chr1 1415292 1415293 rs142543157 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 595 chr1 1415335 1415336 rs144681855 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1415475 1415476 rs1153106 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP, 2 C,G, 2077.000000,2931.000000, 0.414736,0.585264, 595 chr1 1415509 1415510 rs150397966 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, 595 chr1 1415518 1415519 rs138156008 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 595 chr1 1415542 1415543 rs148895188 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 595 chr1 1415603 1415604 rs71628972 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 595 chr1 1415748 1415749 rs137979847 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1416048 1416049 rs112150978 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4833.000000,175.000000, 0.965056,0.034944, 595 chr1 1416082 1416083 rs111612395 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, 595 chr1 1416116 1416117 rs113958415 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1416139 1416140 rs150710180 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1416144 1416145 rs139052076 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, 595 chr1 1416157 1416158 rs113814750 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, 595 chr1 1416221 1416222 rs147329037 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 595 chr1 1416357 1416358 rs199506445 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 595 chr1 1416369 1416370 rs1153096 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2189.000000,2819.000000, 0.437101,0.562899, maf-5-some-pop,maf-5-all-pops 595 chr1 1416450 1416451 rs371215775 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 357.000000,4651.000000, 0.071286,0.928714, 595 chr1 1417035 1417036 rs200239479 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 1176.000000,3832.000000, 0.234824,0.765176, 595 chr1 1417173 1417174 rs148945468 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1417184 1417185 rs112570066 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 595 chr1 1417336 1417337 rs192245001 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 286.000000,4722.000000, 0.057109,0.942891, 595 chr1 1417348 1417349 rs368797065 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 595 chr1 1417434 1417435 rs184582628 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 595 chr1 1417648 1417649 rs140940347 0 + T T G/T genomic single unknown 0 0 ncRNA,missense exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,TISHKOFF, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 595 chr1 1417695 1417696 rs819970 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 595 chr1 1417704 1417704 rs536511218 0 + - - -/GCCGGCCACAGATGGAGCCCCGC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GCCGGCCACAGATGGAGCCCCGC, 4888.000000,120.000000, 0.976038,0.023962, 595 chr1 1417707 1417708 rs189069699 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1417771 1417772 rs145022716 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 595 chr1 1417781 1417782 rs819971 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,KWOK,PJP,SSMP,TISHKOFF, 2 A,G, 2286.000000,2722.000000, 0.456470,0.543530, 595 chr1 1418115 1418116 rs2862156 0 - C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1418138 1418139 rs3961781 0 - G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1418305 1418306 rs143411595 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1418395 1418396 rs147153233 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4883.000000,125.000000, 0.975040,0.024960, 595 chr1 1418530 1418531 rs819973 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 5008.000000,0.000000, 1.000000,0.000000, 595 chr1 1418671 1418672 rs139359550 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 595 chr1 1418811 1418812 rs145241900 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, 595 chr1 1419277 1419278 rs819975 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2415.000000,2593.000000, 0.482228,0.517772, 595 chr1 1419521 1419522 rs143557785 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, 595 chr1 1419653 1419654 rs2872242 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 595 chr1 1420026 1420027 rs144843738 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 116.000000,4892.000000, 0.023163,0.976837, 595 chr1 1420076 1420077 rs148595005 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4906.000000,102.000000, 0.979633,0.020367, 595 chr1 1420365 1420366 rs371202594 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, 595 chr1 1420452 1420453 rs150679247 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 595 chr1 1420569 1420574 rs370138022 0 + CCCTC CCCTC -/CCCTC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,SSIP,SSMP, 2 -,CCCTC, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1420661 1420662 rs3736372 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,YUSUKE, 2 A,G, 3342.000000,1666.000000, 0.667332,0.332668, maf-5-some-pop,maf-5-all-pops 595 chr1 1420703 1420704 rs4970453 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, 595 chr1 1420752 1420753 rs139537750 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 595 chr1 1420889 1420890 rs113537492 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, 595 chr1 1421001 1421002 rs111376501 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 G,T, 316.000000,4692.000000, 0.063099,0.936901, 595 chr1 1421021 1421022 rs112314200 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,MPI_MOLGEN, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, 595 chr1 1421156 1421157 rs1622213 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 595 chr1 1421187 1421188 rs112490584 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1421247 1421248 rs145894390 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,T, 247.000000,4761.000000, 0.049321,0.950679, 595 chr1 1421274 1421275 rs138621682 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, 595 chr1 1421284 1421285 rs140078223 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,C, 115.000000,4893.000000, 0.022963,0.977037, 595 chr1 1421390 1421391 rs150304794 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 595 chr1 1421410 1421411 rs138326679 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, 595 chr1 1421530 1421531 rs819976 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 595 chr1 1421578 1421579 rs142840431 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1421726 1421727 rs138964794 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 279.000000,4729.000000, 0.055711,0.944289, 595 chr1 1421733 1421734 rs77085485 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 1457.000000,3551.000000, 0.290935,0.709065, 595 chr1 1421751 1421752 rs146336885 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 370.000000,4638.000000, 0.073882,0.926118, 595 chr1 1421775 1421776 rs79881454 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 3811.000000,1197.000000, 0.760982,0.239018, 595 chr1 1421821 1421822 rs181898807 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4816.000000,192.000000, 0.961661,0.038339, 595 chr1 1421953 1421954 rs137911966 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, 595 chr1 1421990 1421991 rs860213 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,KWOK,SC_JCM,SC_SNP,SSMP, 2 A,G, 1934.000000,3074.000000, 0.386182,0.613818, 595 chr1 1422716 1422717 rs144449807 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4906.000000,102.000000, 0.979633,0.020367, 595 chr1 1422791 1422792 rs147792428 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1422902 1422903 rs148862875 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1423008 1423009 rs147983918 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 595 chr1 1423266 1423267 rs819977 0 + A A A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP, 2 A,G, 2570.000000,2438.000000, 0.513179,0.486821, maf-5-some-pop,maf-5-all-pops 595 chr1 1423398 1423399 rs112245150 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, 595 chr1 1423728 1423729 rs77172447 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3813.000000,1195.000000, 0.761382,0.238618, 595 chr1 1423753 1423754 rs148723748 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 595 chr1 1424031 1424032 rs819978 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2578.000000,2430.000000, 0.514776,0.485224, 595 chr1 1424350 1424351 rs113423732 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1424394 1424395 rs79789944 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4680.000000,328.000000, 0.934505,0.065495, 595 chr1 1424694 1424695 rs144622790 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 595 chr1 1424923 1424924 rs112670578 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, 595 chr1 1425016 1425017 rs533254283 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1425017 1425018 rs550292155 0 + T T G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1425127 1425128 rs145783063 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3,ncRNA,missense exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, 595 chr1 1425146 1425147 rs61744101 0 + T T C/T genomic single unknown 0 0 coding-synon,intron,near-gene-3,ncRNA exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1203.000000,3805.000000, 0.240216,0.759784, maf-5-some-pop,maf-5-all-pops 595 chr1 1425161 1425162 rs111957441 0 + C C C/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, 595 chr1 1425180 1425181 rs138842961 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 595 chr1 1425295 1425296 rs41285828 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 2880.000000,2128.000000, 0.575080,0.424920, 595 chr1 1425326 1425327 rs142902991 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 595 chr1 1425383 1425384 rs819979 0 + G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 157.000000,4851.000000, 0.031350,0.968650, 595 chr1 1425406 1425407 rs2649578 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2680.000000,2328.000000, 0.535144,0.464856, maf-5-some-pop,maf-5-all-pops 595 chr1 1425410 1425411 rs61777878 0 + C C A/C genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL, 2 A,C, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 595 chr1 1425411 1425412 rs2649579 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 10 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2691.000000,2317.000000, 0.537340,0.462660, maf-5-some-pop 595 chr1 1425426 1425427 rs543476495 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,SSIP, 2 A,G, 4140.000000,868.000000, 0.826677,0.173323, 595 chr1 1425489 1425490 rs111984006 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 303.000000,4705.000000, 0.060503,0.939497, 595 chr1 1425501 1425502 rs2242395 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 595 chr1 1425666 1425667 rs61737193 0 + T T C/T genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 5 1000GENOMES,BUSHMAN,CORNELL,NHLBI-ESP,TISHKOFF, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 595 chr1 1425699 1425700 rs819980 0 + T T C/T genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 20 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop 595 chr1 1425815 1425816 rs149187984 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, 595 chr1 1426002 1426003 rs143153541 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 4 1000GENOMES,GMI,NHLBI-ESP,SSMP, 2 A,G, 312.000000,4696.000000, 0.062300,0.937700, 595 chr1 1426477 1426478 rs113618724 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 295.000000,4713.000000, 0.058906,0.941094, 595 chr1 1426873 1426874 rs139112915 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 595 chr1 1427198 1427199 rs151111216 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 595 chr1 1427671 1427672 rs819981 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2575.000000,2433.000000, 0.514177,0.485823, 595 chr1 1427710 1427711 rs148059030 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 595 chr1 1427856 1427856 rs200944167 0 + - - -/CT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 -,CT, 4711.000000,297.000000, 0.940695,0.059305, 595 chr1 1427874 1427875 rs141601998 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, 595 chr1 1427883 1427884 rs139232672 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 83.000000,4925.000000, 0.016573,0.983427, 595 chr1 1427999 1427999 rs59289285 0 + - - -/C genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 -,C, 2577.000000,2431.000000, 0.514577,0.485423, 595 chr1 1428128 1428129 rs149878007 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4728.000000,280.000000, 0.944089,0.055911, 595 chr1 1428229 1428230 rs819982 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2432.000000,2576.000000, 0.485623,0.514377, 595 chr1 1428295 1428296 rs142458952 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 119.000000,4889.000000, 0.023762,0.976238, 595 chr1 1428319 1428319 rs531123515 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 3410.000000,1598.000000, 0.680911,0.319089, 595 chr1 1428421 1428422 rs151293203 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1428644 1428645 rs145592166 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 4870.000000,138.000000, 0.972444,0.027556, 595 chr1 1428785 1428786 rs113617310 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 297.000000,4711.000000, 0.059305,0.940695, 595 chr1 1429404 1429405 rs143195521 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4922.000000,86.000000, 0.982827,0.017173, 595 chr1 1429484 1429485 rs79607068 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1405.000000,3603.000000, 0.280551,0.719449, 595 chr1 1429545 1429546 rs146257197 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 595 chr1 1429651 1429652 rs141687825 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 131.000000,4877.000000, 0.026158,0.973842, 595 chr1 1429672 1429673 rs150497555 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1429748 1429749 rs139474243 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 595 chr1 1429867 1429868 rs182532226 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, 595 chr1 1429932 1429933 rs113541864 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, 595 chr1 1429995 1429996 rs112806684 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 451.000000,4557.000000, 0.090056,0.909944, 595 chr1 1430366 1430367 rs140439620 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1430515 1430516 rs113215852 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, 595 chr1 1430589 1430590 rs138029725 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4876.000000,132.000000, 0.973642,0.026358, 595 chr1 1430601 1430602 rs4436325 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,SC_JCM,SSAHASNP, 2 G,T, 1510.000000,3498.000000, 0.301518,0.698482, 595 chr1 1430689 1430690 rs376219560 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1430692 1430693 rs370573880 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, 595 chr1 1430696 1430697 rs373968684 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1430707 1430708 rs370118521 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 595 chr1 1430724 1430725 rs112581151 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 595 chr1 1430730 1430731 rs368537959 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1430736 1430737 rs28394081 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1177.000000,3831.000000, 0.235024,0.764976, 595 chr1 1430970 1430971 rs147286181 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, 595 chr1 1430984 1430985 rs139902189 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 8 1000GENOMES,EVA-GONL,EXOME_CHIP,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, 595 chr1 1431074 1431075 rs79205801 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,SEATTLESEQ, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 595 chr1 1431108 1431109 rs144198445 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,missense exact 1 5 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 595 chr1 1431408 1431408 rs547026516 0 + - - -/G genomic insertion unknown 0 0 intron,ncRNA,untranslated-3 between 1 1 1000GENOMES, 2 -,G, 4898.000000,110.000000, 0.978035,0.021965, 595 chr1 1431501 1431502 rs8241 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 6 1000GENOMES,CGAP-GAI,EVA-GONL,LEE,SSMP,TISHKOFF, 2 A,G, 391.000000,4617.000000, 0.078075,0.921925, 595 chr1 1431708 1431709 rs146920074 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1431806 1431807 rs2313133 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,TSC-CSHL, 2 C,G, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1431811 1431812 rs368012105 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 -,A, 120.000000,4888.000000, 0.023962,0.976038, 595 chr1 1431877 1431878 rs147329358 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, 595 chr1 1431956 1431957 rs376972057 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 595 chr1 1432047 1432048 rs147100804 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,PJP,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 595 chr1 1432332 1432333 rs819985 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,KWOK,PJP,SSMP,TSC-CSHL, 2 C,T, 2164.000000,2844.000000, 0.432109,0.567891, 595 chr1 1432352 1432353 rs34621879 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,GMI,PJP,SSMP, 2 A,G, 1987.000000,3021.000000, 0.396765,0.603235, 595 chr1 1432484 1432485 rs111691241 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 G,T, 691.000000,4317.000000, 0.137979,0.862021, 595 chr1 1432967 1432968 rs140032600 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1432985 1432986 rs4970454 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,GMI,PJP,WI_SSAHASNP, 2 C,G, 3718.000000,1290.000000, 0.742412,0.257588, 595 chr1 1433121 1433123 rs75035967 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 -,TG, 1531.000000,3477.000000, 0.305711,0.694289, 595 chr1 1433282 1433283 rs11486171 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 595 chr1 1433486 1433487 rs149124327 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1433494 1433495 rs6688651 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,SSMP, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, 595 chr1 1433848 1433849 rs141178962 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1433987 1433988 rs146962662 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1433995 1433996 rs819987 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,KWOK,SC_JCM, 2 C,T, 399.000000,4609.000000, 0.079673,0.920327, 595 chr1 1434050 1434051 rs192102992 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 595 chr1 1434239 1434240 rs112479096 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1434348 1434349 rs377252484 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,T, 1420.000000,3588.000000, 0.283546,0.716454, 595 chr1 1434504 1434505 rs149434212 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 595 chr1 1434583 1434584 rs144762725 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1434718 1434719 rs111923050 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 586.000000,4422.000000, 0.117013,0.882987, 595 chr1 1434857 1434858 rs11488460 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 595 chr1 1434877 1434878 rs112516558 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP, 2 A,C, 135.000000,4873.000000, 0.026957,0.973043, 595 chr1 1434946 1434947 rs111976714 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, 595 chr1 1435004 1435005 rs143584911 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 595 chr1 1435262 1435263 rs189948263 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 595 chr1 1435263 1435264 rs150834979 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1435448 1435449 rs111457107 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 121.000000,4887.000000, 0.024161,0.975839, 595 chr1 1435523 1435524 rs186758134 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 595 chr1 1435567 1435568 rs191535434 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1435804 1435805 rs183795286 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, 595 chr1 1435806 1435807 rs145549335 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, 595 chr1 1435878 1435879 rs532888249 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 100.000000,4908.000000, 0.019968,0.980032, 595 chr1 1435880 1435881 rs543549289 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 595 chr1 1435885 1435886 rs563226230 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 595 chr1 1435887 1435888 rs528889980 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 595 chr1 1435911 1435912 rs565657401 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1435912 1435913 rs528332590 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1435938 1435939 rs147588481 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4875.000000,133.000000, 0.973442,0.026557, 595 chr1 1435971 1435973 rs201504712 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,TT, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1435984 1435984 rs374188904 0 + - - -/AT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AT, 4854.000000,154.000000, 0.969249,0.030751, 595 chr1 1436058 1436059 rs28755011 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,EVA-GONL,SSAHASNP,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 595 chr1 1436060 1436061 rs191108702 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1436061 1436062 rs148195194 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 595 chr1 1436070 1436071 rs140589642 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 141.000000,4867.000000, 0.028155,0.971845, 595 chr1 1436098 1436099 rs150487231 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4014.000000,994.000000, 0.801518,0.198482, 595 chr1 1436104 1436105 rs113320106 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 595 chr1 1436108 1436109 rs9439434 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, 595 chr1 1436115 1436116 rs186823490 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1436124 1436125 rs9439435 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,C, 2578.000000,2430.000000, 0.514776,0.485224, 595 chr1 1436534 1436535 rs75919850 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4078.000000,930.000000, 0.814297,0.185703, 595 chr1 1436640 1436640 rs528600925 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 2930.000000,2078.000000, 0.585064,0.414936, 595 chr1 1436719 1436720 rs185374100 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1437068 1437069 rs150793469 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1437069 1437070 rs139793547 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 4895.000000,113.000000, 0.977436,0.022564, 595 chr1 1437249 1437250 rs201775921 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 114.000000,4894.000000, 0.022764,0.977236, 595 chr1 1437293 1437294 rs112904962 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1437500 1437501 rs149699137 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 138.000000,4870.000000, 0.027556,0.972444, 595 chr1 1437600 1437600 rs377727458 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,T, 4518.000000,490.000000, 0.902156,0.097843, 595 chr1 1437604 1437605 rs145442616 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,T, 173.000000,4835.000000, 0.034545,0.965455, 595 chr1 1437680 1437681 rs148819757 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 595 chr1 1437876 1437877 rs186143160 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, 595 chr1 1437886 1437887 rs79058850 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,C, 3118.000000,1890.000000, 0.622604,0.377396, 595 chr1 1438304 1438305 rs141467590 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4920.000000,88.000000, 0.982428,0.017572, 595 chr1 1438589 1438590 rs145086366 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 595 chr1 1438801 1438802 rs150432721 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 595 chr1 1439570 1439571 rs149556302 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1439670 1439671 rs12021879 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3843.000000,1165.000000, 0.767372,0.232628, 595 chr1 1440038 1440039 rs528083334 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4954.000000,54.000000, 0.989217,0.010783, 595 chr1 1440050 1440050 rs569959018 0 + - - -/AGAG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AGAG, 4827.000000,181.000000, 0.963858,0.036142, 595 chr1 1440396 1440397 rs151164024 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 595 chr1 1440532 1440533 rs2313190 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TSC-CSHL, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 595 chr1 1440549 1440550 rs2313191 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 C,T, 271.000000,4737.000000, 0.054113,0.945887, 595 chr1 1440603 1440604 rs201436830 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,G, 121.000000,4887.000000, 0.024161,0.975839, 595 chr1 1440735 1440736 rs376759794 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1440737 1440747 rs199549503 0 + AAAGCCAGGT AAAGCCAGGT -/AAAGCCAGGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AAAGCCAGGT, 78.000000,4930.000000, 0.015575,0.984425, 595 chr1 1441241 1441242 rs113136151 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4915.000000,93.000000, 0.981430,0.018570, 595 chr1 1441627 1441629 rs200014517 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,AA, 93.000000,4915.000000, 0.018570,0.981430, 595 chr1 1441639 1441640 rs112924334 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, 596 chr1 1441868 1441869 rs146277939 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 596 chr1 1442202 1442203 rs149297286 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 596 chr1 1442704 1442705 rs143201014 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 4911.000000,97.000000, 0.980631,0.019369, 596 chr1 1442851 1442852 rs140649196 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 596 chr1 1442923 1442924 rs145355439 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 596 chr1 1443528 1443529 rs59568290 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, 596 chr1 1443740 1443741 rs58506167 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, 596 chr1 1443982 1443983 rs9439437 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, 596 chr1 1444016 1444017 rs142419639 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 596 chr1 1444071 1444072 rs557709835 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, 596 chr1 1444074 1444075 rs180974244 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, 596 chr1 1444075 1444076 rs536865809 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, 596 chr1 1444085 1444086 rs185372545 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 596 chr1 1444259 1444260 rs2767476 0 - A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,SC_SNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1444291 1444292 rs188684515 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 596 chr1 1444326 1444327 rs6659364 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, 596 chr1 1444367 1444368 rs550953995 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, 596 chr1 1444368 1444369 rs567954607 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4839.000000,169.000000, 0.966254,0.033746, 596 chr1 1444541 1444542 rs28573899 0 + G G G/T genomic single by-cluster,by-frequency 0.031488 0.12146 intron exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,SSAHASNP, 2 G,T, 310.944000,5.056000, 0.984000,0.016000, 596 chr1 1444592 1444593 rs146193895 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 596 chr1 1444619 1444620 rs148574217 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,CLINSEQ_SNP,EVA-GONL, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 596 chr1 1444832 1444833 rs184033498 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 A,C, 88.000000,4920.000000, 0.017572,0.982428, 596 chr1 1444835 1444836 rs188934216 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 596 chr1 1444966 1444967 rs77510880 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,ENSEMBL, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 596 chr1 1444989 1444990 rs567321855 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1445156 1445157 rs529988376 0 + T T A/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, 596 chr1 1445213 1445217 rs367574096 0 + AGTG AGTG -/AGTG genomic deletion unknown 0 0 near-gene-3 range 1 3 1000GENOMES,SSIP,SSMP, 2 -,AGTG, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1445273 1445274 rs191817663 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, 596 chr1 1445503 1445504 rs184986188 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 596 chr1 1445826 1445827 rs185634529 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1445848 1445849 rs116272777 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, 596 chr1 1446220 1446221 rs113458856 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 596 chr1 1446389 1446390 rs111509968 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop,maf-5-all-pops 596 chr1 1446735 1446736 rs78919759 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 596 chr1 1446928 1446929 rs115247282 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop,maf-5-all-pops 596 chr1 1446987 1446988 rs372783214 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 596 chr1 1447122 1447123 rs539585440 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 596 chr1 1447226 1447227 rs116365928 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,maf-5-all-pops 596 chr1 1447324 1447325 rs6690515 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 2311.000000,2697.000000, 0.461462,0.538538, maf-5-some-pop,maf-5-all-pops 596 chr1 1447815 1447816 rs564012773 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1447999 1448000 rs545632949 0 + G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, 596 chr1 1448023 1448024 rs186807304 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 596 chr1 1448099 1448100 rs143610735 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4844.000000,164.000000, 0.967252,0.032748, 596 chr1 1448547 1448548 rs2478796 0 - C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1449500 1449501 rs139049688 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 596 chr1 1449590 1449591 rs144094893 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 3387.000000,1621.000000, 0.676318,0.323682, 596 chr1 1449655 1449656 rs367766386 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 84.000000,4924.000000, 0.016773,0.983227, 596 chr1 1449745 1449746 rs56037581 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,PJP,SSMP, 2 A,G, 3393.000000,1615.000000, 0.677516,0.322484, 596 chr1 1449943 1449944 rs74047253 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 596 chr1 1450289 1450290 rs115156185 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 596 chr1 1450623 1450624 rs150199746 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 137.000000,4871.000000, 0.027356,0.972644, 596 chr1 1450946 1450947 rs6669795 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop 596 chr1 1451207 1451208 rs112465899 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 596 chr1 1451379 1451380 rs9439458 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2358.000000,2650.000000, 0.470847,0.529153, maf-5-some-pop,maf-5-all-pops 596 chr1 1451489 1451490 rs9439460 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,NHLBI-ESP,SC_SNP,SSMP, 2 A,G, 1424.000000,3584.000000, 0.284345,0.715655, 596 chr1 1451520 1451521 rs2478793 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 2 1000GENOMES,SC_JCM, 4 A,C,G,T, 4986.000000,22.000000,22.000000,4986.000000, 0.497804,0.002196,0.002196,0.497804, 596 chr1 1451702 1451703 rs116453850 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 596 chr1 1451705 1451706 rs148015858 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 596 chr1 1451940 1451941 rs140982864 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1452722 1452723 rs145736326 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 596 chr1 1453175 1453176 rs202121361 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1453198 1453199 rs142266637 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1453372 1453373 rs7531221 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1447.000000,3561.000000, 0.288938,0.711062, maf-5-some-pop 596 chr1 1453491 1453492 rs114685401 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 596 chr1 1453664 1453665 rs10159033 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2674.000000,2334.000000, 0.533946,0.466054, 596 chr1 1453671 1453672 rs369016784 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 114.000000,4894.000000, 0.022764,0.977236, 596 chr1 1453672 1453676 rs149530233 0 + CACA CACA -/CACA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,CACA, 324.000000,4684.000000, 0.064696,0.935304, 596 chr1 1453673 1453674 rs199936108 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 4610.000000,398.000000, 0.920527,0.079473, 596 chr1 1453757 1453758 rs114442937 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 596 chr1 1453920 1453921 rs10159041 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops 596 chr1 1454068 1454069 rs12032157 0 + A A A/C genomic single by-frequency,by-1000genomes 0.19179 0.243129 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 108.000000,12.000000, 0.900000,0.100000, maf-5-some-pop,maf-5-all-pops 596 chr1 1454072 1454073 rs538419485 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4899.000000,109.000000, 0.978235,0.021765, 596 chr1 1454137 1454138 rs143003955 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 596 chr1 1454206 1454207 rs114928482 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 596 chr1 1454271 1454272 rs10159059 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,NHLBI-ESP,PJP,SSMP,WUGSC_SSAHASNP, 2 A,T, 1053.000000,3955.000000, 0.210264,0.789736, maf-5-some-pop,maf-5-all-pops 596 chr1 1454411 1454412 rs200551287 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 596 chr1 1454518 1454519 rs370448805 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 161.000000,4847.000000, 0.032149,0.967851, 596 chr1 1455044 1455045 rs574628335 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 596 chr1 1455313 1455314 rs2015388 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3576.000000,1432.000000, 0.714058,0.285942, 596 chr1 1455317 1455318 rs2015387 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TSC-CSHL, 2 C,T, 3572.000000,1436.000000, 0.713259,0.286741, maf-5-some-pop 596 chr1 1455410 1455411 rs61189461 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 111.000000,4897.000000, 0.022164,0.977835, 596 chr1 1455532 1455533 rs141500603 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 596 chr1 1455697 1455698 rs12065730 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SC_SNP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 596 chr1 1455871 1455872 rs113751252 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4886.000000,122.000000, 0.975639,0.024361, 596 chr1 1456408 1456409 rs116644865 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 596 chr1 1456897 1456898 rs9439441 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1744.000000,3264.000000, 0.348243,0.651757, maf-5-some-pop,maf-5-all-pops 596 chr1 1456966 1456967 rs190735602 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 596 chr1 1457924 1457925 rs58447817 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, 596 chr1 1457927 1457928 rs61226390 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 596 chr1 1458030 1458031 rs114557796 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4864.000000,144.000000, 0.971246,0.028754, 596 chr1 1458031 1458032 rs12068889 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop,maf-5-all-pops 596 chr1 1458149 1458150 rs1135025 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,LEE,NHLBI-ESP,SSMP, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 596 chr1 1458254 1458255 rs28675990 0 + T T G/T genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 G,T, 1195.000000,3813.000000, 0.238618,0.761382, 596 chr1 1458284 1458285 rs6675874 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 3333.000000,1675.000000, 0.665535,0.334465, maf-5-some-pop,maf-5-all-pops 596 chr1 1458389 1458390 rs180735117 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 596 chr1 1458401 1458402 rs3813215 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,SC_SNP,SSMP,YUSUKE, 2 A,G, 3344.000000,1664.000000, 0.667732,0.332268, 596 chr1 1458566 1458567 rs3813216 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,YUSUKE, 2 A,G, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop 596 chr1 1458569 1458570 rs112988335 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 4651.000000,357.000000, 0.928714,0.071286, 596 chr1 1458856 1458857 rs549595412 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, 596 chr1 1458858 1458859 rs566127262 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4851.000000,157.000000, 0.968650,0.031350, 596 chr1 1458914 1458915 rs113107431 0 + C C C/T genomic single unknown 0 0 missense exact 1 6 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1458943 1458944 rs112145664 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 596 chr1 1459106 1459107 rs113128965 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,maf-5-all-pops 596 chr1 1459354 1459355 rs181195119 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 596 chr1 1459380 1459381 rs112892832 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,CLINSEQ_SNP,NHLBI-ESP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 596 chr1 1459520 1459521 rs549472980 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 596 chr1 1459581 1459582 rs74508282 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 1734.000000,3274.000000, 0.346246,0.653754, 596 chr1 1459898 1459899 rs575433086 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 596 chr1 1460043 1460044 rs371529763 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 2544.000000,2464.000000, 0.507987,0.492013, 596 chr1 1460129 1460130 rs530825854 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 596 chr1 1460256 1460257 rs6603789 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 4894.000000,114.000000, 0.977236,0.022764, 596 chr1 1460290 1460291 rs9329412 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3861.000000,1147.000000, 0.770966,0.229034, 596 chr1 1460362 1460363 rs12403864 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1460533 1460534 rs57871049 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,HGSV, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1460698 1460699 rs112308966 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 596 chr1 1460793 1460794 rs573507106 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1708.000000,3300.000000, 0.341054,0.658946, 596 chr1 1460905 1460906 rs10796394 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3611.000000,1397.000000, 0.721046,0.278954, 596 chr1 1460939 1460940 rs186798363 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 75.000000,4933.000000, 0.014976,0.985024, 596 chr1 1460954 1460955 rs150267367 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, 596 chr1 1461040 1461041 rs192859203 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 596 chr1 1461465 1461466 rs6686506 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4918.000000,90.000000, 0.982029,0.017971, 596 chr1 1461548 1461549 rs6684212 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3319.000000,1689.000000, 0.662740,0.337260, 596 chr1 1461832 1461833 rs186268381 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CLINSEQ_SNP,NHLBI-ESP,TISHKOFF, 2 C,G, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1462360 1462361 rs571690918 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 596 chr1 1462765 1462766 rs9439462 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop 596 chr1 1463030 1463031 rs75515030 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 596 chr1 1463156 1463157 rs78493114 0 + G G C/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 596 chr1 1463317 1463318 rs11260608 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop 596 chr1 1463330 1463331 rs59025469 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 596 chr1 1463338 1463339 rs376072450 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,WARNICH_LAB, 2 -,T, 1531.000000,3477.000000, 0.305711,0.694289, 596 chr1 1463557 1463558 rs114845849 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 596 chr1 1463763 1463764 rs544147153 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 93.000000,4915.000000, 0.018570,0.981430, 596 chr1 1463768 1463769 rs529796095 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 596 chr1 1463774 1463775 rs540330845 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4915.000000,93.000000, 0.981430,0.018570, 596 chr1 1463869 1463870 rs12035305 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 596 chr1 1463892 1463893 rs112624192 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 123.000000,4885.000000, 0.024561,0.975439, 596 chr1 1463896 1463897 rs114369282 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 596 chr1 1464277 1464278 rs6691733 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 596 chr1 1465340 1465341 rs72898205 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,maf-5-all-pops 596 chr1 1465381 1465382 rs12032637 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3336.000000,1672.000000, 0.666134,0.333866, maf-5-some-pop 596 chr1 1465609 1465610 rs115990140 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 596 chr1 1465652 1465653 rs139538453 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1465688 1465688 rs202104317 0 + - - -/AGTC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AGTC, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1465926 1465926 rs533162940 0 + - - -/TT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TT, 3389.000000,1619.000000, 0.676717,0.323283, 596 chr1 1465932 1465933 rs557883269 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1287.000000,3721.000000, 0.256989,0.743011, 596 chr1 1465934 1465935 rs566260464 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 3385.000000,1623.000000, 0.675919,0.324081, 596 chr1 1465937 1465938 rs543763499 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 596 chr1 1465947 1465948 rs57442627 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HGSV, 2 G,T, 3721.000000,1287.000000, 0.743011,0.256989, 596 chr1 1465964 1465965 rs558683508 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 1276.000000,3732.000000, 0.254792,0.745208, 596 chr1 1465974 1465975 rs542860097 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3737.000000,1271.000000, 0.746206,0.253794, 596 chr1 1466064 1466065 rs59830143 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,SSMP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 596 chr1 1466065 1466066 rs189022728 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, 596 chr1 1466185 1466186 rs529182336 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, 596 chr1 1466186 1466187 rs549234185 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, 596 chr1 1466195 1466196 rs534830246 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, 596 chr1 1466200 1466201 rs551805450 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1122.000000,3886.000000, 0.224042,0.775958, 596 chr1 1466202 1466203 rs571560512 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, 596 chr1 1466207 1466229 rs564016727 0 + CAAAAAAAAAAAAAAAAAAAAA CAAAAAAAAAAAAAAAAAAAAA -/CAAAAAAAAAAAAAAAAAAAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CAAAAAAAAAAAAAAAAAAAAA, 1658.000000,3350.000000, 0.331070,0.668930, 596 chr1 1466229 1466230 rs537492401 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 3350.000000,1658.000000, 0.668930,0.331070, 596 chr1 1466259 1466260 rs115729963 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 596 chr1 1466512 1466513 rs6670992 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 1472.000000,3536.000000, 0.293930,0.706070, maf-5-some-pop 596 chr1 1466521 1466522 rs6680787 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3988.000000,1020.000000, 0.796326,0.203674, maf-5-some-pop,maf-5-all-pops 596 chr1 1466661 1466662 rs141337528 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 596 chr1 1466827 1466828 rs6683520 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3379.000000,1629.000000, 0.674720,0.325280, maf-5-some-pop 596 chr1 1466878 1466879 rs143365565 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 596 chr1 1466968 1466969 rs112386508 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4520.000000,488.000000, 0.902556,0.097444, 596 chr1 1466980 1466981 rs6688404 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 3369.000000,1639.000000, 0.672724,0.327276, 596 chr1 1467321 1467322 rs79463926 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 92.000000,4916.000000, 0.018371,0.981629, 596 chr1 1467484 1467485 rs1987191 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 596 chr1 1467557 1467558 rs4549982 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,HGSV,SC_JCM,TISHKOFF, 2 C,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 596 chr1 1467687 1467687 rs567868090 0 + - - -/GAGTGAGGAAATG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GAGTGAGGAAATG, 4902.000000,106.000000, 0.978834,0.021166, 596 chr1 1468124 1468125 rs148625800 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4882.000000,126.000000, 0.974840,0.025160, 596 chr1 1468177 1468178 rs6694994 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4106.000000,902.000000, 0.819888,0.180112, maf-5-some-pop 596 chr1 1468397 1468398 rs6695186 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1674.000000,3334.000000, 0.334265,0.665735, maf-5-some-pop,maf-5-all-pops 596 chr1 1468474 1468475 rs6677993 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,PJP,SC_SNP,SSMP, 2 A,G, 1629.000000,3379.000000, 0.325280,0.674720, 596 chr1 1468531 1468532 rs6680501 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,GMI,SSMP, 2 A,G, 1037.000000,3971.000000, 0.207069,0.792931, 596 chr1 1468557 1468558 rs6694773 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 3296.000000,1712.000000, 0.658147,0.341853, 596 chr1 1468632 1468633 rs6690064 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3378.000000,1630.000000, 0.674521,0.325479, maf-5-some-pop 596 chr1 1468966 1468967 rs9439445 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1468980 1468981 rs59168450 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 A,T, 173.000000,4835.000000, 0.034545,0.965455, 596 chr1 1469033 1469034 rs2753291 0 - G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1469087 1469088 rs563525731 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4861.000000,147.000000, 0.970647,0.029353, 596 chr1 1469088 1469089 rs575747158 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, 596 chr1 1469089 1469090 rs541494563 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4861.000000,147.000000, 0.970647,0.029353, 596 chr1 1469133 1469134 rs148947529 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 2390.000000,2618.000000, 0.477236,0.522764, 596 chr1 1469220 1469221 rs6698376 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,SC_SNP,SI_EXO,SSMP, 2 C,T, 2319.000000,2689.000000, 0.463059,0.536941, 596 chr1 1469234 1469235 rs60473728 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP, 2 A,G, 762.000000,4246.000000, 0.152157,0.847843, 596 chr1 1469262 1469263 rs6681228 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,NHLBI-ESP,SC_SNP,SI_EXO,SSMP, 2 G,T, 3410.000000,1598.000000, 0.680911,0.319089, 596 chr1 1469288 1469289 rs28370384 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SI_EXO,SSAHASNP,SSMP, 2 C,G, 2473.000000,2535.000000, 0.493810,0.506190, maf-5-some-pop,maf-5-all-pops 596 chr1 1469471 1469472 rs115508211 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 596 chr1 1469596 1469596 rs200445422 0 + - - -/G genomic insertion unknown 0 0 untranslated-3 between 1 1 1000GENOMES, 2 -,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1469781 1469782 rs17161064 0 + G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SEQUENOM,SSMP, 2 C,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops 596 chr1 1470160 1470161 rs75249696 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 596 chr1 1470293 1470293 rs5772044 0 + - - -/C genomic insertion unknown 0 0 intron,untranslated-3 between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 3964.000000,1044.000000, 0.791534,0.208466, 596 chr1 1470294 1470295 rs4994703 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,ABI, 2 C,T, 1522.000000,3486.000000, 0.303914,0.696086, 596 chr1 1470396 1470397 rs375304946 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 596 chr1 1470397 1470398 rs7417423 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4395.000000,613.000000, 0.877596,0.122404, 596 chr1 1470463 1470464 rs192637693 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, 596 chr1 1470806 1470807 rs146206869 0 + C C C/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 596 chr1 1471520 1471521 rs28425506 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop 596 chr1 1471649 1471650 rs116391986 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 596 chr1 1472529 1472530 rs115016427 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 596 chr1 1472539 1472540 rs1571148 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3640.000000,1368.000000, 0.726837,0.273163, maf-5-some-pop,maf-5-all-pops 596 chr1 1472872 1472873 rs4259576 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop,maf-5-all-pops 596 chr1 1473084 1473085 rs116702058 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 596 chr1 1473184 1473185 rs58363239 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 504.000000,4504.000000, 0.100639,0.899361, maf-5-some-pop 596 chr1 1474037 1474038 rs79418273 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 596 chr1 1474303 1474304 rs1571150 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 2600.000000,2408.000000, 0.519169,0.480831, maf-5-some-pop,maf-5-all-pops 596 chr1 1474870 1474871 rs9439465 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop,maf-5-all-pops 596 chr1 1475601 1475602 rs542051122 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 153.000000,4855.000000, 0.030551,0.969449, 596 chr1 1475800 1475801 rs190482382 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,GMI, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, 596 chr1 1476136 1476137 rs144828034 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 596 chr1 1477158 1477159 rs144739836 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1477323 1477325 rs3831113 0 + CA CA -/CA genomic deletion unknown 0 0 near-gene-5,untranslated-3 range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CA, 649.000000,4359.000000, 0.129593,0.870407, 596 chr1 1477577 1477578 rs41286746 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP,SI_EXO, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1477659 1477660 rs11807706 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 596 chr1 1478172 1478173 rs3766179 0 - C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 596 chr1 1478379 1478380 rs76756659 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 596 chr1 1478879 1478880 rs6665973 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops 596 chr1 1478970 1478971 rs112703955 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 G,T, 4592.000000,416.000000, 0.916933,0.083067, 596 chr1 1479081 1479082 rs192730094 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 3393.000000,1615.000000, 0.677516,0.322484, 596 chr1 1479147 1479148 rs528167372 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, 596 chr1 1479450 1479451 rs111570453 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 596 chr1 1479581 1479582 rs114557535 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 596 chr1 1479788 1479789 rs142419647 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1480084 1480085 rs11806797 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop,maf-5-all-pops 596 chr1 1480225 1480226 rs116703397 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop 596 chr1 1480984 1480985 rs144854442 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 596 chr1 1481017 1481018 rs144732318 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, 596 chr1 1482153 1482154 rs117505867 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, 596 chr1 1482169 1482170 rs140369870 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1482272 1482273 rs12084237 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,TISHKOFF, 2 A,G, 1040.000000,3968.000000, 0.207668,0.792332, 596 chr1 1482279 1482280 rs572195418 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4220.000000,788.000000, 0.842652,0.157348, 596 chr1 1482280 1482281 rs541200841 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 788.000000,4220.000000, 0.157348,0.842652, 596 chr1 1482281 1482282 rs564457965 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4220.000000,788.000000, 0.842652,0.157348, 596 chr1 1482282 1482283 rs537220127 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 A,G, 4220.000000,788.000000, 0.842652,0.157348, 596 chr1 1482341 1482342 rs111509594 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 711.000000,4297.000000, 0.141973,0.858027, 596 chr1 1482576 1482577 rs75265293 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 596 chr1 1482837 1482838 rs12045013 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop 596 chr1 1483009 1483010 rs7517401 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3410.000000,1598.000000, 0.680911,0.319089, maf-5-some-pop,maf-5-all-pops 596 chr1 1483054 1483055 rs74864943 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 596 chr1 1483275 1483276 rs12085735 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop,maf-5-all-pops 596 chr1 1483732 1483733 rs147320830 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 360.000000,4648.000000, 0.071885,0.928115, 596 chr1 1483877 1483878 rs115674913 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 596 chr1 1484461 1484462 rs77658544 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 596 chr1 1484805 1484806 rs150014561 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, 596 chr1 1484854 1484855 rs11807874 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 596 chr1 1484921 1484922 rs61594194 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 596 chr1 1484969 1484970 rs7515814 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1479.000000,3529.000000, 0.295327,0.704673, 596 chr1 1485346 1485347 rs7516190 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 2789.000000,2219.000000, 0.556909,0.443091, 596 chr1 1485483 1485484 rs142142110 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1486781 1486782 rs114370906 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 596 chr1 1486938 1486939 rs3766175 0 - A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,GMI,HGSV,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1487042 1487043 rs74511912 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 596 chr1 1487231 1487232 rs115414524 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 596 chr1 1487495 1487496 rs72634805 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 596 chr1 1487524 1487525 rs3766173 0 - C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1488379 1488380 rs12408062 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 443.000000,4565.000000, 0.088459,0.911542, 596 chr1 1488398 1488399 rs561625712 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 2653.000000,2355.000000, 0.529752,0.470248, 596 chr1 1488582 1488583 rs6603790 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 596 chr1 1488999 1489006 rs544089233 0 + AAAAAAA AAAAAAA -/AAAAAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AAAAAAA, 3339.000000,1669.000000, 0.666733,0.333267, 596 chr1 1489071 1489072 rs3930748 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, 596 chr1 1489620 1489621 rs11590038 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2306.000000,2702.000000, 0.460463,0.539537, maf-5-some-pop,maf-5-all-pops 596 chr1 1489625 1489626 rs11588893 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 2613.000000,2395.000000, 0.521765,0.478235, maf-5-some-pop,maf-5-all-pops 596 chr1 1489669 1489670 rs7531530 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 2102.000000,2906.000000, 0.419728,0.580272, maf-5-some-pop,maf-5-all-pops 596 chr1 1489705 1489706 rs142063993 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,WARNICH_LAB, 2 A,G, 717.000000,4291.000000, 0.143171,0.856829, 596 chr1 1489729 1489730 rs12408695 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 442.000000,4566.000000, 0.088259,0.911741, 596 chr1 1490070 1490071 rs150797936 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1490073 1490074 rs7366635 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 596 chr1 1490547 1490548 rs78064294 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 596 chr1 1490626 1490627 rs3753330 0 - T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 596 chr1 1491250 1491251 rs12048706 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop,maf-5-all-pops 596 chr1 1491445 1491446 rs147806232 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 596 chr1 1491583 1491584 rs148817889 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 596 chr1 1491943 1491944 rs77860100 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 596 chr1 1492096 1492096 rs532886150 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4953.000000,55.000000, 0.989018,0.010982, 596 chr1 1492525 1492526 rs4320726 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4512.000000,496.000000, 0.900958,0.099041, maf-5-some-pop 596 chr1 1492740 1492741 rs58599626 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, 596 chr1 1493746 1493747 rs880050 0 - C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,CSHL-HAPMAP,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 596 chr1 1494908 1494909 rs116966682 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 596 chr1 1495082 1495083 rs6667347 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3398.000000,1610.000000, 0.678514,0.321486, 596 chr1 1495258 1495259 rs61774864 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 596 chr1 1495625 1495626 rs78755737 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 596 chr1 1496144 1496145 rs12410854 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops 596 chr1 1496363 1496364 rs114110867 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 596 chr1 1496515 1496516 rs150545133 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 596 chr1 1496640 1496641 rs146876336 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 G,T, 120.000000,4888.000000, 0.023962,0.976038, 596 chr1 1497641 1497645 rs148029734 0 + TTTC TTTC -/TTTC genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,TTTC, 3340.000000,1668.000000, 0.666933,0.333067, 596 chr1 1499178 1499179 rs61350344 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 596 chr1 1499297 1499298 rs9439468 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop 596 chr1 1499523 1499524 rs115930122 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4918.000000,90.000000, 0.982029,0.017971, 596 chr1 1500485 1500502 rs141720989 0 + AAGGCAGGCGGATCATG AAGGCAGGCGGATCATG -/AAGGCAGGCGGATCATG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AAGGCAGGCGGATCATG, 2143.000000,2865.000000, 0.427915,0.572085, 596 chr1 1500940 1500941 rs6603791 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 596 chr1 1501063 1501064 rs6656541 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3544.000000,1464.000000, 0.707668,0.292332, maf-5-some-pop,maf-5-all-pops 596 chr1 1501088 1501089 rs77167259 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 596 chr1 1501181 1501182 rs79225965 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop 596 chr1 1501465 1501466 rs7543799 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3559.000000,1449.000000, 0.710663,0.289337, maf-5-some-pop,maf-5-all-pops 596 chr1 1501479 1501485 rs201655463 0 + AAAAAA AAAAAA -/AAAAAA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,AAAAAA, 653.000000,4355.000000, 0.130391,0.869609, 596 chr1 1501655 1501655 rs200937604 0 + - - -/A genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4906.000000,102.000000, 0.979633,0.020367, 596 chr1 1501796 1501803 rs140986351 0 + CAGGGCG CAGGGCG -/CAGGGCG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CAGGGCG, 59.000000,4949.000000, 0.011781,0.988219, 596 chr1 1501995 1501996 rs141654613 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 596 chr1 1502141 1502142 rs147023978 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 596 chr1 1502750 1502751 rs116642201 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 596 chr1 1503035 1503036 rs60445846 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 596 chr1 1503094 1503095 rs7367692 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3545.000000,1463.000000, 0.707867,0.292133, 596 chr1 1503098 1503099 rs7364711 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1463.000000,3545.000000, 0.292133,0.707867, 596 chr1 1503248 1503249 rs139075034 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 596 chr1 1503649 1503650 rs74045618 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,T, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1503807 1503808 rs11578409 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 3316.000000,1692.000000, 0.662141,0.337859, maf-5-some-pop,maf-5-all-pops 596 chr1 1503927 1503928 rs7550471 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3398.000000,1610.000000, 0.678514,0.321486, maf-5-some-pop,maf-5-all-pops 596 chr1 1504670 1504671 rs80216842 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop 596 chr1 1505040 1505041 rs6603792 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops 596 chr1 1505215 1505219 rs78104724 0 + AGCT AGCT -/AGCT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,AGCT, 649.000000,4359.000000, 0.129593,0.870407, 596 chr1 1505254 1505255 rs6603793 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 596 chr1 1505966 1505967 rs7548959 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1618.000000,3390.000000, 0.323083,0.676917, maf-5-some-pop,maf-5-all-pops 596 chr1 1506117 1506118 rs118064867 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 596 chr1 1506814 1506814 rs560900322 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 1700.000000,3308.000000, 0.339457,0.660543, 596 chr1 1507161 1507162 rs116210771 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 596 chr1 1507174 1507174 rs71578326 0 + - - -/T genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 1580.000000,3428.000000, 0.315495,0.684505, 596 chr1 1507328 1507329 rs11801333 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop,maf-5-all-pops 596 chr1 1507365 1507366 rs9439469 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2751.000000,2257.000000, 0.549321,0.450679, 596 chr1 1507664 1507665 rs569726044 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 596 chr1 1507911 1507912 rs61774865 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 1463.000000,3545.000000, 0.292133,0.707867, 596 chr1 1508330 1508331 rs116720752 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 596 chr1 1508645 1508647 rs538824620 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AA, 507.000000,4501.000000, 0.101238,0.898762, 596 chr1 1508741 1508742 rs114925670 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4510.000000,498.000000, 0.900559,0.099441, maf-5-some-pop 596 chr1 1508809 1508827 rs56930035 0 + AAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAA -/AAAAAAAAAAAAAAAAAA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI, 2 -,AAAAAAAAAAAAAAAAAA, 5008.000000,0.000000, 1.000000,0.000000, 596 chr1 1508822 1508823 rs571938179 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 2065.000000,2943.000000, 0.412340,0.587660, 596 chr1 1509033 1509034 rs7520996 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3496.000000,1512.000000, 0.698083,0.301917, maf-5-some-pop,maf-5-all-pops 596 chr1 1509155 1509156 rs7518083 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop,maf-5-all-pops 596 chr1 1509412 1509415 rs33918586 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,ABI,GMI,HGSV,PJP,SSMP, 2 -,AAG, 3495.000000,1513.000000, 0.697883,0.302117, 596 chr1 1509824 1509825 rs6666293 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP, 2 A,G, 1496.000000,3512.000000, 0.298722,0.701278, maf-5-some-pop,maf-5-all-pops 596 chr1 1510035 1510037 rs150737039 0 + GC GC -/GC genomic deletion unknown 0 0 untranslated-5 range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,GC, 3350.000000,1658.000000, 0.668930,0.331070, 596 chr1 1510723 1510724 rs77661767 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 596 chr1 1510800 1510801 rs7519837 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops 596 chr1 1511103 1511104 rs7556282 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3482.000000,1526.000000, 0.695288,0.304712, maf-5-some-pop,maf-5-all-pops 596 chr1 1511243 1511244 rs4590622 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3446.000000,1562.000000, 0.688099,0.311901, 596 chr1 1511314 1511315 rs4618908 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, 596 chr1 1511836 1511837 rs11802492 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 596 chr1 1511878 1511882 rs201674002 0 + TCTT TCTT -/TCTT genomic deletion unknown 0 0 near-gene-5 range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,TCTT, 87.000000,4921.000000, 0.017372,0.982628, 596 chr1 1511983 1511984 rs12063496 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1512074 1512075 rs12069849 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1512884 1512885 rs114517777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513088 1513089 rs115196554 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1513116 1513117 rs72895993 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 596 chr1 1513282 1513283 rs144752615 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513285 1513286 rs148503044 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513563 1513564 rs74890761 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513692 1513693 rs75315239 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 596 chr1 1513720 1513721 rs115244977 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1513751 1513752 rs79429982 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4574.000000,434.000000, 0.913339,0.086661, maf-5-some-pop 596 chr1 1514013 1514014 rs77689498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1514094 1514095 rs72895996