589 chr1 564476 564477 rs6650104 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,AFFY,ILLUMINA,SC_SNP, 2 A,G, 5006.000000,2.000000, 0.999601,0.000399, maf-5-some-pop 589 chr1 564620 564621 rs10458597 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.045009 0.143104 near-gene-5 exact 1 5 AFFY,BGI,KRIBB_YJKIM,SC_SNP,SSAHASNP, 2 C,T, 721.000000,17.000000, 0.976965,0.023035, maf-5-some-pop 589 chr1 565399 565400 rs8179414 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,AFFY,BGI,SC_SNP,SSAHASNP, 2 C,T, 4987.000000,21.000000, 0.995807,0.004193, 589 chr1 566809 566810 rs9645428 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 3.000000,5005.000000, 0.000599,0.999401, 589 chr1 569603 569604 rs9645429 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,AFFY,BROAD,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 38.000000,4970.000000, 0.007588,0.992412, maf-5-some-pop 590 chr1 721289 721290 rs12565286 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 590 chr1 740856 740857 rs12082473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ENSEMBL,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 590 chr1 752565 752566 rs3094315 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3597.000000,1411.000000,1411.000000,3597.000000, 0.359125,0.140875,0.140875,0.359125, maf-5-some-pop,genotype-conflict 590 chr1 761731 761732 rs2286139 0 - C C A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PJP,SC_JCM,SSMP,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3134.000000,1874.000000,1874.000000,3134.000000, 0.312899,0.187101,0.187101,0.312899, maf-5-some-pop,maf-5-all-pops 590 chr1 765268 765269 rs11240776 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 4975.000000,33.000000, 0.993411,0.006589, 590 chr1 777121 777122 rs2980319 0 - A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 780026 780027 rs2977613 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4906.000000,102.000000,102.000000,4906.000000, 0.489816,0.010184,0.010184,0.489816, maf-5-some-pop 590 chr1 785988 785989 rs2980300 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop,maf-5-all-pops,genotype-conflict 591 chr1 792479 792480 rs2905036 0 - C C A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4892.000000,116.000000,116.000000,4892.000000, 0.488419,0.011581,0.011581,0.488419, maf-5-some-pop 591 chr1 798958 798959 rs11240777 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops,genotype-conflict 591 chr1 799462 799463 rs4245756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 591 chr1 888658 888659 rs3748597 0 + T T C/T genomic single unknown 0 0 missense exact 1 32 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 592 chr1 918572 918573 rs2341354 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 592 chr1 926430 926431 rs4970403 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 592 chr1 947033 947034 rs2465126 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4135.000000,873.000000,873.000000,4135.000000, 0.412839,0.087161,0.087161,0.412839, maf-5-some-pop 592 chr1 949607 949608 rs1921 0 + G G A/G genomic single unknown 0 0 missense exact 1 29 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,DEBNICK,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,SC_JCM,SC_SNP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,UWGC,WIAF,YUSUKE, 2 A,G, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 592 chr1 990416 990417 rs2465136 0 - T T A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3085.000000,1923.000000,1923.000000,3085.000000, 0.308007,0.191993,0.191993,0.308007, maf-5-some-pop,maf-5-all-pops 592 chr1 990516 990517 rs2710872 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4597.000000,411.000000,411.000000,4597.000000, 0.458966,0.041034,0.041034,0.458966, maf-5-some-pop 592 chr1 990838 990839 rs13129 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 592 chr1 1003628 1003629 rs4075116 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3609.000000,1399.000000,1399.000000,3609.000000, 0.360323,0.139677,0.139677,0.360323, maf-5-some-pop,maf-5-all-pops,genotype-conflict 592 chr1 1017215 1017216 rs6667248 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,maf-5-all-pops 592 chr1 1018703 1018704 rs9442372 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1948.000000,3060.000000, 0.388978,0.611022, maf-5-some-pop,maf-5-all-pops,genotype-conflict 592 chr1 1039097 1039098 rs11260595 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 592 chr1 1041699 1041700 rs6604968 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 593 chr1 1048954 1048955 rs4970405 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 593 chr1 1089698 1089699 rs6686003 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 A,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop 593 chr1 1097334 1097335 rs9442385 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop,genotype-conflict 593 chr1 1129671 1129672 rs11260554 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop 593 chr1 1130726 1130727 rs10907175 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop,genotype-conflict 593 chr1 1156130 1156131 rs2887286 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2448.000000,2560.000000,2560.000000,2448.000000, 0.244409,0.255591,0.255591,0.244409, maf-5-some-pop,maf-5-all-pops 593 chr1 1158276 1158277 rs3813199 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 622.000000,4386.000000,4386.000000,622.000000, 0.062101,0.437899,0.437899,0.062101, maf-5-some-pop 593 chr1 1158630 1158631 rs6603781 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 593 chr1 1165309 1165310 rs11260562 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 510.000000,4498.000000, 0.101837,0.898163, maf-5-some-pop,genotype-conflict 594 chr1 1186501 1186502 rs6603785 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 594 chr1 1195689 1195690 rs11260568 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 594 chr1 1196470 1196471 rs6673601 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 594 chr1 1198617 1198618 rs12563338 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 594 chr1 1211291 1211292 rs6685064 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop 594 chr1 1217057 1217058 rs3753340 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 274.000000,4734.000000,4734.000000,274.000000, 0.027356,0.472644,0.472644,0.027356, maf-5-some-pop 594 chr1 1218085 1218086 rs6603788 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2657.000000,2351.000000, 0.530551,0.469449, maf-5-some-pop,maf-5-all-pops 594 chr1 1242214 1242215 rs4970431 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 594 chr1 1242467 1242468 rs2274264 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1111.000000,3897.000000,3897.000000,1111.000000, 0.110923,0.389077,0.389077,0.110923, maf-5-some-pop 594 chr1 1268846 1268847 rs307378 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 594 chr1 1297064 1297065 rs2765023 0 - C C A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2454.000000,2554.000000,2554.000000,2454.000000, 0.245008,0.254992,0.254992,0.245008, maf-5-some-pop,maf-5-all-pops 594 chr1 1297421 1297422 rs2765021 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4177.000000,831.000000,831.000000,4177.000000, 0.417033,0.082967,0.082967,0.417033, maf-5-some-pop 595 chr1 1311715 1311716 rs2649589 0 - G G C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3702.000000,1306.000000,1306.000000,3702.000000, 0.369609,0.130391,0.130391,0.369609, maf-5-some-pop,maf-5-all-pops 595 chr1 1333435 1333436 rs1240743 0 - C C G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4319.000000,689.000000,689.000000,4319.000000, 0.431210,0.068790,0.068790,0.431210, maf-5-some-pop,genotype-conflict 595 chr1 1365569 1365570 rs1695824 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1583.000000,3425.000000,3425.000000,1583.000000, 0.158047,0.341953,0.341953,0.158047, maf-5-some-pop 595 chr1 1411875 1411876 rs12354350 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop 595 chr1 1421530 1421531 rs819976 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 596 chr1 1462765 1462766 rs9439462 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop 596 chr1 1467484 1467485 rs1987191 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 596 chr1 1478152 1478153 rs3766180 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1536.000000,3472.000000,3472.000000,1536.000000, 0.153355,0.346645,0.346645,0.153355, maf-5-some-pop,maf-5-all-pops 596 chr1 1498151 1498152 rs2296715 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 636.000000,4372.000000,4372.000000,636.000000, 0.063498,0.436502,0.436502,0.063498, maf-5-some-pop 596 chr1 1500940 1500941 rs6603791 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 596 chr1 1506034 1506035 rs7540231 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,genotype-conflict 596 chr1 1510800 1510801 rs7519837 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops 597 chr1 1647685 1647686 rs909823 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1242.000000,3766.000000, 0.248003,0.751997, maf-5-some-pop,maf-5-all-pops 597 chr1 1647927 1647928 rs1883424 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3268.000000,1740.000000, 0.652556,0.347444, maf-5-some-pop,maf-5-all-pops 597 chr1 1648945 1648946 rs909824 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SEQUENOM,SSMP,TSC-CSHL, 2 C,T, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 597 chr1 1663830 1663831 rs3817856 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3576.000000,1432.000000, 0.714058,0.285942, maf-5-some-pop,genotype-conflict 597 chr1 1688191 1688192 rs2281173 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1870.000000,3138.000000, 0.373403,0.626597, maf-5-some-pop 597 chr1 1692320 1692321 rs1107910 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3241.000000,1767.000000,1767.000000,3241.000000, 0.323582,0.176418,0.176418,0.323582, maf-5-some-pop,maf-5-all-pops 598 chr1 1711413 1711414 rs867207 0 - A A C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4865.000000,143.000000,143.000000,4865.000000, 0.485723,0.014277,0.014277,0.485723, maf-5-some-pop 598 chr1 1721478 1721479 rs2272908 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop 598 chr1 1722931 1722932 rs3737628 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop 598 chr1 1746693 1746694 rs12742323 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop 598 chr1 1753685 1753686 rs12141314 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4193.000000,815.000000, 0.837260,0.162740, maf-5-some-pop,maf-5-all-pops,genotype-conflict 598 chr1 1759025 1759026 rs9786963 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 598 chr1 1759053 1759054 rs10907187 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop,maf-5-all-pops 598 chr1 1778089 1778090 rs12126768 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop,maf-5-all-pops 598 chr1 1783200 1783201 rs12402876 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,maf-5-all-pops 598 chr1 1793785 1793786 rs7511905 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop,genotype-conflict 598 chr1 1804301 1804302 rs3855951 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3720.000000,1288.000000,1288.000000,3720.000000, 0.371406,0.128594,0.128594,0.371406, maf-5-some-pop 598 chr1 1812687 1812688 rs6603803 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop 598 chr1 1823921 1823922 rs6688000 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1176.000000,3832.000000, 0.234824,0.765176, maf-5-some-pop 598 chr1 1829481 1829482 rs745910 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4272.000000,736.000000,736.000000,4272.000000, 0.426518,0.073482,0.073482,0.426518, maf-5-some-pop 599 chr1 1871336 1871337 rs16824543 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop 599 chr1 1888192 1888193 rs3820011 0 - C C G/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 936.000000,4072.000000,4072.000000,936.000000, 0.093450,0.406550,0.406550,0.093450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 599 chr1 1888368 1888369 rs2803285 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 665.000000,4343.000000,4343.000000,665.000000, 0.066394,0.433606,0.433606,0.066394, maf-5-some-pop,genotype-conflict 599 chr1 1903711 1903712 rs13303201 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1366.000000,3642.000000,3642.000000,1366.000000, 0.136382,0.363618,0.363618,0.136382, maf-5-some-pop,maf-5-all-pops 599 chr1 1930753 1930754 rs6605081 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3333.000000,1675.000000, 0.665535,0.334465, maf-5-some-pop,maf-5-all-pops 599 chr1 1948399 1948400 rs13303344 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2729.000000,2279.000000,2279.000000,2729.000000, 0.272464,0.227536,0.227536,0.272464, maf-5-some-pop,maf-5-all-pops 600 chr1 1972461 1972462 rs3121822 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 600 chr1 2021113 2021114 rs13303134 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1430.000000,3578.000000,3578.000000,1430.000000, 0.142772,0.357228,0.357228,0.142772, maf-5-some-pop,maf-5-all-pops 600 chr1 2024063 2024064 rs2459994 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3214.000000,1794.000000, 0.641773,0.358227, maf-5-some-pop 600 chr1 2027900 2027901 rs7513222 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1925.000000,3083.000000, 0.384385,0.615615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 600 chr1 2028736 2028737 rs12563290 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 600 chr1 2032910 2032911 rs12076576 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,SC_SNP, 2 C,G, 40.000000,4968.000000, 0.007987,0.992013, 600 chr1 2033255 2033256 rs908742 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, maf-5-some-pop,maf-5-all-pops 600 chr1 2040762 2040763 rs4648805 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3710.000000,1298.000000, 0.740815,0.259185, maf-5-some-pop,maf-5-all-pops 600 chr1 2040897 2040898 rs4648807 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2532.000000,2476.000000, 0.505591,0.494409, maf-5-some-pop 600 chr1 2047583 2047584 rs3107146 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop,genotype-conflict 600 chr1 2056734 2056735 rs3107153 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 709.000000,4299.000000, 0.141573,0.858427, maf-5-some-pop 600 chr1 2061968 2061969 rs3107157 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops,genotype-conflict 600 chr1 2069680 2069681 rs3753242 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,microattr-tpa 600 chr1 2071737 2071738 rs3128298 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4641.000000,367.000000, 0.926717,0.073283, maf-5-some-pop 600 chr1 2074103 2074104 rs12026349 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 600 chr1 2075067 2075068 rs451061 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 600 chr1 2077408 2077409 rs385039 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,SHGC,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 600 chr1 2081641 2081642 rs3107126 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 781.000000,4227.000000,4227.000000,781.000000, 0.077975,0.422025,0.422025,0.077975, maf-5-some-pop 600 chr1 2082488 2082489 rs262669 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BROAD_DGAP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SEQUENOM,SHGC,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1605.000000,3403.000000,3403.000000,1605.000000, 0.160244,0.339756,0.339756,0.160244, maf-5-some-pop,maf-5-all-pops 600 chr1 2082565 2082566 rs2257182 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BROAD_DGAP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2598.000000,2410.000000,2410.000000,2598.000000, 0.259385,0.240615,0.240615,0.259385, maf-5-some-pop,maf-5-all-pops 600 chr1 2082813 2082814 rs262666 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 601 chr1 2104980 2104981 rs262641 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops 601 chr1 2105877 2105878 rs3128309 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 601 chr1 2106437 2106438 rs2292857 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,genotype-conflict 601 chr1 2110259 2110260 rs626479 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1128.000000,3880.000000, 0.225240,0.774760, maf-5-some-pop,genotype-conflict 601 chr1 2155868 2155869 rs262683 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 4 A,C,G,T, 332.000000,4676.000000,4676.000000,332.000000, 0.033147,0.466853,0.466853,0.033147, maf-5-some-pop,genotype-conflict 601 chr1 2156361 2156362 rs2460000 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1166.000000,3842.000000,3842.000000,1166.000000, 0.116414,0.383586,0.383586,0.116414, maf-5-some-pop,maf-5-all-pops 601 chr1 2167148 2167149 rs262680 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2343.000000,2665.000000,2665.000000,2343.000000, 0.233926,0.266074,0.266074,0.233926, maf-5-some-pop,maf-5-all-pops 601 chr1 2184854 2184855 rs12385717 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 601 chr1 2186219 2186220 rs16824948 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 601 chr1 2189579 2189580 rs12084736 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop 601 chr1 2205580 2205581 rs12045693 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2297.000000,2711.000000, 0.458666,0.541334, maf-5-some-pop,maf-5-all-pops,microattr-tpa 601 chr1 2215908 2215909 rs2643913 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3260.000000,1748.000000,1748.000000,3260.000000, 0.325479,0.174521,0.174521,0.325479, maf-5-some-pop,maf-5-all-pops 601 chr1 2223257 2223258 rs2132303 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop,genotype-conflict 601 chr1 2227421 2227422 rs2843163 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1958.000000,3050.000000,3050.000000,1958.000000, 0.195487,0.304513,0.304513,0.195487, maf-5-some-pop,maf-5-all-pops 602 chr1 2229446 2229447 rs2643888 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop 602 chr1 2229477 2229478 rs12562937 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4086.000000,922.000000, 0.815895,0.184105, maf-5-some-pop 602 chr1 2234250 2234251 rs1496555 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop,maf-5-all-pops 602 chr1 2251159 2251160 rs12082516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1800.000000,3208.000000, 0.359425,0.640575, maf-5-some-pop,maf-5-all-pops 602 chr1 2257862 2257863 rs2645092 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop,maf-5-all-pops 602 chr1 2269947 2269948 rs2843143 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 710.000000,4298.000000,4298.000000,710.000000, 0.070887,0.429113,0.429113,0.070887, maf-5-some-pop,maf-5-all-pops 602 chr1 2272063 2272064 rs12730391 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 602 chr1 2280422 2280423 rs2645072 0 + A A A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 602 chr1 2281725 2281726 rs7527871 0 + A A A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 602 chr1 2283116 2283117 rs4648831 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop,genotype-conflict 602 chr1 2283160 2283161 rs2840525 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop,maf-5-all-pops 602 chr1 2283312 2283313 rs2843130 0 - C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 17 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 602 chr1 2283895 2283896 rs2840528 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2145.000000,2863.000000, 0.428315,0.571685, maf-5-some-pop,microattr-tpa,genotype-conflict 602 chr1 2285413 2285414 rs2843129 0 - G G C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4425.000000,583.000000,583.000000,4425.000000, 0.441793,0.058207,0.058207,0.441793, maf-5-some-pop 602 chr1 2286407 2286408 rs2840531 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop 602 chr1 2299626 2299627 rs7545940 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1835.000000,3173.000000, 0.366414,0.633586, maf-5-some-pop,maf-5-all-pops 602 chr1 2301690 2301691 rs6665546 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 976.000000,4032.000000, 0.194888,0.805112, maf-5-some-pop,maf-5-all-pops,genotype-conflict 602 chr1 2302910 2302911 rs10910060 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop 602 chr1 2303511 2303512 rs10910061 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop 602 chr1 2306151 2306152 rs12031614 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3032.000000,1976.000000, 0.605431,0.394569, maf-5-some-pop,maf-5-all-pops,genotype-conflict 602 chr1 2307677 2307678 rs16825081 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 602 chr1 2308223 2308224 rs12404555 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 602 chr1 2309081 2309082 rs2843160 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2555.000000,2453.000000,2453.000000,2555.000000, 0.255092,0.244908,0.244908,0.255092, maf-5-some-pop 602 chr1 2320701 2320702 rs4648633 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 602 chr1 2325370 2325371 rs16825102 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop 602 chr1 2327074 2327075 rs3736330 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,YUSUKE, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 602 chr1 2327814 2327815 rs2840532 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2625.000000,2383.000000,2383.000000,2625.000000, 0.262081,0.237919,0.237919,0.262081, maf-5-some-pop,genotype-conflict 602 chr1 2328713 2328714 rs2645081 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop,maf-5-all-pops 602 chr1 2329563 2329564 rs41477744 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,JMKIDD_LAB, 2 A,G, 50.000000,4958.000000, 0.009984,0.990016, maf-5-some-pop 602 chr1 2329660 2329661 rs6698680 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 3263.000000,1745.000000, 0.651558,0.348442, maf-5-some-pop,maf-5-all-pops 602 chr1 2352279 2352280 rs2494591 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1059.000000,3949.000000,3949.000000,1059.000000, 0.105731,0.394269,0.394269,0.105731, maf-5-some-pop,maf-5-all-pops 602 chr1 2357809 2357810 rs12023660 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4191.000000,817.000000, 0.836861,0.163139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 603 chr1 2363326 2363327 rs2494640 0 - G G C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 603 chr1 2369497 2369498 rs4592207 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2644.000000,2364.000000, 0.527955,0.472045, maf-5-some-pop,maf-5-all-pops 603 chr1 2392647 2392648 rs2477686 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,microattr-tpa 603 chr1 2397173 2397174 rs1998759 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1529.000000,3479.000000,3479.000000,1529.000000, 0.152656,0.347344,0.347344,0.152656, maf-5-some-pop,maf-5-all-pops 603 chr1 2418624 2418625 rs7512269 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop 603 chr1 2418934 2418935 rs10910082 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 603 chr1 2430616 2430617 rs2296442 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1836.000000,3172.000000,3172.000000,1836.000000, 0.183307,0.316693,0.316693,0.183307, maf-5-some-pop,maf-5-all-pops,genotype-conflict 603 chr1 2449710 2449711 rs3122920 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 181.000000,4827.000000,4827.000000,181.000000, 0.018071,0.481929,0.481929,0.018071, maf-5-some-pop 603 chr1 2450393 2450394 rs2246732 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2682.000000,2326.000000,2326.000000,2682.000000, 0.267772,0.232228,0.232228,0.267772, maf-5-some-pop,maf-5-all-pops,genotype-conflict 603 chr1 2452568 2452569 rs2985862 0 - T T A/G genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 31 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 771.000000,4237.000000,4237.000000,771.000000, 0.076977,0.423023,0.423023,0.076977, maf-5-some-pop 603 chr1 2454929 2454930 rs2494624 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2455632 2455633 rs10910086 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 603 chr1 2455862 2455863 rs1980789 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 4809.000000,199.000000,199.000000,4809.000000, 0.480132,0.019868,0.019868,0.480132, maf-5-some-pop 603 chr1 2456202 2456203 rs3122922 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 631.000000,4377.000000,4377.000000,631.000000, 0.062999,0.437001,0.437001,0.062999, maf-5-some-pop 603 chr1 2473257 2473258 rs2495368 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4683.000000,325.000000,325.000000,4683.000000, 0.467552,0.032448,0.032448,0.467552, maf-5-some-pop 603 chr1 2482920 2482921 rs2147905 0 - T T A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1702.000000,3306.000000,3306.000000,1702.000000, 0.169928,0.330072,0.330072,0.169928, maf-5-some-pop,maf-5-all-pops 604 chr1 2501337 2501338 rs10797432 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2101.000000,2907.000000, 0.419529,0.580471, maf-5-some-pop,maf-5-all-pops,microattr-tpa 604 chr1 2505712 2505713 rs10910093 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 604 chr1 2513054 2513055 rs4486391 0 + A A A/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1734.000000,3274.000000, 0.346246,0.653754, maf-5-some-pop 604 chr1 2521429 2521430 rs10910097 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4217.000000,791.000000, 0.842053,0.157947, maf-5-some-pop,maf-5-all-pops,genotype-conflict 604 chr1 2533551 2533552 rs10910099 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2524.000000,2484.000000, 0.503994,0.496006, maf-5-some-pop,maf-5-all-pops,genotype-conflict 604 chr1 2546228 2546229 rs6684865 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2394.000000,2614.000000, 0.478035,0.521965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 604 chr1 2553623 2553624 rs3890745 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2581.000000,2427.000000,2427.000000,2581.000000, 0.257688,0.242312,0.242312,0.257688, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,microattr-tpa,genotype-conflict 604 chr1 2553757 2553758 rs4474198 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2323.000000,2685.000000, 0.463858,0.536142, maf-5-some-pop,maf-5-all-pops,genotype-conflict 605 chr1 2701815 2701816 rs1456462 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 605 chr1 2713326 2713327 rs2377041 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1492.000000,3516.000000,3516.000000,1492.000000, 0.148962,0.351038,0.351038,0.148962, maf-5-some-pop,maf-5-all-pops 605 chr1 2723344 2723345 rs4648360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3638.000000,1370.000000, 0.726438,0.273562, maf-5-some-pop,genotype-conflict 605 chr1 2723551 2723552 rs10909872 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,genotype-conflict 605 chr1 2725951 2725952 rs7538063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop,maf-5-all-pops 605 chr1 2735819 2735820 rs12565258 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 605 chr1 2749920 2749921 rs4648482 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1426.000000,3582.000000, 0.284744,0.715256, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2754405 2754406 rs729045 0 - A A C/T genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2576.000000,2432.000000,2432.000000,2576.000000, 0.257188,0.242812,0.242812,0.257188, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2754511 2754512 rs6680471 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop 606 chr1 2761374 2761375 rs12049543 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 606 chr1 2766970 2766971 rs4648515 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 606 chr1 2782592 2782593 rs12119163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops 606 chr1 2783039 2783040 rs4648402 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4962.000000,46.000000, 0.990815,0.009185, maf-5-some-pop 606 chr1 2786144 2786145 rs1563469 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop,maf-5-all-pops 606 chr1 2787706 2787707 rs897620 0 + C C A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 3 A,C,G, 2.000000,134.000000,4872.000000, 0.000399,0.026758,0.972843, maf-5-some-pop 606 chr1 2789107 2789108 rs10910019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop,maf-5-all-pops 606 chr1 2789905 2789906 rs2124661 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 606 chr1 2792800 2792801 rs16823103 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,genotype-conflict 606 chr1 2793231 2793232 rs12063033 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 606 chr1 2817420 2817421 rs2842910 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1663.000000,3345.000000, 0.332069,0.667931, maf-5-some-pop,maf-5-all-pops 606 chr1 2825366 2825367 rs897631 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1876.000000,3132.000000, 0.374601,0.625399, maf-5-some-pop,genotype-conflict 606 chr1 2826162 2826163 rs897632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop,maf-5-all-pops 606 chr1 2831368 2831369 rs2606408 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 606 chr1 2833159 2833160 rs1869971 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3393.000000,1615.000000, 0.677516,0.322484, maf-5-some-pop,maf-5-all-pops 606 chr1 2833331 2833332 rs7340016 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3645.000000,1363.000000, 0.727835,0.272165, maf-5-some-pop,maf-5-all-pops 606 chr1 2833742 2833743 rs1563468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2250.000000,2758.000000, 0.449281,0.550719, maf-5-some-pop 606 chr1 2841341 2841342 rs12058842 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 606 chr1 2841879 2841880 rs9782915 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2548.000000,2460.000000, 0.508786,0.491214, maf-5-some-pop,maf-5-all-pops 606 chr1 2844253 2844254 rs10752728 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2536.000000,2472.000000, 0.506390,0.493610, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2846273 2846274 rs897635 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2871.000000,2137.000000, 0.573283,0.426717, maf-5-some-pop,maf-5-all-pops 606 chr1 2851237 2851238 rs1869972 0 + G G A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2197.000000,2811.000000, 0.438698,0.561302, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2858408 2858409 rs16823232 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 606 chr1 2859723 2859724 rs2842909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,genotype-conflict 606 chr1 2865777 2865778 rs7548727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop 606 chr1 2865900 2865901 rs7541664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 606 chr1 2867147 2867148 rs2606414 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 606 chr1 2867960 2867961 rs2842933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1999.000000,3009.000000, 0.399161,0.600839, maf-5-some-pop,maf-5-all-pops 606 chr1 2878365 2878366 rs11583804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2069.000000,2939.000000, 0.413139,0.586861, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia 606 chr1 2879459 2879460 rs6659552 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop 607 chr1 2889147 2889148 rs4648444 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 2902127 2902128 rs1572657 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4148.000000,860.000000,860.000000,4148.000000, 0.414137,0.085863,0.085863,0.414137, maf-5-some-pop,microattr-tpa,genotype-conflict 607 chr1 2902226 2902227 rs16823022 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 G,T, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop 607 chr1 2904055 2904056 rs10797373 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2474.000000,2534.000000, 0.494010,0.505990, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 2905176 2905177 rs12089663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 607 chr1 2908387 2908388 rs10909855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3988.000000,1020.000000, 0.796326,0.203674, maf-5-some-pop 607 chr1 2908998 2908999 rs11811220 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4598.000000,410.000000, 0.918131,0.081869, maf-5-some-pop 607 chr1 2909370 2909371 rs17391750 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 607 chr1 2919941 2919942 rs12022429 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 743.000000,4265.000000, 0.148363,0.851637, maf-5-some-pop 607 chr1 2921859 2921860 rs16823335 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 607 chr1 2921908 2921909 rs6683516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 607 chr1 2922019 2922020 rs6680636 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4184.000000,824.000000, 0.835463,0.164537, maf-5-some-pop 607 chr1 2925521 2925522 rs946177 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 2926554 2926555 rs2027264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop,genotype-conflict 607 chr1 2931326 2931327 rs6691208 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops 607 chr1 2932445 2932446 rs16823350 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,genotype-conflict 607 chr1 2934311 2934312 rs16823352 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop,genotype-conflict 607 chr1 2936479 2936480 rs10752732 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop 607 chr1 2936869 2936870 rs10492936 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop 607 chr1 2937311 2937312 rs16823374 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 481.000000,4527.000000, 0.096046,0.903954, maf-5-some-pop,genotype-conflict 607 chr1 2938696 2938697 rs3795262 0 + T T A/C/G/T genomic single unknown 0 0 coding-synon exact 1 SingleClassQuadAllelic,InconsistentAlleles 21 1000GENOMES,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 3 A,G,T, 9.000000,1047.000000,3952.000000, 0.001797,0.209065,0.789138, maf-5-some-pop,maf-5-all-pops 607 chr1 2946725 2946726 rs12038530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2947908 2947909 rs12039548 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2948019 2948020 rs12034573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,maf-5-all-pops 607 chr1 2950066 2950067 rs34408665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,maf-5-all-pops 607 chr1 2950333 2950334 rs6661908 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 607 chr1 2950369 2950370 rs41334845 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 4 A,C,G,T, 246.000000,4762.000000,4762.000000,246.000000, 0.024561,0.475439,0.475439,0.024561, maf-5-some-pop 607 chr1 2951833 2951834 rs10489588 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 1047.000000,3961.000000,3961.000000,1047.000000, 0.104533,0.395467,0.395467,0.104533, maf-5-some-pop,maf-5-all-pops 607 chr1 2952839 2952840 rs9661525 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 992.000000,4016.000000, 0.198083,0.801917, maf-5-some-pop,maf-5-all-pops 607 chr1 2956665 2956666 rs2993510 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 607 chr1 2957599 2957600 rs12409277 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,maf-5-all-pops 607 chr1 2959609 2959610 rs6692292 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops 607 chr1 2970929 2970930 rs12060482 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 607 chr1 2973321 2973322 rs2993480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops 607 chr1 2974211 2974212 rs12057171 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 607 chr1 2981840 2981841 rs6665853 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1056.000000,3952.000000, 0.210863,0.789137, maf-5-some-pop 607 chr1 2982620 2982621 rs12070295 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop 607 chr1 2994716 2994717 rs4648451 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,genotype-conflict 607 chr1 2996195 2996196 rs7525173 0 + C C C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1871.000000,3137.000000, 0.373602,0.626398, maf-5-some-pop,maf-5-all-pops 607 chr1 2996601 2996602 rs1569419 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1187.000000,3821.000000,3821.000000,1187.000000, 0.118510,0.381490,0.381490,0.118510, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 3000923 3000924 rs6695131 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2864.000000,2144.000000, 0.571885,0.428115, maf-5-some-pop,maf-5-all-pops,genotype-conflict 607 chr1 3002071 3002072 rs2981884 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4815.000000,193.000000,193.000000,4815.000000, 0.480731,0.019269,0.019269,0.480731, maf-5-some-pop 607 chr1 3002313 3002314 rs2742680 0 - C C C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,TISHKOFF, 4 A,C,G,T, 66.000000,4942.000000,4942.000000,66.000000, 0.006589,0.493411,0.493411,0.006589, maf-5-some-pop 607 chr1 3004356 3004357 rs2981881 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3851.000000,1157.000000,1157.000000,3851.000000, 0.384485,0.115515,0.115515,0.384485, maf-5-some-pop 607 chr1 3009968 3009969 rs7543737 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2268.000000,2740.000000, 0.452875,0.547125, maf-5-some-pop,maf-5-all-pops 607 chr1 3010585 3010586 rs2981875 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM, 4 A,C,G,T, 101.000000,4907.000000,4907.000000,101.000000, 0.010084,0.489916,0.489916,0.010084, maf-5-some-pop 608 chr1 3025711 3025712 rs4648453 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 G,T, 4441.000000,567.000000, 0.886781,0.113219, maf-5-some-pop,genotype-conflict 608 chr1 3026099 3026100 rs12135664 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop 608 chr1 3026259 3026260 rs2981868 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3038529 3038530 rs6704012 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 608 chr1 3044180 3044181 rs2817174 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3207.000000,1801.000000, 0.640375,0.359625, maf-5-some-pop,genotype-conflict 608 chr1 3044976 3044977 rs6698974 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 608 chr1 3047251 3047252 rs2817178 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop 608 chr1 3049712 3049713 rs10909882 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 711.000000,4297.000000, 0.141973,0.858027, maf-5-some-pop,genotype-conflict 608 chr1 3050593 3050594 rs12120879 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4142.000000,866.000000, 0.827077,0.172923, maf-5-some-pop,maf-5-all-pops 608 chr1 3054105 3054106 rs2235176 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2397.000000,2611.000000,2611.000000,2397.000000, 0.239317,0.260683,0.260683,0.239317, maf-5-some-pop,maf-5-all-pops 608 chr1 3058369 3058370 rs2817184 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1502.000000,3506.000000, 0.299920,0.700080, maf-5-some-pop 608 chr1 3068645 3068646 rs35005996 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop 608 chr1 3080018 3080019 rs2742673 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3353.000000,1655.000000,1655.000000,3353.000000, 0.334764,0.165236,0.165236,0.334764, maf-5-some-pop,maf-5-all-pops 608 chr1 3080854 3080855 rs1798246 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2497.000000,2511.000000,2511.000000,2497.000000, 0.249301,0.250699,0.250699,0.249301, maf-5-some-pop,maf-5-all-pops,genotype-conflict 608 chr1 3080939 3080940 rs1736522 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3089848 3089849 rs17390062 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,genotype-conflict 608 chr1 3094830 3094831 rs17390167 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 608 chr1 3095125 3095126 rs2376495 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 608 chr1 3101352 3101353 rs2651929 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2726.000000,2282.000000,2282.000000,2726.000000, 0.272165,0.227835,0.227835,0.272165, maf-5-some-pop,maf-5-all-pops 608 chr1 3101761 3101762 rs2651927 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3324.000000,1684.000000,1684.000000,3324.000000, 0.331869,0.168131,0.168131,0.331869, maf-5-some-pop,maf-5-all-pops,genotype-conflict 608 chr1 3101862 3101863 rs2651925 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 608 chr1 3103311 3103312 rs12135062 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop,maf-5-all-pops 608 chr1 3108516 3108517 rs6685614 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2783.000000,2225.000000, 0.555711,0.444289, maf-5-some-pop,maf-5-all-pops,genotype-conflict 608 chr1 3110734 3110735 rs2651912 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1367.000000,3641.000000,3641.000000,1367.000000, 0.136482,0.363518,0.363518,0.136482, maf-5-some-pop 608 chr1 3112416 3112417 rs10797383 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2321.000000,2687.000000, 0.463458,0.536542, maf-5-some-pop,maf-5-all-pops 608 chr1 3112978 3112979 rs9659245 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 608 chr1 3114951 3114952 rs16823459 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,genotype-conflict 608 chr1 3119488 3119489 rs11577655 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 608 chr1 3119728 3119729 rs4308918 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 814.000000,4194.000000, 0.162540,0.837460, maf-5-some-pop 608 chr1 3123740 3123741 rs7517083 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 608 chr1 3124154 3124155 rs13328662 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop 608 chr1 3127136 3127137 rs10492941 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 663.000000,4345.000000,4345.000000,663.000000, 0.066194,0.433806,0.433806,0.066194, maf-5-some-pop 608 chr1 3127537 3127538 rs3753758 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1004.000000,4004.000000,4004.000000,1004.000000, 0.100240,0.399760,0.399760,0.100240, maf-5-some-pop 608 chr1 3127924 3127925 rs6424068 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop,maf-5-all-pops 608 chr1 3135174 3135175 rs2651906 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 367.000000,4641.000000,4641.000000,367.000000, 0.036641,0.463359,0.463359,0.036641, maf-5-some-pop 608 chr1 3136857 3136858 rs2651898 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4600.000000,408.000000,408.000000,4600.000000, 0.459265,0.040735,0.040735,0.459265, maf-5-some-pop 608 chr1 3137912 3137913 rs16823529 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop,genotype-conflict 608 chr1 3137955 3137956 rs12075867 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop,genotype-conflict 608 chr1 3138135 3138136 rs2817148 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop 608 chr1 3139915 3139916 rs2651891 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 828.000000,4180.000000,4180.000000,828.000000, 0.082668,0.417332,0.417332,0.082668, maf-5-some-pop 608 chr1 3141615 3141616 rs16823551 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 609 chr1 3146496 3146497 rs10157420 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 609 chr1 3147029 3147030 rs6424069 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop 609 chr1 3147824 3147825 rs10797384 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3057.000000,1951.000000, 0.610423,0.389577, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3148696 3148697 rs16823576 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 609 chr1 3152967 3152968 rs2455109 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3165266 3165267 rs4648462 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,C, 4422.000000,586.000000, 0.882987,0.117013, maf-5-some-pop,genotype-conflict 609 chr1 3172701 3172702 rs17398063 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3175637 3175638 rs12045829 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 609 chr1 3177479 3177480 rs3002685 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3858.000000,1150.000000, 0.770367,0.229633, maf-5-some-pop,genotype-conflict 609 chr1 3188504 3188505 rs2455124 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop 609 chr1 3197479 3197480 rs16823783 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4524.000000,484.000000, 0.903355,0.096645, maf-5-some-pop,genotype-conflict 609 chr1 3197746 3197747 rs10492940 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 300.000000,4708.000000,4708.000000,300.000000, 0.029952,0.470048,0.470048,0.029952, maf-5-some-pop 609 chr1 3199483 3199484 rs905135 0 - A A A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3572.000000,1436.000000,1436.000000,3572.000000, 0.356629,0.143371,0.143371,0.356629, maf-5-some-pop 609 chr1 3200336 3200337 rs13374875 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 609 chr1 3202444 3202445 rs2500300 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 454.000000,4554.000000,4554.000000,454.000000, 0.045327,0.454673,0.454673,0.045327, maf-5-some-pop 609 chr1 3208374 3208375 rs10909918 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2862.000000,2146.000000, 0.571486,0.428514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3212427 3212428 rs12037974 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop,maf-5-all-pops 609 chr1 3212945 3212946 rs2500289 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2892.000000,2116.000000,2116.000000,2892.000000, 0.288738,0.211262,0.211262,0.288738, maf-5-some-pop,maf-5-all-pops 609 chr1 3214731 3214732 rs2455144 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2405.000000,2603.000000,2603.000000,2405.000000, 0.240116,0.259884,0.259884,0.240116, maf-5-some-pop,maf-5-all-pops 609 chr1 3218328 3218329 rs2455136 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3218922 3218923 rs2500283 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3220100 3220101 rs6673393 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop 609 chr1 3220159 3220160 rs6670518 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3221370 3221371 rs7517281 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop,maf-5-all-pops 609 chr1 3221620 3221621 rs4648378 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2880.000000,2128.000000, 0.575080,0.424920, maf-5-some-pop,maf-5-all-pops 609 chr1 3222112 3222113 rs7534363 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop 609 chr1 3222333 3222334 rs7534029 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3222469 3222470 rs11808276 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop,maf-5-all-pops 609 chr1 3222626 3222627 rs10909924 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop,maf-5-all-pops 609 chr1 3225334 3225335 rs7526595 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 609 chr1 3225756 3225757 rs12086132 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop,maf-5-all-pops 609 chr1 3225939 3225940 rs2500278 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2227.000000,2781.000000,2781.000000,2227.000000, 0.222344,0.277656,0.277656,0.222344, maf-5-some-pop,maf-5-all-pops 609 chr1 3226615 3226616 rs10909927 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3226832 3226833 rs12567158 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop,maf-5-all-pops 609 chr1 3229257 3229258 rs12409315 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop,maf-5-all-pops 609 chr1 3235555 3235556 rs12043519 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,genotype-conflict 609 chr1 3236040 3236041 rs2483266 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3237173 3237174 rs6687835 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3028.000000,1980.000000, 0.604633,0.395367, maf-5-some-pop,maf-5-all-pops 609 chr1 3237208 3237209 rs2500274 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 4 A,C,G,T, 4714.000000,294.000000,294.000000,4714.000000, 0.470647,0.029353,0.029353,0.470647, maf-5-some-pop 609 chr1 3237551 3237552 rs6690558 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,genotype-conflict 609 chr1 3241134 3241135 rs1108600 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 869.000000,4139.000000,4139.000000,869.000000, 0.086761,0.413239,0.413239,0.086761, maf-5-some-pop,genotype-conflict 609 chr1 3252006 3252007 rs4648478 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 609 chr1 3252103 3252104 rs2483278 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1164.000000,3844.000000, 0.232428,0.767572, maf-5-some-pop,maf-5-all-pops 609 chr1 3253940 3253941 rs7552331 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1856.000000,3152.000000, 0.370607,0.629393, maf-5-some-pop,maf-5-all-pops 609 chr1 3254099 3254100 rs16824328 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop 609 chr1 3255538 3255539 rs2483280 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1288.000000,3720.000000, 0.257188,0.742812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3256107 3256108 rs1999527 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2268.000000,2740.000000,2740.000000,2268.000000, 0.226438,0.273562,0.273562,0.226438, maf-5-some-pop,maf-5-all-pops 609 chr1 3256201 3256202 rs16824338 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 609 chr1 3257058 3257059 rs2255212 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1411.000000,3597.000000,3597.000000,1411.000000, 0.140875,0.359125,0.359125,0.140875, maf-5-some-pop,maf-5-all-pops,genotype-conflict 609 chr1 3259676 3259677 rs2483287 0 + C C C/T genomic single unknown 0 0 intron exact 1 MixedObserved 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3365.000000,1643.000000, 0.671925,0.328075, maf-5-some-pop,maf-5-all-pops 609 chr1 3261681 3261682 rs4415513 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2331.000000,2677.000000, 0.465455,0.534545, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3278958 3278959 rs17399569 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop,genotype-conflict 610 chr1 3279323 3279324 rs7524171 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop,maf-5-all-pops 610 chr1 3283527 3283528 rs4648485 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2516.000000,2492.000000, 0.502396,0.497604, maf-5-some-pop,maf-5-all-pops 610 chr1 3285149 3285150 rs4648486 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2624.000000,2384.000000, 0.523962,0.476038, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3285627 3285628 rs6424073 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2465.000000,2543.000000, 0.492212,0.507788, maf-5-some-pop,maf-5-all-pops 610 chr1 3286252 3286253 rs16823663 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop 610 chr1 3288536 3288537 rs16823665 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 610 chr1 3294421 3294422 rs2493310 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3782.000000,1226.000000,1226.000000,3782.000000, 0.377596,0.122404,0.122404,0.377596, maf-5-some-pop 610 chr1 3294971 3294972 rs1538693 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3296.000000,1712.000000,1712.000000,3296.000000, 0.329073,0.170927,0.170927,0.329073, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3297385 3297386 rs11584967 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 610 chr1 3297637 3297638 rs12085231 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,C, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop,maf-5-all-pops 610 chr1 3301129 3301130 rs868689 0 + T T G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3302870 3302871 rs10492939 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1694.000000,3314.000000,3314.000000,1694.000000, 0.169129,0.330871,0.330871,0.169129, maf-5-some-pop 610 chr1 3308033 3308034 rs2493275 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 321.000000,4687.000000,4687.000000,321.000000, 0.032049,0.467951,0.467951,0.032049, maf-5-some-pop,maf-5-all-pops 610 chr1 3314595 3314596 rs17822581 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4531.000000,477.000000, 0.904752,0.095248, maf-5-some-pop,genotype-conflict 610 chr1 3316755 3316756 rs10909940 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop,genotype-conflict 610 chr1 3318713 3318714 rs5024246 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 610 chr1 3325036 3325037 rs2483225 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 610 chr1 3326093 3326094 rs36070715 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 610 chr1 3326795 3326796 rs6670123 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop,genotype-conflict 610 chr1 3333594 3333595 rs2493285 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 811.000000,4197.000000,4197.000000,811.000000, 0.080970,0.419030,0.419030,0.080970, maf-5-some-pop,maf-5-all-pops 610 chr1 3337551 3337552 rs2493283 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4665.000000,343.000000,343.000000,4665.000000, 0.465755,0.034245,0.034245,0.465755, maf-5-some-pop 610 chr1 3339338 3339339 rs10492937 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 501.000000,4507.000000,4507.000000,501.000000, 0.050020,0.449980,0.449980,0.050020, maf-5-some-pop 610 chr1 3340234 3340235 rs17400178 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 610 chr1 3340854 3340855 rs4648500 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2673.000000,2335.000000, 0.533746,0.466254, maf-5-some-pop 610 chr1 3344214 3344215 rs2483239 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3756.000000,1252.000000, 0.750000,0.250000, maf-5-some-pop 610 chr1 3345144 3345145 rs2483242 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops 610 chr1 3346347 3346348 rs2493277 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3353948 3353949 rs2493264 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 487.000000,4521.000000,4521.000000,487.000000, 0.048622,0.451378,0.451378,0.048622, maf-5-some-pop 610 chr1 3366492 3366493 rs2096102 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1567.000000,3441.000000, 0.312899,0.687101, maf-5-some-pop,maf-5-all-pops 610 chr1 3368130 3368131 rs4648501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3161.000000,1847.000000, 0.631190,0.368810, maf-5-some-pop,maf-5-all-pops 610 chr1 3368142 3368143 rs2487670 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 1319.000000,3689.000000,3689.000000,1319.000000, 0.131689,0.368311,0.368311,0.131689, maf-5-some-pop,maf-5-all-pops 610 chr1 3377342 3377343 rs2487681 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3433.000000,1575.000000,1575.000000,3433.000000, 0.342752,0.157248,0.157248,0.342752, maf-5-some-pop,maf-5-all-pops,genotype-conflict 610 chr1 3377441 3377442 rs2487680 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 4524.000000,484.000000,484.000000,4524.000000, 0.451677,0.048323,0.048323,0.451677, maf-5-some-pop,genotype-conflict 610 chr1 3380056 3380057 rs3806164 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,CORNELL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 437.000000,4571.000000,4571.000000,437.000000, 0.043630,0.456370,0.456370,0.043630, maf-5-some-pop 610 chr1 3394249 3394250 rs10909948 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1583.000000,3425.000000, 0.316094,0.683906, maf-5-some-pop,maf-5-all-pops 610 chr1 3404226 3404227 rs2821041 0 - C C A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 MixedObserved,InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1566.000000,3442.000000,3442.000000,1566.000000, 0.156350,0.343650,0.343650,0.156350, maf-5-some-pop,maf-5-all-pops 610 chr1 3405295 3405296 rs4648505 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop,maf-5-all-pops 610 chr1 3406790 3406791 rs2821040 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3377.000000,1631.000000,1631.000000,3377.000000, 0.337161,0.162839,0.162839,0.337161, maf-5-some-pop 611 chr1 3420134 3420135 rs41495053 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,JMKIDD_LAB, 4 A,C,G,T, 75.000000,4933.000000,4933.000000,75.000000, 0.007488,0.492512,0.492512,0.007488, 611 chr1 3421585 3421586 rs6669870 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 611 chr1 3441381 3441382 rs1896 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 2 C,T, 3829.000000,1179.000000, 0.764577,0.235423, maf-5-some-pop,maf-5-all-pops,genotype-conflict 611 chr1 3446812 3446813 rs4648392 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 611 chr1 3474776 3474777 rs13375075 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,genotype-conflict 611 chr1 3475200 3475201 rs13374641 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 611 chr1 3476278 3476279 rs2794345 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 611 chr1 3480148 3480149 rs10909969 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,genotype-conflict 611 chr1 3494078 3494079 rs12080677 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop 611 chr1 3497924 3497925 rs2821048 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 859.000000,4149.000000,4149.000000,859.000000, 0.085763,0.414237,0.414237,0.085763, maf-5-some-pop,maf-5-all-pops 611 chr1 3499066 3499067 rs10909974 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 611 chr1 3504072 3504073 rs12139206 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops,genotype-conflict 611 chr1 3512340 3512341 rs2794327 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 611 chr1 3512515 3512516 rs2821025 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 447.000000,4561.000000,4561.000000,447.000000, 0.044629,0.455371,0.455371,0.044629, maf-5-some-pop,genotype-conflict 611 chr1 3538500 3538501 rs4364818 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop,maf-5-all-pops 612 chr1 3539081 3539082 rs10909989 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop 612 chr1 3539480 3539481 rs10909990 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop 612 chr1 3544345 3544346 rs4276857 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3545492 3545493 rs4512587 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 612 chr1 3545611 3545612 rs1128474 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3981.000000,1027.000000, 0.794928,0.205072, maf-5-some-pop 612 chr1 3548831 3548832 rs2760320 0 - G G C/G genomic single unknown 0 0 intron,missense exact 1 15 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3554588 3554589 rs10909998 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,genotype-conflict 612 chr1 3554623 3554624 rs2760319 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 694.000000,4314.000000,4314.000000,694.000000, 0.069289,0.430711,0.430711,0.069289, maf-5-some-pop,genotype-conflict 612 chr1 3558261 3558262 rs7519550 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 612 chr1 3575832 3575833 rs2208993 0 - C C A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 8.000000,5000.000000,5000.000000,8.000000, 0.000799,0.499201,0.499201,0.000799, maf-5-some-pop,maf-5-all-pops 612 chr1 3575928 3575929 rs10910003 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop 612 chr1 3576196 3576197 rs10910004 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3577320 3577321 rs4648545 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 612 chr1 3581960 3581961 rs874532 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3586249 3586250 rs732901 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4581.000000,427.000000, 0.914736,0.085264, maf-5-some-pop 612 chr1 3586449 3586450 rs732903 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 612 chr1 3587504 3587505 rs3765696 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 481.000000,4527.000000, 0.096046,0.903954, maf-5-some-pop,genotype-conflict 612 chr1 3591447 3591448 rs12027041 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1770.000000,3238.000000, 0.353435,0.646565, maf-5-some-pop,maf-5-all-pops 612 chr1 3607519 3607520 rs3765730 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop 612 chr1 3608593 3608594 rs751035 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 612 chr1 3620179 3620180 rs17379833 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3520.000000,1488.000000, 0.702875,0.297125, maf-5-some-pop,genotype-conflict 612 chr1 3622305 3622306 rs3765753 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2785.000000,2223.000000, 0.556110,0.443890, maf-5-some-pop,maf-5-all-pops 612 chr1 3628676 3628677 rs6424090 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1607.000000,3401.000000, 0.320887,0.679113, maf-5-some-pop 612 chr1 3648267 3648268 rs6664760 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop 612 chr1 3648344 3648345 rs6695978 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop,genotype-conflict 612 chr1 3652616 3652617 rs1047928 0 - G G C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 12 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,LEE,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3654594 3654595 rs7514979 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 612 chr1 3655535 3655536 rs3903158 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,genotype-conflict 612 chr1 3665866 3665867 rs12120656 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops,genotype-conflict 612 chr1 3668752 3668753 rs12128253 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop 613 chr1 3671026 3671027 rs1181889 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 4510.000000,498.000000,498.000000,4510.000000, 0.450280,0.049720,0.049720,0.450280, maf-5-some-pop,genotype-conflict 613 chr1 3676597 3676598 rs1181884 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4534.000000,474.000000,474.000000,4534.000000, 0.452676,0.047324,0.047324,0.452676, maf-5-some-pop 613 chr1 3680728 3680729 rs1181877 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2076.000000,2932.000000,2932.000000,2076.000000, 0.207268,0.292732,0.292732,0.207268, maf-5-some-pop,maf-5-all-pops 613 chr1 3681830 3681831 rs1181875 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3597.000000,1411.000000,1411.000000,3597.000000, 0.359125,0.140875,0.140875,0.359125, maf-5-some-pop,maf-5-all-pops 613 chr1 3682069 3682070 rs1181874 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3483.000000,1525.000000,1525.000000,3483.000000, 0.347744,0.152256,0.152256,0.347744, maf-5-some-pop 613 chr1 3684184 3684185 rs10910025 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop,genotype-conflict 613 chr1 3686317 3686318 rs2275837 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE, 4 A,C,G,T, 174.000000,4834.000000,4834.000000,174.000000, 0.017372,0.482628,0.482628,0.017372, maf-5-some-pop 613 chr1 3694646 3694647 rs1891937 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 369.000000,4639.000000,4639.000000,369.000000, 0.036841,0.463159,0.463159,0.036841, maf-5-some-pop,genotype-conflict 613 chr1 3695110 3695111 rs2887275 0 - G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 613 chr1 3695999 3696000 rs2799182 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2634.000000,2374.000000,2374.000000,2634.000000, 0.262979,0.237021,0.237021,0.262979, maf-5-some-pop,maf-5-all-pops 613 chr1 3696355 3696356 rs12061931 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4671.000000,337.000000, 0.932708,0.067292, maf-5-some-pop,maf-5-all-pops 613 chr1 3696491 3696492 rs17411279 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,genotype-conflict 613 chr1 3696535 3696536 rs3737593 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop 613 chr1 3696638 3696639 rs16824088 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 613 chr1 3698946 3698947 rs12122058 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 613 chr1 3700215 3700216 rs12563491 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,genotype-conflict 613 chr1 3705225 3705226 rs9424283 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,genotype-conflict 613 chr1 3705984 3705985 rs6692872 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 613 chr1 3714032 3714033 rs7543006 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3796.000000,1212.000000, 0.757987,0.242013, maf-5-some-pop 613 chr1 3717403 3717404 rs12403561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop 613 chr1 3719056 3719057 rs7535775 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3335.000000,1673.000000, 0.665935,0.334065, maf-5-some-pop,maf-5-all-pops 613 chr1 3720964 3720965 rs2154068 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1548.000000,3460.000000,3460.000000,1548.000000, 0.154553,0.345447,0.345447,0.154553, maf-5-some-pop,maf-5-all-pops 613 chr1 3726325 3726326 rs10752721 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2068.000000,2940.000000, 0.412939,0.587061, maf-5-some-pop,maf-5-all-pops 613 chr1 3730434 3730435 rs6695834 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3267.000000,1741.000000, 0.652356,0.347644, maf-5-some-pop,maf-5-all-pops 613 chr1 3732638 3732639 rs6702916 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3288.000000,1720.000000, 0.656550,0.343450, maf-5-some-pop 613 chr1 3732706 3732707 rs6702935 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3287.000000,1721.000000, 0.656350,0.343650, maf-5-some-pop 613 chr1 3732781 3732782 rs6703035 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop 613 chr1 3733160 3733161 rs11809965 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 613 chr1 3736318 3736319 rs9424303 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1551.000000,3457.000000, 0.309704,0.690296, maf-5-some-pop,maf-5-all-pops 613 chr1 3742256 3742257 rs12759497 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop 613 chr1 3743318 3743319 rs6663840 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops 613 chr1 3743390 3743391 rs6688969 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops,genotype-conflict 613 chr1 3743702 3743703 rs16824152 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 613 chr1 3744083 3744084 rs9424310 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2851.000000,2157.000000, 0.569289,0.430711, maf-5-some-pop,maf-5-all-pops 613 chr1 3744260 3744261 rs7545274 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops,genotype-conflict 613 chr1 3745923 3745924 rs2275831 0 - G G C/T genomic single unknown 0 0 missense exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1054.000000,3954.000000,3954.000000,1054.000000, 0.105232,0.394768,0.394768,0.105232, maf-5-some-pop,maf-5-all-pops 613 chr1 3746709 3746710 rs17403773 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 613 chr1 3747602 3747603 rs6413779 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 613 chr1 3751928 3751929 rs12093010 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,genotype-conflict 613 chr1 3753812 3753813 rs12084604 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,TISHKOFF, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 613 chr1 3755917 3755918 rs41450948 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 4 1000GENOMES,AFFY,AFFY_GWHS,TISHKOFF, 4 A,C,G,T, 4942.000000,66.000000,66.000000,4942.000000, 0.493411,0.006589,0.006589,0.493411, maf-5-some-pop,maf-5-all-pops 613 chr1 3756073 3756074 rs2298225 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 173.000000,4835.000000,4835.000000,173.000000, 0.017272,0.482728,0.482728,0.017272, maf-5-some-pop 613 chr1 3756154 3756155 rs2298224 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE, 4 A,C,G,T, 4832.000000,176.000000,176.000000,4832.000000, 0.482428,0.017572,0.017572,0.482428, maf-5-some-pop,genotype-conflict 613 chr1 3762888 3762889 rs4411083 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop 613 chr1 3763163 3763164 rs12060299 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 613 chr1 3763566 3763567 rs10909802 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 613 chr1 3766239 3766240 rs16824230 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop,genotype-conflict 613 chr1 3766285 3766286 rs17404435 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 2815.000000,2193.000000, 0.562101,0.437899, maf-5-some-pop,maf-5-all-pops 613 chr1 3766440 3766441 rs6683156 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,genotype-conflict 613 chr1 3769230 3769231 rs6657021 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 613 chr1 3769261 3769262 rs4507956 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops 613 chr1 3770928 3770929 rs10909804 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop,genotype-conflict 613 chr1 3771347 3771348 rs4648424 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3224.000000,1784.000000, 0.643770,0.356230, maf-5-some-pop 613 chr1 3772358 3772359 rs4564078 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 613 chr1 3786523 3786524 rs10909812 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4974.000000,34.000000, 0.993211,0.006789, 613 chr1 3792800 3792801 rs12734459 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4218.000000,790.000000, 0.842252,0.157748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 613 chr1 3794272 3794273 rs12132240 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4159.000000,849.000000, 0.830471,0.169529, maf-5-some-pop 614 chr1 3801827 3801828 rs10909818 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 469.000000,4539.000000, 0.093650,0.906350, maf-5-some-pop 614 chr1 3805097 3805098 rs7530189 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop 614 chr1 3805254 3805255 rs7544191 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop 614 chr1 3811789 3811790 rs12085743 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 614 chr1 3812847 3812848 rs10797353 0 + C C A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 3 A,C,G, 57.000000,1621.000000,3330.000000, 0.011382,0.323682,0.664936, maf-5-some-pop,maf-5-all-pops,genotype-conflict 614 chr1 3822702 3822703 rs10909830 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3533.000000,1475.000000, 0.705471,0.294529, maf-5-some-pop,maf-5-all-pops 615 chr1 3999591 3999592 rs12032899 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 615 chr1 3999636 3999637 rs4654522 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4002831 4002832 rs12724233 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1120.000000,3888.000000, 0.223642,0.776358, maf-5-some-pop 615 chr1 4003893 4003894 rs12079672 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 615 chr1 4004249 4004250 rs11583257 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3471.000000,1537.000000, 0.693091,0.306909, maf-5-some-pop,maf-5-all-pops 615 chr1 4006059 4006060 rs7548668 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2109.000000,2899.000000, 0.421126,0.578874, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4007109 4007110 rs7519458 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2605.000000,2403.000000, 0.520168,0.479832, maf-5-some-pop,maf-5-all-pops 615 chr1 4007557 4007558 rs10737395 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,C, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 615 chr1 4008336 4008337 rs10915358 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4011638 4011639 rs10753364 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 669.000000,4339.000000, 0.133586,0.866414, maf-5-some-pop 615 chr1 4012232 4012233 rs10915427 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 615 chr1 4015381 4015382 rs6681347 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1329.000000,3679.000000, 0.265375,0.734625, maf-5-some-pop,maf-5-all-pops 615 chr1 4022243 4022244 rs9426475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 885.000000,4123.000000, 0.176717,0.823283, maf-5-some-pop,genotype-conflict 615 chr1 4022464 4022465 rs10915469 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 615 chr1 4026067 4026068 rs12031275 0 + G G A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 3 A,G,T, 2263.000000,2743.000000,2.000000, 0.451877,0.547724,0.000399, maf-5-some-pop,maf-5-all-pops 615 chr1 4026727 4026728 rs7410846 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 879.000000,4129.000000, 0.175519,0.824481, maf-5-some-pop 615 chr1 4027589 4027590 rs6693909 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2244.000000,2764.000000, 0.448083,0.551917, maf-5-some-pop,maf-5-all-pops 615 chr1 4028281 4028282 rs4654521 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2746.000000,2262.000000, 0.548323,0.451677, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4028923 4028924 rs10915490 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop 615 chr1 4029732 4029733 rs10915495 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1051.000000,3957.000000, 0.209864,0.790136, maf-5-some-pop 615 chr1 4031025 4031026 rs10915497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 615 chr1 4031078 4031079 rs10915498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 615 chr1 4031326 4031327 rs3935162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop,genotype-conflict 615 chr1 4034096 4034097 rs12031557 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop 615 chr1 4036194 4036195 rs10753378 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4279.000000,729.000000, 0.854433,0.145567, maf-5-some-pop 615 chr1 4039144 4039145 rs4654428 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1902.000000,3106.000000, 0.379792,0.620208, maf-5-some-pop,maf-5-all-pops 615 chr1 4039439 4039440 rs12758410 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 615 chr1 4039832 4039833 rs11587314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops,genotype-conflict 615 chr1 4040154 4040155 rs4654525 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop 615 chr1 4054066 4054067 rs6691155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 615 chr1 4055279 4055280 rs7413013 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 615 chr1 4055626 4055627 rs9426501 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4409.000000,599.000000, 0.880391,0.119609, maf-5-some-pop 615 chr1 4057401 4057402 rs12733769 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 616 chr1 4073063 4073064 rs12023372 0 + G G C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 3 C,G,T, 1102.000000,3857.000000,49.000000, 0.220048,0.770168,0.009784, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4078089 4078090 rs4654604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 616 chr1 4078447 4078448 rs4129100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 616 chr1 4078775 4078776 rs16840634 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 616 chr1 4080763 4080764 rs4323679 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2542.000000,2466.000000, 0.507588,0.492412, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4080779 4080780 rs4440829 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1233.000000,3775.000000, 0.246206,0.753794, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4082726 4082727 rs12025543 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,C, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4083030 4083031 rs12023925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,genotype-conflict 616 chr1 4085900 4085901 rs4654611 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop 616 chr1 4086826 4086827 rs4478781 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 904.000000,4104.000000,4104.000000,904.000000, 0.090256,0.409744,0.409744,0.090256, maf-5-some-pop 616 chr1 4088338 4088339 rs3813810 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1086.000000,3922.000000,3922.000000,1086.000000, 0.108427,0.391573,0.391573,0.108427, maf-5-some-pop 616 chr1 4088406 4088407 rs3829818 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4089258 4089259 rs12062024 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop 616 chr1 4089612 4089613 rs12080516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, maf-5-some-pop 616 chr1 4092903 4092904 rs10915657 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1312.000000,3696.000000, 0.261981,0.738019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4095094 4095095 rs4313364 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,SC_JCM,SSMP, 4 A,C,G,T, 90.000000,4918.000000,4918.000000,90.000000, 0.008986,0.491014,0.491014,0.008986, maf-5-some-pop 616 chr1 4095749 4095750 rs12409038 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 616 chr1 4097287 4097288 rs4292923 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3882.000000,1126.000000,1126.000000,3882.000000, 0.387580,0.112420,0.112420,0.387580, maf-5-some-pop 616 chr1 4111740 4111741 rs4553153 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop,maf-5-all-pops 616 chr1 4113095 4113096 rs4266850 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 616 chr1 4115643 4115644 rs4495664 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 4 A,C,G,T, 115.000000,4893.000000,4893.000000,115.000000, 0.011482,0.488518,0.488518,0.011482, 616 chr1 4116603 4116604 rs3856168 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 616 chr1 4117553 4117554 rs10915360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop 616 chr1 4119421 4119422 rs10915366 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 616 chr1 4119661 4119662 rs9792946 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop 616 chr1 4120555 4120556 rs4575054 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 616 chr1 4120897 4120898 rs4233258 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 616 chr1 4130683 4130684 rs4391636 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop,genotype-conflict 616 chr1 4131248 4131249 rs7537141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4131680 4131681 rs4381154 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 616 chr1 4132017 4132018 rs9628649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,maf-5-all-pops 616 chr1 4132125 4132126 rs9628650 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,genotype-conflict 616 chr1 4132776 4132777 rs7538658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,genotype-conflict 616 chr1 4132881 4132882 rs7529853 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 2413.000000,2595.000000, 0.481829,0.518171, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4133240 4133241 rs12021796 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1706.000000,3302.000000, 0.340655,0.659345, maf-5-some-pop,maf-5-all-pops 616 chr1 4136064 4136065 rs6686087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2124.000000,2884.000000, 0.424121,0.575879, maf-5-some-pop,maf-5-all-pops 616 chr1 4137041 4137042 rs10915417 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 616 chr1 4139930 4139931 rs4639725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop,maf-5-all-pops 616 chr1 4145614 4145615 rs10915421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4150784 4150785 rs12065003 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop,genotype-conflict 616 chr1 4152927 4152928 rs4481820 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop,maf-5-all-pops 616 chr1 4157197 4157198 rs4600014 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 616 chr1 4157841 4157842 rs4351611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1558.000000,3450.000000, 0.311102,0.688898, maf-5-some-pop,maf-5-all-pops 616 chr1 4158733 4158734 rs12031803 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 616 chr1 4158954 4158955 rs10915428 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 616 chr1 4160903 4160904 rs7523426 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop 616 chr1 4165197 4165198 rs12073797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 616 chr1 4166003 4166004 rs10399650 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2159.000000,2849.000000, 0.431110,0.568890, maf-5-some-pop,maf-5-all-pops 616 chr1 4167219 4167220 rs16840755 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 616 chr1 4167284 4167285 rs10915430 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop,genotype-conflict 616 chr1 4171342 4171343 rs6702575 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2806.000000,2202.000000, 0.560304,0.439696, maf-5-some-pop,maf-5-all-pops,genotype-conflict 616 chr1 4171785 4171786 rs10492944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 616 chr1 4173505 4173506 rs16840790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 616 chr1 4174115 4174116 rs10915434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops 616 chr1 4176105 4176106 rs6670920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop 616 chr1 4177897 4177898 rs16840802 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,genotype-conflict 616 chr1 4178302 4178303 rs10737402 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4559.000000,449.000000, 0.910343,0.089657, maf-5-some-pop 616 chr1 4182784 4182785 rs4400585 0 + G G G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,microattr-tpa,genotype-conflict 616 chr1 4183005 4183006 rs10915437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3642.000000,1366.000000, 0.727236,0.272764, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4183257 4183258 rs10915438 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1155.000000,3853.000000, 0.230631,0.769369, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4194711 4194712 rs4131507 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop 617 chr1 4197417 4197418 rs4408122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2328.000000,2680.000000, 0.464856,0.535144, maf-5-some-pop,maf-5-all-pops 617 chr1 4201814 4201815 rs4654492 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop 617 chr1 4206209 4206210 rs9426471 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1350.000000,3658.000000, 0.269569,0.730431, maf-5-some-pop,maf-5-all-pops 617 chr1 4206287 4206288 rs9426494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2221.000000,2787.000000, 0.443490,0.556510, maf-5-some-pop,maf-5-all-pops 617 chr1 4207170 4207171 rs16840861 0 + A A A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 3892.000000,4.000000,1112.000000, 0.777156,0.000799,0.222045, maf-5-some-pop,genotype-conflict 617 chr1 4208917 4208918 rs9426495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1692.000000,3316.000000, 0.337859,0.662141, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4214827 4214828 rs41434152 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,AFFY_GWHS,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 1039.000000,3969.000000,3969.000000,1039.000000, 0.103734,0.396266,0.396266,0.103734, maf-5-some-pop 617 chr1 4217087 4217088 rs4589076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 799.000000,4209.000000, 0.159545,0.840455, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4220300 4220301 rs7549636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1078.000000,3930.000000, 0.215256,0.784744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4224557 4224558 rs4654497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 617 chr1 4227011 4227012 rs12065710 0 + C C A/C/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 3 A,C,T, 553.000000,4379.000000,76.000000, 0.110423,0.874401,0.015176, maf-5-some-pop 617 chr1 4227319 4227320 rs16840873 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop 617 chr1 4227463 4227464 rs12123330 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4233809 4233810 rs6695203 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 617 chr1 4235682 4235683 rs4654500 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4235767 4235768 rs4654501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3887.000000,1121.000000, 0.776158,0.223842, maf-5-some-pop,maf-5-all-pops 617 chr1 4236981 4236982 rs4233262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1221.000000,3787.000000, 0.243810,0.756190, maf-5-some-pop,maf-5-all-pops 617 chr1 4237983 4237984 rs12030172 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 617 chr1 4240860 4240861 rs12074230 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3782.000000,1226.000000, 0.755192,0.244808, maf-5-some-pop,maf-5-all-pops 617 chr1 4263062 4263063 rs4654510 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4503.000000,505.000000, 0.899161,0.100839, maf-5-some-pop,genotype-conflict 617 chr1 4263982 4263983 rs4654511 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop,maf-5-all-pops 617 chr1 4268593 4268594 rs12095632 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2400.000000,2608.000000, 0.479233,0.520767, maf-5-some-pop,maf-5-all-pops 617 chr1 4268869 4268870 rs4130091 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 309.000000,4699.000000,4699.000000,309.000000, 0.030851,0.469149,0.469149,0.030851, maf-5-some-pop 617 chr1 4273841 4273842 rs10753372 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops 617 chr1 4275171 4275172 rs1495246 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 617 chr1 4275290 4275291 rs10915476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2656.000000,2352.000000, 0.530351,0.469649, maf-5-some-pop,maf-5-all-pops 617 chr1 4280169 4280170 rs6657617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop,maf-5-all-pops 617 chr1 4280629 4280630 rs4592237 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 617 chr1 4281159 4281160 rs10799216 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4281809 4281810 rs4233265 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 617 chr1 4282999 4283000 rs12120815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop 617 chr1 4283314 4283315 rs2132177 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4775.000000,233.000000,233.000000,4775.000000, 0.476737,0.023263,0.023263,0.476737, maf-5-some-pop 617 chr1 4284023 4284024 rs1809801 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 617 chr1 4284658 4284659 rs903540 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 1377.000000,3631.000000,3631.000000,1377.000000, 0.137480,0.362520,0.362520,0.137480, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4284918 4284919 rs7528938 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2432.000000,2576.000000, 0.485623,0.514377, maf-5-some-pop,maf-5-all-pops 617 chr1 4285990 4285991 rs16840958 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,genotype-conflict 617 chr1 4286035 4286036 rs16840960 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 617 chr1 4291286 4291287 rs16840968 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 682.000000,4326.000000, 0.136182,0.863818, maf-5-some-pop 617 chr1 4299726 4299727 rs7517989 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop,genotype-conflict 617 chr1 4302160 4302161 rs12124548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 617 chr1 4309033 4309034 rs12078298 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops 617 chr1 4316543 4316544 rs16841037 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop,genotype-conflict 617 chr1 4316687 4316688 rs964716 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 310.000000,4698.000000,4698.000000,310.000000, 0.030950,0.469050,0.469050,0.030950, maf-5-some-pop 617 chr1 4317770 4317771 rs10753376 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,G, 4010.000000,998.000000, 0.800719,0.199281, maf-5-some-pop,maf-5-all-pops 617 chr1 4318936 4318937 rs2201498 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 689.000000,4319.000000,4319.000000,689.000000, 0.068790,0.431210,0.431210,0.068790, maf-5-some-pop,maf-5-all-pops 617 chr1 4321466 4321467 rs10915489 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops,genotype-conflict 617 chr1 4322085 4322086 rs16841063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop 618 chr1 4326367 4326368 rs2411738 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1756.000000,3252.000000, 0.350639,0.649361, maf-5-some-pop,microattr-tpa 618 chr1 4326811 4326812 rs12085674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4969.000000,39.000000, 0.992212,0.007788, maf-5-some-pop 618 chr1 4327634 4327635 rs2101576 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1820.000000,3188.000000,3188.000000,1820.000000, 0.181709,0.318291,0.318291,0.181709, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4327863 4327864 rs10915493 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3509.000000,1499.000000, 0.700679,0.299321, maf-5-some-pop,maf-5-all-pops 618 chr1 4328765 4328766 rs10799221 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2119.000000,2889.000000, 0.423123,0.576877, maf-5-some-pop,maf-5-all-pops 618 chr1 4331782 4331783 rs4654426 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3156.000000,1852.000000, 0.630192,0.369808, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4340876 4340877 rs12059199 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop,genotype-conflict 618 chr1 4340990 4340991 rs12057139 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,genotype-conflict 618 chr1 4342603 4342604 rs1495244 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2128.000000,2880.000000, 0.424920,0.575080, maf-5-some-pop,maf-5-all-pops 618 chr1 4343433 4343434 rs6702000 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 2779.000000,2229.000000, 0.554912,0.445088, maf-5-some-pop,maf-5-all-pops 618 chr1 4343544 4343545 rs16838547 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 618 chr1 4343580 4343581 rs16838549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 618 chr1 4343734 4343735 rs17408082 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 618 chr1 4345497 4345498 rs16838559 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 618 chr1 4350858 4350859 rs12066140 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 618 chr1 4351887 4351888 rs16838560 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop 618 chr1 4352709 4352710 rs16838561 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1621.000000,3387.000000, 0.323682,0.676318, maf-5-some-pop 618 chr1 4354461 4354462 rs10915506 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 703.000000,4305.000000, 0.140375,0.859625, maf-5-some-pop,genotype-conflict 618 chr1 4359382 4359383 rs12564602 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 618 chr1 4364225 4364226 rs693734 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3696.000000,1312.000000,1312.000000,3696.000000, 0.369010,0.130990,0.130990,0.369010, maf-5-some-pop,maf-5-all-pops 618 chr1 4364406 4364407 rs2411745 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 486.000000,4522.000000,4522.000000,486.000000, 0.048522,0.451478,0.451478,0.048522, maf-5-some-pop 618 chr1 4364471 4364472 rs1106307 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1268.000000,3740.000000,3740.000000,1268.000000, 0.126597,0.373403,0.373403,0.126597, maf-5-some-pop 618 chr1 4364563 4364564 rs2132176 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1737.000000,3271.000000,3271.000000,1737.000000, 0.173423,0.326577,0.326577,0.173423, maf-5-some-pop,maf-5-all-pops 618 chr1 4367322 4367323 rs1490413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2507.000000,2501.000000, 0.500599,0.499401, maf-5-some-pop,maf-5-all-pops 618 chr1 4367388 4367389 rs16838591 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,genotype-conflict 618 chr1 4367581 4367582 rs12075294 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop 618 chr1 4367809 4367810 rs17448695 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop,genotype-conflict 618 chr1 4367877 4367878 rs6686753 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 618 chr1 4367921 4367922 rs1817914 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop 618 chr1 4368025 4368026 rs1817913 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3380.000000,1628.000000,1628.000000,3380.000000, 0.337460,0.162540,0.162540,0.337460, maf-5-some-pop,genotype-conflict 618 chr1 4368215 4368216 rs4654523 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop 618 chr1 4368270 4368271 rs10915508 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop 618 chr1 4368303 4368304 rs16838616 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop 618 chr1 4368440 4368441 rs351622 0 + A A A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop 618 chr1 4368818 4368819 rs351619 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4370073 4370074 rs1495239 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 918.000000,4090.000000,4090.000000,918.000000, 0.091653,0.408347,0.408347,0.091653, maf-5-some-pop,genotype-conflict 618 chr1 4370345 4370346 rs16838636 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 618 chr1 4370384 4370385 rs351615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4371862 4371863 rs351614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop,maf-5-all-pops 618 chr1 4371948 4371949 rs12132314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4342.000000,666.000000, 0.867013,0.132987, maf-5-some-pop,genotype-conflict 618 chr1 4372048 4372049 rs1495237 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 610.000000,4398.000000,4398.000000,610.000000, 0.060903,0.439097,0.439097,0.060903, maf-5-some-pop,genotype-conflict 618 chr1 4376815 4376816 rs3912751 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop,genotype-conflict 618 chr1 4377031 4377032 rs3912752 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 618 chr1 4377910 4377911 rs351596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 618 chr1 4378133 4378134 rs12744254 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 717.000000,4291.000000, 0.143171,0.856829, maf-5-some-pop 618 chr1 4379726 4379727 rs12408318 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,maf-5-all-pops 618 chr1 4379876 4379877 rs876273 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 2 C,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 618 chr1 4379957 4379958 rs351598 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2426.000000,2582.000000, 0.484425,0.515575, maf-5-some-pop 618 chr1 4380194 4380195 rs1874269 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3058.000000,1950.000000, 0.610623,0.389377, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4380343 4380344 rs2411741 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3817.000000,1191.000000,1191.000000,3817.000000, 0.381090,0.118910,0.118910,0.381090, maf-5-some-pop,genotype-conflict 618 chr1 4380517 4380518 rs7418164 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 618 chr1 4381015 4381016 rs2130618 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 C,G, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,genotype-conflict 618 chr1 4385178 4385179 rs351610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3152.000000,1856.000000, 0.629393,0.370607, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4385747 4385748 rs12042246 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 618 chr1 4387017 4387018 rs670072 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4141.000000,867.000000,867.000000,4141.000000, 0.413438,0.086562,0.086562,0.413438, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4388757 4388758 rs12042782 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop 618 chr1 4388884 4388885 rs641473 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2056.000000,2952.000000,2952.000000,2056.000000, 0.205272,0.294728,0.294728,0.205272, maf-5-some-pop,maf-5-all-pops 618 chr1 4389198 4389199 rs581070 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2099.000000,2909.000000, 0.419129,0.580871, maf-5-some-pop,maf-5-all-pops 618 chr1 4389261 4389262 rs639739 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 971.000000,4037.000000,4037.000000,971.000000, 0.096945,0.403055,0.403055,0.096945, maf-5-some-pop 618 chr1 4390210 4390211 rs501284 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4390229 4390230 rs501334 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2002.000000,3006.000000,3006.000000,2002.000000, 0.199880,0.300120,0.300120,0.199880, maf-5-some-pop,maf-5-all-pops 618 chr1 4395019 4395020 rs12046130 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 618 chr1 4395234 4395235 rs12117178 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop,genotype-conflict 618 chr1 4396551 4396552 rs496925 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 1506.000000,806.000000, 0.651384,0.348616, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4397913 4397914 rs1691449 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop 618 chr1 4398327 4398328 rs590925 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,maf-5-all-pops 618 chr1 4398695 4398696 rs592386 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4400.000000,608.000000, 0.878594,0.121406, maf-5-some-pop 618 chr1 4402713 4402714 rs10915517 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop 618 chr1 4402851 4402852 rs590537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops 618 chr1 4402900 4402901 rs565452 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4075.000000,933.000000,933.000000,4075.000000, 0.406849,0.093151,0.093151,0.406849, maf-5-some-pop,maf-5-all-pops 618 chr1 4407984 4407985 rs523634 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4045.000000,963.000000,963.000000,4045.000000, 0.403854,0.096146,0.096146,0.403854, maf-5-some-pop,maf-5-all-pops 618 chr1 4408074 4408075 rs12139755 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 618 chr1 4408305 4408306 rs585160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4043.000000,965.000000, 0.807308,0.192692, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4409495 4409496 rs600933 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2090.000000,2918.000000, 0.417332,0.582668, maf-5-some-pop,maf-5-all-pops 618 chr1 4414085 4414086 rs598894 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 963.000000,4045.000000,4045.000000,963.000000, 0.096146,0.403854,0.403854,0.096146, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4414153 4414154 rs527351 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 966.000000,4042.000000,4042.000000,966.000000, 0.096446,0.403554,0.403554,0.096446, maf-5-some-pop,maf-5-all-pops 618 chr1 4414715 4414716 rs596133 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2081.000000,2927.000000,2927.000000,2081.000000, 0.207768,0.292232,0.292232,0.207768, maf-5-some-pop,genotype-conflict 618 chr1 4414823 4414824 rs585281 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 967.000000,4041.000000,4041.000000,967.000000, 0.096546,0.403454,0.403454,0.096546, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4417960 4417961 rs12022854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 618 chr1 4422004 4422005 rs349391 0 - T T A/G genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2184.000000,2824.000000,2824.000000,2184.000000, 0.218051,0.281949,0.281949,0.218051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4422229 4422230 rs16838800 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4423895 4423896 rs349390 0 - T T A/G genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 2035.000000,2973.000000,2973.000000,2035.000000, 0.203175,0.296825,0.296825,0.203175, maf-5-some-pop,maf-5-all-pops 618 chr1 4424114 4424115 rs16838812 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop 618 chr1 4424144 4424145 rs16838813 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,SSMP,TISHKOFF, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,genotype-conflict 618 chr1 4425875 4425876 rs12404603 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4569.000000,439.000000, 0.912340,0.087660, maf-5-some-pop 618 chr1 4426417 4426418 rs349387 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 715.000000,4293.000000,4293.000000,715.000000, 0.071386,0.428614,0.428614,0.071386, maf-5-some-pop,genotype-conflict 618 chr1 4426477 4426478 rs16838819 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop,maf-5-all-pops 618 chr1 4426796 4426797 rs1032325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop,maf-5-all-pops,genotype-conflict 618 chr1 4427082 4427083 rs12023786 0 + G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 618 chr1 4427522 4427523 rs12119772 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 618 chr1 4427561 4427562 rs7519313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop 618 chr1 4428594 4428595 rs12029905 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 618 chr1 4434973 4434974 rs661536 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 357.000000,4651.000000,4651.000000,357.000000, 0.035643,0.464357,0.464357,0.035643, maf-5-some-pop 618 chr1 4435269 4435270 rs727658 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1279.000000,3729.000000,3729.000000,1279.000000, 0.127696,0.372304,0.372304,0.127696, maf-5-some-pop,genotype-conflict 618 chr1 4436020 4436021 rs2926484 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4062.000000,946.000000,946.000000,4062.000000, 0.405551,0.094449,0.094449,0.405551, maf-5-some-pop 618 chr1 4440597 4440598 rs16838830 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 277.000000,4731.000000, 0.055312,0.944688, maf-5-some-pop,maf-5-all-pops 618 chr1 4440748 4440749 rs589870 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 648.000000,4360.000000,4360.000000,648.000000, 0.064696,0.435304,0.435304,0.064696, maf-5-some-pop,genotype-conflict 618 chr1 4440977 4440978 rs1845636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 693.000000,4315.000000, 0.138379,0.861621, maf-5-some-pop,genotype-conflict 618 chr1 4441166 4441167 rs1495249 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3847.000000,1161.000000,1161.000000,3847.000000, 0.384085,0.115915,0.115915,0.384085, maf-5-some-pop 618 chr1 4442486 4442487 rs6697594 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop 618 chr1 4443107 4443108 rs12037374 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3827.000000,1181.000000, 0.764177,0.235823, maf-5-some-pop,genotype-conflict 618 chr1 4443385 4443386 rs12035324 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 793.000000,4215.000000, 0.158347,0.841653, maf-5-some-pop,genotype-conflict 618 chr1 4444538 4444539 rs239339 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4307.000000,701.000000, 0.860024,0.139976, maf-5-some-pop,microattr-tpa 618 chr1 4444705 4444706 rs349413 0 + C C A/C genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop 618 chr1 4447420 4447421 rs10915521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop 618 chr1 4453303 4453304 rs12039284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop,genotype-conflict 618 chr1 4454511 4454512 rs16838915 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3419.000000,1589.000000, 0.682708,0.317292, maf-5-some-pop 618 chr1 4455414 4455415 rs349415 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops 618 chr1 4456046 4456047 rs16838922 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 618 chr1 4456276 4456277 rs7521665 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1244.000000,3764.000000, 0.248403,0.751597, maf-5-some-pop 619 chr1 4456532 4456533 rs7552146 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1246.000000,3762.000000, 0.248802,0.751198, maf-5-some-pop,genotype-conflict 619 chr1 4457111 4457112 rs16838929 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3948.000000,1060.000000, 0.788339,0.211661, maf-5-some-pop 619 chr1 4458067 4458068 rs349417 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4459048 4459049 rs12042555 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop 619 chr1 4459619 4459620 rs12043406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3769.000000,1239.000000, 0.752596,0.247404, maf-5-some-pop 619 chr1 4459688 4459689 rs6679220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1539.000000,3469.000000, 0.307308,0.692692, maf-5-some-pop,maf-5-all-pops,microattr-tpa 619 chr1 4459702 4459703 rs16838943 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop 619 chr1 4460261 4460262 rs12043606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3762.000000,1246.000000, 0.751198,0.248802, maf-5-some-pop 619 chr1 4460704 4460705 rs1870506 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1250.000000,3758.000000, 0.249601,0.750399, maf-5-some-pop 619 chr1 4462459 4462460 rs349400 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2299.000000,2709.000000, 0.459065,0.540935, maf-5-some-pop,maf-5-all-pops 619 chr1 4462903 4462904 rs12046579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop 619 chr1 4464441 4464442 rs4347181 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop 619 chr1 4464932 4464933 rs12116790 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4569.000000,439.000000, 0.912340,0.087660, maf-5-some-pop 619 chr1 4466534 4466535 rs10915525 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop 619 chr1 4467973 4467974 rs10799232 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,genotype-conflict 619 chr1 4470528 4470529 rs12023230 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 619 chr1 4471373 4471374 rs10915528 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop 619 chr1 4471433 4471434 rs508647 0 - T T A/C genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4323.000000,685.000000,685.000000,4323.000000, 0.431609,0.068391,0.068391,0.431609, maf-5-some-pop 619 chr1 4471732 4471733 rs505933 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1213.000000,3795.000000,3795.000000,1213.000000, 0.121106,0.378894,0.378894,0.121106, maf-5-some-pop,maf-5-all-pops 619 chr1 4471883 4471884 rs2130620 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 4590.000000,418.000000,418.000000,4590.000000, 0.458267,0.041733,0.041733,0.458267, maf-5-some-pop 619 chr1 4472025 4472026 rs659514 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop,maf-5-all-pops 619 chr1 4476383 4476384 rs4654534 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop 619 chr1 4477910 4477911 rs349409 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 619 chr1 4481214 4481215 rs4654432 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3486.000000,1522.000000, 0.696086,0.303914, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 619 chr1 4481631 4481632 rs4654433 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 619 chr1 4482001 4482002 rs12026870 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 619 chr1 4482609 4482610 rs737324 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 619 chr1 4490337 4490338 rs6676603 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3480.000000,1528.000000, 0.694888,0.305112, maf-5-some-pop,maf-5-all-pops 619 chr1 4490620 4490621 rs12128251 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3822.000000,1186.000000, 0.763179,0.236821, maf-5-some-pop 619 chr1 4491746 4491747 rs17452433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 619 chr1 4492423 4492424 rs6681282 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 619 chr1 4493687 4493688 rs1565452 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 619 chr1 4496658 4496659 rs1674877 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4496705 4496706 rs16839003 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop,genotype-conflict 619 chr1 4497096 4497097 rs1335364 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1141.000000,3867.000000,3867.000000,1141.000000, 0.113918,0.386082,0.386082,0.113918, maf-5-some-pop,maf-5-all-pops 619 chr1 4497117 4497118 rs6660514 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 619 chr1 4497129 4497130 rs1335363 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4737.000000,271.000000,271.000000,4737.000000, 0.472943,0.027057,0.027057,0.472943, maf-5-some-pop 619 chr1 4500435 4500436 rs12731060 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 619 chr1 4501983 4501984 rs780573 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,genotype-conflict 619 chr1 4504430 4504431 rs10915540 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 619 chr1 4504570 4504571 rs7531965 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,genotype-conflict 619 chr1 4504926 4504927 rs780586 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4505511 4505512 rs10915541 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 619 chr1 4505965 4505966 rs780587 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 556.000000,4452.000000,4452.000000,556.000000, 0.055511,0.444489,0.444489,0.055511, maf-5-some-pop 619 chr1 4506844 4506845 rs10799233 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4357.000000,651.000000, 0.870008,0.129992, maf-5-some-pop 619 chr1 4507762 4507763 rs780594 0 + T T C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop 619 chr1 4508347 4508348 rs17453210 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,genotype-conflict 619 chr1 4510419 4510420 rs12564622 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 619 chr1 4521735 4521736 rs619729 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2872.000000,2136.000000,2136.000000,2872.000000, 0.286741,0.213259,0.213259,0.286741, maf-5-some-pop,maf-5-all-pops 619 chr1 4522465 4522466 rs10737409 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 619 chr1 4523356 4523357 rs664520 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 657.000000,4351.000000, 0.131190,0.868810, maf-5-some-pop 619 chr1 4523409 4523410 rs17453664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop 619 chr1 4529102 4529103 rs7526548 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 619 chr1 4529543 4529544 rs10915545 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 619 chr1 4532683 4532684 rs12142580 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 619 chr1 4532710 4532711 rs12142584 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4536675 4536676 rs6426417 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1545.000000,3463.000000, 0.308506,0.691494, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4540794 4540795 rs1037800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 619 chr1 4541424 4541425 rs6426418 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,genotype-conflict 619 chr1 4541443 4541444 rs16839089 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop,genotype-conflict 619 chr1 4543241 4543242 rs16839093 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 619 chr1 4544792 4544793 rs350171 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 G,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop,genotype-conflict 619 chr1 4546208 4546209 rs16839101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop 619 chr1 4549100 4549101 rs350186 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 314.000000,4694.000000, 0.062700,0.937300, maf-5-some-pop 619 chr1 4549306 4549307 rs705689 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,genotype-conflict 619 chr1 4549379 4549380 rs705690 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3804.000000,1204.000000, 0.759585,0.240415, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4549401 4549402 rs780606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1930.000000,3078.000000, 0.385383,0.614617, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4549932 4549933 rs350187 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop,genotype-conflict 619 chr1 4550752 4550753 rs780608 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 2 G,T, 4372.000000,636.000000, 0.873003,0.126997, maf-5-some-pop 619 chr1 4551454 4551455 rs780611 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop 619 chr1 4551678 4551679 rs780614 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop,genotype-conflict 619 chr1 4552058 4552059 rs350189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,genotype-conflict 619 chr1 4552088 4552089 rs350190 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop 619 chr1 4558012 4558013 rs9659744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2042.000000,2966.000000, 0.407748,0.592252, maf-5-some-pop,maf-5-all-pops 619 chr1 4558791 4558792 rs10915548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1992.000000,3016.000000, 0.397764,0.602236, maf-5-some-pop,maf-5-all-pops 619 chr1 4558971 4558972 rs13374152 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop 619 chr1 4559483 4559484 rs616317 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 619 chr1 4559900 4559901 rs4654438 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2663.000000,2345.000000, 0.531749,0.468251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4561164 4561165 rs676853 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 619 chr1 4561466 4561467 rs678246 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop 619 chr1 4562044 4562045 rs583027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 619 chr1 4562269 4562270 rs11802495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop 619 chr1 4564683 4564684 rs350165 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 4 A,C,G,T, 377.000000,4631.000000,4631.000000,377.000000, 0.037640,0.462360,0.462360,0.037640, maf-5-some-pop,genotype-conflict 619 chr1 4565905 4565906 rs10753381 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1989.000000,3019.000000, 0.397165,0.602835, maf-5-some-pop,maf-5-all-pops 619 chr1 4566052 4566053 rs10753382 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3115.000000,1893.000000, 0.622005,0.377995, maf-5-some-pop,maf-5-all-pops 619 chr1 4566064 4566065 rs4654440 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,maf-5-all-pops 619 chr1 4569546 4569547 rs10799241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops 619 chr1 4571739 4571740 rs1710415 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 897.000000,4111.000000,4111.000000,897.000000, 0.089557,0.410443,0.410443,0.089557, maf-5-some-pop,maf-5-all-pops 619 chr1 4576969 4576970 rs670296 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop 619 chr1 4577119 4577120 rs4654443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 619 chr1 4578494 4578495 rs6703696 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4570.000000,438.000000, 0.912540,0.087460, maf-5-some-pop,genotype-conflict 619 chr1 4578727 4578728 rs17348734 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop,genotype-conflict 619 chr1 4578789 4578790 rs12038994 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop 619 chr1 4578892 4578893 rs16839198 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop,maf-5-all-pops,genotype-conflict 619 chr1 4579238 4579239 rs12039101 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3004.000000,2004.000000, 0.599840,0.400160, maf-5-some-pop,maf-5-all-pops 619 chr1 4579257 4579258 rs1229148 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 619 chr1 4579980 4579981 rs13375249 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 619 chr1 4580134 4580135 rs13375764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop 619 chr1 4581265 4581266 rs685831 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 4 A,C,G,T, 794.000000,4214.000000,4214.000000,794.000000, 0.079273,0.420727,0.420727,0.079273, maf-5-some-pop,genotype-conflict 619 chr1 4581337 4581338 rs12039710 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,genotype-conflict 619 chr1 4581622 4581623 rs607850 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3734.000000,1274.000000,1274.000000,3734.000000, 0.372804,0.127196,0.127196,0.372804, maf-5-some-pop,genotype-conflict 619 chr1 4582088 4582089 rs518456 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2182.000000,2826.000000, 0.435703,0.564297, maf-5-some-pop,maf-5-all-pops 619 chr1 4582198 4582199 rs10489135 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 4 A,C,G,T, 4293.000000,715.000000,715.000000,4293.000000, 0.428614,0.071386,0.071386,0.428614, maf-5-some-pop,microattr-tpa,genotype-conflict 619 chr1 4586605 4586606 rs780983 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4184.000000,824.000000, 0.835463,0.164537, maf-5-some-pop,maf-5-all-pops 619 chr1 4587176 4587177 rs241239 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop 619 chr1 4587518 4587519 rs241238 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop 620 chr1 4587594 4587595 rs10915551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4573.000000,435.000000, 0.913139,0.086861, maf-5-some-pop 620 chr1 4587968 4587969 rs241237 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2251.000000,2757.000000,2757.000000,2251.000000, 0.224740,0.275260,0.275260,0.224740, maf-5-some-pop 620 chr1 4593613 4593614 rs241228 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP, 4 A,C,G,T, 4714.000000,294.000000,294.000000,4714.000000, 0.470647,0.029353,0.029353,0.470647, maf-5-some-pop 620 chr1 4603323 4603324 rs694935 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2479.000000,2529.000000, 0.495008,0.504992, maf-5-some-pop,maf-5-all-pops 620 chr1 4603867 4603868 rs6691031 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1403.000000,3605.000000, 0.280152,0.719848, maf-5-some-pop 620 chr1 4604103 4604104 rs241215 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1938.000000,3070.000000, 0.386981,0.613019, maf-5-some-pop,maf-5-all-pops 620 chr1 4605402 4605403 rs17348839 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,genotype-conflict 620 chr1 4605421 4605422 rs241218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4606470 4606471 rs12092980 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4416.000000,592.000000, 0.881789,0.118211, maf-5-some-pop 620 chr1 4610147 4610148 rs6690675 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop,genotype-conflict 620 chr1 4610249 4610250 rs241244 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1699.000000,3309.000000, 0.339257,0.660743, maf-5-some-pop,maf-5-all-pops 620 chr1 4611298 4611299 rs7542801 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop,genotype-conflict 620 chr1 4611434 4611435 rs7549444 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,maf-5-all-pops 620 chr1 4612839 4612840 rs12728076 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop,maf-5-all-pops 620 chr1 4614511 4614512 rs241256 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops 620 chr1 4614821 4614822 rs241257 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2249.000000,2759.000000,2759.000000,2249.000000, 0.224541,0.275459,0.275459,0.224541, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4615012 4615013 rs171319 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 680.000000,4328.000000,4328.000000,680.000000, 0.067891,0.432109,0.432109,0.067891, maf-5-some-pop,genotype-conflict 620 chr1 4615330 4615331 rs4654556 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1159.000000,3849.000000, 0.231430,0.768570, maf-5-some-pop,maf-5-all-pops 620 chr1 4616065 4616066 rs241260 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1635.000000,3373.000000, 0.326478,0.673522, maf-5-some-pop,maf-5-all-pops 620 chr1 4616101 4616102 rs241261 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3375.000000,1633.000000, 0.673922,0.326078, maf-5-some-pop,maf-5-all-pops 620 chr1 4617855 4617856 rs10799244 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop,genotype-conflict 620 chr1 4620995 4620996 rs12120353 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,C, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop,genotype-conflict 620 chr1 4625188 4625189 rs241270 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops 620 chr1 4627978 4627979 rs241275 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3295.000000,1713.000000, 0.657947,0.342053, maf-5-some-pop,maf-5-all-pops 620 chr1 4628569 4628570 rs10915561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 620 chr1 4629407 4629408 rs241278 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop 620 chr1 4630341 4630342 rs16839328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4630482 4630483 rs7526879 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop 620 chr1 4631265 4631266 rs241212 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 821.000000,4187.000000,4187.000000,821.000000, 0.081969,0.418031,0.418031,0.081969, maf-5-some-pop 620 chr1 4634977 4634978 rs1541318 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3894.000000,1114.000000,1114.000000,3894.000000, 0.388778,0.111222,0.111222,0.388778, maf-5-some-pop,genotype-conflict 620 chr1 4640901 4640902 rs1024139 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3380.000000,1628.000000,1628.000000,3380.000000, 0.337460,0.162540,0.162540,0.337460, maf-5-some-pop,maf-5-all-pops 620 chr1 4641741 4641742 rs241225 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4193.000000,815.000000,815.000000,4193.000000, 0.418630,0.081370,0.081370,0.418630, maf-5-some-pop,genotype-conflict 620 chr1 4641798 4641799 rs241224 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4206.000000,802.000000,802.000000,4206.000000, 0.419928,0.080072,0.080072,0.419928, maf-5-some-pop,genotype-conflict 620 chr1 4643687 4643688 rs515279 0 - T T A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 22 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 728.000000,4280.000000,4280.000000,728.000000, 0.072684,0.427316,0.427316,0.072684, maf-5-some-pop 620 chr1 4646378 4646379 rs619364 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 620 chr1 4646484 4646485 rs536749 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 837.000000,4171.000000,4171.000000,837.000000, 0.083566,0.416434,0.416434,0.083566, maf-5-some-pop,genotype-conflict 620 chr1 4646962 4646963 rs532259 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4174.000000,834.000000,834.000000,4174.000000, 0.416733,0.083267,0.083267,0.416733, maf-5-some-pop,genotype-conflict 620 chr1 4651203 4651204 rs12079284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1019.000000,3989.000000, 0.203474,0.796526, maf-5-some-pop,maf-5-all-pops 620 chr1 4652283 4652284 rs17349020 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4659.000000,349.000000, 0.930312,0.069688, maf-5-some-pop,genotype-conflict 620 chr1 4652511 4652512 rs164772 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4387.000000,621.000000,621.000000,4387.000000, 0.437999,0.062001,0.062001,0.437999, maf-5-some-pop,genotype-conflict 620 chr1 4653092 4653093 rs7518655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 620 chr1 4653263 4653264 rs7518781 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 620 chr1 4656146 4656147 rs6426423 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops 620 chr1 4656697 4656698 rs129794 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1067.000000,3941.000000,3941.000000,1067.000000, 0.106530,0.393470,0.393470,0.106530, maf-5-some-pop 620 chr1 4657048 4657049 rs526695 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 755.000000,4253.000000,4253.000000,755.000000, 0.075379,0.424621,0.424621,0.075379, maf-5-some-pop,genotype-conflict 620 chr1 4657294 4657295 rs651695 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop,maf-5-all-pops 620 chr1 4658460 4658461 rs16839354 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 37.000000,4971.000000, 0.007388,0.992612, maf-5-some-pop 620 chr1 4658537 4658538 rs12567277 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2319.000000,2689.000000, 0.463059,0.536941, maf-5-some-pop,genotype-conflict 620 chr1 4662531 4662532 rs618751 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1023.000000,3985.000000,3985.000000,1023.000000, 0.102137,0.397863,0.397863,0.102137, maf-5-some-pop,genotype-conflict 620 chr1 4665231 4665232 rs164781 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1921.000000,3087.000000,3087.000000,1921.000000, 0.191793,0.308207,0.308207,0.191793, maf-5-some-pop 620 chr1 4666493 4666494 rs164780 0 - C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4667995 4667996 rs12141994 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,genotype-conflict 620 chr1 4668422 4668423 rs11590266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,genotype-conflict 620 chr1 4672754 4672755 rs6703429 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1327.000000,3681.000000, 0.264976,0.735024, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4673936 4673937 rs10489133 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 4 A,C,G,T, 89.000000,4919.000000,4919.000000,89.000000, 0.008886,0.491114,0.491114,0.008886, maf-5-some-pop 620 chr1 4674025 4674026 rs763219 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3546.000000,1462.000000,1462.000000,3546.000000, 0.354034,0.145966,0.145966,0.354034, maf-5-some-pop,genotype-conflict 620 chr1 4677534 4677535 rs4403602 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2934.000000,2074.000000, 0.585863,0.414137, maf-5-some-pop,maf-5-all-pops 620 chr1 4679562 4679563 rs12145928 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 580.000000,4428.000000, 0.115815,0.884185, maf-5-some-pop 620 chr1 4682103 4682104 rs6668002 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops,microattr-tpa 620 chr1 4682229 4682230 rs12026258 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop 620 chr1 4682272 4682273 rs6668199 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops 620 chr1 4682531 4682532 rs12403290 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 620 chr1 4682721 4682722 rs12029434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop 620 chr1 4685647 4685648 rs875808 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2429.000000,2579.000000,2579.000000,2429.000000, 0.242512,0.257488,0.257488,0.242512, maf-5-some-pop 620 chr1 4687281 4687282 rs2269620 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4079.000000,929.000000,929.000000,4079.000000, 0.407248,0.092752,0.092752,0.407248, maf-5-some-pop 620 chr1 4687873 4687874 rs7553610 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1680.000000,3328.000000, 0.335463,0.664537, maf-5-some-pop,maf-5-all-pops 620 chr1 4688032 4688033 rs6662425 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2772.000000,2236.000000, 0.553514,0.446486, maf-5-some-pop,maf-5-all-pops 620 chr1 4688160 4688161 rs6426430 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop 620 chr1 4690892 4690893 rs7527078 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3073.000000,1935.000000, 0.613618,0.386382, maf-5-some-pop,genotype-conflict 620 chr1 4691859 4691860 rs10799249 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,genotype-conflict 620 chr1 4693930 4693931 rs6687814 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2857.000000,2151.000000, 0.570487,0.429513, maf-5-some-pop,maf-5-all-pops 620 chr1 4694597 4694598 rs12405615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop 620 chr1 4696091 4696092 rs2071967 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1522.000000,3486.000000,3486.000000,1522.000000, 0.151957,0.348043,0.348043,0.151957, maf-5-some-pop,genotype-conflict 620 chr1 4696370 4696371 rs12744374 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop 620 chr1 4697299 4697300 rs2101195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2792.000000,2216.000000, 0.557508,0.442492, maf-5-some-pop,maf-5-all-pops 620 chr1 4705930 4705931 rs7533451 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 620 chr1 4706754 4706755 rs12125737 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3307.000000,1701.000000, 0.660343,0.339657, maf-5-some-pop,maf-5-all-pops 620 chr1 4712483 4712484 rs6702210 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 620 chr1 4717339 4717340 rs900501 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 620 chr1 4717390 4717391 rs1483198 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4055.000000,953.000000, 0.809704,0.190296, maf-5-some-pop,genotype-conflict 620 chr1 4718550 4718551 rs3947662 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,genotype-conflict 621 chr1 4722430 4722431 rs2035454 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 621 chr1 4722442 4722443 rs1531830 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 621 chr1 4723817 4723818 rs12083131 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4723841 4723842 rs12083135 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 514.000000,4494.000000, 0.102636,0.897364, maf-5-some-pop 621 chr1 4723916 4723917 rs10915578 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3847.000000,1161.000000, 0.768171,0.231829, maf-5-some-pop 621 chr1 4724012 4724013 rs10915579 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 937.000000,4071.000000, 0.187101,0.812899, maf-5-some-pop,genotype-conflict 621 chr1 4724047 4724048 rs17455108 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 621 chr1 4724269 4724270 rs12140542 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop 621 chr1 4730282 4730283 rs4654582 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop,maf-5-all-pops 621 chr1 4731676 4731677 rs10799255 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3265.000000,1743.000000, 0.651957,0.348043, maf-5-some-pop,maf-5-all-pops 621 chr1 4731927 4731928 rs11587129 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1636.000000,3372.000000, 0.326677,0.673323, maf-5-some-pop 621 chr1 4732131 4732132 rs12138000 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 621 chr1 4732333 4732334 rs1564666 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop 621 chr1 4733792 4733793 rs12409187 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 626.000000,4382.000000, 0.125000,0.875000, maf-5-some-pop,genotype-conflict 621 chr1 4734513 4734514 rs12411035 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop,maf-5-all-pops 621 chr1 4735055 4735056 rs13376219 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1074.000000,3934.000000, 0.214457,0.785543, maf-5-some-pop,maf-5-all-pops 621 chr1 4735907 4735908 rs16839447 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop,genotype-conflict 621 chr1 4736455 4736456 rs10915584 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,genotype-conflict 621 chr1 4737382 4737383 rs11588881 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,genotype-conflict 621 chr1 4737530 4737531 rs16839450 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4035.000000,973.000000, 0.805711,0.194289, maf-5-some-pop,maf-5-all-pops 621 chr1 4737604 4737605 rs2071989 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4737692 4737693 rs16839451 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop 621 chr1 4738393 4738394 rs2071992 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 621 chr1 4738677 4738678 rs2071995 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4067.000000,941.000000, 0.812101,0.187899, maf-5-some-pop,maf-5-all-pops 621 chr1 4739317 4739318 rs10799257 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4739424 4739425 rs11809744 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 948.000000,4060.000000, 0.189297,0.810703, maf-5-some-pop,maf-5-all-pops 621 chr1 4746635 4746636 rs10915587 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1948.000000,3060.000000, 0.388978,0.611022, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4747662 4747663 rs16839462 0 + G G C/G genomic single unknown 0 0 intron exact 1 MixedObserved 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 930.000000,4078.000000, 0.185703,0.814297, maf-5-some-pop 621 chr1 4747736 4747737 rs12747700 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1241.000000,3767.000000, 0.247804,0.752196, maf-5-some-pop 621 chr1 4749075 4749076 rs4092257 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2978.000000,2030.000000, 0.594649,0.405351, maf-5-some-pop,maf-5-all-pops 621 chr1 4750118 4750119 rs16839468 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 621 chr1 4754056 4754057 rs7525374 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 621 chr1 4757231 4757232 rs7549821 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 621 chr1 4758168 4758169 rs2071997 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4518.000000,490.000000, 0.902156,0.097843, maf-5-some-pop 621 chr1 4758438 4758439 rs11800746 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 621 chr1 4763188 4763189 rs6686733 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 932.000000,4076.000000, 0.186102,0.813898, maf-5-some-pop,maf-5-all-pops 621 chr1 4764154 4764155 rs4654589 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop 621 chr1 4770903 4770904 rs1483197 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2456.000000,2552.000000, 0.490415,0.509585, maf-5-some-pop,maf-5-all-pops 621 chr1 4773265 4773266 rs2071999 0 + A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 3 A,C,G, 3068.000000,1869.000000,71.000000, 0.612620,0.373203,0.014177, maf-5-some-pop,maf-5-all-pops 621 chr1 4774437 4774438 rs242058 0 + T T C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 621 chr1 4777626 4777627 rs16839502 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4443.000000,565.000000, 0.887181,0.112819, maf-5-some-pop,genotype-conflict 621 chr1 4778231 4778232 rs3766959 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2353.000000,2655.000000, 0.469848,0.530152, maf-5-some-pop,maf-5-all-pops 621 chr1 4780749 4780750 rs3820250 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop 621 chr1 4781150 4781151 rs3820251 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 621 chr1 4781921 4781922 rs12135881 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 621 chr1 4787413 4787414 rs16839525 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 621 chr1 4788353 4788354 rs3766962 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,genotype-conflict 621 chr1 4792183 4792184 rs3766964 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4792653 4792654 rs4448488 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 621 chr1 4793579 4793580 rs16839536 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,G, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,genotype-conflict 621 chr1 4794113 4794114 rs442170 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,WUGSC_SSAHASNP,YUSUKE, 2 C,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,genotype-conflict 621 chr1 4796557 4796558 rs392630 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 915.000000,4093.000000, 0.182708,0.817292, maf-5-some-pop,genotype-conflict 621 chr1 4797497 4797498 rs544738 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3854.000000,1154.000000, 0.769569,0.230431, maf-5-some-pop,maf-5-all-pops 621 chr1 4799199 4799200 rs3753702 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 621 chr1 4799269 4799270 rs449181 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop 621 chr1 4802512 4802513 rs448741 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop,maf-5-all-pops 621 chr1 4802727 4802728 rs431966 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 621 chr1 4803264 4803265 rs367673 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 621 chr1 4803833 4803834 rs393976 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2336.000000,2672.000000, 0.466454,0.533546, maf-5-some-pop 621 chr1 4805105 4805106 rs414176 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop 621 chr1 4805886 4805887 rs9787371 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,genotype-conflict 621 chr1 4809119 4809120 rs2802720 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 924.000000,4084.000000,4084.000000,924.000000, 0.092252,0.407748,0.407748,0.092252, maf-5-some-pop 621 chr1 4809490 4809491 rs12090274 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 621 chr1 4811382 4811383 rs449154 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, maf-5-some-pop 621 chr1 4812814 4812815 rs381240 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3658.000000,1350.000000,1350.000000,3658.000000, 0.365216,0.134784,0.134784,0.365216, maf-5-some-pop 621 chr1 4814116 4814117 rs434474 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 621 chr1 4814399 4814400 rs428001 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1580.000000,3428.000000, 0.315495,0.684505, maf-5-some-pop,genotype-conflict 621 chr1 4814750 4814751 rs3766969 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 372.000000,4636.000000, 0.074281,0.925719, maf-5-some-pop,genotype-conflict 621 chr1 4816186 4816187 rs3820255 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop,genotype-conflict 621 chr1 4816201 4816202 rs12022212 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,genotype-conflict 621 chr1 4817507 4817508 rs11591221 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 621 chr1 4817716 4817717 rs16838479 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop 621 chr1 4818362 4818363 rs7537345 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop 621 chr1 4819802 4819803 rs368420 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3277.000000,1731.000000, 0.654353,0.345647, maf-5-some-pop,maf-5-all-pops,genotype-conflict 621 chr1 4820798 4820799 rs397559 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 621 chr1 4820965 4820966 rs879092 0 - A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TSC-CSHL,WUGSC_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 621 chr1 4821296 4821297 rs443850 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 803.000000,4205.000000,4205.000000,803.000000, 0.080172,0.419828,0.419828,0.080172, maf-5-some-pop,genotype-conflict 621 chr1 4824310 4824311 rs12066439 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 621 chr1 4825151 4825152 rs2743979 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1250.000000,3758.000000, 0.249601,0.750399, maf-5-some-pop,genotype-conflict 621 chr1 4826103 4826104 rs2802716 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1260.000000,3748.000000,3748.000000,1260.000000, 0.125799,0.374201,0.374201,0.125799, maf-5-some-pop 621 chr1 4830484 4830485 rs16839634 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,genotype-conflict 621 chr1 4831994 4831995 rs12030346 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3787.000000,1221.000000, 0.756190,0.243810, maf-5-some-pop,maf-5-all-pops 621 chr1 4833746 4833747 rs12029492 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,genotype-conflict 621 chr1 4835892 4835893 rs874613 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 621 chr1 4838240 4838241 rs414909 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop,genotype-conflict 621 chr1 4844822 4844823 rs41355644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 621 chr1 4845111 4845112 rs9426484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop 621 chr1 4845891 4845892 rs6426434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop 621 chr1 4847593 4847594 rs11805709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3855.000000,1153.000000, 0.769768,0.230232, maf-5-some-pop 622 chr1 4851208 4851209 rs2235441 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop,genotype-conflict 622 chr1 4853067 4853068 rs12408533 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 622 chr1 4858407 4858408 rs4654606 0 + T T G/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4859307 4859308 rs10158511 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 690.000000,4318.000000, 0.137780,0.862220, maf-5-some-pop 622 chr1 4859487 4859488 rs17345273 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop 622 chr1 4859863 4859864 rs16839672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 485.000000,4523.000000, 0.096845,0.903155, maf-5-some-pop 622 chr1 4864984 4864985 rs10915606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3181.000000,1827.000000, 0.635184,0.364816, maf-5-some-pop 622 chr1 4867548 4867549 rs7534770 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1561.000000,3447.000000, 0.311701,0.688299, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4867751 4867752 rs12091444 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 622 chr1 4867849 4867850 rs12410445 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop 622 chr1 4870015 4870016 rs12090401 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop,genotype-conflict 622 chr1 4878870 4878871 rs1120120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 733.000000,4275.000000, 0.146366,0.853634, maf-5-some-pop 622 chr1 4881266 4881267 rs12122126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2977.000000,2031.000000, 0.594449,0.405551, maf-5-some-pop,maf-5-all-pops 622 chr1 4881399 4881400 rs10915617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop 622 chr1 4882038 4882039 rs12117810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1824.000000,3184.000000, 0.364217,0.635783, maf-5-some-pop 622 chr1 4882655 4882656 rs1883345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,genotype-conflict 622 chr1 4883094 4883095 rs1883347 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3496.000000,1512.000000, 0.698083,0.301917, maf-5-some-pop,maf-5-all-pops 622 chr1 4887386 4887387 rs12063965 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 622 chr1 4888722 4888723 rs12028621 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop 622 chr1 4889603 4889604 rs10799265 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 622 chr1 4889911 4889912 rs12028290 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 622 chr1 4891602 4891603 rs2025379 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2874.000000,2134.000000,2134.000000,2874.000000, 0.286941,0.213059,0.213059,0.286941, maf-5-some-pop,maf-5-all-pops 622 chr1 4894143 4894144 rs12742986 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop,genotype-conflict 622 chr1 4896239 4896240 rs12127053 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop,genotype-conflict 622 chr1 4896260 4896261 rs12072038 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 622 chr1 4897566 4897567 rs12118185 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 622 chr1 4897643 4897644 rs11576972 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 10.000000,1085.000000,3913.000000, 0.001997,0.216653,0.781350, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4901141 4901142 rs12124406 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2006.000000,3002.000000, 0.400559,0.599441, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4901736 4901737 rs7527319 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3508.000000,1500.000000, 0.700479,0.299521, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4906357 4906358 rs11805663 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3534.000000,1474.000000, 0.705671,0.294329, maf-5-some-pop,maf-5-all-pops 622 chr1 4907702 4907703 rs11582327 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, maf-5-some-pop,maf-5-all-pops 622 chr1 4909706 4909707 rs11582936 0 + A A A/C genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2946.000000,2062.000000, 0.588259,0.411741, maf-5-some-pop,maf-5-all-pops 622 chr1 4910370 4910371 rs12034948 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4911171 4911172 rs6693945 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2222.000000,2786.000000, 0.443690,0.556310, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4912725 4912726 rs7549868 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4912882 4912883 rs7552804 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4914909 4914910 rs6426440 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3569.000000,1439.000000, 0.712660,0.287340, maf-5-some-pop,maf-5-all-pops 622 chr1 4916604 4916605 rs1535736 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2698.000000,2310.000000,2310.000000,2698.000000, 0.269369,0.230631,0.230631,0.269369, maf-5-some-pop,maf-5-all-pops 622 chr1 4916905 4916906 rs1535734 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2268.000000,2740.000000,2740.000000,2268.000000, 0.226438,0.273562,0.273562,0.226438, maf-5-some-pop,maf-5-all-pops 622 chr1 4928867 4928868 rs12567053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop,genotype-conflict 622 chr1 4930180 4930181 rs1886112 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1796.000000,3212.000000,3212.000000,1796.000000, 0.179313,0.320687,0.320687,0.179313, maf-5-some-pop,maf-5-all-pops 622 chr1 4933153 4933154 rs12094945 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1251.000000,3757.000000, 0.249800,0.750200, maf-5-some-pop,maf-5-all-pops 622 chr1 4933234 4933235 rs10489136 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1007.000000,4001.000000, 0.201078,0.798922, maf-5-some-pop 622 chr1 4933494 4933495 rs10489137 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 622 chr1 4934066 4934067 rs10489138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 622 chr1 4943522 4943523 rs7548372 0 + C C A/C genomic single unknown 0 0 unknown exact 1 MixedObserved 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3019.000000,1989.000000, 0.602835,0.397165, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4945480 4945481 rs6658585 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 622 chr1 4951564 4951565 rs4654464 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop 622 chr1 4953527 4953528 rs16839786 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3691.000000,1317.000000, 0.737021,0.262979, maf-5-some-pop,maf-5-all-pops 622 chr1 4957127 4957128 rs16839792 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4958101 4958102 rs4654620 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3744.000000,1264.000000, 0.747604,0.252396, maf-5-some-pop 622 chr1 4958938 4958939 rs10915656 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop,maf-5-all-pops 622 chr1 4959785 4959786 rs2031246 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1535.000000,3473.000000,3473.000000,1535.000000, 0.153255,0.346745,0.346745,0.153255, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 622 chr1 4960910 4960911 rs1998542 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4109.000000,899.000000,899.000000,4109.000000, 0.410244,0.089756,0.089756,0.410244, maf-5-some-pop,maf-5-all-pops 622 chr1 4962568 4962569 rs4654622 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1658.000000,3350.000000, 0.331070,0.668930, maf-5-some-pop,maf-5-all-pops 622 chr1 4963636 4963637 rs7524606 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop,maf-5-all-pops,genotype-conflict 622 chr1 4964004 4964005 rs1980722 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 3791.000000,1217.000000,1217.000000,3791.000000, 0.378494,0.121506,0.121506,0.378494, maf-5-some-pop,genotype-conflict 622 chr1 4967738 4967739 rs7520488 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop,maf-5-all-pops 622 chr1 4967975 4967976 rs10753391 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3233.000000,1775.000000, 0.645567,0.354433, maf-5-some-pop,maf-5-all-pops 622 chr1 4970121 4970122 rs10915666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1779.000000,3229.000000, 0.355232,0.644768, maf-5-some-pop,genotype-conflict 622 chr1 4971216 4971217 rs2209159 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TSC-CSHL, 4 A,C,G,T, 1077.000000,3931.000000,3931.000000,1077.000000, 0.107528,0.392472,0.392472,0.107528, maf-5-some-pop 622 chr1 4971506 4971507 rs12034557 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4382.000000,626.000000, 0.875000,0.125000, maf-5-some-pop 622 chr1 4972185 4972186 rs41524347 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4323.000000,685.000000,685.000000,4323.000000, 0.431609,0.068391,0.068391,0.431609, maf-5-some-pop 622 chr1 4973106 4973107 rs11805753 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop,maf-5-all-pops 622 chr1 4973300 4973301 rs10915668 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2906.000000,2102.000000, 0.580272,0.419728, maf-5-some-pop,maf-5-all-pops 622 chr1 4975416 4975417 rs10915670 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop,microattr-tpa,genotype-conflict 622 chr1 4980691 4980692 rs12035499 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 757.000000,4251.000000, 0.151158,0.848842, maf-5-some-pop,maf-5-all-pops 623 chr1 4982385 4982386 rs6698453 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4983216 4983217 rs10915671 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 710.000000,4298.000000, 0.141773,0.858227, maf-5-some-pop 623 chr1 4983478 4983479 rs12043326 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 737.000000,4271.000000, 0.147165,0.852835, maf-5-some-pop,maf-5-all-pops 623 chr1 4983797 4983798 rs4141867 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2083.000000,2925.000000,2925.000000,2083.000000, 0.207967,0.292033,0.292033,0.207967, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4984371 4984372 rs1535733 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3994.000000,1014.000000,1014.000000,3994.000000, 0.398762,0.101238,0.101238,0.398762, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4984666 4984667 rs6666792 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 623 chr1 4984881 4984882 rs2093765 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2100.000000,2908.000000,2908.000000,2100.000000, 0.209665,0.290335,0.290335,0.209665, maf-5-some-pop,maf-5-all-pops 623 chr1 4984993 4984994 rs2411955 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 379.000000,4629.000000, 0.075679,0.924321, maf-5-some-pop 623 chr1 4985768 4985769 rs10915675 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop,maf-5-all-pops 623 chr1 4986305 4986306 rs1886110 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4463.000000,545.000000,545.000000,4463.000000, 0.445587,0.054413,0.054413,0.445587, maf-5-some-pop 623 chr1 4986434 4986435 rs4529681 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop,genotype-conflict 623 chr1 4986469 4986470 rs2411956 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 G,T, 4262.000000,746.000000, 0.851038,0.148962, maf-5-some-pop 623 chr1 4986507 4986508 rs4644459 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop,genotype-conflict 623 chr1 4987423 4987424 rs6666453 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1227.000000,3781.000000, 0.245008,0.754992, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4991217 4991218 rs10915677 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop,maf-5-all-pops 623 chr1 4994451 4994452 rs12409253 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 637.000000,4371.000000, 0.127196,0.872804, maf-5-some-pop 623 chr1 4995025 4995026 rs12049256 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2036.000000,2972.000000, 0.406550,0.593450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4996184 4996185 rs10915683 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2970.000000,2038.000000, 0.593051,0.406949, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4996274 4996275 rs12045266 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 3687.000000,1321.000000, 0.736222,0.263778, maf-5-some-pop,maf-5-all-pops 623 chr1 4996306 4996307 rs12048035 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,G, 3674.000000,1334.000000, 0.733626,0.266374, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 4998384 4998385 rs9426468 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3083.000000,1925.000000, 0.615615,0.384385, maf-5-some-pop,maf-5-all-pops 623 chr1 5001646 5001647 rs16839877 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 623 chr1 5001808 5001809 rs17349719 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,G, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop 623 chr1 5002052 5002053 rs12042532 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5002169 5002170 rs12041887 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop 623 chr1 5002366 5002367 rs7555212 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2091.000000,2917.000000, 0.417532,0.582468, maf-5-some-pop,genotype-conflict 623 chr1 5002625 5002626 rs6426368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2502.000000,2506.000000, 0.499601,0.500399, maf-5-some-pop,maf-5-all-pops 623 chr1 5002712 5002713 rs6669905 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5003146 5003147 rs6678838 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3212.000000,1796.000000, 0.641374,0.358626, maf-5-some-pop,maf-5-all-pops 623 chr1 5003664 5003665 rs6426370 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 G,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop 623 chr1 5005479 5005480 rs7531490 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5005774 5005775 rs7534281 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3080.000000,1928.000000, 0.615016,0.384984, maf-5-some-pop,maf-5-all-pops 623 chr1 5007234 5007235 rs10915296 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2188.000000,2820.000000, 0.436901,0.563099, maf-5-some-pop,maf-5-all-pops 623 chr1 5010141 5010142 rs10915297 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1611.000000,3397.000000, 0.321685,0.678315, maf-5-some-pop,maf-5-all-pops 623 chr1 5010987 5010988 rs6664358 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,maf-5-all-pops 623 chr1 5011289 5011290 rs12403612 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 623 chr1 5011309 5011310 rs12411011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop 623 chr1 5012037 5012038 rs7522655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1466.000000,3542.000000, 0.292732,0.707268, maf-5-some-pop,maf-5-all-pops 623 chr1 5012100 5012101 rs7544541 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2037.000000,2971.000000, 0.406749,0.593251, maf-5-some-pop,maf-5-all-pops 623 chr1 5012300 5012301 rs10915298 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 635.000000,4373.000000, 0.126797,0.873203, maf-5-some-pop 623 chr1 5012354 5012355 rs12410485 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop,genotype-conflict 623 chr1 5015466 5015467 rs6693486 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1458.000000,3550.000000, 0.291134,0.708866, maf-5-some-pop,maf-5-all-pops 623 chr1 5017651 5017652 rs12029491 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop 623 chr1 5018077 5018078 rs12404173 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 623 chr1 5021199 5021200 rs10799145 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2345.000000,2663.000000, 0.468251,0.531749, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5022766 5022767 rs12119864 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 379.000000,4629.000000, 0.075679,0.924321, maf-5-some-pop 623 chr1 5022943 5022944 rs7554632 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 623 chr1 5023429 5023430 rs6702660 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 898.000000,4110.000000, 0.179313,0.820687, maf-5-some-pop,genotype-conflict 623 chr1 5023598 5023599 rs12741441 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3928.000000,1080.000000, 0.784345,0.215655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5025138 5025139 rs3101220 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop 623 chr1 5030659 5030660 rs7525837 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,genotype-conflict 623 chr1 5031378 5031379 rs10799149 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop 623 chr1 5031560 5031561 rs7518523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3179.000000,1829.000000, 0.634784,0.365216, maf-5-some-pop,maf-5-all-pops 623 chr1 5035187 5035188 rs10915303 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop 623 chr1 5037811 5037812 rs6666330 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3154.000000,1854.000000, 0.629792,0.370208, maf-5-some-pop,maf-5-all-pops 623 chr1 5038050 5038051 rs12739724 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 769.000000,4239.000000, 0.153554,0.846446, maf-5-some-pop 623 chr1 5039092 5039093 rs6657381 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3904.000000,1104.000000, 0.779553,0.220447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5039379 5039380 rs1841241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3630.000000,1378.000000, 0.724840,0.275160, maf-5-some-pop,maf-5-all-pops 623 chr1 5042265 5042266 rs2334268 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 171.000000,4837.000000,4837.000000,171.000000, 0.017073,0.482927,0.482927,0.017073, maf-5-some-pop,genotype-conflict 623 chr1 5047037 5047038 rs6679312 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 623 chr1 5048623 5048624 rs7541612 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 623 chr1 5048714 5048715 rs9426492 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop,maf-5-all-pops 623 chr1 5048933 5048934 rs10737392 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop 623 chr1 5051231 5051232 rs12725971 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3719.000000,1289.000000, 0.742612,0.257388, maf-5-some-pop 623 chr1 5051304 5051305 rs7367766 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1884.000000,3124.000000, 0.376198,0.623802, maf-5-some-pop,maf-5-all-pops 623 chr1 5051632 5051633 rs10799150 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop,maf-5-all-pops 623 chr1 5051709 5051710 rs6683624 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop,genotype-conflict 623 chr1 5053100 5053101 rs1459753 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 2 A,G, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,genotype-conflict 623 chr1 5055186 5055187 rs1117325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 4963.000000,45.000000, 0.991014,0.008986, maf-5-some-pop 623 chr1 5055603 5055604 rs1459754 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,maf-5-all-pops 623 chr1 5061518 5061519 rs10158288 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3009.000000,1999.000000, 0.600839,0.399161, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5062187 5062188 rs11808607 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 623 chr1 5063292 5063293 rs10915307 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1374.000000,3634.000000, 0.274361,0.725639, maf-5-some-pop,maf-5-all-pops 623 chr1 5064204 5064205 rs10737393 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2968.000000,2040.000000, 0.592652,0.407348, maf-5-some-pop,maf-5-all-pops 623 chr1 5065588 5065589 rs10915308 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2574.000000,2434.000000, 0.513978,0.486022, maf-5-some-pop,maf-5-all-pops 623 chr1 5065849 5065850 rs10915309 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2543.000000,2465.000000, 0.507788,0.492212, maf-5-some-pop,maf-5-all-pops 623 chr1 5068209 5068210 rs10915310 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3241.000000,1767.000000, 0.647165,0.352835, maf-5-some-pop,maf-5-all-pops,genotype-conflict 623 chr1 5068244 5068245 rs10799151 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3167.000000,1841.000000, 0.632388,0.367612, maf-5-some-pop,maf-5-all-pops 623 chr1 5073091 5073092 rs9286975 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop,maf-5-all-pops 623 chr1 5073154 5073155 rs9662653 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops 623 chr1 5076321 5076322 rs10915314 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop 623 chr1 5077551 5077552 rs12047764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1292.000000,3716.000000, 0.257987,0.742013, maf-5-some-pop,maf-5-all-pops 623 chr1 5078938 5078939 rs10915316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 623 chr1 5080432 5080433 rs6689504 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop,maf-5-all-pops 623 chr1 5081065 5081066 rs10915317 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1048.000000,3960.000000, 0.209265,0.790735, maf-5-some-pop 623 chr1 5088616 5088617 rs2169089 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1071.000000,3937.000000,3937.000000,1071.000000, 0.106929,0.393071,0.393071,0.106929, maf-5-some-pop 623 chr1 5088993 5088994 rs720318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TSC-CSHL, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,genotype-conflict 623 chr1 5090714 5090715 rs1459764 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3898.000000,1110.000000,1110.000000,3898.000000, 0.389177,0.110823,0.110823,0.389177, maf-5-some-pop,genotype-conflict 623 chr1 5093740 5093741 rs1563793 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 623 chr1 5094702 5094703 rs1459763 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3579.000000,1429.000000,1429.000000,3579.000000, 0.357328,0.142672,0.142672,0.357328, maf-5-some-pop 623 chr1 5097353 5097354 rs10915322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 848.000000,4160.000000, 0.169329,0.830671, maf-5-some-pop,maf-5-all-pops 623 chr1 5097534 5097535 rs7538599 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop 623 chr1 5102143 5102144 rs12403444 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 624 chr1 5112056 5112057 rs12759849 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 3 A,C,G, 134.000000,887.000000,3987.000000, 0.026757,0.177117,0.796126, maf-5-some-pop,maf-5-all-pops 624 chr1 5114552 5114553 rs3128685 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 624 chr1 5121062 5121063 rs970119 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1613.000000,3395.000000,3395.000000,1613.000000, 0.161042,0.338958,0.338958,0.161042, maf-5-some-pop 624 chr1 5122609 5122610 rs1380472 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4170.000000,838.000000,838.000000,4170.000000, 0.416334,0.083666,0.083666,0.416334, maf-5-some-pop,maf-5-all-pops 624 chr1 5127542 5127543 rs6603832 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1989.000000,3019.000000, 0.397165,0.602835, maf-5-some-pop,maf-5-all-pops 624 chr1 5134630 5134631 rs1599169 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,EVA-GONL,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 176.000000,4832.000000,4832.000000,176.000000, 0.017572,0.482428,0.482428,0.017572, maf-5-some-pop,microattr-tpa,genotype-conflict 624 chr1 5137665 5137666 rs10915336 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5140225 5140226 rs11590026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 830.000000,4178.000000, 0.165735,0.834265, maf-5-some-pop 624 chr1 5141292 5141293 rs3128687 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2270.000000,2738.000000, 0.453275,0.546725, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5141639 5141640 rs3128689 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3866.000000,1142.000000, 0.771965,0.228035, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5142980 5142981 rs1841240 0 - A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 624 chr1 5143243 5143244 rs10799159 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2829.000000,2179.000000, 0.564896,0.435104, maf-5-some-pop,maf-5-all-pops 624 chr1 5145065 5145066 rs6680801 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop,genotype-conflict 624 chr1 5145462 5145463 rs12120144 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop,maf-5-all-pops 624 chr1 5146070 5146071 rs10915342 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop 624 chr1 5148684 5148685 rs10915343 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2512.000000,2496.000000, 0.501597,0.498403, maf-5-some-pop,maf-5-all-pops 624 chr1 5150459 5150460 rs12723011 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 A,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop,genotype-conflict 624 chr1 5151475 5151476 rs2199215 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2504.000000,2504.000000,2504.000000,2504.000000, 0.250000,0.250000,0.250000,0.250000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5152158 5152159 rs12121092 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3550.000000,1458.000000, 0.708866,0.291134, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5156244 5156245 rs3101225 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4480.000000,528.000000,528.000000,4480.000000, 0.447284,0.052716,0.052716,0.447284, maf-5-some-pop 624 chr1 5157177 5157178 rs12405346 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,G, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop 624 chr1 5160730 5160731 rs1459766 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1038.000000,3970.000000,3970.000000,1038.000000, 0.103634,0.396366,0.396366,0.103634, maf-5-some-pop,genotype-conflict 624 chr1 5170641 5170642 rs7513500 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 624 chr1 5170711 5170712 rs7513590 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,maf-5-all-pops,microattr-tpa 624 chr1 5173803 5173804 rs2611423 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4155.000000,853.000000, 0.829673,0.170327, maf-5-some-pop 624 chr1 5179805 5179806 rs6701939 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4256.000000,752.000000, 0.849840,0.150160, maf-5-some-pop,genotype-conflict 624 chr1 5183811 5183812 rs4949166 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1012.000000,3996.000000,3996.000000,1012.000000, 0.101038,0.398962,0.398962,0.101038, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5183924 5183925 rs4356099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 624 chr1 5188953 5188954 rs12756944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop 624 chr1 5192702 5192703 rs6671889 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 2556.000000,2452.000000, 0.510383,0.489617, maf-5-some-pop,maf-5-all-pops 624 chr1 5192748 5192749 rs4949165 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5193025 5193026 rs10492923 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop,microattr-tpa,genotype-conflict 624 chr1 5193115 5193116 rs10492924 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop 624 chr1 5193672 5193673 rs9439505 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3614.000000,1394.000000, 0.721645,0.278355, maf-5-some-pop,maf-5-all-pops 624 chr1 5194220 5194221 rs16840024 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 624 chr1 5195166 5195167 rs10737397 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1060.000000,3948.000000, 0.211661,0.788339, maf-5-some-pop 624 chr1 5195250 5195251 rs12409689 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop,genotype-conflict 624 chr1 5195316 5195317 rs12122020 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5195370 5195371 rs10492925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 624 chr1 5195381 5195382 rs12045223 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop 624 chr1 5197950 5197951 rs10799172 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop 624 chr1 5197976 5197977 rs10799173 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,genotype-conflict 624 chr1 5198788 5198789 rs16840051 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3405.000000,1603.000000, 0.679912,0.320088, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5200508 5200509 rs6681148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 624 chr1 5200731 5200732 rs6681359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,genotype-conflict 624 chr1 5200874 5200875 rs12401618 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop 624 chr1 5206444 5206445 rs9439509 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop 624 chr1 5206638 5206639 rs4345839 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1026.000000,3982.000000, 0.204872,0.795128, maf-5-some-pop,genotype-conflict 624 chr1 5209243 5209244 rs12025231 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop 624 chr1 5210123 5210124 rs12121369 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop,maf-5-all-pops 624 chr1 5211133 5211134 rs10753353 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop 624 chr1 5211337 5211338 rs12027352 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3232.000000,1776.000000, 0.645367,0.354633, maf-5-some-pop,maf-5-all-pops 624 chr1 5214522 5214523 rs7517431 0 + C C C/G genomic single unknown 0 0 unknown exact 1 MixedObserved 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops 624 chr1 5215735 5215736 rs9439538 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop 624 chr1 5222074 5222075 rs6668830 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4160.000000,848.000000, 0.830671,0.169329, maf-5-some-pop,maf-5-all-pops 624 chr1 5222144 5222145 rs12059743 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 624 chr1 5222595 5222596 rs10915365 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2367.000000,2641.000000, 0.472644,0.527356, maf-5-some-pop 624 chr1 5223181 5223182 rs12026730 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop 624 chr1 5226751 5226752 rs6675995 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4181.000000,827.000000, 0.834864,0.165136, maf-5-some-pop 624 chr1 5229408 5229409 rs11583683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops 624 chr1 5229464 5229465 rs16840076 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 624 chr1 5230745 5230746 rs4076635 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1696.000000,3312.000000, 0.338658,0.661342, maf-5-some-pop,genotype-conflict 624 chr1 5231891 5231892 rs4394703 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop 624 chr1 5234334 5234335 rs7545119 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop 625 chr1 5245817 5245818 rs12038986 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 914.000000,4094.000000, 0.182508,0.817492, maf-5-some-pop 625 chr1 5246625 5246626 rs17366838 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4274.000000,734.000000, 0.853435,0.146565, maf-5-some-pop,maf-5-all-pops 625 chr1 5247081 5247082 rs10492930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3677.000000,1331.000000, 0.734225,0.265775, maf-5-some-pop 625 chr1 5247354 5247355 rs10492931 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop 625 chr1 5250496 5250497 rs10915375 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop,maf-5-all-pops 625 chr1 5250904 5250905 rs9439543 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4230.000000,778.000000, 0.844649,0.155351, maf-5-some-pop 625 chr1 5253435 5253436 rs12041491 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 996.000000,4012.000000, 0.198882,0.801118, maf-5-some-pop 625 chr1 5253531 5253532 rs12083008 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 783.000000,4225.000000, 0.156350,0.843650, maf-5-some-pop,genotype-conflict 625 chr1 5253544 5253545 rs10492932 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop 625 chr1 5253663 5253664 rs7536712 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3398.000000,1610.000000, 0.678514,0.321486, maf-5-some-pop 625 chr1 5253917 5253918 rs10492933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 625 chr1 5256773 5256774 rs1320179 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2076.000000,2932.000000, 0.414537,0.585463, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5258555 5258556 rs2722782 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,genotype-conflict 625 chr1 5259063 5259064 rs16840160 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,C, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,genotype-conflict 625 chr1 5260706 5260707 rs17375672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop 625 chr1 5260756 5260757 rs12136793 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 808.000000,4200.000000, 0.161342,0.838658, maf-5-some-pop,genotype-conflict 625 chr1 5264516 5264517 rs2722787 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop 625 chr1 5264696 5264697 rs12043987 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4502.000000,506.000000, 0.898962,0.101038, maf-5-some-pop,genotype-conflict 625 chr1 5270276 5270277 rs12140099 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3537.000000,1471.000000, 0.706270,0.293730, maf-5-some-pop,maf-5-all-pops 625 chr1 5278634 5278635 rs7533885 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3560.000000,1448.000000, 0.710863,0.289137, maf-5-some-pop,maf-5-all-pops 625 chr1 5281674 5281675 rs7511635 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3460.000000,1548.000000, 0.690895,0.309105, maf-5-some-pop,maf-5-all-pops 625 chr1 5288558 5288559 rs35457436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop 625 chr1 5293364 5293365 rs12031466 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop 625 chr1 5295775 5295776 rs4847562 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4468.000000,540.000000,540.000000,4468.000000, 0.446086,0.053914,0.053914,0.446086, maf-5-some-pop,genotype-conflict 625 chr1 5297844 5297845 rs473104 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2230.000000,2778.000000,2778.000000,2230.000000, 0.222644,0.277356,0.277356,0.222644, maf-5-some-pop,maf-5-all-pops 625 chr1 5297886 5297887 rs586165 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1486.000000,3522.000000,3522.000000,1486.000000, 0.148363,0.351637,0.351637,0.148363, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5302168 5302169 rs534188 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3105.000000,1903.000000,1903.000000,3105.000000, 0.310004,0.189996,0.189996,0.310004, maf-5-some-pop,maf-5-all-pops 625 chr1 5302314 5302315 rs12125575 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1054.000000,3954.000000, 0.210463,0.789537, maf-5-some-pop 625 chr1 5303370 5303371 rs480807 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3100.000000,1908.000000,1908.000000,3100.000000, 0.309505,0.190495,0.190495,0.309505, maf-5-some-pop,maf-5-all-pops 625 chr1 5303445 5303446 rs6687834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop 625 chr1 5307765 5307766 rs6704207 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2679.000000,2329.000000, 0.534944,0.465056, maf-5-some-pop,maf-5-all-pops 625 chr1 5308256 5308257 rs571977 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2679.000000,2329.000000, 0.534944,0.465056, maf-5-some-pop,maf-5-all-pops 625 chr1 5309254 5309255 rs7534404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1575.000000,3433.000000, 0.314497,0.685503, maf-5-some-pop,maf-5-all-pops 625 chr1 5309666 5309667 rs12135834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3583.000000,1425.000000, 0.715455,0.284545, maf-5-some-pop,genotype-conflict 625 chr1 5309896 5309897 rs12128282 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1540.000000,3468.000000, 0.307508,0.692492, maf-5-some-pop,maf-5-all-pops 625 chr1 5310579 5310580 rs10915396 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1738.000000,3270.000000, 0.347045,0.652955, maf-5-some-pop,maf-5-all-pops 625 chr1 5310608 5310609 rs6686714 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop 625 chr1 5315320 5315321 rs16840287 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop 625 chr1 5315480 5315481 rs16840289 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1082.000000,3926.000000, 0.216054,0.783946, maf-5-some-pop 625 chr1 5318070 5318071 rs4847582 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 625 chr1 5318181 5318182 rs4847581 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 625 chr1 5318551 5318552 rs12089315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3850.000000,1158.000000, 0.768770,0.231230, maf-5-some-pop 625 chr1 5318782 5318783 rs2945618 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 17 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3473.000000,1535.000000, 0.693490,0.306510, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5321138 5321139 rs630153 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1551.000000,3457.000000, 0.309704,0.690296, maf-5-some-pop,maf-5-all-pops 625 chr1 5322217 5322218 rs972257 0 - T T A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 625 chr1 5323428 5323429 rs17456252 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1151.000000,3857.000000, 0.229832,0.770168, maf-5-some-pop,maf-5-all-pops 625 chr1 5323588 5323589 rs7528370 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop 625 chr1 5324230 5324231 rs499416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2493.000000,2515.000000, 0.497804,0.502196, maf-5-some-pop,maf-5-all-pops 625 chr1 5325723 5325724 rs12139398 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4258.000000,750.000000, 0.850240,0.149760, maf-5-some-pop 625 chr1 5325923 5325924 rs648378 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2406.000000,2602.000000, 0.480431,0.519569, maf-5-some-pop,maf-5-all-pops 625 chr1 5326049 5326050 rs536995 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3232.000000,1776.000000, 0.645367,0.354633, maf-5-some-pop,maf-5-all-pops 625 chr1 5326333 5326334 rs646542 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1819.000000,3189.000000,3189.000000,1819.000000, 0.181609,0.318391,0.318391,0.181609, maf-5-some-pop,maf-5-all-pops 625 chr1 5330238 5330239 rs493993 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 625 chr1 5330285 5330286 rs494138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2910.000000,2098.000000, 0.581070,0.418930, maf-5-some-pop,maf-5-all-pops 625 chr1 5330414 5330415 rs495765 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3919.000000,1089.000000, 0.782548,0.217452, maf-5-some-pop,maf-5-all-pops 625 chr1 5332364 5332365 rs4847579 0 - A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 625 chr1 5332816 5332817 rs10799189 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1142.000000,3866.000000, 0.228035,0.771965, maf-5-some-pop 625 chr1 5333478 5333479 rs598031 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3715.000000,1293.000000,1293.000000,3715.000000, 0.370907,0.129093,0.129093,0.370907, maf-5-some-pop 625 chr1 5334078 5334079 rs584938 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3906.000000,1102.000000,1102.000000,3906.000000, 0.389976,0.110024,0.110024,0.389976, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5334413 5334414 rs583170 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1879.000000,3129.000000,3129.000000,1879.000000, 0.187600,0.312400,0.312400,0.187600, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5334935 5334936 rs12729227 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 625 chr1 5337097 5337098 rs573318 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2775.000000,2233.000000, 0.554113,0.445887, maf-5-some-pop,maf-5-all-pops 625 chr1 5337491 5337492 rs613882 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2623.000000,2385.000000, 0.523762,0.476238, maf-5-some-pop,maf-5-all-pops 625 chr1 5337744 5337745 rs615185 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1295.000000,3713.000000, 0.258586,0.741414, maf-5-some-pop 625 chr1 5338211 5338212 rs17457350 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3723.000000,1285.000000, 0.743411,0.256589, maf-5-some-pop,genotype-conflict 625 chr1 5341113 5341114 rs17423513 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 625 chr1 5341231 5341232 rs10492935 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop,genotype-conflict 625 chr1 5341463 5341464 rs17423547 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1025.000000,3983.000000, 0.204673,0.795327, maf-5-some-pop,genotype-conflict 625 chr1 5343827 5343828 rs10915404 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,genotype-conflict 625 chr1 5346473 5346474 rs557477 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops 625 chr1 5346799 5346800 rs560335 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop,maf-5-all-pops 625 chr1 5347438 5347439 rs565941 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2214.000000,2794.000000, 0.442093,0.557907, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5352491 5352492 rs7530063 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 625 chr1 5352547 5352548 rs7516132 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 625 chr1 5353008 5353009 rs4287614 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop 625 chr1 5357170 5357171 rs9439550 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2726.000000,2282.000000, 0.544329,0.455671, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5358737 5358738 rs7518506 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop 625 chr1 5359497 5359498 rs11579529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 625 chr1 5362291 5362292 rs9439551 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3086.000000,1922.000000, 0.616214,0.383786, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5362344 5362345 rs11579000 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 625 chr1 5364633 5364634 rs9439519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1827.000000,3181.000000, 0.364816,0.635184, maf-5-some-pop,maf-5-all-pops 625 chr1 5368588 5368589 rs9439521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5368746 5368747 rs9439522 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2743.000000,2265.000000, 0.547724,0.452276, maf-5-some-pop,maf-5-all-pops 625 chr1 5368768 5368769 rs9439523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2265.000000,2743.000000, 0.452276,0.547724, maf-5-some-pop,maf-5-all-pops 625 chr1 5369176 5369177 rs9439525 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2741.000000,2267.000000, 0.547324,0.452676, maf-5-some-pop,maf-5-all-pops 625 chr1 5369797 5369798 rs9439527 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 625 chr1 5371578 5371579 rs10915413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2295.000000,2713.000000, 0.458267,0.541733, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5371933 5371934 rs4478820 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2283.000000,2725.000000, 0.455871,0.544129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 625 chr1 5372500 5372501 rs16840503 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop 625 chr1 5373365 5373366 rs10915414 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 504.000000,4504.000000, 0.100639,0.899361, maf-5-some-pop 626 chr1 5374052 5374053 rs9439563 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2645.000000,2363.000000, 0.528155,0.471845, maf-5-some-pop,maf-5-all-pops 626 chr1 5383442 5383443 rs6662148 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop 626 chr1 5384327 5384328 rs4847565 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 2600.000000,2408.000000,2408.000000,2600.000000, 0.259585,0.240415,0.240415,0.259585, maf-5-some-pop,maf-5-all-pops 626 chr1 5386596 5386597 rs874995 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2420.000000,2588.000000, 0.483227,0.516773, maf-5-some-pop,maf-5-all-pops 626 chr1 5390185 5390186 rs9439530 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3526.000000,1482.000000, 0.704073,0.295927, maf-5-some-pop,maf-5-all-pops 626 chr1 5390208 5390209 rs16840538 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop 626 chr1 5390277 5390278 rs4847564 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2597.000000,2411.000000,2411.000000,2597.000000, 0.259285,0.240715,0.240715,0.259285, maf-5-some-pop,maf-5-all-pops 626 chr1 5390577 5390578 rs11576342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,genotype-conflict 626 chr1 5392079 5392080 rs12085538 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 626 chr1 5402869 5402870 rs10799197 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop,maf-5-all-pops 626 chr1 5403584 5403585 rs1326005 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 995.000000,4013.000000,4013.000000,995.000000, 0.099341,0.400659,0.400659,0.099341, maf-5-some-pop,genotype-conflict 626 chr1 5408888 5408889 rs11587319 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop,genotype-conflict 626 chr1 5410348 5410349 rs7552583 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop 626 chr1 5410541 5410542 rs4129058 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2820.000000,2188.000000,2188.000000,2820.000000, 0.281550,0.218450,0.218450,0.281550, maf-5-some-pop 626 chr1 5411432 5411433 rs12410822 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops 626 chr1 5421532 5421533 rs7364349 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop 626 chr1 5421603 5421604 rs7512133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 626 chr1 5424666 5424667 rs11583534 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 626 chr1 5425108 5425109 rs11583605 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 626 chr1 5463936 5463937 rs11801490 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3230.000000,1778.000000, 0.644968,0.355032, maf-5-some-pop,maf-5-all-pops 626 chr1 5467078 5467079 rs11582304 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 485.000000,4523.000000, 0.096845,0.903155, maf-5-some-pop 626 chr1 5467214 5467215 rs11582323 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 405.000000,4603.000000, 0.080871,0.919129, maf-5-some-pop 626 chr1 5471516 5471517 rs7418357 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 626 chr1 5475258 5475259 rs11587457 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1098.000000,3910.000000, 0.219249,0.780751, maf-5-some-pop,maf-5-all-pops 626 chr1 5475331 5475332 rs6603834 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 3 A,C,G, 745.000000,26.000000,4237.000000, 0.148762,0.005192,0.846046, maf-5-some-pop 626 chr1 5475500 5475501 rs11260639 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 626 chr1 5475580 5475581 rs11576458 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,genotype-conflict 626 chr1 5475597 5475598 rs11576460 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops,genotype-conflict 626 chr1 5475662 5475663 rs6603835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2855.000000,2153.000000, 0.570088,0.429912, maf-5-some-pop,maf-5-all-pops 626 chr1 5478586 5478587 rs11260646 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3246.000000,1762.000000, 0.648163,0.351837, maf-5-some-pop,maf-5-all-pops 626 chr1 5478900 5478901 rs6688540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2121.000000,2887.000000, 0.423522,0.576478, maf-5-some-pop,maf-5-all-pops 626 chr1 5480100 5480101 rs6603839 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2044.000000,2964.000000, 0.408147,0.591853, maf-5-some-pop,maf-5-all-pops 626 chr1 5480259 5480260 rs2355 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 2 C,T, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop 626 chr1 5491500 5491501 rs7415936 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2154.000000,2854.000000, 0.430112,0.569888, maf-5-some-pop 626 chr1 5492042 5492043 rs10907211 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1442.000000,3566.000000, 0.287939,0.712061, maf-5-some-pop,maf-5-all-pops 626 chr1 5493391 5493392 rs12724170 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2010.000000,2998.000000, 0.401358,0.598642, maf-5-some-pop,maf-5-all-pops 626 chr1 5502721 5502722 rs6689364 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 627 chr1 5520870 5520871 rs7538250 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 627 chr1 5532100 5532101 rs12566922 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop 627 chr1 5540322 5540323 rs17028061 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop 627 chr1 5542668 5542669 rs10796404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1438.000000,3570.000000, 0.287141,0.712859, maf-5-some-pop,maf-5-all-pops 627 chr1 5544658 5544659 rs9787315 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5544822 5544823 rs12046983 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 627 chr1 5545278 5545279 rs17028069 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4161.000000,847.000000, 0.830871,0.169129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5549117 5549118 rs12030717 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3952.000000,1056.000000, 0.789137,0.210863, maf-5-some-pop,maf-5-all-pops 627 chr1 5549444 5549445 rs12126301 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop 627 chr1 5551232 5551233 rs12120052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop,maf-5-all-pops 627 chr1 5555418 5555419 rs2071956 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2320.000000,2688.000000, 0.463259,0.536741, maf-5-some-pop,maf-5-all-pops 627 chr1 5555528 5555529 rs2071957 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4139.000000,869.000000, 0.826478,0.173522, maf-5-some-pop 627 chr1 5555683 5555684 rs2071958 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4157.000000,851.000000, 0.830072,0.169928, maf-5-some-pop 627 chr1 5559248 5559249 rs10796408 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3660.000000,1348.000000, 0.730831,0.269169, maf-5-some-pop,genotype-conflict 627 chr1 5561562 5561563 rs17028122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop,maf-5-all-pops 627 chr1 5562107 5562108 rs17028129 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop 627 chr1 5562368 5562369 rs17028133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2359.000000,2649.000000, 0.471046,0.528954, maf-5-some-pop,maf-5-all-pops 627 chr1 5562810 5562811 rs12023966 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 627 chr1 5563418 5563419 rs17028141 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 627 chr1 5563586 5563587 rs12123786 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop,genotype-conflict 627 chr1 5569490 5569491 rs12128558 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop,maf-5-all-pops 627 chr1 5570863 5570864 rs2213779 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,G, 4964.000000,44.000000, 0.991214,0.008786, maf-5-some-pop 627 chr1 5571049 5571050 rs2213780 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,TSC-CSHL, 2 A,G, 3255.000000,1753.000000, 0.649960,0.350040, maf-5-some-pop 627 chr1 5571355 5571356 rs9730430 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop,genotype-conflict 627 chr1 5571858 5571859 rs12033085 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 627 chr1 5572036 5572037 rs1540325 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop 627 chr1 5572075 5572076 rs10796398 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1098.000000,3910.000000, 0.219249,0.780751, maf-5-some-pop,maf-5-all-pops 627 chr1 5572303 5572304 rs9729649 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1613.000000,3395.000000, 0.322085,0.677915, maf-5-some-pop,maf-5-all-pops 627 chr1 5582557 5582558 rs13376005 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,genotype-conflict 627 chr1 5582773 5582774 rs17028184 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 627 chr1 5584013 5584014 rs1967969 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 627 chr1 5585214 5585215 rs2008457 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 489.000000,4519.000000, 0.097644,0.902356, maf-5-some-pop 627 chr1 5585858 5585859 rs11260636 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,genotype-conflict 627 chr1 5592798 5592799 rs9787199 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4052.000000,956.000000, 0.809105,0.190895, maf-5-some-pop,maf-5-all-pops 627 chr1 5594736 5594737 rs2153900 0 + A A A/G genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 806.000000,4202.000000, 0.160942,0.839058, maf-5-some-pop 627 chr1 5596137 5596138 rs9439610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 801.000000,4207.000000, 0.159944,0.840056, maf-5-some-pop,maf-5-all-pops 627 chr1 5596695 5596696 rs11260640 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop 627 chr1 5597229 5597230 rs1009976 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4438.000000,570.000000, 0.886182,0.113818, maf-5-some-pop 627 chr1 5597754 5597755 rs1418630 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop,genotype-conflict 627 chr1 5601058 5601059 rs11799600 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 627 chr1 5601947 5601948 rs1578717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop 627 chr1 5603849 5603850 rs7515958 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5604015 5604016 rs1935759 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2104.000000,2904.000000, 0.420128,0.579872, maf-5-some-pop,maf-5-all-pops 627 chr1 5611256 5611257 rs11801138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop 627 chr1 5611728 5611729 rs2211417 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 512.000000,4496.000000,4496.000000,512.000000, 0.051118,0.448882,0.448882,0.051118, maf-5-some-pop 627 chr1 5612955 5612956 rs1418632 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3045.000000,1963.000000, 0.608027,0.391973, maf-5-some-pop,maf-5-all-pops 627 chr1 5614730 5614731 rs12062988 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 627 chr1 5615930 5615931 rs17028213 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4977.000000,31.000000, 0.993810,0.006190, 627 chr1 5618539 5618540 rs12069164 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop,genotype-conflict 627 chr1 5623619 5623620 rs17028235 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,genotype-conflict 627 chr1 5625565 5625566 rs6673119 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 627 chr1 5625928 5625929 rs7523214 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 627 chr1 5626093 5626094 rs9439614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3771.000000,1237.000000, 0.752995,0.247005, maf-5-some-pop,maf-5-all-pops 627 chr1 5627911 5627912 rs4845835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2017.000000,2991.000000, 0.402756,0.597244, maf-5-some-pop,maf-5-all-pops 627 chr1 5628913 5628914 rs10127971 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop 627 chr1 5631544 5631545 rs4845837 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2927.000000,2081.000000, 0.584465,0.415535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 627 chr1 5634720 5634721 rs17027022 0 + A A A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 627 chr1 5634850 5634851 rs10796403 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2109.000000,2899.000000, 0.421126,0.578874, maf-5-some-pop,maf-5-all-pops 627 chr1 5635289 5635290 rs11260648 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 627 chr1 5635315 5635316 rs7522344 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2909.000000,2099.000000, 0.580871,0.419129, maf-5-some-pop,maf-5-all-pops 627 chr1 5635385 5635386 rs11260649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop 628 chr1 5636340 5636341 rs937486 0 - G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 40.000000,4968.000000,4968.000000,40.000000, 0.003994,0.496006,0.496006,0.003994, maf-5-some-pop,genotype-conflict 628 chr1 5636357 5636358 rs12072467 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 628 chr1 5636731 5636732 rs1775403 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3250.000000,1758.000000, 0.648962,0.351038, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5636817 5636818 rs1775404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1811.000000,3197.000000, 0.361621,0.638379, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5636829 5636830 rs1775405 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 628 chr1 5637078 5637079 rs2226156 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 628 chr1 5637197 5637198 rs17027039 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop 628 chr1 5638672 5638673 rs12080410 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3618.000000,1390.000000, 0.722444,0.277556, maf-5-some-pop,maf-5-all-pops 628 chr1 5641581 5641582 rs1775421 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 376.000000,4632.000000,4632.000000,376.000000, 0.037540,0.462460,0.462460,0.037540, maf-5-some-pop,genotype-conflict 628 chr1 5641918 5641919 rs1775420 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4603.000000,405.000000,405.000000,4603.000000, 0.459565,0.040435,0.040435,0.459565, maf-5-some-pop 628 chr1 5642510 5642511 rs1818038 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 628 chr1 5643157 5643158 rs12078796 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop 628 chr1 5643757 5643758 rs1695645 0 + C C C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1499.000000,3509.000000, 0.299321,0.700679, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5645428 5645429 rs4845803 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2799.000000,2209.000000, 0.558906,0.441094, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5645442 5645443 rs4845804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1986.000000,3022.000000, 0.396565,0.603435, maf-5-some-pop,maf-5-all-pops 628 chr1 5645711 5645712 rs4845805 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2340.000000,2668.000000, 0.467252,0.532748, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5645775 5645776 rs1499404 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,C, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,genotype-conflict 628 chr1 5646001 5646002 rs10907200 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2667.000000,2341.000000, 0.532548,0.467452, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5646201 5646202 rs12036552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2072.000000,2936.000000, 0.413738,0.586262, maf-5-some-pop,maf-5-all-pops 628 chr1 5646263 5646264 rs1775416 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2327.000000,2681.000000,2681.000000,2327.000000, 0.232328,0.267672,0.267672,0.232328, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5646356 5646357 rs12407564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4276.000000,732.000000, 0.853834,0.146166, maf-5-some-pop,genotype-conflict 628 chr1 5646983 5646984 rs7538946 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2961.000000,2047.000000, 0.591254,0.408746, maf-5-some-pop,maf-5-all-pops 628 chr1 5649622 5649623 rs12087709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 628 chr1 5658266 5658267 rs10907201 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 628 chr1 5658760 5658761 rs12090011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 628 chr1 5659651 5659652 rs11811237 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 628 chr1 5670465 5670466 rs709187 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 628 chr1 5670626 5670627 rs12116874 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 577.000000,4431.000000, 0.115216,0.884784, maf-5-some-pop 628 chr1 5671492 5671493 rs11260661 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 628 chr1 5671756 5671757 rs707583 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,genotype-conflict 628 chr1 5674433 5674434 rs770718 0 + T T C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop 628 chr1 5676652 5676653 rs17459914 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 572.000000,4436.000000, 0.114217,0.885783, maf-5-some-pop 628 chr1 5677111 5677112 rs35152314 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP, 2 A,C, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 628 chr1 5679440 5679441 rs9439603 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3490.000000,1518.000000, 0.696885,0.303115, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5680230 5680231 rs10157794 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,maf-5-all-pops 628 chr1 5680571 5680572 rs10157819 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4285.000000,723.000000, 0.855631,0.144369, maf-5-some-pop,maf-5-all-pops 628 chr1 5681227 5681228 rs1695621 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1088.000000,3920.000000, 0.217252,0.782748, maf-5-some-pop 628 chr1 5683506 5683507 rs12143743 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop,genotype-conflict 628 chr1 5683696 5683697 rs17426290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 628 chr1 5683760 5683761 rs945323 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3709.000000,1299.000000,1299.000000,3709.000000, 0.370308,0.129692,0.129692,0.370308, maf-5-some-pop 628 chr1 5684439 5684440 rs945321 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1085.000000,3923.000000,3923.000000,1085.000000, 0.108327,0.391673,0.391673,0.108327, maf-5-some-pop 628 chr1 5684737 5684738 rs1695624 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5684787 5684788 rs12145625 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops 628 chr1 5686018 5686019 rs9439607 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 515.000000,4493.000000, 0.102835,0.897165, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5686131 5686132 rs1775401 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop 628 chr1 5689609 5689610 rs770682 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1862.000000,3146.000000,3146.000000,1862.000000, 0.185903,0.314097,0.314097,0.185903, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5689920 5689921 rs17028416 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 628 chr1 5690135 5690136 rs6663290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3835.000000,1173.000000, 0.765775,0.234225, maf-5-some-pop 628 chr1 5692155 5692156 rs4845808 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4155.000000,853.000000, 0.829673,0.170327, maf-5-some-pop,maf-5-all-pops 628 chr1 5699474 5699475 rs10492947 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 874.000000,4134.000000, 0.174521,0.825479, maf-5-some-pop,maf-5-all-pops 628 chr1 5699633 5699634 rs11260666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 745.000000,4263.000000, 0.148762,0.851238, maf-5-some-pop 628 chr1 5700006 5700007 rs10465907 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop,maf-5-all-pops 628 chr1 5706437 5706438 rs12078062 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2023.000000,2985.000000, 0.403954,0.596046, maf-5-some-pop,maf-5-all-pops 628 chr1 5706559 5706560 rs17467353 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 628 chr1 5706596 5706597 rs17427125 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 628 chr1 5707161 5707162 rs971814 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2806.000000,2202.000000,2202.000000,2806.000000, 0.280152,0.219848,0.219848,0.280152, maf-5-some-pop,maf-5-all-pops 628 chr1 5707223 5707224 rs1499396 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4929.000000,79.000000,79.000000,4929.000000, 0.492113,0.007887,0.007887,0.492113, maf-5-some-pop 628 chr1 5707462 5707463 rs6675989 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 628 chr1 5707498 5707499 rs12036857 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3970.000000,1038.000000, 0.792732,0.207268, maf-5-some-pop 628 chr1 5707514 5707515 rs6690488 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 628 chr1 5707937 5707938 rs1499395 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2817.000000,2191.000000,2191.000000,2817.000000, 0.281250,0.218750,0.218750,0.281250, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5710442 5710443 rs707586 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 628 chr1 5717137 5717138 rs1775408 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP, 2 A,G, 3153.000000,1855.000000, 0.629593,0.370407, maf-5-some-pop,maf-5-all-pops 628 chr1 5717551 5717552 rs1763319 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2002.000000,3006.000000, 0.399760,0.600240, maf-5-some-pop,maf-5-all-pops 628 chr1 5718015 5718016 rs1695629 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3032.000000,1976.000000,1976.000000,3032.000000, 0.302716,0.197284,0.197284,0.302716, maf-5-some-pop,maf-5-all-pops 628 chr1 5718366 5718367 rs17028547 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,genotype-conflict 628 chr1 5718413 5718414 rs1763322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SNP500CANCER,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1870.000000,3138.000000, 0.373403,0.626597, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5718573 5718574 rs1695628 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1887.000000,3121.000000,3121.000000,1887.000000, 0.188399,0.311601,0.311601,0.188399, maf-5-some-pop,maf-5-all-pops 628 chr1 5720153 5720154 rs7554423 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 628 chr1 5723375 5723376 rs973978 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1547.000000,3461.000000,3461.000000,1547.000000, 0.154453,0.345547,0.345547,0.154453, maf-5-some-pop 628 chr1 5723562 5723563 rs12038069 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 628 chr1 5723642 5723643 rs12038771 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 628 chr1 5724659 5724660 rs17028587 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,genotype-conflict 628 chr1 5724939 5724940 rs707580 0 - T T A/G genomic single unknown 0 0 unknown exact 1 DuplicateObserved,InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2676.000000,2332.000000,2332.000000,2676.000000, 0.267173,0.232827,0.232827,0.267173, maf-5-some-pop,maf-5-all-pops 628 chr1 5731557 5731558 rs17427900 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,KRIBB_YJKIM,PERLEGEN, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 628 chr1 5732426 5732427 rs7544423 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,WI_SSAHASNP, 2 A,G, 4512.000000,496.000000, 0.900958,0.099041, maf-5-some-pop 628 chr1 5734012 5734013 rs1081454 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,KWOK,PJP,SC_JCM, 4 A,C,G,T, 3625.000000,1383.000000,1383.000000,3625.000000, 0.361921,0.138079,0.138079,0.361921, maf-5-some-pop,maf-5-all-pops 628 chr1 5736681 5736682 rs707593 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3132.000000,1876.000000,1876.000000,3132.000000, 0.312700,0.187300,0.187300,0.312700, maf-5-some-pop,genotype-conflict 628 chr1 5738499 5738500 rs10492948 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,genotype-conflict 628 chr1 5739588 5739589 rs12096787 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop 628 chr1 5739637 5739638 rs811284 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2292.000000,2716.000000, 0.457668,0.542332, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5743508 5743509 rs770701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 628 chr1 5744962 5744963 rs10492949 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4311.000000,697.000000, 0.860823,0.139177, maf-5-some-pop 628 chr1 5747183 5747184 rs770705 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 628 chr1 5747372 5747373 rs770706 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1910.000000,3098.000000,3098.000000,1910.000000, 0.190695,0.309305,0.309305,0.190695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5747487 5747488 rs770707 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2896.000000,2112.000000,2112.000000,2896.000000, 0.289137,0.210863,0.210863,0.289137, maf-5-some-pop,maf-5-all-pops 628 chr1 5748610 5748611 rs1278832 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop,maf-5-all-pops 628 chr1 5748791 5748792 rs709189 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3044.000000,1964.000000, 0.607827,0.392173, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5749082 5749083 rs709188 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1913.000000,3095.000000, 0.381989,0.618011, maf-5-some-pop,maf-5-all-pops 628 chr1 5750012 5750013 rs2649069 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3133.000000,1875.000000, 0.625599,0.374401, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5750581 5750582 rs770710 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,genotype-conflict 628 chr1 5751019 5751020 rs770711 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1689.000000,3319.000000,3319.000000,1689.000000, 0.168630,0.331370,0.331370,0.168630, maf-5-some-pop 628 chr1 5752339 5752340 rs811285 0 - C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 628 chr1 5759490 5759491 rs41321444 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 206.000000,4802.000000,4802.000000,206.000000, 0.020567,0.479433,0.479433,0.020567, maf-5-some-pop 628 chr1 5764878 5764879 rs796396 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops,genotype-conflict 628 chr1 5765352 5765353 rs770693 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3415.000000,1593.000000,1593.000000,3415.000000, 0.340954,0.159046,0.159046,0.340954, maf-5-some-pop,genotype-conflict 628 chr1 5766278 5766279 rs17028692 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 629 chr1 5767804 5767805 rs2649078 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 629 chr1 5770264 5770265 rs873982 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2745.000000,2263.000000,2263.000000,2745.000000, 0.274062,0.225938,0.225938,0.274062, maf-5-some-pop,maf-5-all-pops,genotype-conflict 629 chr1 5772990 5772991 rs770698 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop,maf-5-all-pops 629 chr1 5773941 5773942 rs12072588 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop 629 chr1 5774673 5774674 rs1414379 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3157.000000,1851.000000, 0.630391,0.369609, maf-5-some-pop,maf-5-all-pops,genotype-conflict 629 chr1 5774875 5774876 rs1414380 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1882.000000,3126.000000, 0.375799,0.624201, maf-5-some-pop,maf-5-all-pops 629 chr1 5778235 5778236 rs2649092 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1597.000000,3411.000000,3411.000000,1597.000000, 0.159445,0.340555,0.340555,0.159445, maf-5-some-pop,maf-5-all-pops 629 chr1 5778788 5778789 rs9725810 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 629 chr1 5782720 5782721 rs10907212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1179.000000,3829.000000, 0.235423,0.764577, maf-5-some-pop,genotype-conflict 629 chr1 5782768 5782769 rs2649086 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1622.000000,3386.000000,3386.000000,1622.000000, 0.161941,0.338059,0.338059,0.161941, maf-5-some-pop,maf-5-all-pops 629 chr1 5785134 5785135 rs1875037 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1644.000000,3364.000000,3364.000000,1644.000000, 0.164137,0.335863,0.335863,0.164137, maf-5-some-pop,maf-5-all-pops 629 chr1 5790497 5790498 rs2842258 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3767.000000,1241.000000,1241.000000,3767.000000, 0.376098,0.123902,0.123902,0.376098, maf-5-some-pop 629 chr1 5790654 5790655 rs2842257 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2804.000000,2204.000000,2204.000000,2804.000000, 0.279952,0.220048,0.220048,0.279952, maf-5-some-pop 629 chr1 5792552 5792553 rs12734259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 629 chr1 5803619 5803620 rs2842244 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2708.000000,2300.000000,2300.000000,2708.000000, 0.270367,0.229633,0.229633,0.270367, maf-5-some-pop,maf-5-all-pops 629 chr1 5805604 5805605 rs11260682 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 718.000000,4290.000000, 0.143371,0.856629, maf-5-some-pop 629 chr1 5806348 5806349 rs924378 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,genotype-conflict 629 chr1 5811542 5811543 rs17028725 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop 629 chr1 5813297 5813298 rs17028728 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,genotype-conflict 629 chr1 5813723 5813724 rs12061902 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1002.000000,4006.000000, 0.200080,0.799920, maf-5-some-pop 629 chr1 5813883 5813884 rs12095646 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 817.000000,4191.000000, 0.163139,0.836861, maf-5-some-pop,genotype-conflict 629 chr1 5814134 5814135 rs17429690 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 629 chr1 5814153 5814154 rs12060804 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop,genotype-conflict 629 chr1 5814897 5814898 rs11260689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop 629 chr1 5815247 5815248 rs12060268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop,genotype-conflict 629 chr1 5817184 5817185 rs12059056 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 629 chr1 5817264 5817265 rs17028749 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop,genotype-conflict 629 chr1 5817473 5817474 rs17028753 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 629 chr1 5819553 5819554 rs12062185 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 629 chr1 5830247 5830248 rs4072521 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2992.000000,2016.000000, 0.597444,0.402556, maf-5-some-pop,maf-5-all-pops 629 chr1 5830814 5830815 rs4412595 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2048.000000,2960.000000, 0.408946,0.591054, maf-5-some-pop,maf-5-all-pops 629 chr1 5830966 5830967 rs3935073 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3158.000000,1850.000000,1850.000000,3158.000000, 0.315296,0.184704,0.184704,0.315296, maf-5-some-pop,maf-5-all-pops,genotype-conflict 629 chr1 5831117 5831118 rs4276922 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 629 chr1 5835064 5835065 rs11804517 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 629 chr1 5861104 5861105 rs4845818 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1211.000000,3797.000000, 0.241813,0.758187, maf-5-some-pop 629 chr1 5879131 5879132 rs9661613 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4056.000000,952.000000, 0.809904,0.190096, maf-5-some-pop 629 chr1 5879771 5879772 rs9725925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,genotype-conflict 629 chr1 5880465 5880466 rs9308476 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop 629 chr1 5880908 5880909 rs4845820 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2030.000000,2978.000000, 0.405351,0.594649, maf-5-some-pop 629 chr1 5897006 5897007 rs4623725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop,maf-5-all-pops 630 chr1 5898322 5898323 rs11121170 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2020.000000,2988.000000, 0.403355,0.596645, maf-5-some-pop,maf-5-all-pops 630 chr1 5898728 5898729 rs2485655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 955.000000,4053.000000, 0.190695,0.809305, maf-5-some-pop 630 chr1 5901287 5901288 rs1698973 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 767.000000,4241.000000,4241.000000,767.000000, 0.076577,0.423423,0.423423,0.076577, maf-5-some-pop 630 chr1 5902049 5902050 rs4845824 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3316.000000,1692.000000, 0.662141,0.337859, maf-5-some-pop,maf-5-all-pops 630 chr1 5902085 5902086 rs11579676 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3978.000000,1030.000000, 0.794329,0.205671, maf-5-some-pop,maf-5-all-pops 630 chr1 5902313 5902314 rs11590626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop 630 chr1 5902426 5902427 rs9729215 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop 630 chr1 5902760 5902761 rs489834 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop,genotype-conflict 630 chr1 5902849 5902850 rs17028814 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,genotype-conflict 630 chr1 5903957 5903958 rs1698980 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 816.000000,4192.000000,4192.000000,816.000000, 0.081470,0.418530,0.418530,0.081470, maf-5-some-pop 630 chr1 5904717 5904718 rs1624858 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,maf-5-all-pops 630 chr1 5904743 5904744 rs4845825 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 630 chr1 5905928 5905929 rs1765719 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3583.000000,1425.000000,1425.000000,3583.000000, 0.357728,0.142272,0.142272,0.357728, maf-5-some-pop,maf-5-all-pops 630 chr1 5906336 5906337 rs506776 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop 630 chr1 5906417 5906418 rs472189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop 630 chr1 5908732 5908733 rs1287616 0 + C C C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1772.000000,3236.000000, 0.353834,0.646166, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5909638 5909639 rs17471243 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop 630 chr1 5910573 5910574 rs1287617 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop 630 chr1 5913620 5913621 rs548726 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop,maf-5-all-pops,microattr-tpa 630 chr1 5913892 5913893 rs522049 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 630 chr1 5916457 5916458 rs12095710 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 630 chr1 5919524 5919525 rs12122008 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 630 chr1 5921041 5921042 rs11121600 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5921555 5921556 rs12121542 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,C, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 630 chr1 5921584 5921585 rs11121605 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop,genotype-conflict 630 chr1 5922077 5922078 rs11121608 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5922833 5922834 rs12133533 0 + C C A/C genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,C, 484.000000,4524.000000, 0.096645,0.903355, maf-5-some-pop 630 chr1 5923787 5923788 rs11121648 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2517.000000,2491.000000, 0.502596,0.497404, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5925800 5925801 rs489933 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1952.000000,3056.000000,3056.000000,1952.000000, 0.194888,0.305112,0.305112,0.194888, maf-5-some-pop,maf-5-all-pops 630 chr1 5925954 5925955 rs12737596 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF, 2 C,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop 630 chr1 5934235 5934236 rs868162 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1409.000000,3599.000000,3599.000000,1409.000000, 0.140675,0.359325,0.359325,0.140675, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5934489 5934490 rs868163 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2157.000000,2851.000000,2851.000000,2157.000000, 0.215355,0.284645,0.284645,0.215355, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5934499 5934500 rs905467 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 3650.000000,1358.000000,1358.000000,3650.000000, 0.364417,0.135583,0.135583,0.364417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5942746 5942747 rs12079601 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1904.000000,3104.000000, 0.380192,0.619808, maf-5-some-pop,maf-5-all-pops 630 chr1 5944137 5944138 rs4908559 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 828.000000,4180.000000, 0.165335,0.834665, maf-5-some-pop,genotype-conflict 630 chr1 5946442 5946443 rs12735231 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop,maf-5-all-pops 630 chr1 5946949 5946950 rs10746504 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4195.000000,813.000000, 0.837660,0.162340, maf-5-some-pop,genotype-conflict 630 chr1 5948676 5948677 rs2282281 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 4176.000000,832.000000,832.000000,4176.000000, 0.416933,0.083067,0.083067,0.416933, maf-5-some-pop 630 chr1 5949017 5949018 rs11122098 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 431.000000,4577.000000, 0.086062,0.913938, maf-5-some-pop,genotype-conflict 630 chr1 5957341 5957342 rs12139627 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,genotype-conflict 630 chr1 5957588 5957589 rs7519953 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop,maf-5-all-pops 630 chr1 5957724 5957725 rs12728066 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop 630 chr1 5960502 5960503 rs2312464 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2373.000000,2635.000000,2635.000000,2373.000000, 0.236921,0.263079,0.263079,0.236921, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5961651 5961652 rs11122116 0 + G G A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSIP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 630 chr1 5961680 5961681 rs11122117 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,genotype-conflict 630 chr1 5961869 5961870 rs2134551 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4147.000000,861.000000,861.000000,4147.000000, 0.414038,0.085962,0.085962,0.414038, maf-5-some-pop 630 chr1 5965380 5965381 rs12120967 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 20 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop 630 chr1 5965823 5965824 rs12093500 0 + G G C/G genomic single unknown 0 0 ncRNA,missense exact 1 14 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,genotype-conflict 630 chr1 5966118 5966119 rs3747987 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 833.000000,4175.000000,4175.000000,833.000000, 0.083167,0.416833,0.416833,0.083167, maf-5-some-pop 630 chr1 5966660 5966661 rs11122130 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 630 chr1 5967063 5967064 rs9628990 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop 630 chr1 5967749 5967750 rs12123214 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop,genotype-conflict 630 chr1 5968048 5968049 rs17028879 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop,genotype-conflict 630 chr1 5971454 5971455 rs6694744 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop,genotype-conflict 630 chr1 5985071 5985072 rs1011994 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4301.000000,707.000000, 0.858826,0.141174, maf-5-some-pop,maf-5-all-pops 630 chr1 5986408 5986409 rs12142363 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop 630 chr1 5988925 5988926 rs11590436 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop,maf-5-all-pops,genotype-conflict 630 chr1 5989928 5989929 rs11120805 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 630 chr1 5989980 5989981 rs12121044 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4580.000000,428.000000, 0.914537,0.085463, maf-5-some-pop 630 chr1 5993858 5993859 rs11576617 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops 630 chr1 5995088 5995089 rs12098207 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 630 chr1 6002072 6002073 rs12033563 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 630 chr1 6002954 6002955 rs11120849 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 630 chr1 6006571 6006572 rs10492950 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,genotype-conflict 630 chr1 6009295 6009296 rs10864284 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1030.000000,3978.000000, 0.205671,0.794329, maf-5-some-pop,maf-5-all-pops 630 chr1 6011128 6011129 rs6702707 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 883.000000,4125.000000, 0.176318,0.823682, maf-5-some-pop,maf-5-all-pops 630 chr1 6011600 6011601 rs6659420 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop,maf-5-all-pops 631 chr1 6029936 6029937 rs12745395 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop,maf-5-all-pops 631 chr1 6031943 6031944 rs11588889 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3149.000000,1859.000000, 0.628794,0.371206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6033972 6033973 rs4908458 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop 631 chr1 6034199 6034200 rs4068399 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3355.000000,1653.000000,1653.000000,3355.000000, 0.334964,0.165036,0.165036,0.334964, maf-5-some-pop,maf-5-all-pops 631 chr1 6037602 6037603 rs11120934 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, maf-5-some-pop,maf-5-all-pops 631 chr1 6038582 6038583 rs4908639 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop,genotype-conflict 631 chr1 6041367 6041368 rs2312049 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4442.000000,566.000000,566.000000,4442.000000, 0.443490,0.056510,0.056510,0.443490, maf-5-some-pop 631 chr1 6045021 6045022 rs812051 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 631 chr1 6049057 6049058 rs709207 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4054.000000,954.000000, 0.809505,0.190495, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6056167 6056168 rs1295101 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 2996.000000,2012.000000,2012.000000,2996.000000, 0.299121,0.200879,0.200879,0.299121, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6056728 6056729 rs7524578 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,genotype-conflict 631 chr1 6059228 6059229 rs1295100 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2799.000000,2209.000000,2209.000000,2799.000000, 0.279453,0.220547,0.220547,0.279453, maf-5-some-pop,maf-5-all-pops 631 chr1 6059321 6059322 rs7524865 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 631 chr1 6061647 6061648 rs481762 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2340.000000,2668.000000,2668.000000,2340.000000, 0.233626,0.266374,0.266374,0.233626, maf-5-some-pop,maf-5-all-pops 631 chr1 6067639 6067640 rs806114 0 - C C C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6079391 6079392 rs1295107 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2128.000000,2880.000000,2880.000000,2128.000000, 0.212460,0.287540,0.287540,0.212460, maf-5-some-pop,maf-5-all-pops 631 chr1 6079629 6079630 rs7539366 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2213.000000,2795.000000, 0.441893,0.558107, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6087846 6087847 rs17029061 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 631 chr1 6088008 6088009 rs10864321 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2204.000000,2804.000000, 0.440096,0.559904, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6088363 6088364 rs11121065 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6088670 6088671 rs1295103 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 368.000000,4640.000000,4640.000000,368.000000, 0.036741,0.463259,0.463259,0.036741, maf-5-some-pop,genotype-conflict 631 chr1 6089880 6089881 rs1295102 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KWOK,SC_SNP,TISHKOFF, 4 A,C,G,T, 246.000000,4762.000000,4762.000000,246.000000, 0.024561,0.475439,0.475439,0.024561, maf-5-some-pop,maf-5-all-pops 631 chr1 6100854 6100855 rs4908494 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 631 chr1 6101106 6101107 rs4908495 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 631 chr1 6102418 6102419 rs4908728 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop,genotype-conflict 631 chr1 6104001 6104002 rs3789563 0 - T T A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2019.000000,2989.000000,2989.000000,2019.000000, 0.201577,0.298423,0.298423,0.201577, maf-5-some-pop,maf-5-all-pops 631 chr1 6105108 6105109 rs3789559 0 - C C A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 743.000000,4265.000000,4265.000000,743.000000, 0.074181,0.425819,0.425819,0.074181, maf-5-some-pop 631 chr1 6110788 6110789 rs2010057 0 - A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 631 chr1 6112652 6112653 rs12047044 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 3104.000000,1904.000000, 0.619808,0.380192, maf-5-some-pop,maf-5-all-pops,genotype-conflict 631 chr1 6117170 6117171 rs3789553 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3069.000000,1939.000000,1939.000000,3069.000000, 0.306410,0.193590,0.193590,0.306410, maf-5-some-pop,maf-5-all-pops 631 chr1 6125083 6125084 rs4908752 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3349.000000,1659.000000, 0.668730,0.331270, maf-5-some-pop,maf-5-all-pops 631 chr1 6125981 6125982 rs17029103 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 631 chr1 6128228 6128229 rs4908757 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3619.000000,1389.000000, 0.722644,0.277356, maf-5-some-pop,maf-5-all-pops 631 chr1 6129863 6129864 rs1883771 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4442.000000,566.000000,566.000000,4442.000000, 0.443490,0.056510,0.056510,0.443490, maf-5-some-pop,genotype-conflict 631 chr1 6137402 6137403 rs3789543 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1851.000000,3157.000000,3157.000000,1851.000000, 0.184804,0.315196,0.315196,0.184804, maf-5-some-pop,maf-5-all-pops 631 chr1 6139743 6139744 rs2871871 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BUSHMAN,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 413.000000,4595.000000,4595.000000,413.000000, 0.041234,0.458766,0.458766,0.041234, maf-5-some-pop 631 chr1 6140139 6140140 rs11121187 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop 631 chr1 6141260 6141261 rs6701690 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 631 chr1 6141324 6141325 rs3789541 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 625.000000,4383.000000,4383.000000,625.000000, 0.062400,0.437600,0.437600,0.062400, maf-5-some-pop 631 chr1 6144913 6144914 rs3789531 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2326.000000,2682.000000,2682.000000,2326.000000, 0.232228,0.267772,0.267772,0.232228, maf-5-some-pop,maf-5-all-pops 631 chr1 6144964 6144965 rs7554078 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 631 chr1 6153405 6153406 rs3789530 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 485.000000,4523.000000,4523.000000,485.000000, 0.048423,0.451577,0.451577,0.048423, maf-5-some-pop 631 chr1 6153524 6153525 rs3789529 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2544.000000,2464.000000,2464.000000,2544.000000, 0.253994,0.246006,0.246006,0.253994, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6163064 6163065 rs12037962 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop 632 chr1 6163924 6163925 rs3810989 0 - C C A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3513.000000,1495.000000,1495.000000,3513.000000, 0.350739,0.149261,0.149261,0.350739, maf-5-some-pop,maf-5-all-pops 632 chr1 6177201 6177202 rs7531562 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop,maf-5-all-pops 632 chr1 6186563 6186564 rs2273036 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,GMI,KRIBB_YJKIM,SSMP,YUSUKE, 4 A,C,G,T, 172.000000,4836.000000,4836.000000,172.000000, 0.017173,0.482827,0.482827,0.017173, maf-5-some-pop 632 chr1 6191130 6191131 rs17029186 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop 632 chr1 6192864 6192865 rs11121295 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop,maf-5-all-pops 632 chr1 6195731 6195732 rs9435080 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2453.000000,2555.000000, 0.489816,0.510184, maf-5-some-pop,maf-5-all-pops 632 chr1 6198744 6198745 rs2785585 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1587.000000,3421.000000, 0.316893,0.683107, maf-5-some-pop,maf-5-all-pops 632 chr1 6199676 6199677 rs2485024 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 632 chr1 6204221 6204222 rs17489787 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4172.000000,836.000000, 0.833067,0.166933, maf-5-some-pop,maf-5-all-pops 632 chr1 6205986 6205987 rs12734251 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop,maf-5-all-pops 632 chr1 6207216 6207217 rs1883606 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2315.000000,2693.000000,2693.000000,2315.000000, 0.231130,0.268870,0.268870,0.231130, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6211963 6211964 rs10864393 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2563.000000,2445.000000, 0.511781,0.488219, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6217858 6217859 rs9434741 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6222500 6222501 rs731975 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3491.000000,1517.000000,1517.000000,3491.000000, 0.348542,0.151458,0.151458,0.348542, maf-5-some-pop,maf-5-all-pops 632 chr1 6222882 6222883 rs4908529 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3803.000000,1205.000000, 0.759385,0.240615, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6243334 6243335 rs7542655 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,RSG_JCVI,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4412.000000,596.000000, 0.880990,0.119010, maf-5-some-pop 632 chr1 6259129 6259130 rs3827723 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3404.000000,1604.000000,1604.000000,3404.000000, 0.339856,0.160144,0.160144,0.339856, maf-5-some-pop,maf-5-all-pops 632 chr1 6261870 6261871 rs10864433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1388.000000,3620.000000, 0.277157,0.722843, maf-5-some-pop,maf-5-all-pops 632 chr1 6272812 6272813 rs2294711 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 653.000000,4355.000000,4355.000000,653.000000, 0.065196,0.434804,0.434804,0.065196, maf-5-some-pop 632 chr1 6276166 6276167 rs12071731 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop 632 chr1 6278413 6278414 rs709209 0 + A A A/G genomic single unknown 0 0 missense exact 1 33 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2819.000000,2189.000000, 0.562899,0.437101, maf-5-some-pop,maf-5-all-pops,genotype-conflict 632 chr1 6281089 6281090 rs6689940 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 632 chr1 6281376 6281377 rs1064721 0 - C C A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,EVA-GONL,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 453.000000,4555.000000,4555.000000,453.000000, 0.045228,0.454772,0.454772,0.045228, maf-5-some-pop 632 chr1 6281666 6281667 rs14281 0 - A A G/T genomic single unknown 0 0 intron,untranslated-3 exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM_SSAHASNP,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3999.000000,1009.000000,1009.000000,3999.000000, 0.399261,0.100739,0.100739,0.399261, maf-5-some-pop,maf-5-all-pops 633 chr1 6291809 6291810 rs4908541 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 633 chr1 6314821 6314822 rs11590458 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3663.000000,1345.000000, 0.731430,0.268570, maf-5-some-pop,maf-5-all-pops 633 chr1 6316883 6316884 rs2057006 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 633 chr1 6317120 6317121 rs11811690 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop 633 chr1 6332668 6332669 rs846103 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 41.000000,4967.000000,4967.000000,41.000000, 0.004093,0.495907,0.495907,0.004093, maf-5-some-pop 633 chr1 6343824 6343825 rs10489535 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 633 chr1 6344152 6344153 rs6682058 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 705.000000,4303.000000, 0.140775,0.859225, maf-5-some-pop,genotype-conflict 633 chr1 6345817 6345818 rs12404358 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 633 chr1 6355064 6355065 rs35553413 0 + G G C/G genomic single unknown 0 0 intron exact 1 MixedObserved 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,G, 1066.000000,3942.000000, 0.212859,0.787141, maf-5-some-pop 633 chr1 6355357 6355358 rs7554077 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop 633 chr1 6360146 6360147 rs17361670 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 633 chr1 6374486 6374487 rs12087652 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3846.000000,1162.000000, 0.767971,0.232029, maf-5-some-pop 633 chr1 6375055 6375056 rs3789492 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 633 chr1 6391312 6391313 rs3789484 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 3247.000000,1761.000000,1761.000000,3247.000000, 0.324181,0.175819,0.175819,0.324181, maf-5-some-pop,maf-5-all-pops 633 chr1 6395590 6395591 rs11801103 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 511.000000,4497.000000, 0.102037,0.897963, maf-5-some-pop 633 chr1 6399779 6399780 rs6680950 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 633 chr1 6409978 6409979 rs17029376 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop 633 chr1 6414536 6414537 rs2010905 0 - A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 633 chr1 6415246 6415247 rs9662106 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop,genotype-conflict 633 chr1 6416103 6416104 rs3789470 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4498.000000,510.000000,510.000000,4498.000000, 0.449081,0.050919,0.050919,0.449081, maf-5-some-pop,genotype-conflict 633 chr1 6416330 6416331 rs3789466 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 481.000000,4527.000000,4527.000000,481.000000, 0.048023,0.451977,0.451977,0.048023, maf-5-some-pop 633 chr1 6416377 6416378 rs6688127 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop 634 chr1 6422758 6422759 rs6660500 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 634 chr1 6454593 6454594 rs6663299 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop 634 chr1 6456471 6456472 rs7524775 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,genotype-conflict 634 chr1 6463099 6463100 rs17029399 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop,maf-5-all-pops 634 chr1 6465053 6465054 rs17026985 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop 634 chr1 6475685 6475686 rs11364 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1444.000000,3564.000000,3564.000000,1444.000000, 0.144169,0.355831,0.355831,0.144169, maf-5-some-pop,maf-5-all-pops 634 chr1 6501795 6501796 rs10864548 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1557.000000,3451.000000, 0.310903,0.689097, maf-5-some-pop,maf-5-all-pops,genotype-conflict 634 chr1 6505670 6505671 rs11121879 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop 634 chr1 6513907 6513908 rs2986737 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_JCM,SC_SNP, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop 634 chr1 6529822 6529823 rs3007420 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop,genotype-conflict 634 chr1 6530188 6530189 rs3007421 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop,microattr-tpa,genotype-conflict 634 chr1 6542329 6542330 rs1002966 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3957.000000,1051.000000,1051.000000,3957.000000, 0.395068,0.104932,0.104932,0.395068, maf-5-some-pop 634 chr1 6547669 6547670 rs2986738 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1454.000000,3554.000000, 0.290335,0.709665, maf-5-some-pop,maf-5-all-pops 634 chr1 6548055 6548056 rs2986739 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop,maf-5-all-pops 634 chr1 6552498 6552499 rs9434795 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1790.000000,3218.000000, 0.357428,0.642572, maf-5-some-pop,maf-5-all-pops,genotype-conflict 635 chr1 6567248 6567249 rs4908553 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2193.000000,2815.000000, 0.437899,0.562101, maf-5-some-pop,maf-5-all-pops 635 chr1 6568949 6568950 rs4908901 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2232.000000,2776.000000, 0.445687,0.554313, maf-5-some-pop,maf-5-all-pops,genotype-conflict 635 chr1 6569285 6569286 rs11121985 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2263.000000,2745.000000, 0.451877,0.548123, maf-5-some-pop,maf-5-all-pops 635 chr1 6572078 6572079 rs4243828 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 635 chr1 6572331 6572332 rs4509598 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 50.000000,4958.000000, 0.009984,0.990016, 635 chr1 6579459 6579460 rs1010583 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,TSC-CSHL, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 635 chr1 6580249 6580250 rs4908904 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 MixedObserved 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1324.000000,3684.000000, 0.264377,0.735623, maf-5-some-pop 635 chr1 6581282 6581283 rs12410405 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3826.000000,1182.000000, 0.763978,0.236022, maf-5-some-pop 635 chr1 6581876 6581877 rs7540913 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop 635 chr1 6585538 6585539 rs1064835 0 - C C A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3670.000000,1338.000000,1338.000000,3670.000000, 0.366414,0.133586,0.133586,0.366414, maf-5-some-pop 635 chr1 6586069 6586070 rs7548042 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 635 chr1 6590132 6590133 rs11122082 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop,maf-5-all-pops 635 chr1 6591936 6591937 rs932112 0 + T T A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 3 A,C,T, 2.000000,3903.000000,1103.000000, 0.000399,0.779353,0.220248, maf-5-some-pop,maf-5-all-pops 635 chr1 6592799 6592800 rs17029613 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 19.000000,4989.000000, 0.003794,0.996206, 635 chr1 6593531 6593532 rs11122083 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 732.000000,4276.000000, 0.146166,0.853834, maf-5-some-pop,maf-5-all-pops 635 chr1 6602945 6602946 rs2412310 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 99.000000,4909.000000,4909.000000,99.000000, 0.009884,0.490116,0.490116,0.009884, maf-5-some-pop 635 chr1 6606607 6606608 rs6679649 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4001.000000,1007.000000, 0.798922,0.201078, maf-5-some-pop,maf-5-all-pops 635 chr1 6607198 6607199 rs10746502 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3851.000000,1157.000000, 0.768970,0.231030, maf-5-some-pop,maf-5-all-pops 635 chr1 6613189 6613190 rs6577582 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,genotype-conflict 635 chr1 6615106 6615107 rs4908925 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop 635 chr1 6641757 6641758 rs11811658 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop 635 chr1 6644722 6644723 rs731024 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1440.000000,3568.000000, 0.287540,0.712460, maf-5-some-pop,genotype-conflict 635 chr1 6645866 6645867 rs6682920 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1752.000000,3256.000000, 0.349840,0.650160, maf-5-some-pop,maf-5-all-pops,genotype-conflict 635 chr1 6649276 6649277 rs17029628 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 13 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 635 chr1 6651092 6651093 rs201171 0 - G G C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,PERLEGEN,SC_JCM,SI_EXO,SSMP,TSC-CSHL,YUSUKE, 4 A,C,G,T, 736.000000,4272.000000,4272.000000,736.000000, 0.073482,0.426518,0.426518,0.073482, maf-5-some-pop 635 chr1 6651727 6651728 rs1556036 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1255.000000,3753.000000,3753.000000,1255.000000, 0.125300,0.374700,0.374700,0.125300, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 635 chr1 6657354 6657355 rs4587589 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop 635 chr1 6659871 6659872 rs6678681 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1625.000000,3383.000000, 0.324481,0.675519, maf-5-some-pop,maf-5-all-pops 636 chr1 6690139 6690140 rs742394 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1583.000000,3425.000000,3425.000000,1583.000000, 0.158047,0.341953,0.341953,0.158047, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6705355 6705356 rs200457 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop,maf-5-all-pops 636 chr1 6705943 6705944 rs12137794 0 + C C C/T genomic single unknown 0 0 missense exact 1 15 1000GENOMES,AFFY,APPLERA_GI,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 636 chr1 6709609 6709610 rs7549198 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1695.000000,3313.000000, 0.338458,0.661542, maf-5-some-pop,maf-5-all-pops 636 chr1 6713113 6713114 rs2235564 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 1626.000000,3382.000000,3382.000000,1626.000000, 0.162340,0.337660,0.337660,0.162340, maf-5-some-pop,maf-5-all-pops,microattr-tpa 636 chr1 6713281 6713282 rs200440 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2537.000000,2471.000000,2471.000000,2537.000000, 0.253295,0.246705,0.246705,0.253295, maf-5-some-pop,genotype-conflict 636 chr1 6721233 6721234 rs200451 0 - T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6724104 6724105 rs2235563 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3327.000000,1681.000000,1681.000000,3327.000000, 0.332169,0.167831,0.167831,0.332169, maf-5-some-pop,maf-5-all-pops 636 chr1 6742280 6742281 rs156985 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 810.000000,4198.000000,4198.000000,810.000000, 0.080871,0.419129,0.419129,0.080871, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6745443 6745444 rs200444 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop 636 chr1 6747896 6747897 rs277686 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6748128 6748129 rs156989 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2474.000000,2534.000000,2534.000000,2474.000000, 0.247005,0.252995,0.252995,0.247005, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6756433 6756434 rs3827729 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1567.000000,3441.000000,3441.000000,1567.000000, 0.156450,0.343550,0.343550,0.156450, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6763136 6763137 rs278017 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2457.000000,2551.000000,2551.000000,2457.000000, 0.245308,0.254692,0.254692,0.245308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6766735 6766736 rs399242 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4225.000000,783.000000,783.000000,4225.000000, 0.421825,0.078175,0.078175,0.421825, maf-5-some-pop 636 chr1 6768855 6768856 rs11122119 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6771139 6771140 rs277670 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1372.000000,3636.000000,3636.000000,1372.000000, 0.136981,0.363019,0.363019,0.136981, maf-5-some-pop,maf-5-all-pops 636 chr1 6771568 6771569 rs277671 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 740.000000,4268.000000,4268.000000,740.000000, 0.073882,0.426118,0.426118,0.073882, maf-5-some-pop,maf-5-all-pops,genotype-conflict 636 chr1 6771606 6771607 rs277672 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2412.000000,2596.000000, 0.481629,0.518371, maf-5-some-pop,maf-5-all-pops 636 chr1 6784052 6784053 rs202577 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2538.000000,2470.000000,2470.000000,2538.000000, 0.253395,0.246605,0.246605,0.253395, maf-5-some-pop,maf-5-all-pops 636 chr1 6784591 6784592 rs277681 0 - A A G/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4256.000000,752.000000,752.000000,4256.000000, 0.424920,0.075080,0.075080,0.424920, maf-5-some-pop,maf-5-all-pops 636 chr1 6793239 6793240 rs441515 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 636 chr1 6798978 6798979 rs17029815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,genotype-conflict 636 chr1 6803491 6803492 rs12724107 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 G,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 636 chr1 6803746 6803747 rs12065191 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop,maf-5-all-pops 636 chr1 6808353 6808354 rs277675 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3517.000000,1491.000000,1491.000000,3517.000000, 0.351138,0.148862,0.148862,0.351138, maf-5-some-pop,maf-5-all-pops 636 chr1 6808676 6808677 rs11122129 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4368.000000,640.000000, 0.872204,0.127796, maf-5-some-pop,genotype-conflict 636 chr1 6810787 6810788 rs454782 0 - T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 637 chr1 6816688 6816689 rs12069069 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop 637 chr1 6817342 6817343 rs17027008 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 640.000000,4368.000000, 0.127796,0.872204, maf-5-some-pop,genotype-conflict 637 chr1 6823922 6823923 rs422111 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1988.000000,3020.000000,3020.000000,1988.000000, 0.198482,0.301518,0.301518,0.198482, maf-5-some-pop,maf-5-all-pops 637 chr1 6826466 6826467 rs378930 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 A,G, 2186.000000,2822.000000, 0.436502,0.563498, maf-5-some-pop,maf-5-all-pops 637 chr1 6826570 6826571 rs406028 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3018.000000,1990.000000, 0.602636,0.397364, maf-5-some-pop,maf-5-all-pops 637 chr1 6826587 6826588 rs406619 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2053.000000,2955.000000,2955.000000,2053.000000, 0.204972,0.295028,0.295028,0.204972, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6829581 6829582 rs448886 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 4 A,C,G,T, 2051.000000,2957.000000,2957.000000,2051.000000, 0.204772,0.295228,0.295228,0.204772, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6831061 6831062 rs3861756 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 637 chr1 6834345 6834346 rs11122143 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop,maf-5-all-pops 637 chr1 6835760 6835761 rs11122144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 970.000000,4038.000000, 0.193690,0.806310, maf-5-some-pop,maf-5-all-pops 637 chr1 6843927 6843928 rs17029843 0 + A A A/C genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 637 chr1 6853354 6853355 rs1542899 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop 637 chr1 6863341 6863342 rs17029864 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1193.000000,3815.000000, 0.238219,0.761781, maf-5-some-pop,maf-5-all-pops 637 chr1 6867841 6867842 rs12735232 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 965.000000,4043.000000, 0.192692,0.807308, maf-5-some-pop,maf-5-all-pops 637 chr1 6886648 6886649 rs811400 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2933.000000,2075.000000, 0.585663,0.414337, maf-5-some-pop,maf-5-all-pops 637 chr1 6896284 6896285 rs1396904 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3590.000000,1418.000000,1418.000000,3590.000000, 0.358427,0.141573,0.141573,0.358427, maf-5-some-pop,maf-5-all-pops 637 chr1 6898514 6898515 rs11578279 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 G,T, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop 637 chr1 6899862 6899863 rs12023462 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 637 chr1 6901017 6901018 rs4908425 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 810.000000,4198.000000, 0.161741,0.838259, maf-5-some-pop 637 chr1 6904878 6904879 rs4908570 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1958.000000,3050.000000, 0.390974,0.609026, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6921577 6921578 rs17441830 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop,genotype-conflict 637 chr1 6922491 6922492 rs11120779 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 637 chr1 6923725 6923726 rs1972306 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3103.000000,1905.000000,1905.000000,3103.000000, 0.309804,0.190196,0.190196,0.309804, maf-5-some-pop 637 chr1 6924586 6924587 rs12406288 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 431.000000,4577.000000, 0.086062,0.913938, maf-5-some-pop 637 chr1 6927025 6927026 rs17029963 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop,genotype-conflict 637 chr1 6927522 6927523 rs6657847 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, maf-5-some-pop,maf-5-all-pops 637 chr1 6927751 6927752 rs11120780 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1938.000000,3070.000000, 0.386981,0.613019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6937770 6937771 rs10492951 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4580.000000,428.000000, 0.914537,0.085463, maf-5-some-pop,genotype-conflict 637 chr1 6938688 6938689 rs17029988 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,genotype-conflict 637 chr1 6939527 6939528 rs6655933 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1082.000000,3926.000000, 0.216054,0.783946, maf-5-some-pop,maf-5-all-pops 637 chr1 6944803 6944804 rs950493 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3926.000000,1082.000000,1082.000000,3926.000000, 0.391973,0.108027,0.108027,0.391973, maf-5-some-pop,maf-5-all-pops,genotype-conflict 637 chr1 6945529 6945530 rs10399866 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1062.000000,3946.000000, 0.212061,0.787939, maf-5-some-pop,maf-5-all-pops 638 chr1 6952325 6952326 rs12727063 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1078.000000,3930.000000, 0.215256,0.784744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 6955332 6955333 rs17030041 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop,genotype-conflict 638 chr1 6960926 6960927 rs4908426 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop 638 chr1 6967558 6967559 rs12132296 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 627.000000,4381.000000, 0.125200,0.874800, maf-5-some-pop 638 chr1 6968411 6968412 rs6577393 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 638 chr1 6972307 6972308 rs17495634 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 638 chr1 6976225 6976226 rs4908427 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,genotype-conflict 638 chr1 6976367 6976368 rs4908428 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 304.000000,4704.000000, 0.060703,0.939297, maf-5-some-pop 638 chr1 6977004 6977005 rs1892262 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2118.000000,2890.000000,2890.000000,2118.000000, 0.211462,0.288538,0.288538,0.211462, maf-5-some-pop 638 chr1 6987340 6987341 rs2898917 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 4 A,C,G,T, 353.000000,4655.000000,4655.000000,353.000000, 0.035244,0.464756,0.464756,0.035244, maf-5-some-pop 638 chr1 6987404 6987405 rs2412219 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1927.000000,3081.000000,3081.000000,1927.000000, 0.192392,0.307608,0.307608,0.192392, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 6990490 6990491 rs41447147 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 4 A,C,G,T, 4857.000000,151.000000,151.000000,4857.000000, 0.484924,0.015076,0.015076,0.484924, maf-5-some-pop 638 chr1 6990862 6990863 rs7519035 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1967.000000,3041.000000, 0.392772,0.607228, maf-5-some-pop,maf-5-all-pops 638 chr1 6991924 6991925 rs6577395 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1786.000000,3222.000000, 0.356629,0.643371, maf-5-some-pop,maf-5-all-pops 638 chr1 7005343 7005344 rs4908575 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2677.000000,2331.000000, 0.534545,0.465455, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 7006543 7006544 rs12134815 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2660.000000,2348.000000, 0.531150,0.468850, maf-5-some-pop,maf-5-all-pops 638 chr1 7006697 7006698 rs7538627 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,maf-5-all-pops 638 chr1 7013640 7013641 rs10864252 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 638 chr1 7014539 7014540 rs12239076 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3676.000000,1332.000000, 0.734026,0.265974, maf-5-some-pop,maf-5-all-pops 638 chr1 7014638 7014639 rs10864255 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2405.000000,2603.000000, 0.480232,0.519768, maf-5-some-pop,maf-5-all-pops 638 chr1 7018718 7018719 rs11120797 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP, 2 A,G, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,genotype-conflict 638 chr1 7019815 7019816 rs1013248 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2762.000000,2246.000000, 0.551518,0.448482, maf-5-some-pop,maf-5-all-pops 638 chr1 7024221 7024222 rs11120799 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,genotype-conflict 638 chr1 7029261 7029262 rs17030082 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2777.000000,2231.000000, 0.554513,0.445487, maf-5-some-pop,maf-5-all-pops 638 chr1 7035829 7035830 rs6679134 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2354.000000,2654.000000, 0.470048,0.529952, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 7036801 7036802 rs4518923 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop 638 chr1 7040972 7040973 rs6701312 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2490.000000,2518.000000, 0.497204,0.502796, maf-5-some-pop,maf-5-all-pops 638 chr1 7041174 7041175 rs6698901 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2504.000000,2504.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 638 chr1 7054606 7054607 rs12128446 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 638 chr1 7055325 7055326 rs10128022 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1612.000000,3396.000000, 0.321885,0.678115, maf-5-some-pop,maf-5-all-pops 638 chr1 7059149 7059150 rs17030129 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 943.000000,4065.000000, 0.188299,0.811701, maf-5-some-pop,maf-5-all-pops,genotype-conflict 638 chr1 7061429 7061430 rs7525119 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop,maf-5-all-pops 638 chr1 7063386 7063387 rs2898915 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1936.000000,3072.000000,3072.000000,1936.000000, 0.193291,0.306709,0.306709,0.193291, maf-5-some-pop 638 chr1 7069807 7069808 rs12061141 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2901.000000,2107.000000, 0.579273,0.420727, maf-5-some-pop,maf-5-all-pops 638 chr1 7072549 7072550 rs6656639 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 584.000000,4424.000000, 0.116613,0.883387, maf-5-some-pop 638 chr1 7072725 7072726 rs7543531 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2939.000000,2069.000000, 0.586861,0.413139, maf-5-some-pop,maf-5-all-pops 638 chr1 7075497 7075498 rs6665293 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,genotype-conflict 639 chr1 7078363 7078364 rs7543753 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop 639 chr1 7078433 7078434 rs6690584 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 1768.000000,3240.000000, 0.353035,0.646965, maf-5-some-pop,maf-5-all-pops 639 chr1 7079256 7079257 rs6702309 0 + G G A/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 3 A,G,T, 76.000000,4450.000000,482.000000, 0.015176,0.888578,0.096246, maf-5-some-pop,genotype-conflict 639 chr1 7079761 7079762 rs11809898 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop,genotype-conflict 639 chr1 7085509 7085510 rs11120818 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3803.000000,1205.000000, 0.759385,0.240615, maf-5-some-pop,maf-5-all-pops 639 chr1 7088260 7088261 rs11588846 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 639 chr1 7088451 7088452 rs4908586 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop 639 chr1 7088854 7088855 rs4243823 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2477.000000,2531.000000, 0.494609,0.505391, maf-5-some-pop,maf-5-all-pops 639 chr1 7089028 7089029 rs17030160 0 + A A A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 3 A,C,G, 4855.000000,74.000000,79.000000, 0.969449,0.014776,0.015775, maf-5-some-pop 639 chr1 7090698 7090699 rs3986512 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3662.000000,1346.000000,1346.000000,3662.000000, 0.365615,0.134385,0.134385,0.365615, maf-5-some-pop,maf-5-all-pops 639 chr1 7091585 7091586 rs12048981 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1685.000000,3323.000000, 0.336462,0.663538, maf-5-some-pop,maf-5-all-pops 639 chr1 7099265 7099266 rs7517585 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1574.000000,3434.000000, 0.314297,0.685703, maf-5-some-pop 639 chr1 7100291 7100292 rs6577408 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 639 chr1 7100464 7100465 rs7543003 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop 639 chr1 7102943 7102944 rs7524998 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, maf-5-some-pop,maf-5-all-pops 639 chr1 7105314 7105315 rs4074963 0 - G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 639 chr1 7107664 7107665 rs12025462 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3608.000000,1400.000000, 0.720447,0.279553, maf-5-some-pop,maf-5-all-pops 639 chr1 7107713 7107714 rs11580005 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 618.000000,4390.000000, 0.123403,0.876597, maf-5-some-pop 639 chr1 7108085 7108086 rs10746466 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3125.000000,1883.000000, 0.624002,0.375998, maf-5-some-pop,maf-5-all-pops 639 chr1 7113918 7113919 rs11120825 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,T, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,genotype-conflict 639 chr1 7114421 7114422 rs6690314 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1521.000000,3487.000000, 0.303714,0.696286, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7117541 7117542 rs7553100 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, maf-5-some-pop 639 chr1 7119488 7119489 rs10779671 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop,maf-5-all-pops 639 chr1 7125412 7125413 rs3923058 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 924.000000,4084.000000,4084.000000,924.000000, 0.092252,0.407748,0.407748,0.092252, maf-5-some-pop,maf-5-all-pops 639 chr1 7125581 7125582 rs4553221 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7127053 7127054 rs4908596 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1759.000000,3249.000000, 0.351238,0.648762, maf-5-some-pop,maf-5-all-pops 639 chr1 7128442 7128443 rs12354171 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 639 chr1 7141203 7141204 rs17030214 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,genotype-conflict 639 chr1 7141351 7141352 rs9434458 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2583.000000,2425.000000, 0.515775,0.484225, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7141812 7141813 rs11120837 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop 639 chr1 7144892 7144893 rs9434833 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop,maf-5-all-pops 639 chr1 7145416 7145417 rs7511741 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4348.000000,660.000000, 0.868211,0.131789, maf-5-some-pop 639 chr1 7146574 7146575 rs7515073 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1179.000000,3829.000000, 0.235423,0.764577, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7146808 7146809 rs9434834 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7148643 7148644 rs17345768 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4987.000000,21.000000, 0.995807,0.004193, 639 chr1 7149406 7149407 rs9434835 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3141.000000,1867.000000, 0.627196,0.372804, maf-5-some-pop 639 chr1 7150526 7150527 rs2071917 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 2998.000000,2010.000000, 0.598642,0.401358, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7150576 7150577 rs2071918 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7155814 7155815 rs10864279 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,maf-5-all-pops 639 chr1 7156081 7156082 rs11120840 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2005.000000,3003.000000, 0.400359,0.599641, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7156288 7156289 rs11580767 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4214.000000,794.000000, 0.841454,0.158546, maf-5-some-pop 639 chr1 7158560 7158561 rs4908440 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7160953 7160954 rs11120842 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,maf-5-all-pops 639 chr1 7162561 7162562 rs17030312 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 639 chr1 7162896 7162897 rs17030314 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BUSHMAN,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 639 chr1 7164763 7164764 rs7528710 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop 639 chr1 7173894 7173895 rs7527268 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1663.000000,3345.000000, 0.332069,0.667931, maf-5-some-pop,maf-5-all-pops 639 chr1 7179478 7179479 rs7532024 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2904.000000,2104.000000, 0.579872,0.420128, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7179860 7179861 rs10779675 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3839.000000,1169.000000, 0.766573,0.233427, maf-5-some-pop,maf-5-all-pops 639 chr1 7180423 7180424 rs6656160 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop 639 chr1 7180588 7180589 rs17030341 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop 639 chr1 7190805 7190806 rs12032971 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop 639 chr1 7196658 7196659 rs4908600 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4090.000000,918.000000, 0.816693,0.183307, maf-5-some-pop,maf-5-all-pops,genotype-conflict 639 chr1 7196878 7196879 rs12090163 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2619.000000,2389.000000, 0.522963,0.477037, maf-5-some-pop,maf-5-all-pops 639 chr1 7201067 7201068 rs4908601 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2759.000000,2249.000000, 0.550919,0.449081, maf-5-some-pop 639 chr1 7205949 7205950 rs1894647 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 639 chr1 7208216 7208217 rs12751444 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3699.000000,1309.000000, 0.738618,0.261382, maf-5-some-pop 640 chr1 7213618 7213619 rs7527889 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3665.000000,1343.000000, 0.731829,0.268171, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7214373 7214374 rs13376128 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 640 chr1 7220969 7220970 rs4908602 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7221413 7221414 rs6675661 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2501.000000,2507.000000, 0.499401,0.500599, maf-5-some-pop,maf-5-all-pops 640 chr1 7221457 7221458 rs6667429 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7222041 7222042 rs6678950 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3130.000000,1878.000000, 0.625000,0.375000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7222101 7222102 rs11120869 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 640 chr1 7233396 7233397 rs17030465 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 640 chr1 7235627 7235628 rs6687729 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1079.000000,3929.000000, 0.215455,0.784545, maf-5-some-pop,maf-5-all-pops 640 chr1 7236809 7236810 rs6680365 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2319.000000,2689.000000, 0.463059,0.536941, maf-5-some-pop,maf-5-all-pops 640 chr1 7238662 7238663 rs7550518 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1618.000000,3390.000000, 0.323083,0.676917, maf-5-some-pop 640 chr1 7245433 7245434 rs4908605 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2622.000000,2386.000000, 0.523562,0.476438, maf-5-some-pop,maf-5-all-pops 640 chr1 7252365 7252366 rs11120876 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop 640 chr1 7254021 7254022 rs11803793 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4561.000000,447.000000, 0.910743,0.089257, maf-5-some-pop,genotype-conflict 640 chr1 7269282 7269283 rs4908448 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2647.000000,2361.000000, 0.528554,0.471446, maf-5-some-pop,maf-5-all-pops 640 chr1 7269322 7269323 rs4908607 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 640 chr1 7270319 7270320 rs1304711 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 640 chr1 7270537 7270538 rs1304712 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops 640 chr1 7271471 7271472 rs2157499 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 640 chr1 7271650 7271651 rs7514988 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2701.000000,2307.000000, 0.539337,0.460663, maf-5-some-pop,maf-5-all-pops 640 chr1 7273019 7273020 rs12035586 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2369.000000,2639.000000, 0.473043,0.526957, maf-5-some-pop,maf-5-all-pops 640 chr1 7278775 7278776 rs17030589 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 640 chr1 7281491 7281492 rs766156 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop,genotype-conflict 640 chr1 7288506 7288507 rs12144179 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop 640 chr1 7292416 7292417 rs6577424 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1342.000000,3666.000000, 0.267971,0.732029, maf-5-some-pop 640 chr1 7297399 7297400 rs7521056 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop 640 chr1 7299617 7299618 rs4908451 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3613.000000,1395.000000, 0.721446,0.278554, maf-5-some-pop,maf-5-all-pops 640 chr1 7307809 7307810 rs6693725 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1955.000000,3053.000000, 0.390375,0.609625, maf-5-some-pop,maf-5-all-pops 640 chr1 7310350 7310351 rs2067996 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SHGC/AFFYMETRIX,TISHKOFF, 4 A,C,G,T, 325.000000,4683.000000,4683.000000,325.000000, 0.032448,0.467552,0.467552,0.032448, maf-5-some-pop 640 chr1 7312171 7312172 rs1476047 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop,maf-5-all-pops 640 chr1 7312257 7312258 rs6701870 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop 640 chr1 7314230 7314231 rs6577427 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop 640 chr1 7314528 7314529 rs7544004 0 + T T G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops 640 chr1 7314654 7314655 rs6577428 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 640 chr1 7315084 7315085 rs12028181 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3194.000000,1814.000000, 0.637780,0.362220, maf-5-some-pop,maf-5-all-pops 640 chr1 7316030 7316031 rs7512599 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop,maf-5-all-pops 640 chr1 7316113 7316114 rs7549870 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3633.000000,1375.000000, 0.725439,0.274561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7316135 7316136 rs7547519 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1359.000000,3649.000000, 0.271366,0.728634, maf-5-some-pop,maf-5-all-pops 640 chr1 7316667 7316668 rs9988463 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2587.000000,2421.000000, 0.516573,0.483427, maf-5-some-pop,maf-5-all-pops 640 chr1 7317658 7317659 rs6661170 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2439.000000,2569.000000, 0.487021,0.512979, maf-5-some-pop,maf-5-all-pops 640 chr1 7320046 7320047 rs7515140 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,maf-5-all-pops 640 chr1 7320902 7320903 rs7549382 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop 640 chr1 7322159 7322160 rs4908612 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2951.000000,2057.000000, 0.589257,0.410743, maf-5-some-pop,genotype-conflict 640 chr1 7324467 7324468 rs6577430 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop,maf-5-all-pops 640 chr1 7324958 7324959 rs1034453 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,maf-5-all-pops,genotype-conflict 640 chr1 7326200 7326201 rs7517429 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,genotype-conflict 640 chr1 7326519 7326520 rs1034454 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 4565.000000,443.000000, 0.911542,0.088458, maf-5-some-pop 640 chr1 7326674 7326675 rs11120892 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop 640 chr1 7331346 7331347 rs2412147 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1295.000000,3713.000000,3713.000000,1295.000000, 0.129293,0.370707,0.370707,0.129293, maf-5-some-pop,maf-5-all-pops 640 chr1 7334572 7334573 rs7528998 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4022.000000,986.000000, 0.803115,0.196885, maf-5-some-pop,maf-5-all-pops 640 chr1 7336977 7336978 rs4908615 0 + T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2388.000000,2620.000000, 0.476837,0.523163, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7340843 7340844 rs11120894 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1676.000000,3332.000000, 0.334665,0.665335, maf-5-some-pop,genotype-conflict 641 chr1 7343665 7343666 rs6687562 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 641 chr1 7349112 7349113 rs4908453 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1975.000000,3033.000000, 0.394369,0.605631, maf-5-some-pop,maf-5-all-pops 641 chr1 7351433 7351434 rs1894654 0 + C C C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops 641 chr1 7352327 7352328 rs6577435 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 861.000000,4147.000000, 0.171925,0.828075, maf-5-some-pop 641 chr1 7352973 7352974 rs2071924 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop,maf-5-all-pops 641 chr1 7354116 7354117 rs17350193 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 641 chr1 7361337 7361338 rs11120896 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1718.000000,3290.000000, 0.343051,0.656949, maf-5-some-pop,maf-5-all-pops 641 chr1 7362780 7362781 rs9660884 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7363309 7363310 rs10489142 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4132.000000,876.000000, 0.825080,0.174920, maf-5-some-pop 641 chr1 7377522 7377523 rs4908455 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 641 chr1 7379197 7379198 rs7543711 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop 641 chr1 7381140 7381141 rs12134803 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 641 chr1 7391982 7391983 rs11120902 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop 641 chr1 7392593 7392594 rs2301462 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP,YUSUKE, 2 C,T, 2089.000000,2919.000000, 0.417133,0.582867, maf-5-some-pop,maf-5-all-pops 641 chr1 7392781 7392782 rs2301463 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 2504.000000,2504.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 641 chr1 7393319 7393320 rs10864294 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop 641 chr1 7393772 7393773 rs10864295 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3297.000000,1711.000000, 0.658347,0.341653, maf-5-some-pop,maf-5-all-pops 641 chr1 7394817 7394818 rs6691196 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops 641 chr1 7397399 7397400 rs7553372 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1979.000000,3029.000000, 0.395168,0.604832, maf-5-some-pop,maf-5-all-pops 641 chr1 7399628 7399629 rs6674628 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3773.000000,1235.000000, 0.753395,0.246605, maf-5-some-pop 641 chr1 7402479 7402480 rs705681 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1433.000000,3575.000000, 0.286142,0.713858, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7402501 7402502 rs705680 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 641 chr1 7406113 7406114 rs845244 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1455.000000,3553.000000,3553.000000,1455.000000, 0.145268,0.354732,0.354732,0.145268, maf-5-some-pop,maf-5-all-pops 641 chr1 7406418 7406419 rs4908456 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1897.000000,3111.000000, 0.378794,0.621206, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7408417 7408418 rs845241 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3374.000000,1634.000000,1634.000000,3374.000000, 0.336861,0.163139,0.163139,0.336861, maf-5-some-pop,maf-5-all-pops 641 chr1 7409155 7409156 rs845240 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1501.000000,3507.000000,3507.000000,1501.000000, 0.149860,0.350140,0.350140,0.149860, maf-5-some-pop,maf-5-all-pops 641 chr1 7412050 7412051 rs845237 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 411.000000,4597.000000,4597.000000,411.000000, 0.041034,0.458966,0.458966,0.041034, maf-5-some-pop 641 chr1 7412087 7412088 rs4908624 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop,maf-5-all-pops 641 chr1 7412960 7412961 rs4908625 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1443.000000,3565.000000, 0.288139,0.711861, maf-5-some-pop,maf-5-all-pops 641 chr1 7417466 7417467 rs11801158 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 641 chr1 7419299 7419300 rs11120905 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop 641 chr1 7419590 7419591 rs845196 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2565.000000,2443.000000,2443.000000,2565.000000, 0.256090,0.243910,0.243910,0.256090, maf-5-some-pop,maf-5-all-pops 641 chr1 7419679 7419680 rs845195 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2465.000000,2543.000000,2543.000000,2465.000000, 0.246106,0.253894,0.253894,0.246106, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7419773 7419774 rs705675 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 357.000000,4651.000000,4651.000000,357.000000, 0.035643,0.464357,0.464357,0.035643, maf-5-some-pop 641 chr1 7420888 7420889 rs845194 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2613.000000,2395.000000,2395.000000,2613.000000, 0.260883,0.239117,0.239117,0.260883, maf-5-some-pop,maf-5-all-pops 641 chr1 7420903 7420904 rs705672 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2568.000000,2440.000000,2440.000000,2568.000000, 0.256390,0.243610,0.243610,0.256390, maf-5-some-pop,maf-5-all-pops 641 chr1 7422550 7422551 rs845262 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2963.000000,2045.000000, 0.591653,0.408347, maf-5-some-pop,maf-5-all-pops 641 chr1 7425063 7425064 rs1418489 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,genotype-conflict 641 chr1 7425416 7425417 rs845265 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2562.000000,2446.000000, 0.511581,0.488419, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7429091 7429092 rs845222 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2397.000000,2611.000000,2611.000000,2397.000000, 0.239317,0.260683,0.260683,0.239317, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7430393 7430394 rs3752543 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1472.000000,3536.000000, 0.293930,0.706070, maf-5-some-pop,maf-5-all-pops 641 chr1 7432614 7432615 rs11579620 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,genotype-conflict 641 chr1 7433861 7433862 rs845218 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 641 chr1 7434071 7434072 rs845217 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 641 chr1 7443086 7443087 rs845208 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2070.000000,2938.000000,2938.000000,2070.000000, 0.206669,0.293331,0.293331,0.206669, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7444518 7444519 rs4908629 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop 641 chr1 7445434 7445435 rs6677949 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 641 chr1 7448255 7448256 rs845232 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2890.000000,2118.000000,2118.000000,2890.000000, 0.288538,0.211462,0.211462,0.288538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7449970 7449971 rs7524314 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1710.000000,3298.000000, 0.341454,0.658546, maf-5-some-pop,maf-5-all-pops,microattr-tpa 641 chr1 7450005 7450006 rs6577440 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop,maf-5-all-pops 641 chr1 7460432 7460433 rs2097518 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops,genotype-conflict 641 chr1 7468204 7468205 rs845206 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 641 chr1 7468228 7468229 rs6695220 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,G, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop 641 chr1 7468360 7468361 rs10127772 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 641 chr1 7468835 7468836 rs763162 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1094.000000,3914.000000, 0.218450,0.781550, maf-5-some-pop,maf-5-all-pops 641 chr1 7469037 7469038 rs763163 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 641 chr1 7469250 7469251 rs10864301 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7482756 7482757 rs4908637 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop 642 chr1 7486316 7486317 rs12088178 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7491319 7491320 rs17030828 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 642 chr1 7491423 7491424 rs17030829 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 642 chr1 7492119 7492120 rs1193219 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2211.000000,2797.000000, 0.441494,0.558506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7492264 7492265 rs1193220 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2884.000000,2124.000000, 0.575879,0.424121, maf-5-some-pop,maf-5-all-pops 642 chr1 7492990 7492991 rs1193221 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1585.000000,3423.000000, 0.316494,0.683506, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7495372 7495373 rs12092405 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 642 chr1 7502287 7502288 rs17030881 0 + A A A/C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 SingleClassTriAllelic 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 3 A,C,G, 4678.000000,324.000000,6.000000, 0.934105,0.064696,0.001198, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7505840 7505841 rs17030886 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3830.000000,1178.000000, 0.764776,0.235224, maf-5-some-pop 642 chr1 7513251 7513252 rs1193247 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1531.000000,3477.000000,3477.000000,1531.000000, 0.152855,0.347145,0.347145,0.152855, maf-5-some-pop,maf-5-all-pops 642 chr1 7514620 7514621 rs1880808 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3883.000000,1125.000000,1125.000000,3883.000000, 0.387680,0.112320,0.112320,0.387680, maf-5-some-pop 642 chr1 7521584 7521585 rs1616122 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1974.000000,3034.000000,3034.000000,1974.000000, 0.197085,0.302915,0.302915,0.197085, maf-5-some-pop,maf-5-all-pops,microattr-tpa 642 chr1 7522994 7522995 rs7553147 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,T, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 642 chr1 7523779 7523780 rs17445205 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop 642 chr1 7526370 7526371 rs1193238 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,maf-5-all-pops 642 chr1 7527995 7527996 rs1201529 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2684.000000,2324.000000,2324.000000,2684.000000, 0.267971,0.232029,0.232029,0.267971, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7528668 7528669 rs1149331 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2007.000000,3001.000000,3001.000000,2007.000000, 0.200379,0.299621,0.299621,0.200379, maf-5-some-pop,maf-5-all-pops 642 chr1 7528845 7528846 rs1149332 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 636.000000,4372.000000,4372.000000,636.000000, 0.063498,0.436502,0.436502,0.063498, maf-5-some-pop,genotype-conflict 642 chr1 7529086 7529087 rs732400 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,EVA-GONL,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 642 chr1 7529243 7529244 rs732401 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 642 chr1 7531337 7531338 rs6664987 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop,genotype-conflict 642 chr1 7536186 7536187 rs1011127 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2164.000000,2844.000000,2844.000000,2164.000000, 0.216054,0.283946,0.283946,0.216054, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7536237 7536238 rs1011126 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1132.000000,3876.000000,3876.000000,1132.000000, 0.113019,0.386981,0.386981,0.113019, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7536568 7536569 rs11806825 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 571.000000,4437.000000, 0.114018,0.885982, maf-5-some-pop 642 chr1 7536614 7536615 rs11807910 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 642 chr1 7536742 7536743 rs1149339 0 - A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 642 chr1 7536882 7536883 rs17030961 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,genotype-conflict 642 chr1 7537499 7537500 rs1193182 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7541290 7541291 rs2693958 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3160.000000,1848.000000, 0.630990,0.369010, maf-5-some-pop,maf-5-all-pops 642 chr1 7541344 7541345 rs2796483 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2369.000000,2639.000000, 0.473043,0.526957, maf-5-some-pop,maf-5-all-pops 642 chr1 7542022 7542023 rs1619495 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1953.000000,3055.000000, 0.389976,0.610024, maf-5-some-pop,maf-5-all-pops 642 chr1 7546199 7546200 rs1079330 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 3808.000000,1200.000000, 0.760383,0.239617, maf-5-some-pop 642 chr1 7547211 7547212 rs1193163 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 4 A,C,G,T, 4468.000000,540.000000,540.000000,4468.000000, 0.446086,0.053914,0.053914,0.446086, maf-5-some-pop 642 chr1 7549487 7549488 rs17030993 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,maf-5-all-pops,microattr-tpa 642 chr1 7549739 7549740 rs12091424 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop 642 chr1 7551454 7551455 rs7526892 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2218.000000,2790.000000, 0.442891,0.557109, maf-5-some-pop,maf-5-all-pops 642 chr1 7551630 7551631 rs1193230 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1359.000000,3649.000000,3649.000000,1359.000000, 0.135683,0.364317,0.364317,0.135683, maf-5-some-pop,maf-5-all-pops 642 chr1 7551965 7551966 rs12095468 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop 642 chr1 7552325 7552326 rs1750849 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 642 chr1 7552460 7552461 rs1309332 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1712.000000,3296.000000,3296.000000,1712.000000, 0.170927,0.329073,0.329073,0.170927, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7554981 7554982 rs1725269 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3626.000000,1382.000000,1382.000000,3626.000000, 0.362021,0.137979,0.137979,0.362021, maf-5-some-pop,maf-5-all-pops 642 chr1 7557151 7557152 rs10864304 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3895.000000,1113.000000, 0.777756,0.222244, maf-5-some-pop,genotype-conflict 642 chr1 7561761 7561762 rs1750850 0 - G G C/G genomic single unknown 0 0 intron exact 1 MixedObserved 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 642 chr1 7562124 7562125 rs12562695 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop 642 chr1 7562338 7562339 rs1725260 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1383.000000,3625.000000, 0.276158,0.723842, maf-5-some-pop,maf-5-all-pops 642 chr1 7562435 7562436 rs1725261 0 + G G G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop,genotype-conflict 642 chr1 7566788 7566789 rs12033734 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,maf-5-all-pops 642 chr1 7567036 7567037 rs11120955 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 1112.000000,3896.000000, 0.222045,0.777955, maf-5-some-pop 642 chr1 7571462 7571463 rs11120958 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop,genotype-conflict 642 chr1 7571995 7571996 rs6577446 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2175.000000,2833.000000, 0.434305,0.565695, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7572261 7572262 rs749958 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop,maf-5-all-pops 642 chr1 7577761 7577762 rs2177901 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1973.000000,3035.000000,3035.000000,1973.000000, 0.196985,0.303015,0.303015,0.196985, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7581992 7581993 rs4908646 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop,maf-5-all-pops 642 chr1 7590447 7590448 rs1193167 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 1970.000000,3038.000000, 0.393371,0.606629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 642 chr1 7599331 7599332 rs10218514 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop,maf-5-all-pops 642 chr1 7600253 7600254 rs1193169 0 + C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1178.000000,3830.000000, 0.235224,0.764776, maf-5-some-pop,maf-5-all-pops 642 chr1 7600728 7600729 rs17031077 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop 643 chr1 7604777 7604778 rs1725264 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop,maf-5-all-pops 643 chr1 7611605 7611606 rs4908654 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop 643 chr1 7612283 7612284 rs11120970 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2862.000000,2146.000000, 0.571486,0.428514, maf-5-some-pop,maf-5-all-pops 643 chr1 7612385 7612386 rs12562733 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3419.000000,1589.000000, 0.682708,0.317292, maf-5-some-pop,maf-5-all-pops 643 chr1 7615314 7615315 rs17031105 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 643 chr1 7616739 7616740 rs12755955 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2744.000000,2264.000000, 0.547923,0.452077, maf-5-some-pop,maf-5-all-pops 643 chr1 7617554 7617555 rs6697897 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 643 chr1 7621588 7621589 rs6696544 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1673.000000,3335.000000, 0.334065,0.665935, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7626994 7626995 rs17031145 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 643 chr1 7633143 7633144 rs12059360 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 643 chr1 7633259 7633260 rs11120978 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop 643 chr1 7633612 7633613 rs2003397 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop 643 chr1 7633797 7633798 rs4317829 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop,genotype-conflict 643 chr1 7635001 7635002 rs17031148 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 643 chr1 7635252 7635253 rs7536730 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,genotype-conflict 643 chr1 7636970 7636971 rs41319044 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4073.000000,935.000000,935.000000,4073.000000, 0.406649,0.093351,0.093351,0.406649, maf-5-some-pop 643 chr1 7637978 7637979 rs10492961 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2439.000000,2569.000000, 0.487021,0.512979, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7640618 7640619 rs17031150 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop 643 chr1 7641387 7641388 rs873433 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7643047 7643048 rs12076773 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 643 chr1 7644205 7644206 rs12064138 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 643 chr1 7644639 7644640 rs6687621 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 C,T, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 643 chr1 7649714 7649715 rs7519687 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1132.000000,3876.000000, 0.226038,0.773962, maf-5-some-pop,maf-5-all-pops 643 chr1 7666680 7666681 rs6686783 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop 643 chr1 7671307 7671308 rs11577471 0 + C C A/C/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 3 A,C,T, 95.000000,3969.000000,944.000000, 0.018970,0.792532,0.188498, maf-5-some-pop,maf-5-all-pops 643 chr1 7678252 7678253 rs6683993 0 + T T G/T genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop,genotype-conflict 643 chr1 7682236 7682237 rs12139380 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7682488 7682489 rs12139470 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,maf-5-all-pops 643 chr1 7682772 7682773 rs12139551 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1256.000000,3752.000000, 0.250799,0.749201, maf-5-some-pop,maf-5-all-pops 643 chr1 7682793 7682794 rs17031185 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop 643 chr1 7684412 7684413 rs4311910 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop 643 chr1 7688058 7688059 rs17031211 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3618.000000,1390.000000, 0.722444,0.277556, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7688667 7688668 rs12089124 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,maf-5-all-pops 643 chr1 7689388 7689389 rs10495758 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop 643 chr1 7697178 7697179 rs6661496 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 643 chr1 7700747 7700748 rs6659902 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 643 chr1 7705143 7705144 rs12058235 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop 643 chr1 7707286 7707287 rs4908660 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops,genotype-conflict 643 chr1 7710307 7710308 rs17027053 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop,maf-5-all-pops 643 chr1 7711425 7711426 rs12126201 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 643 chr1 7717961 7717962 rs9434882 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1976.000000,3032.000000, 0.394569,0.605431, maf-5-some-pop,maf-5-all-pops 643 chr1 7718092 7718093 rs17376559 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop,genotype-conflict 643 chr1 7718954 7718955 rs17031270 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop 643 chr1 7731729 7731730 rs4908473 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 644 chr1 7733884 7733885 rs17031321 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 644 chr1 7735379 7735380 rs6658296 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,genotype-conflict 644 chr1 7737798 7737799 rs3011926 0 + A A A/G genomic single unknown 0 0 intron exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2045.000000,2963.000000, 0.408347,0.591653, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7738179 7738180 rs4908677 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2737.000000,2271.000000, 0.546526,0.453474, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7742024 7742025 rs947413 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2647.000000,2361.000000, 0.528554,0.471446, maf-5-some-pop,maf-5-all-pops 644 chr1 7748925 7748926 rs947417 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop 644 chr1 7753131 7753132 rs2995032 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7757997 7757998 rs4908680 0 + T T C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 3 C,G,T, 69.000000,4611.000000,328.000000, 0.013778,0.920727,0.065495, maf-5-some-pop,genotype-conflict 644 chr1 7758797 7758798 rs17461217 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,genotype-conflict 644 chr1 7759063 7759064 rs12071434 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop 644 chr1 7770900 7770901 rs2995034 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2706.000000,2302.000000, 0.540335,0.459665, maf-5-some-pop,maf-5-all-pops 644 chr1 7773379 7773380 rs4908684 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3247.000000,1761.000000, 0.648363,0.351637, maf-5-some-pop,maf-5-all-pops 644 chr1 7774070 7774071 rs3121224 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,genotype-conflict 644 chr1 7779800 7779801 rs12078131 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop 644 chr1 7790287 7790288 rs11121007 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop 644 chr1 7795553 7795554 rs4908688 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop 644 chr1 7797170 7797171 rs11121014 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop 644 chr1 7797733 7797734 rs1417986 0 + T T A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,T, 3001.000000,2007.000000, 0.599241,0.400759, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7810542 7810543 rs2066293 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1933.000000,3075.000000, 0.385982,0.614018, maf-5-some-pop 644 chr1 7811960 7811961 rs9919220 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3841.000000,1167.000000, 0.766973,0.233027, maf-5-some-pop,genotype-conflict 644 chr1 7812397 7812398 rs9919223 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1860.000000,3148.000000, 0.371406,0.628594, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7816123 7816124 rs41479450 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,AFFY_GWHS,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop 644 chr1 7816542 7816543 rs4908481 0 + C C A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2845.000000,2163.000000, 0.568091,0.431909, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7817855 7817856 rs2051646 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2741.000000,2267.000000, 0.547324,0.452676, maf-5-some-pop,maf-5-all-pops 644 chr1 7818317 7818318 rs12093175 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,genotype-conflict 644 chr1 7822722 7822723 rs41402249 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,AFFY_GWHS,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 777.000000,4231.000000, 0.155152,0.844848, maf-5-some-pop 644 chr1 7822956 7822957 rs11587880 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 766.000000,4242.000000, 0.152955,0.847045, maf-5-some-pop,maf-5-all-pops 644 chr1 7823835 7823836 rs707454 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 118.000000,4890.000000,4890.000000,118.000000, 0.011781,0.488219,0.488219,0.011781, maf-5-some-pop 644 chr1 7825310 7825311 rs707455 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2935.000000,2073.000000,2073.000000,2935.000000, 0.293031,0.206969,0.206969,0.293031, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,genotype-conflict 644 chr1 7826346 7826347 rs697672 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop,genotype-conflict 644 chr1 7826392 7826393 rs7515025 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop 644 chr1 7829106 7829107 rs1044245 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PJP,SI_EXO,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop 644 chr1 7829285 7829286 rs41454244 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 4 A,C,G,T, 4722.000000,286.000000,286.000000,4722.000000, 0.471446,0.028554,0.028554,0.471446, maf-5-some-pop 644 chr1 7832211 7832212 rs707458 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2198.000000,2810.000000,2810.000000,2198.000000, 0.219449,0.280551,0.280551,0.219449, maf-5-some-pop,maf-5-all-pops 644 chr1 7833301 7833302 rs2239846 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 644 chr1 7833484 7833485 rs11576572 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop 644 chr1 7837841 7837842 rs697673 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 817.000000,4191.000000,4191.000000,817.000000, 0.081569,0.418431,0.418431,0.081569, maf-5-some-pop,microattr-tpa,genotype-conflict 644 chr1 7838690 7838691 rs707460 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2681.000000,2327.000000,2327.000000,2681.000000, 0.267672,0.232328,0.232328,0.267672, maf-5-some-pop,maf-5-all-pops 644 chr1 7841548 7841549 rs697680 0 - A A G/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 389.000000,4619.000000,4619.000000,389.000000, 0.038838,0.461162,0.461162,0.038838, maf-5-some-pop 644 chr1 7846526 7846527 rs836755 0 - A A G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SEQUENOM,SSAHASNP,TISHKOFF, 4 A,C,G,T, 2794.000000,2214.000000,2214.000000,2794.000000, 0.278954,0.221046,0.221046,0.278954, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7847835 7847836 rs228727 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2320.000000,2688.000000,2688.000000,2320.000000, 0.231629,0.268371,0.268371,0.231629, maf-5-some-pop,maf-5-all-pops 644 chr1 7848556 7848557 rs11121023 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7850061 7850062 rs707463 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2142.000000,2866.000000,2866.000000,2142.000000, 0.213858,0.286142,0.286142,0.213858, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7850080 7850081 rs10864315 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3741.000000,1267.000000, 0.747005,0.252995, maf-5-some-pop,maf-5-all-pops 644 chr1 7850217 7850218 rs697686 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2139.000000,2869.000000,2869.000000,2139.000000, 0.213558,0.286442,0.286442,0.213558, maf-5-some-pop,maf-5-all-pops,genotype-conflict 644 chr1 7850897 7850898 rs4908694 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4546.000000,462.000000, 0.907748,0.092252, maf-5-some-pop 644 chr1 7852116 7852117 rs170631 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 644 chr1 7852918 7852919 rs875994 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 501.000000,4507.000000, 0.100040,0.899960, maf-5-some-pop 644 chr1 7858134 7858135 rs1012477 0 - G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 644 chr1 7859190 7859191 rs17031578 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 644 chr1 7863292 7863293 rs228642 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 645 chr1 7879129 7879130 rs228688 0 + T T G/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops,genotype-conflict 645 chr1 7879626 7879627 rs10462018 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PGP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4461.000000,547.000000, 0.890775,0.109225, maf-5-some-pop 645 chr1 7881779 7881780 rs10127838 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop,maf-5-all-pops 645 chr1 7883833 7883834 rs228694 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2304.000000,2704.000000, 0.460064,0.539936, maf-5-some-pop,maf-5-all-pops 645 chr1 7884579 7884580 rs697690 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2124.000000,2884.000000, 0.424121,0.575879, maf-5-some-pop,maf-5-all-pops 645 chr1 7884632 7884633 rs4345826 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 645 chr1 7886423 7886424 rs697693 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1591.000000,3417.000000,3417.000000,1591.000000, 0.158846,0.341154,0.341154,0.158846, maf-5-some-pop,maf-5-all-pops 645 chr1 7888437 7888438 rs17374439 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop 645 chr1 7906007 7906008 rs707472 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops 645 chr1 7908887 7908888 rs228652 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1348.000000,3660.000000,3660.000000,1348.000000, 0.134585,0.365415,0.365415,0.134585, maf-5-some-pop,maf-5-all-pops 645 chr1 7914834 7914835 rs4908486 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HKU-CPLAB,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3963.000000,1045.000000, 0.791334,0.208666, maf-5-some-pop 645 chr1 7917631 7917632 rs228637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4247.000000,761.000000, 0.848043,0.151957, maf-5-some-pop 645 chr1 7919362 7919363 rs17374781 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4540.000000,468.000000, 0.906550,0.093451, maf-5-some-pop 645 chr1 7920422 7920423 rs2859389 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops,genotype-conflict 645 chr1 7921951 7921952 rs531485 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TSC-CSHL, 2 G,T, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop 645 chr1 7923575 7923576 rs17031661 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 645 chr1 7923585 7923586 rs515830 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 666.000000,4342.000000,4342.000000,666.000000, 0.066494,0.433506,0.433506,0.066494, maf-5-some-pop 645 chr1 7926541 7926542 rs504560 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1480.000000,3528.000000,3528.000000,1480.000000, 0.147764,0.352236,0.352236,0.147764, maf-5-some-pop,microattr-tpa 645 chr1 7927455 7927456 rs500508 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1544.000000,3464.000000,3464.000000,1544.000000, 0.154153,0.345847,0.345847,0.154153, maf-5-some-pop,maf-5-all-pops 645 chr1 7927509 7927510 rs857081 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2711.000000,2297.000000,2297.000000,2711.000000, 0.270667,0.229333,0.229333,0.270667, maf-5-some-pop,maf-5-all-pops 645 chr1 7927980 7927981 rs579992 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 29 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4543.000000,465.000000,465.000000,4543.000000, 0.453574,0.046426,0.046426,0.453574, maf-5-some-pop 645 chr1 7928180 7928181 rs2066980 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2793.000000,2215.000000, 0.557708,0.442292, maf-5-some-pop,maf-5-all-pops 645 chr1 7928758 7928759 rs2066978 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 740.000000,4268.000000, 0.147764,0.852236, maf-5-some-pop,genotype-conflict 645 chr1 7931587 7931588 rs228721 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,WI_SSAHASNP, 4 A,C,G,T, 696.000000,4312.000000,4312.000000,696.000000, 0.069489,0.430511,0.430511,0.069489, maf-5-some-pop 645 chr1 7933456 7933457 rs228720 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1672.000000,3336.000000,3336.000000,1672.000000, 0.166933,0.333067,0.333067,0.166933, maf-5-some-pop,maf-5-all-pops 645 chr1 7934153 7934154 rs1891598 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 680.000000,4328.000000,4328.000000,680.000000, 0.067891,0.432109,0.432109,0.067891, maf-5-some-pop 645 chr1 7934170 7934171 rs228719 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1662.000000,3346.000000,3346.000000,1662.000000, 0.165935,0.334065,0.334065,0.165935, maf-5-some-pop,maf-5-all-pops 645 chr1 7944263 7944264 rs228703 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3519.000000,1489.000000,1489.000000,3519.000000, 0.351338,0.148662,0.148662,0.351338, maf-5-some-pop 645 chr1 7952202 7952203 rs1040395 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 645 chr1 7952403 7952404 rs1040396 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 990.000000,4018.000000, 0.197684,0.802316, maf-5-some-pop,genotype-conflict 645 chr1 7955088 7955089 rs227147 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2613.000000,2395.000000, 0.521765,0.478235, maf-5-some-pop,maf-5-all-pops 645 chr1 7956572 7956573 rs41528652 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 7 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4610.000000,398.000000,398.000000,4610.000000, 0.460264,0.039736,0.039736,0.460264, maf-5-some-pop 645 chr1 7961205 7961206 rs227163 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1629.000000,3379.000000, 0.325280,0.674720, maf-5-some-pop,maf-5-all-pops,microattr-tpa 645 chr1 7961293 7961294 rs12068202 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop 645 chr1 7975788 7975789 rs161803 0 - A A C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3368.000000,1640.000000,1640.000000,3368.000000, 0.336262,0.163738,0.163738,0.336262, maf-5-some-pop,genotype-conflict 645 chr1 7989138 7989139 rs161822 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BGI,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3984.000000,1024.000000,1024.000000,3984.000000, 0.397764,0.102236,0.102236,0.397764, maf-5-some-pop 645 chr1 7989285 7989286 rs226484 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3684.000000,1324.000000,1324.000000,3684.000000, 0.367812,0.132188,0.132188,0.367812, maf-5-some-pop 645 chr1 7989565 7989566 rs2453021 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3627.000000,1381.000000, 0.724241,0.275759, maf-5-some-pop 645 chr1 7992614 7992615 rs863171 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2897.000000,2111.000000, 0.578474,0.421526, maf-5-some-pop,maf-5-all-pops 645 chr1 7994419 7994420 rs2493214 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2774.000000,2234.000000, 0.553914,0.446086, maf-5-some-pop,maf-5-all-pops 645 chr1 7995032 7995033 rs9657980 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,CGM_KYOTO,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,ILLUMINA,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO, 4 A,C,G,T, 4972.000000,36.000000,36.000000,4972.000000, 0.496406,0.003594,0.003594,0.496406, genotype-conflict 646 chr1 7999016 7999017 rs9657961 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 4754.000000,254.000000,254.000000,4754.000000, 0.474641,0.025359,0.025359,0.474641, maf-5-some-pop,genotype-conflict 646 chr1 7999601 7999602 rs161811 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1013.000000,3995.000000,3995.000000,1013.000000, 0.101138,0.398862,0.398862,0.101138, maf-5-some-pop,genotype-conflict 646 chr1 8000561 8000562 rs9657956 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 4 A,C,G,T, 255.000000,4753.000000,4753.000000,255.000000, 0.025459,0.474541,0.474541,0.025459, maf-5-some-pop 646 chr1 8007715 8007716 rs2493215 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3122.000000,1886.000000, 0.623403,0.376597, maf-5-some-pop,maf-5-all-pops,genotype-conflict 646 chr1 8007921 8007922 rs226472 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,genotype-conflict 646 chr1 8008967 8008968 rs226473 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4316.000000,692.000000, 0.861821,0.138179, maf-5-some-pop,genotype-conflict 646 chr1 8009762 8009763 rs226474 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1377.000000,3631.000000, 0.274960,0.725040, maf-5-some-pop 646 chr1 8015435 8015436 rs150914 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 G,T, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop 646 chr1 8021777 8021778 rs226249 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,KYUGEN,PJP,SC_JCM,SC_SNP,SHGC,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3192.000000,1816.000000, 0.637380,0.362620, maf-5-some-pop,maf-5-all-pops 646 chr1 8030299 8030300 rs178932 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3692.000000,1316.000000, 0.737220,0.262780, maf-5-some-pop,genotype-conflict 646 chr1 8030855 8030856 rs6703670 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SHGC,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 646 chr1 8032575 8032576 rs7516775 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,genotype-conflict 646 chr1 8035713 8035714 rs161808 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP, 4 A,C,G,T, 4148.000000,860.000000,860.000000,4148.000000, 0.414137,0.085863,0.085863,0.414137, maf-5-some-pop 646 chr1 8037495 8037496 rs161807 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 849.000000,4159.000000, 0.169529,0.830471, maf-5-some-pop 646 chr1 8042735 8042736 rs161801 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop,genotype-conflict 646 chr1 8053134 8053135 rs17367289 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3637.000000,1371.000000, 0.726238,0.273762, maf-5-some-pop,maf-5-all-pops 646 chr1 8066913 8066914 rs225100 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1809.000000,3199.000000,3199.000000,1809.000000, 0.180611,0.319389,0.319389,0.180611, maf-5-some-pop,maf-5-all-pops 646 chr1 8074871 8074872 rs397349 0 + A A A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops 646 chr1 8084354 8084355 rs28624 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 646 chr1 8095359 8095360 rs11121071 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,C, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop 646 chr1 8095499 8095500 rs225132 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3241.000000,1767.000000,1767.000000,3241.000000, 0.323582,0.176418,0.176418,0.323582, maf-5-some-pop,maf-5-all-pops,microattr-tpa 646 chr1 8100139 8100140 rs10489451 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,genotype-conflict 646 chr1 8100638 8100639 rs9434586 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,genotype-conflict 646 chr1 8119261 8119262 rs12093176 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop,genotype-conflict 647 chr1 8129506 8129507 rs12748993 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop 647 chr1 8130839 8130840 rs11121078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop,genotype-conflict 647 chr1 8151223 8151224 rs11121086 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1796.000000,3212.000000, 0.358626,0.641374, maf-5-some-pop,maf-5-all-pops 647 chr1 8161849 8161850 rs11487884 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 647 chr1 8163121 8163122 rs4908727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3488.000000,1520.000000, 0.696486,0.303514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8165399 8165400 rs13374405 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop 647 chr1 8165618 8165619 rs7545677 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8165718 8165719 rs7553544 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1815.000000,3193.000000, 0.362420,0.637580, maf-5-some-pop,maf-5-all-pops 647 chr1 8165974 8165975 rs6703955 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3395.000000,1613.000000, 0.677915,0.322085, maf-5-some-pop 647 chr1 8168633 8168634 rs11121090 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop,maf-5-all-pops 647 chr1 8168992 8168993 rs4369247 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1666.000000,3342.000000, 0.332668,0.667332, maf-5-some-pop,maf-5-all-pops 647 chr1 8173368 8173369 rs7524424 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8174196 8174197 rs4418631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1784.000000,3224.000000, 0.356230,0.643770, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8174414 8174415 rs4420111 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop 647 chr1 8176193 8176194 rs11581227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 994.000000,4014.000000, 0.198482,0.801518, maf-5-some-pop,genotype-conflict 647 chr1 8176625 8176626 rs12134193 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 647 chr1 8182587 8182588 rs6577467 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop 647 chr1 8183484 8183485 rs6698399 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop 647 chr1 8183614 8183615 rs6698516 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop 647 chr1 8187210 8187211 rs4908736 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3208.000000,1800.000000, 0.640575,0.359425, maf-5-some-pop,genotype-conflict 647 chr1 8187299 8187300 rs4908737 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop,genotype-conflict 647 chr1 8191791 8191792 rs12136685 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 647 chr1 8192625 8192626 rs7534867 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop,maf-5-all-pops 647 chr1 8192924 8192925 rs12566369 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2634.000000,2374.000000, 0.525958,0.474042, maf-5-some-pop,maf-5-all-pops 647 chr1 8195225 8195226 rs7529511 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3026.000000,1982.000000, 0.604233,0.395767, maf-5-some-pop,maf-5-all-pops 647 chr1 8195259 8195260 rs17032187 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop,maf-5-all-pops 647 chr1 8196064 8196065 rs9434615 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,genotype-conflict 647 chr1 8206129 8206130 rs6577472 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1869.000000,3139.000000, 0.373203,0.626797, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8206325 8206326 rs6577473 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3351.000000,1657.000000, 0.669129,0.330871, maf-5-some-pop,maf-5-all-pops 647 chr1 8208920 8208921 rs12047115 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3269.000000,1739.000000, 0.652756,0.347244, maf-5-some-pop,maf-5-all-pops 647 chr1 8209129 8209130 rs11121111 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3279.000000,1729.000000, 0.654752,0.345248, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8217086 8217087 rs12048097 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3848.000000,1160.000000, 0.768371,0.231629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 647 chr1 8217476 8217477 rs11121119 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop,maf-5-all-pops 647 chr1 8218114 8218115 rs17509146 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,genotype-conflict 647 chr1 8222155 8222156 rs17032281 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1705.000000,3303.000000, 0.340455,0.659545, maf-5-some-pop,maf-5-all-pops 647 chr1 8224281 8224282 rs10779696 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 927.000000,4081.000000, 0.185104,0.814896, maf-5-some-pop 647 chr1 8232624 8232625 rs12083559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 647 chr1 8237798 8237799 rs11121126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop 647 chr1 8244144 8244145 rs6663882 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3054.000000,1954.000000, 0.609824,0.390176, maf-5-some-pop,maf-5-all-pops 648 chr1 8260198 8260199 rs12140347 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop,maf-5-all-pops 648 chr1 8260833 8260834 rs11587140 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 940.000000,4068.000000, 0.187700,0.812300, maf-5-some-pop 648 chr1 8261392 8261393 rs12138839 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1883.000000,3125.000000, 0.375998,0.624002, maf-5-some-pop,maf-5-all-pops 648 chr1 8262634 8262635 rs17032303 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 648 chr1 8263492 8263493 rs385479 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 170.000000,4838.000000,4838.000000,170.000000, 0.016973,0.483027,0.483027,0.016973, maf-5-some-pop 648 chr1 8264804 8264805 rs418508 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF, 4 A,C,G,T, 242.000000,4766.000000,4766.000000,242.000000, 0.024161,0.475839,0.475839,0.024161, maf-5-some-pop,genotype-conflict 648 chr1 8265933 8265934 rs12059696 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 648 chr1 8268094 8268095 rs11121129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1316.000000,3692.000000, 0.262780,0.737220, maf-5-some-pop,maf-5-all-pops 648 chr1 8268177 8268178 rs383814 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 556.000000,4452.000000,4452.000000,556.000000, 0.055511,0.444489,0.444489,0.055511, maf-5-some-pop,genotype-conflict 648 chr1 8268714 8268715 rs6701941 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1312.000000,3696.000000, 0.261981,0.738019, maf-5-some-pop,maf-5-all-pops 648 chr1 8270489 8270490 rs17032305 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops 648 chr1 8272473 8272474 rs17032307 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 648 chr1 8272525 8272526 rs425371 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2078.000000,2930.000000,2930.000000,2078.000000, 0.207468,0.292532,0.292532,0.207468, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8272695 8272696 rs17509537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,genotype-conflict 648 chr1 8273176 8273177 rs6683603 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1563.000000,3445.000000, 0.312101,0.687899, maf-5-some-pop,maf-5-all-pops 648 chr1 8276908 8276909 rs478128 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3650.000000,1358.000000,1358.000000,3650.000000, 0.364417,0.135583,0.135583,0.364417, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8278898 8278899 rs428180 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3147.000000,1861.000000,1861.000000,3147.000000, 0.314197,0.185803,0.185803,0.314197, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8278928 8278929 rs428046 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4397.000000,611.000000,611.000000,4397.000000, 0.438998,0.061002,0.061002,0.438998, maf-5-some-pop 648 chr1 8280423 8280424 rs10864338 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4513.000000,495.000000, 0.901158,0.098842, maf-5-some-pop 648 chr1 8280516 8280517 rs10864340 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 648 chr1 8281563 8281564 rs506403 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop 648 chr1 8282628 8282629 rs6699685 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,genotype-conflict 648 chr1 8284656 8284657 rs394282 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,T, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 648 chr1 8286664 8286665 rs403623 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 648 chr1 8286692 8286693 rs12049468 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1256.000000,3752.000000, 0.250799,0.749201, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8286815 8286816 rs388933 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1532.000000,3476.000000,3476.000000,1532.000000, 0.152955,0.347045,0.347045,0.152955, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8287390 8287391 rs11121137 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1405.000000,3603.000000, 0.280551,0.719449, maf-5-some-pop,maf-5-all-pops 648 chr1 8287499 8287500 rs406236 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 288.000000,4720.000000,4720.000000,288.000000, 0.028754,0.471246,0.471246,0.028754, maf-5-some-pop 648 chr1 8288297 8288298 rs7554129 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 648 chr1 8288439 8288440 rs367915 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3245.000000,1763.000000,1763.000000,3245.000000, 0.323982,0.176018,0.176018,0.323982, maf-5-some-pop,maf-5-all-pops 648 chr1 8290278 8290279 rs534231 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1998.000000,3010.000000, 0.398962,0.601038, maf-5-some-pop,maf-5-all-pops 648 chr1 8295129 8295130 rs7528376 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2023.000000,2985.000000, 0.403954,0.596046, maf-5-some-pop,maf-5-all-pops 648 chr1 8304606 8304607 rs4908744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1322.000000,3686.000000, 0.263978,0.736022, maf-5-some-pop,maf-5-all-pops 648 chr1 8312581 8312582 rs12089847 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 C,T, 4977.000000,31.000000, 0.993810,0.006190, maf-5-some-pop 648 chr1 8313893 8313894 rs4301655 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1652.000000,3356.000000, 0.329872,0.670128, maf-5-some-pop,maf-5-all-pops 648 chr1 8316731 8316732 rs2046845 0 + A A A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2025.000000,2983.000000, 0.404353,0.595647, maf-5-some-pop,maf-5-all-pops 648 chr1 8317957 8317958 rs7520292 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1497.000000,3511.000000, 0.298922,0.701078, maf-5-some-pop,maf-5-all-pops 648 chr1 8320044 8320045 rs389709 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3683.000000,1325.000000,1325.000000,3683.000000, 0.367712,0.132288,0.132288,0.367712, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8325841 8325842 rs10779700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 648 chr1 8329709 8329710 rs2661869 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2993.000000,2015.000000,2015.000000,2993.000000, 0.298822,0.201178,0.201178,0.298822, maf-5-some-pop,maf-5-all-pops 648 chr1 8333278 8333279 rs433590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2061.000000,2947.000000, 0.411542,0.588458, maf-5-some-pop,maf-5-all-pops 648 chr1 8337973 8337974 rs10864343 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 648 chr1 8342711 8342712 rs159631 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 648 chr1 8343280 8343281 rs17032406 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,genotype-conflict 648 chr1 8343646 8343647 rs17032407 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 648 chr1 8355466 8355467 rs3850464 0 + T T A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2590.000000,2418.000000, 0.517173,0.482827, maf-5-some-pop,maf-5-all-pops 648 chr1 8357220 8357221 rs11121152 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8365949 8365950 rs7532257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop 648 chr1 8367703 8367704 rs12031739 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop,genotype-conflict 648 chr1 8371185 8371186 rs11121159 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3415.000000,1593.000000, 0.681909,0.318091, maf-5-some-pop 648 chr1 8372535 8372536 rs1107284 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2611.000000,2397.000000,2397.000000,2611.000000, 0.260683,0.239317,0.239317,0.260683, maf-5-some-pop,maf-5-all-pops,microattr-tpa 648 chr1 8375912 8375913 rs1466654 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2991.000000,2017.000000,2017.000000,2991.000000, 0.298622,0.201378,0.201378,0.298622, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8386729 8386730 rs9628987 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop,genotype-conflict 648 chr1 8387462 8387463 rs11584036 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,maf-5-all-pops,genotype-conflict 648 chr1 8388570 8388571 rs1473309 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,BGI,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop 649 chr1 8393217 8393218 rs7518563 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 649 chr1 8394235 8394236 rs12711517 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,genotype-conflict 649 chr1 8394795 8394796 rs10864350 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3357.000000,1651.000000, 0.670327,0.329673, maf-5-some-pop,genotype-conflict 649 chr1 8397802 8397803 rs7520373 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3437.000000,1571.000000, 0.686302,0.313698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 649 chr1 8403010 8403011 rs6690548 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop 649 chr1 8423509 8423510 rs10779702 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 649 chr1 8425496 8425497 rs902357 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 71.000000,4937.000000,4937.000000,71.000000, 0.007089,0.492911,0.492911,0.007089, 649 chr1 8436130 8436131 rs17380831 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 649 chr1 8440056 8440057 rs17032511 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 649 chr1 8457622 8457623 rs1443929 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4178.000000,830.000000, 0.834265,0.165735, maf-5-some-pop 649 chr1 8468371 8468372 rs301791 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 649 chr1 8473812 8473813 rs12754538 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3501.000000,1507.000000, 0.699081,0.300919, maf-5-some-pop 649 chr1 8487322 8487323 rs301797 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1115.000000,3893.000000, 0.222644,0.777356, maf-5-some-pop 649 chr1 8487514 8487515 rs17032553 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,genotype-conflict 649 chr1 8490319 8490320 rs302719 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,AFFY_GWHS,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop,genotype-conflict 649 chr1 8490387 8490388 rs17032569 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop 649 chr1 8490602 8490603 rs301800 0 + T T C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4243.000000,765.000000, 0.847244,0.152756, maf-5-some-pop,genotype-conflict 649 chr1 8495518 8495519 rs17032575 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 649 chr1 8495589 8495590 rs172531 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop 649 chr1 8495944 8495945 rs301801 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop 649 chr1 8497306 8497307 rs301802 0 + T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 649 chr1 8499704 8499705 rs6694635 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 650 chr1 8522552 8522553 rs11121182 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 719.000000,4289.000000, 0.143570,0.856430, maf-5-some-pop,genotype-conflict 650 chr1 8526641 8526642 rs11806357 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,genotype-conflict 650 chr1 8529140 8529141 rs751790 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop 650 chr1 8540911 8540912 rs12568293 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 705.000000,4303.000000, 0.140775,0.859225, maf-5-some-pop,genotype-conflict 650 chr1 8544866 8544867 rs1884354 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 115.000000,4893.000000,4893.000000,115.000000, 0.011482,0.488518,0.488518,0.011482, maf-5-some-pop 650 chr1 8546913 8546914 rs2092861 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,ABI,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 276.000000,4732.000000,4732.000000,276.000000, 0.027556,0.472444,0.472444,0.027556, maf-5-some-pop,genotype-conflict 650 chr1 8574971 8574972 rs6577491 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1740.000000,3268.000000, 0.347444,0.652556, maf-5-some-pop,maf-5-all-pops 650 chr1 8581014 8581015 rs6656249 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop 650 chr1 8589850 8589851 rs12077062 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop 650 chr1 8596741 8596742 rs17032657 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 650 chr1 8596892 8596893 rs1463051 0 - T T A/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 650 chr1 8608105 8608106 rs926951 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 791.000000,4217.000000,4217.000000,791.000000, 0.078974,0.421026,0.421026,0.078974, maf-5-some-pop 650 chr1 8610504 8610505 rs4581300 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 819.000000,4189.000000,4189.000000,819.000000, 0.081769,0.418231,0.418231,0.081769, maf-5-some-pop,genotype-conflict 650 chr1 8612103 8612104 rs6577499 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 650 chr1 8631502 8631503 rs17032677 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,genotype-conflict 650 chr1 8634289 8634290 rs12122851 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop,maf-5-all-pops 650 chr1 8643439 8643440 rs11807092 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,genotype-conflict 650 chr1 8643496 8643497 rs17386406 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,genotype-conflict 650 chr1 8644006 8644007 rs7537982 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8652153 8652154 rs6675857 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 3515.000000,1493.000000, 0.701877,0.298123, maf-5-some-pop,genotype-conflict 651 chr1 8654304 8654305 rs11121204 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3131.000000,1877.000000, 0.625200,0.374800, maf-5-some-pop,maf-5-all-pops 651 chr1 8655494 8655495 rs7523186 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop,maf-5-all-pops 651 chr1 8663820 8663821 rs12136766 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8685036 8685037 rs6577506 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 807.000000,4201.000000, 0.161142,0.838858, maf-5-some-pop 651 chr1 8690902 8690903 rs17032714 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,genotype-conflict 651 chr1 8698609 8698610 rs10864359 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop,genotype-conflict 651 chr1 8702529 8702530 rs6679128 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 651 chr1 8704058 8704059 rs2401138 0 + G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3254.000000,1754.000000, 0.649760,0.350240, maf-5-some-pop,maf-5-all-pops 651 chr1 8705036 8705037 rs1463053 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2969.000000,2039.000000, 0.592851,0.407149, maf-5-some-pop,maf-5-all-pops 651 chr1 8726720 8726721 rs10864361 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3413.000000,1595.000000, 0.681510,0.318490, maf-5-some-pop,maf-5-all-pops 651 chr1 8728977 8728978 rs4908506 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 1928.000000,3080.000000, 0.384984,0.615016, maf-5-some-pop,maf-5-all-pops 651 chr1 8741400 8741401 rs7556169 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2051.000000,2957.000000, 0.409545,0.590455, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8741437 8741438 rs12122666 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 700.000000,4308.000000, 0.139776,0.860224, maf-5-some-pop 651 chr1 8751267 8751268 rs6658881 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 884.000000,4124.000000, 0.176518,0.823482, maf-5-some-pop 651 chr1 8755281 8755282 rs11121220 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 651 chr1 8759553 8759554 rs12025126 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1732.000000,3276.000000, 0.345847,0.654153, maf-5-some-pop,maf-5-all-pops,microattr-tpa 651 chr1 8767310 8767311 rs10864363 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 G,T, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop,genotype-conflict 651 chr1 8767528 8767529 rs11121221 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3911.000000,1097.000000, 0.780950,0.219050, maf-5-some-pop,maf-5-all-pops,genotype-conflict 651 chr1 8767779 8767780 rs10864364 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop 651 chr1 8769679 8769680 rs12083728 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 651 chr1 8769727 8769728 rs4908773 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop 651 chr1 8770882 8770883 rs7553298 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop,maf-5-all-pops 651 chr1 8776923 8776924 rs17032752 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop,genotype-conflict 652 chr1 8794230 8794231 rs11804956 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM, 2 A,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 652 chr1 8804236 8804237 rs4908777 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4045.000000,963.000000, 0.807708,0.192292, maf-5-some-pop,maf-5-all-pops 652 chr1 8804887 8804888 rs4908778 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4079.000000,929.000000, 0.814497,0.185503, maf-5-some-pop,maf-5-all-pops 652 chr1 8806344 8806345 rs4908510 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 977.000000,4031.000000, 0.195088,0.804912, maf-5-some-pop,maf-5-all-pops,genotype-conflict 652 chr1 8808184 8808185 rs12024032 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 652 chr1 8808819 8808820 rs12567502 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop 652 chr1 8810340 8810341 rs10492963 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 833.000000,4175.000000,4175.000000,833.000000, 0.083167,0.416833,0.416833,0.083167, maf-5-some-pop 652 chr1 8812213 8812214 rs12028160 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2238.000000,2770.000000, 0.446885,0.553115, maf-5-some-pop,maf-5-all-pops 652 chr1 8812389 8812390 rs4908511 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2761.000000,2247.000000, 0.551318,0.448682, maf-5-some-pop,maf-5-all-pops 652 chr1 8828249 8828250 rs17032767 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,genotype-conflict 652 chr1 8831282 8831283 rs11121229 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop,maf-5-all-pops 652 chr1 8832498 8832499 rs10864366 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3772.000000,1236.000000, 0.753195,0.246805, maf-5-some-pop,genotype-conflict 652 chr1 8838527 8838528 rs12123076 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3937.000000,1071.000000, 0.786142,0.213858, maf-5-some-pop,genotype-conflict 652 chr1 8845198 8845199 rs11586056 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,C, 587.000000,4421.000000, 0.117212,0.882788, maf-5-some-pop 652 chr1 8857103 8857104 rs6577525 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,genotype-conflict 652 chr1 8870875 8870876 rs7517436 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop 652 chr1 8871964 8871965 rs7546225 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3903.000000,1105.000000, 0.779353,0.220647, maf-5-some-pop 652 chr1 8876391 8876392 rs11121237 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop,maf-5-all-pops 652 chr1 8886421 8886422 rs6678590 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3813.000000,1195.000000, 0.761382,0.238618, maf-5-some-pop 652 chr1 8898806 8898807 rs11582339 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops 652 chr1 8899304 8899305 rs6577532 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1159.000000,3849.000000, 0.231430,0.768570, maf-5-some-pop 652 chr1 8903930 8903931 rs12124851 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop,genotype-conflict 652 chr1 8910346 8910347 rs12135416 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 829.000000,4179.000000, 0.165535,0.834465, maf-5-some-pop 652 chr1 8910704 8910705 rs6673587 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop 653 chr1 8918312 8918313 rs10864368 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop 653 chr1 8918794 8918795 rs11121247 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop 653 chr1 8925111 8925112 rs2765507 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 653 chr1 8930368 8930369 rs2781060 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1091.000000,3917.000000,3917.000000,1091.000000, 0.108926,0.391074,0.391074,0.108926, maf-5-some-pop 653 chr1 8931148 8931149 rs2274971 0 - C C A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 1735.000000,3273.000000,3273.000000,1735.000000, 0.173223,0.326777,0.326777,0.173223, maf-5-some-pop 653 chr1 8931362 8931363 rs1006951 0 - G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 9 1000GENOMES,ABI,AFFY,EGP_SNPS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 653 chr1 8931462 8931463 rs1006950 0 - T T A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 4 A,C,G,T, 1222.000000,3786.000000,3786.000000,1222.000000, 0.122005,0.377995,0.377995,0.122005, maf-5-some-pop,genotype-conflict 653 chr1 8933241 8933242 rs6660137 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4246.000000,762.000000, 0.847843,0.152157, maf-5-some-pop 653 chr1 8964838 8964839 rs1572138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,TSC-CSHL, 2 C,T, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop,genotype-conflict 653 chr1 8968999 8969000 rs7526401 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1064.000000,3944.000000, 0.212460,0.787540, maf-5-some-pop,maf-5-all-pops 653 chr1 8969218 8969219 rs7534552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops,genotype-conflict 653 chr1 8982905 8982906 rs4908796 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2477.000000,2531.000000, 0.494609,0.505391, maf-5-some-pop,maf-5-all-pops 653 chr1 8983654 8983655 rs11806366 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1778.000000,3230.000000, 0.355032,0.644968, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia,genotype-conflict 653 chr1 8983767 8983768 rs11805233 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 2421.000000,2587.000000, 0.483427,0.516573, maf-5-some-pop,maf-5-all-pops 653 chr1 8985035 8985036 rs10864370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3698.000000,1310.000000, 0.738419,0.261581, maf-5-some-pop,maf-5-all-pops 653 chr1 8987258 8987259 rs2765512 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 653 chr1 8989234 8989235 rs6577539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop,genotype-conflict 653 chr1 8990310 8990311 rs914999 0 + G G C/G genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 653 chr1 8991115 8991116 rs2781079 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1622.000000,3386.000000, 0.323882,0.676118, maf-5-some-pop 653 chr1 8991140 8991141 rs4609454 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2286.000000,2722.000000, 0.456470,0.543530, maf-5-some-pop,maf-5-all-pops 653 chr1 8993691 8993692 rs11121271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2067.000000,2941.000000, 0.412740,0.587260, maf-5-some-pop,maf-5-all-pops 653 chr1 8993866 8993867 rs7417097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1728.000000,3280.000000, 0.345048,0.654952, maf-5-some-pop,maf-5-all-pops 653 chr1 8994111 8994112 rs4418632 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops 653 chr1 8994466 8994467 rs9435064 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1608.000000,3400.000000, 0.321086,0.678914, maf-5-some-pop,maf-5-all-pops 653 chr1 9003177 9003178 rs6684149 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop 653 chr1 9003396 9003397 rs17032887 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop 653 chr1 9005268 9005269 rs11809994 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,C, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,genotype-conflict 653 chr1 9005319 9005320 rs1409147 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop,genotype-conflict 653 chr1 9007555 9007556 rs942969 0 + G G C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 3774.000000,1234.000000, 0.753594,0.246406, maf-5-some-pop,maf-5-all-pops 653 chr1 9008738 9008739 rs12070475 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1673.000000,3335.000000, 0.334065,0.665935, maf-5-some-pop,maf-5-all-pops 653 chr1 9008943 9008944 rs10864372 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3343.000000,1665.000000, 0.667532,0.332468, maf-5-some-pop,maf-5-all-pops 653 chr1 9009405 9009406 rs2274327 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 23 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BSBIO,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3655.000000,1353.000000, 0.729832,0.270168, maf-5-some-pop,genotype-conflict 653 chr1 9009705 9009706 rs12738365 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3414.000000,1594.000000, 0.681709,0.318291, maf-5-some-pop,maf-5-all-pops 653 chr1 9011626 9011627 rs3765967 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 680.000000,4328.000000,4328.000000,680.000000, 0.067891,0.432109,0.432109,0.067891, maf-5-some-pop,maf-5-all-pops,genotype-conflict 653 chr1 9012690 9012691 rs12061961 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 653 chr1 9017090 9017091 rs2274332 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SI_EXO,SSMP,YUSUKE, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,maf-5-all-pops 653 chr1 9017203 9017204 rs2274333 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 27 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3286.000000,1722.000000, 0.656150,0.343850, maf-5-some-pop,maf-5-all-pops 653 chr1 9018033 9018034 rs7545200 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1944.000000,3064.000000, 0.388179,0.611821, maf-5-some-pop,genotype-conflict 653 chr1 9018930 9018931 rs12061974 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,TISHKOFF, 2 A,G, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 653 chr1 9027390 9027391 rs4466678 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop 653 chr1 9036013 9036014 rs12564569 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop 653 chr1 9036613 9036614 rs12127547 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop 653 chr1 9037272 9037273 rs6697763 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,genotype-conflict 653 chr1 9039021 9039022 rs6577546 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop,maf-5-all-pops,genotype-conflict 653 chr1 9039703 9039704 rs6680186 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 653 chr1 9042622 9042623 rs11808275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,TISHKOFF, 2 A,G, 49.000000,4959.000000, 0.009784,0.990216, maf-5-some-pop 654 chr1 9045123 9045124 rs7513804 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1357.000000,3651.000000, 0.270966,0.729034, maf-5-some-pop,maf-5-all-pops 654 chr1 9054048 9054049 rs11121289 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 654 chr1 9054583 9054584 rs10746482 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2038.000000,2970.000000, 0.406949,0.593051, maf-5-some-pop,maf-5-all-pops 654 chr1 9060169 9060170 rs4908803 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2925.000000,2083.000000, 0.584065,0.415935, maf-5-some-pop,genotype-conflict 654 chr1 9060209 9060210 rs17392147 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop 654 chr1 9061041 9061042 rs7547865 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop 654 chr1 9061160 9061161 rs7516862 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 551.000000,4457.000000, 0.110024,0.889976, maf-5-some-pop 654 chr1 9062951 9062952 rs17389948 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop,genotype-conflict 654 chr1 9067659 9067660 rs17033021 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop 654 chr1 9067673 9067674 rs17033022 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 654 chr1 9068052 9068053 rs17027181 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 654 chr1 9068212 9068213 rs17027186 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,genotype-conflict 654 chr1 9068385 9068386 rs7530465 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1498.000000,3510.000000, 0.299121,0.700879, maf-5-some-pop,maf-5-all-pops 654 chr1 9072772 9072773 rs12076084 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3151.000000,1857.000000, 0.629193,0.370807, maf-5-some-pop,maf-5-all-pops 654 chr1 9074464 9074465 rs12063980 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop,genotype-conflict 654 chr1 9079153 9079154 rs12031065 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3020.000000,1988.000000, 0.603035,0.396965, maf-5-some-pop 654 chr1 9080965 9080966 rs769902 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3396.000000,1612.000000,1612.000000,3396.000000, 0.339058,0.160942,0.160942,0.339058, maf-5-some-pop,maf-5-all-pops 654 chr1 9084923 9084924 rs2027222 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 916.000000,4092.000000,4092.000000,916.000000, 0.091454,0.408546,0.408546,0.091454, maf-5-some-pop,genotype-conflict 654 chr1 9093808 9093809 rs6667506 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 2630.000000,2378.000000, 0.525160,0.474840, maf-5-some-pop,maf-5-all-pops 654 chr1 9094530 9094531 rs707452 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 654 chr1 9095493 9095494 rs10864381 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2381.000000,2627.000000, 0.475439,0.524561, maf-5-some-pop,maf-5-all-pops 654 chr1 9098229 9098230 rs875996 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 708.000000,4300.000000,4300.000000,708.000000, 0.070687,0.429313,0.429313,0.070687, maf-5-some-pop 654 chr1 9098271 9098272 rs875995 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1443.000000,3565.000000,3565.000000,1443.000000, 0.144069,0.355931,0.355931,0.144069, maf-5-some-pop,maf-5-all-pops 654 chr1 9102956 9102957 rs4908526 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2560.000000,2448.000000, 0.511182,0.488818, maf-5-some-pop,maf-5-all-pops 654 chr1 9114090 9114091 rs7521322 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2539.000000,2469.000000, 0.506989,0.493011, maf-5-some-pop,maf-5-all-pops 654 chr1 9116742 9116743 rs12080175 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1665.000000,3343.000000, 0.332468,0.667532, maf-5-some-pop 654 chr1 9116898 9116899 rs2505972 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2708.000000,2300.000000, 0.540735,0.459265, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9118422 9118423 rs17842190 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop 654 chr1 9119027 9119028 rs6694527 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 654 chr1 9122556 9122557 rs1612895 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1910.000000,3098.000000, 0.381390,0.618610, maf-5-some-pop 654 chr1 9127457 9127458 rs3765962 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 654 chr1 9138466 9138467 rs11121317 0 + G G A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 1495.000000,3513.000000, 0.298522,0.701478, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9138889 9138890 rs1327257 0 + A A A/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 3 A,G,T, 4052.000000,942.000000,14.000000, 0.809105,0.188099,0.002796, maf-5-some-pop 654 chr1 9140077 9140078 rs12726360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1503.000000,3505.000000, 0.300120,0.699880, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9143331 9143332 rs770036 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 654 chr1 9145012 9145013 rs12057692 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1687.000000,3321.000000, 0.336861,0.663139, maf-5-some-pop,maf-5-all-pops 654 chr1 9146291 9146292 rs12402657 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 974.000000,4034.000000, 0.194489,0.805511, maf-5-some-pop 654 chr1 9150870 9150871 rs11487892 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop 654 chr1 9151324 9151325 rs12080794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4129.000000,879.000000, 0.824481,0.175519, maf-5-some-pop,maf-5-all-pops,microattr-tpa,genotype-conflict 654 chr1 9151749 9151750 rs11121320 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop,maf-5-all-pops 654 chr1 9158764 9158765 rs1751670 0 + A A A/C/G genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 24 1000GENOMES,AFFY,AFFY_GWHS,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,genotype-conflict 654 chr1 9158996 9158997 rs729829 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, 2 C,T, 2710.000000,2298.000000, 0.541134,0.458866, maf-5-some-pop,maf-5-all-pops,genotype-conflict 654 chr1 9164132 9164133 rs3737669 0 - G G C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2466.000000,2542.000000,2542.000000,2466.000000, 0.246206,0.253794,0.253794,0.246206, maf-5-some-pop 654 chr1 9166343 9166344 rs6693258 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 654 chr1 9170877 9170878 rs770028 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 769.000000,4239.000000,4239.000000,769.000000, 0.076777,0.423223,0.423223,0.076777, maf-5-some-pop 655 chr1 9177316 9177317 rs1705299 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 788.000000,4220.000000,4220.000000,788.000000, 0.078674,0.421326,0.421326,0.078674, maf-5-some-pop 655 chr1 9190253 9190254 rs12726928 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 655 chr1 9197460 9197461 rs6577553 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop 655 chr1 9205672 9205673 rs4243826 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 823.000000,4185.000000, 0.164337,0.835663, maf-5-some-pop,genotype-conflict 655 chr1 9213176 9213177 rs2666433 0 - A A C/T genomic single unknown 0 0 near-gene-5 exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1300.000000,3708.000000,3708.000000,1300.000000, 0.129792,0.370208,0.370208,0.129792, maf-5-some-pop,maf-5-all-pops 655 chr1 9218720 9218721 rs12119878 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 G,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 655 chr1 9219382 9219383 rs6577556 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,genotype-conflict 655 chr1 9223159 9223160 rs797252 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4603.000000,405.000000,405.000000,4603.000000, 0.459565,0.040435,0.040435,0.459565, maf-5-some-pop 655 chr1 9225183 9225184 rs2516091 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2780.000000,2228.000000,2228.000000,2780.000000, 0.277556,0.222444,0.222444,0.277556, maf-5-some-pop,maf-5-all-pops 655 chr1 9228623 9228624 rs11802925 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 946.000000,4062.000000, 0.188898,0.811102, maf-5-some-pop,genotype-conflict 655 chr1 9234142 9234143 rs4908527 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3053.000000,1955.000000, 0.609625,0.390375, maf-5-some-pop,maf-5-all-pops 655 chr1 9234362 9234363 rs809972 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3814.000000,1194.000000, 0.761581,0.238419, maf-5-some-pop 655 chr1 9240257 9240258 rs6669897 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop 655 chr1 9245571 9245572 rs4908817 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,genotype-conflict 655 chr1 9248876 9248877 rs744900 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1796.000000,3212.000000,3212.000000,1796.000000, 0.179313,0.320687,0.320687,0.179313, maf-5-some-pop,maf-5-all-pops 655 chr1 9250855 9250856 rs2157480 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3197.000000,1811.000000,1811.000000,3197.000000, 0.319189,0.180811,0.180811,0.319189, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9250990 9250991 rs10864392 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3397.000000,1611.000000, 0.678315,0.321685, maf-5-some-pop,maf-5-all-pops 655 chr1 9260899 9260900 rs743973 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3261.000000,1747.000000, 0.651158,0.348842, maf-5-some-pop,maf-5-all-pops 655 chr1 9260940 9260941 rs737261 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 655 chr1 9267586 9267587 rs17033446 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop 655 chr1 9267708 9267709 rs9435127 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 655 chr1 9267899 9267900 rs9434717 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3417.000000,1591.000000, 0.682308,0.317692, maf-5-some-pop,maf-5-all-pops 655 chr1 9274445 9274446 rs6577561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1739.000000,3269.000000, 0.347244,0.652756, maf-5-some-pop,maf-5-all-pops 655 chr1 9275193 9275194 rs1009941 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2477.000000,2531.000000,2531.000000,2477.000000, 0.247304,0.252696,0.252696,0.247304, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9278141 9278142 rs1009940 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2221.000000,2787.000000,2787.000000,2221.000000, 0.221745,0.278255,0.278255,0.221745, maf-5-some-pop,maf-5-all-pops 655 chr1 9280172 9280173 rs17033526 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 655 chr1 9280647 9280648 rs7534423 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 655 chr1 9281715 9281716 rs12402600 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 655 chr1 9285720 9285721 rs10489436 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 3603.000000,1405.000000,1405.000000,3603.000000, 0.359724,0.140276,0.140276,0.359724, maf-5-some-pop,maf-5-all-pops 655 chr1 9286017 9286018 rs12072683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3193.000000,1815.000000, 0.637580,0.362420, maf-5-some-pop,maf-5-all-pops 655 chr1 9291035 9291036 rs2157479 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3788.000000,1220.000000,1220.000000,3788.000000, 0.378195,0.121805,0.121805,0.378195, maf-5-some-pop,maf-5-all-pops 655 chr1 9292081 9292082 rs3753271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3844.000000,1164.000000, 0.767572,0.232428, maf-5-some-pop,maf-5-all-pops 655 chr1 9292281 9292282 rs9434723 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9304204 9304205 rs2239561 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3605.000000,1403.000000,1403.000000,3605.000000, 0.359924,0.140076,0.140076,0.359924, maf-5-some-pop,maf-5-all-pops,genotype-conflict 655 chr1 9304730 9304731 rs2239560 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 979.000000,4029.000000,4029.000000,979.000000, 0.097744,0.402256,0.402256,0.097744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9308036 9308037 rs9435151 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 656 chr1 9315846 9315847 rs2268170 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 867.000000,4141.000000,4141.000000,867.000000, 0.086562,0.413438,0.413438,0.086562, maf-5-some-pop,genotype-conflict 656 chr1 9327412 9327413 rs11121354 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop 656 chr1 9330478 9330479 rs11121356 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SI_EXO,TISHKOFF, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, maf-5-some-pop 656 chr1 9331951 9331952 rs9435168 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1972.000000,3036.000000, 0.393770,0.606230, maf-5-some-pop,microattr-tpa,genotype-conflict 656 chr1 9331972 9331973 rs2097520 0 - C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 656 chr1 9332702 9332703 rs7517538 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2184.000000,2824.000000, 0.436102,0.563898, maf-5-some-pop,maf-5-all-pops 656 chr1 9334713 9334714 rs12093524 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,G, 1783.000000,3225.000000, 0.356030,0.643970, maf-5-some-pop,maf-5-all-pops 656 chr1 9335744 9335745 rs6688233 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop,maf-5-all-pops 656 chr1 9339204 9339205 rs11590326 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop 656 chr1 9344414 9344415 rs11803236 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9355896 9355897 rs2075973 0 - A A C/G/T genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic,InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3568.000000,1440.000000,1440.000000,3568.000000, 0.356230,0.143770,0.143770,0.356230, maf-5-some-pop 656 chr1 9355935 9355936 rs9442514 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1354.000000,3654.000000,3654.000000,1354.000000, 0.135184,0.364816,0.364816,0.135184, maf-5-some-pop 656 chr1 9356064 9356065 rs2072734 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3790.000000,1218.000000,1218.000000,3790.000000, 0.378395,0.121605,0.121605,0.378395, maf-5-some-pop,maf-5-all-pops 656 chr1 9357723 9357724 rs11121365 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 656 chr1 9357959 9357960 rs563347 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4548.000000,460.000000, 0.908147,0.091853, maf-5-some-pop 656 chr1 9358242 9358243 rs621846 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2784.000000,2224.000000,2224.000000,2784.000000, 0.277955,0.222045,0.222045,0.277955, maf-5-some-pop,maf-5-all-pops 656 chr1 9360207 9360208 rs1294035 0 - G G C/T genomic single unknown 0 0 intron exact 1 DuplicateObserved,InconsistentAlleles 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 465.000000,4543.000000,4543.000000,465.000000, 0.046426,0.453574,0.453574,0.046426, maf-5-some-pop,maf-5-all-pops 656 chr1 9362340 9362341 rs9662290 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9364633 9364634 rs1294028 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1605.000000,3403.000000,3403.000000,1605.000000, 0.160244,0.339756,0.339756,0.160244, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9368135 9368136 rs17377443 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,genotype-conflict 656 chr1 9368208 9368209 rs1294040 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3217.000000,1791.000000,1791.000000,3217.000000, 0.321186,0.178814,0.178814,0.321186, maf-5-some-pop,maf-5-all-pops 656 chr1 9370382 9370383 rs1294054 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_SNP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 304.000000,4704.000000,4704.000000,304.000000, 0.030351,0.469649,0.469649,0.030351, maf-5-some-pop 656 chr1 9370910 9370911 rs630075 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2526.000000,2482.000000,2482.000000,2526.000000, 0.252196,0.247804,0.247804,0.252196, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9375308 9375309 rs9726646 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3332.000000,1676.000000, 0.665335,0.334665, maf-5-some-pop,maf-5-all-pops 656 chr1 9380245 9380246 rs12077625 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop 656 chr1 9381481 9381482 rs17377597 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 656 chr1 9382033 9382034 rs1294055 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 516.000000,4492.000000,4492.000000,516.000000, 0.051518,0.448482,0.448482,0.051518, maf-5-some-pop 656 chr1 9382284 9382285 rs564709 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4266.000000,742.000000,742.000000,4266.000000, 0.425919,0.074081,0.074081,0.425919, maf-5-some-pop 656 chr1 9382468 9382469 rs9660159 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 472.000000,4536.000000, 0.094249,0.905751, maf-5-some-pop,genotype-conflict 656 chr1 9387310 9387311 rs4908842 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2057.000000,2951.000000, 0.410743,0.589257, maf-5-some-pop,maf-5-all-pops 656 chr1 9387358 9387359 rs4908843 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops 656 chr1 9387443 9387444 rs1569422 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4230.000000,778.000000,778.000000,4230.000000, 0.422324,0.077676,0.077676,0.422324, maf-5-some-pop,maf-5-all-pops 656 chr1 9388077 9388078 rs11590191 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 656 chr1 9388653 9388654 rs9651158 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,genotype-conflict 656 chr1 9389217 9389218 rs732591 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3570.000000,1438.000000,1438.000000,3570.000000, 0.356430,0.143570,0.143570,0.356430, maf-5-some-pop,maf-5-all-pops 656 chr1 9392087 9392088 rs1294023 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1043.000000,3965.000000,3965.000000,1043.000000, 0.104133,0.395867,0.395867,0.104133, maf-5-some-pop,maf-5-all-pops 656 chr1 9394007 9394008 rs926247 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1434.000000,3574.000000,3574.000000,1434.000000, 0.143171,0.356829,0.356829,0.143171, maf-5-some-pop 656 chr1 9402402 9402403 rs478103 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop 656 chr1 9404692 9404693 rs41526651 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 4824.000000,184.000000,184.000000,4824.000000, 0.481629,0.018371,0.018371,0.481629, maf-5-some-pop 656 chr1 9405016 9405017 rs544264 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 630.000000,4378.000000,4378.000000,630.000000, 0.062899,0.437101,0.437101,0.062899, maf-5-some-pop 656 chr1 9406978 9406979 rs2075972 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3373.000000,1635.000000,1635.000000,3373.000000, 0.336761,0.163239,0.163239,0.336761, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9408958 9408959 rs11121380 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop,microattr-tpa 656 chr1 9411468 9411469 rs11121382 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,microattr-tpa,genotype-conflict 656 chr1 9415008 9415009 rs733893 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3703.000000,1305.000000,1305.000000,3703.000000, 0.369708,0.130292,0.130292,0.369708, maf-5-some-pop,maf-5-all-pops 656 chr1 9416851 9416852 rs12760778 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9416961 9416962 rs4908852 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2313.000000,2695.000000, 0.461861,0.538139, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9417945 9417946 rs9435244 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 706.000000,4302.000000, 0.140974,0.859026, maf-5-some-pop,genotype-conflict 656 chr1 9419289 9419290 rs9435245 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 656 chr1 9419321 9419322 rs11121387 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 656 chr1 9420540 9420541 rs4908854 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop 656 chr1 9422434 9422435 rs11121389 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop 656 chr1 9422874 9422875 rs552230 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1568.000000,3440.000000,3440.000000,1568.000000, 0.156550,0.343450,0.343450,0.156550, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9422976 9422977 rs553161 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 809.000000,4199.000000,4199.000000,809.000000, 0.080771,0.419229,0.419229,0.080771, maf-5-some-pop 656 chr1 9425539 9425540 rs10864411 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3087.000000,1921.000000, 0.616414,0.383586, maf-5-some-pop,maf-5-all-pops 656 chr1 9427795 9427796 rs11121390 0 + G G A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic,InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop,maf-5-all-pops 656 chr1 9427841 9427842 rs2275458 0 - A A C/T genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SEQUENOM,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3238.000000,1770.000000,1770.000000,3238.000000, 0.323283,0.176717,0.176717,0.323283, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9432161 9432162 rs9660866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 656 chr1 9432389 9432390 rs9308447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,maf-5-all-pops,microattr-tpa 656 chr1 9432910 9432911 rs17393334 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops,genotype-conflict 656 chr1 9436537 9436538 rs4596926 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2155.000000,2853.000000, 0.430312,0.569688, maf-5-some-pop,maf-5-all-pops 657 chr1 9438539 9438540 rs17393468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop 657 chr1 9441039 9441040 rs9729149 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2938.000000,2070.000000, 0.586661,0.413339, maf-5-some-pop,maf-5-all-pops 657 chr1 9441105 9441106 rs12077805 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 657 chr1 9441163 9441164 rs2311018 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 441.000000,4567.000000,4567.000000,441.000000, 0.044030,0.455970,0.455970,0.044030, maf-5-some-pop 657 chr1 9454066 9454067 rs12137140 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3683.000000,1325.000000, 0.735423,0.264577, maf-5-some-pop,maf-5-all-pops 657 chr1 9466291 9466292 rs11121406 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1767.000000,3241.000000, 0.352835,0.647165, maf-5-some-pop,maf-5-all-pops 657 chr1 9466802 9466803 rs12044809 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop 657 chr1 9483387 9483388 rs12145857 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 595.000000,4413.000000, 0.118810,0.881190, maf-5-some-pop 657 chr1 9489405 9489406 rs12405873 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 657 chr1 9489971 9489972 rs10864418 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3343.000000,1665.000000, 0.667532,0.332468, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9490338 9490339 rs11121412 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2713.000000,2295.000000, 0.541733,0.458267, maf-5-some-pop,maf-5-all-pops 657 chr1 9495586 9495587 rs9726405 0 + T T C/T genomic single unknown 0 0 unknown exact 1 MixedObserved 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 657 chr1 9498112 9498113 rs9660890 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9499245 9499246 rs9787285 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop,genotype-conflict 657 chr1 9500639 9500640 rs9662275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop,maf-5-all-pops 657 chr1 9501491 9501492 rs9662546 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop,maf-5-all-pops 657 chr1 9502484 9502485 rs11121421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 657 chr1 9506274 9506275 rs9661728 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops 657 chr1 9507003 9507004 rs10735516 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9508954 9508955 rs12034064 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 978.000000,4030.000000, 0.195288,0.804712, maf-5-some-pop,genotype-conflict 657 chr1 9509781 9509782 rs10779725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1569.000000,3439.000000, 0.313299,0.686701, maf-5-some-pop,maf-5-all-pops 657 chr1 9509820 9509821 rs10779726 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 657 chr1 9526978 9526979 rs10864425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2230.000000,2778.000000, 0.445288,0.554712, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9538653 9538654 rs12561781 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 2459.000000,2549.000000, 0.491014,0.508986, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9546954 9546955 rs12062430 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 657 chr1 9549327 9549328 rs12735814 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop 657 chr1 9556060 9556061 rs7413464 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3396.000000,1612.000000, 0.678115,0.321885, maf-5-some-pop,maf-5-all-pops,genotype-conflict 657 chr1 9559062 9559063 rs7415831 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1253.000000,3755.000000, 0.250200,0.749800, maf-5-some-pop,maf-5-all-pops 657 chr1 9565399 9565400 rs7539774 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 658 chr1 9571421 9571422 rs7542011 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop,genotype-conflict 658 chr1 9580650 9580651 rs12076872 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop 658 chr1 9589412 9589413 rs7521288 0 + C C C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassTriAllelic,InconsistentAlleles 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 658 chr1 9613870 9613871 rs6664362 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 658 chr1 9624284 9624285 rs9430274 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3456.000000,1552.000000, 0.690096,0.309904, maf-5-some-pop,maf-5-all-pops,genotype-conflict 658 chr1 9637590 9637591 rs9430155 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop,genotype-conflict 658 chr1 9647136 9647137 rs9430174 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, maf-5-some-pop,maf-5-all-pops 658 chr1 9650570 9650571 rs6669846 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,genotype-conflict 658 chr1 9654196 9654197 rs7544083 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop,maf-5-all-pops 658 chr1 9655794 9655795 rs4073710 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 723.000000,4285.000000, 0.144369,0.855631, maf-5-some-pop,genotype-conflict 658 chr1 9656446 9656447 rs4074745 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 139.000000,4869.000000,4869.000000,139.000000, 0.013878,0.486122,0.486122,0.013878, maf-5-some-pop 658 chr1 9656570 9656571 rs4074744 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 4 A,C,G,T, 3408.000000,1600.000000,1600.000000,3408.000000, 0.340256,0.159744,0.159744,0.340256, maf-5-some-pop,maf-5-all-pops 658 chr1 9673045 9673046 rs11799995 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 658 chr1 9677001 9677002 rs6540967 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 893.000000,4115.000000, 0.178315,0.821685, maf-5-some-pop,maf-5-all-pops 658 chr1 9677852 9677853 rs10779727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3563.000000,1445.000000, 0.711462,0.288538, maf-5-some-pop,maf-5-all-pops,genotype-conflict 658 chr1 9698261 9698262 rs11121466 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop,maf-5-all-pops 658 chr1 9698332 9698333 rs11121467 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1828.000000,3180.000000, 0.365016,0.634984, maf-5-some-pop,maf-5-all-pops 659 chr1 9699376 9699377 rs9430544 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2974.000000,2034.000000, 0.593850,0.406150, maf-5-some-pop,maf-5-all-pops 659 chr1 9699767 9699768 rs12028233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2041.000000,2967.000000, 0.407548,0.592452, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9713499 9713500 rs4240896 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3396.000000,1612.000000, 0.678115,0.321885, maf-5-some-pop,maf-5-all-pops 659 chr1 9722522 9722523 rs6666059 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,G, 1668.000000,3340.000000, 0.333067,0.666933, maf-5-some-pop,maf-5-all-pops 659 chr1 9725524 9725525 rs4300218 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 409.000000,4599.000000, 0.081669,0.918331, maf-5-some-pop 659 chr1 9731336 9731337 rs12730387 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 659 chr1 9732865 9732866 rs12092982 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop 659 chr1 9732910 9732911 rs11802023 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop 659 chr1 9733220 9733221 rs11121472 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2142.000000,2866.000000, 0.427716,0.572284, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9738785 9738786 rs9430635 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 659 chr1 9738878 9738879 rs4846189 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 659 chr1 9750456 9750457 rs4240910 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2540.000000,2468.000000, 0.507188,0.492812, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9755272 9755273 rs11801864 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 659 chr1 9771563 9771564 rs6541017 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop 659 chr1 9782555 9782556 rs11589267 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA, 2 C,T, 4179.000000,829.000000, 0.834465,0.165535, maf-5-some-pop 659 chr1 9784422 9784423 rs11121484 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WIPGA, 2 C,T, 3476.000000,1532.000000, 0.694089,0.305911, maf-5-some-pop,maf-5-all-pops,genotype-conflict 659 chr1 9794304 9794305 rs12568720 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3470.000000,1538.000000, 0.692891,0.307109, maf-5-some-pop 659 chr1 9801340 9801341 rs10864436 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 947.000000,4061.000000, 0.189097,0.810903, maf-5-some-pop,maf-5-all-pops 659 chr1 9811434 9811435 rs10779731 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3458.000000,1550.000000, 0.690495,0.309505, maf-5-some-pop,maf-5-all-pops 660 chr1 9832931 9832932 rs12034109 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BGI,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop 660 chr1 9881111 9881112 rs1619083 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 166.000000,4842.000000,4842.000000,166.000000, 0.016573,0.483427,0.483427,0.016573, maf-5-some-pop 660 chr1 9897000 9897001 rs12032209 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3834.000000,1174.000000, 0.765575,0.234425, maf-5-some-pop,maf-5-all-pops 660 chr1 9902127 9902128 rs1933734 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop,maf-5-all-pops,genotype-conflict 660 chr1 9902899 9902900 rs10864439 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2183.000000,2825.000000, 0.435903,0.564097, maf-5-some-pop,maf-5-all-pops,genotype-conflict 660 chr1 9908481 9908482 rs15177 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BGI,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop,genotype-conflict 660 chr1 9923740 9923741 rs935073 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3223.000000,1785.000000, 0.643570,0.356430, maf-5-some-pop,maf-5-all-pops 660 chr1 9924944 9924945 rs3860318 0 + A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 660 chr1 9926019 9926020 rs7537879 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop,genotype-conflict 660 chr1 9926228 9926229 rs1220412 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1942.000000,3066.000000, 0.387780,0.612220, maf-5-some-pop,maf-5-all-pops 660 chr1 9930959 9930960 rs7541300 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop 660 chr1 9937040 9937041 rs12128766 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4116.000000,892.000000, 0.821885,0.178115, maf-5-some-pop 660 chr1 9937588 9937589 rs7549820 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 660 chr1 9940892 9940893 rs4417070 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,T, 701.000000,4307.000000, 0.139976,0.860024, maf-5-some-pop,maf-5-all-pops 660 chr1 9941035 9941036 rs4636465 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop 660 chr1 9950139 9950140 rs946276 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 271.000000,4737.000000,4737.000000,271.000000, 0.027057,0.472943,0.472943,0.027057, maf-5-some-pop,genotype-conflict 661 chr1 9973927 9973928 rs1220388 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 661 chr1 9984878 9984879 rs12097182 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4511.000000,497.000000, 0.900759,0.099241, maf-5-some-pop 661 chr1 9994338 9994339 rs1220398 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1740.000000,3268.000000, 0.347444,0.652556, maf-5-some-pop,maf-5-all-pops 661 chr1 9994844 9994845 rs2304778 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,AFFY,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,YUSUKE, 2 C,T, 5000.000000,8.000000, 0.998403,0.001597, genotype-conflict 661 chr1 10003319 10003320 rs1234694 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2675.000000,2333.000000, 0.534145,0.465855, maf-5-some-pop,maf-5-all-pops 661 chr1 10013013 10013014 rs7516611 0 + A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4128.000000,880.000000, 0.824281,0.175719, maf-5-some-pop,maf-5-all-pops,genotype-conflict 661 chr1 10023194 10023195 rs12071307 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 739.000000,4269.000000, 0.147564,0.852436, maf-5-some-pop 661 chr1 10023292 10023293 rs6541073 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2813.000000,2195.000000, 0.561701,0.438299, maf-5-some-pop,maf-5-all-pops 661 chr1 10027539 10027540 rs2890358 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2658.000000,2350.000000, 0.530751,0.469249, maf-5-some-pop,maf-5-all-pops 661 chr1 10029912 10029913 rs6683452 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1381.000000,3627.000000, 0.275759,0.724241, maf-5-some-pop,maf-5-all-pops 661 chr1 10031305 10031306 rs11121507 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4756.000000,252.000000, 0.949681,0.050319, maf-5-some-pop 661 chr1 10049176 10049177 rs12140058 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops 661 chr1 10068174 10068175 rs11578833 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 662 chr1 10106774 10106775 rs12406448 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop 662 chr1 10134225 10134226 rs17034493 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 662 chr1 10134526 10134527 rs7538285 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 662 chr1 10155282 10155283 rs9430244 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 760.000000,4248.000000, 0.151757,0.848243, maf-5-some-pop,maf-5-all-pops,genotype-conflict 662 chr1 10165300 10165301 rs12076922 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops,genotype-conflict 662 chr1 10195969 10195970 rs6685910 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,T, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop 662 chr1 10197611 10197612 rs6687550 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 662 chr1 10209418 10209419 rs12076005 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 662 chr1 10209556 10209557 rs6696978 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 A,G, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop 662 chr1 10218376 10218377 rs2273298 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3180.000000,1828.000000, 0.634984,0.365016, maf-5-some-pop 662 chr1 10218438 10218439 rs2273299 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 26 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 1832.000000,3176.000000, 0.365815,0.634185, maf-5-some-pop,maf-5-all-pops 662 chr1 10223004 10223005 rs17034544 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop,maf-5-all-pops 663 chr1 10224692 10224693 rs17034545 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop 663 chr1 10228527 10228528 rs17034558 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop 663 chr1 10229157 10229158 rs17034560 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1082.000000,3926.000000, 0.216054,0.783946, maf-5-some-pop 663 chr1 10231462 10231463 rs12092513 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3720.000000,1288.000000, 0.742812,0.257188, maf-5-some-pop,maf-5-all-pops,microattr-tpa 663 chr1 10232123 10232124 rs9782938 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,G, 484.000000,4524.000000, 0.096645,0.903355, maf-5-some-pop 663 chr1 10232199 10232200 rs17034569 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,genotype-conflict 663 chr1 10232533 10232534 rs11121524 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,genotype-conflict 663 chr1 10236038 10236039 rs6541080 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2396.000000,2612.000000, 0.478435,0.521565, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10236401 10236402 rs7418410 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10244271 10244272 rs11806619 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 663 chr1 10246128 10246129 rs2180185 0 - G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 663 chr1 10249962 10249963 rs7522819 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 663 chr1 10281683 10281684 rs6671413 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 663 chr1 10282185 10282186 rs4846198 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1981.000000,3027.000000, 0.395567,0.604433, maf-5-some-pop,genotype-conflict 663 chr1 10296517 10296518 rs12069853 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 663 chr1 10307452 10307453 rs4240911 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1698.000000,3310.000000, 0.339058,0.660942, maf-5-some-pop,maf-5-all-pops 663 chr1 10308630 10308631 rs946503 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 663 chr1 10309579 10309580 rs946501 0 - G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 663 chr1 10311876 10311877 rs17034615 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop 663 chr1 10311982 10311983 rs12407992 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops 663 chr1 10326183 10326184 rs12064209 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,G, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 663 chr1 10326962 10326963 rs9332414 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3387.000000,1621.000000, 0.676318,0.323682, maf-5-some-pop,maf-5-all-pops 663 chr1 10332101 10332102 rs17034643 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3347.000000,1661.000000, 0.668331,0.331669, maf-5-some-pop,maf-5-all-pops 663 chr1 10341994 10341995 rs17034655 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 663 chr1 10342168 10342169 rs6541088 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,ILLUMINA,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 663 chr1 10345324 10345325 rs12120042 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops 663 chr1 10345461 10345462 rs17397129 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4515.000000,493.000000, 0.901558,0.098443, maf-5-some-pop,genotype-conflict 663 chr1 10345771 10345772 rs12120191 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1642.000000,3366.000000, 0.327875,0.672125, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10346809 10346810 rs746881 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3385.000000,1623.000000, 0.675919,0.324081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 663 chr1 10348711 10348712 rs912962 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2323.000000,2685.000000,2685.000000,2323.000000, 0.231929,0.268071,0.268071,0.231929, maf-5-some-pop,maf-5-all-pops 663 chr1 10353111 10353112 rs10492972 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1629.000000,3379.000000, 0.325280,0.674720, clinically-assoc,maf-5-some-pop,has-omim-omia,microattr-tpa 664 chr1 10357405 10357406 rs3748577 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 664 chr1 10385470 10385471 rs17401966 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3843.000000,1165.000000, 0.767372,0.232628, clinically-assoc,maf-5-some-pop,has-omim-omia,microattr-tpa 664 chr1 10386641 10386642 rs17034735 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 664 chr1 10386881 10386882 rs17034738 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,genotype-conflict 664 chr1 10387703 10387704 rs4333852 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops 664 chr1 10387787 10387788 rs4475756 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3260.000000,1748.000000, 0.650958,0.349042, maf-5-some-pop,maf-5-all-pops 664 chr1 10391535 10391536 rs12734551 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1194.000000,3814.000000, 0.238419,0.761581, maf-5-some-pop,maf-5-all-pops 664 chr1 10397898 10397899 rs17034762 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 664 chr1 10400601 10400602 rs1555849 0 - A A G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3337.000000,1671.000000,1671.000000,3337.000000, 0.333167,0.166833,0.166833,0.333167, maf-5-some-pop,maf-5-all-pops 664 chr1 10400989 10400990 rs1556917 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1704.000000,3304.000000,3304.000000,1704.000000, 0.170128,0.329872,0.329872,0.170128, maf-5-some-pop,maf-5-all-pops 664 chr1 10404182 10404183 rs11121543 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 G,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,genotype-conflict 664 chr1 10413122 10413123 rs1467653 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, 4 A,C,G,T, 2634.000000,2374.000000,2374.000000,2634.000000, 0.262979,0.237021,0.237021,0.262979, maf-5-some-pop,maf-5-all-pops,genotype-conflict 664 chr1 10420917 10420918 rs3748578 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1457.000000,3551.000000, 0.290935,0.709065, maf-5-some-pop,maf-5-all-pops,genotype-conflict 664 chr1 10421877 10421878 rs12125492 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 664 chr1 10447791 10447792 rs4846216 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 664 chr1 10454501 10454502 rs6679596 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop 664 chr1 10454772 10454773 rs6682868 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2637.000000,2371.000000, 0.526558,0.473442, maf-5-some-pop,maf-5-all-pops 664 chr1 10458377 10458378 rs6674843 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop,maf-5-all-pops 664 chr1 10458438 10458439 rs6670157 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4327.000000,681.000000, 0.864018,0.135982, maf-5-some-pop 664 chr1 10484415 10484416 rs663364 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop,maf-5-all-pops 664 chr1 10485018 10485019 rs2483679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2503.000000,2505.000000, 0.499800,0.500200, maf-5-some-pop,maf-5-all-pops 665 chr1 10488313 10488314 rs505141 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2131.000000,2877.000000, 0.425519,0.574481, maf-5-some-pop,maf-5-all-pops 665 chr1 10488554 10488555 rs528713 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1981.000000,3027.000000, 0.395567,0.604433, maf-5-some-pop,maf-5-all-pops 665 chr1 10493414 10493415 rs597441 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2654.000000,2354.000000, 0.529952,0.470048, maf-5-some-pop,maf-5-all-pops 665 chr1 10502709 10502710 rs2847337 0 - A A C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 4 A,C,G,T, 898.000000,4110.000000,4110.000000,898.000000, 0.089657,0.410343,0.410343,0.089657, maf-5-some-pop 665 chr1 10508135 10508136 rs3828044 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 665 chr1 10509702 10509703 rs1307494 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 895.000000,4113.000000, 0.178714,0.821286, maf-5-some-pop 665 chr1 10521398 10521399 rs3829642 0 - C C A/G genomic single unknown 0 0 untranslated-3 exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,YUSUKE, 4 A,C,G,T, 40.000000,4968.000000,4968.000000,40.000000, 0.003994,0.496006,0.496006,0.003994, maf-5-some-pop 665 chr1 10532980 10532981 rs11588734 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop 665 chr1 10537089 10537090 rs684016 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2959.000000,2049.000000,2049.000000,2959.000000, 0.295427,0.204573,0.204573,0.295427, maf-5-some-pop,maf-5-all-pops 665 chr1 10543835 10543836 rs9970001 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 665 chr1 10544546 10544547 rs668805 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops 665 chr1 10544724 10544725 rs669701 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 665 chr1 10544987 10544988 rs12565133 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,C, 1845.000000,3163.000000, 0.368411,0.631589, maf-5-some-pop,maf-5-all-pops 665 chr1 10549379 10549380 rs670666 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3185.000000,1823.000000, 0.635982,0.364018, maf-5-some-pop,maf-5-all-pops 665 chr1 10549627 10549628 rs585870 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 3772.000000,1236.000000,1236.000000,3772.000000, 0.376597,0.123403,0.123403,0.376597, maf-5-some-pop,maf-5-all-pops 665 chr1 10558209 10558210 rs647281 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 4 A,C,G,T, 634.000000,4374.000000,4374.000000,634.000000, 0.063299,0.436701,0.436701,0.063299, maf-5-some-pop 665 chr1 10563608 10563609 rs10864459 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 665 chr1 10563670 10563671 rs10864460 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops 665 chr1 10563680 10563681 rs2506902 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3800.000000,1208.000000, 0.758786,0.241214, maf-5-some-pop,maf-5-all-pops 665 chr1 10566147 10566148 rs7543322 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops 665 chr1 10566271 10566272 rs616402 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1479.000000,3529.000000,3529.000000,1479.000000, 0.147664,0.352336,0.352336,0.147664, maf-5-some-pop,maf-5-all-pops 665 chr1 10571840 10571841 rs6540935 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop 665 chr1 10573303 10573304 rs17035111 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 665 chr1 10580890 10580891 rs2483677 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3933.000000,1075.000000, 0.785343,0.214657, maf-5-some-pop 665 chr1 10582046 10582047 rs2483678 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3873.000000,1135.000000, 0.773363,0.226637, maf-5-some-pop,maf-5-all-pops 665 chr1 10582126 10582127 rs12057729 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4367.000000,641.000000, 0.872005,0.127995, maf-5-some-pop 665 chr1 10585526 10585527 rs17035156 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,maf-5-all-pops 665 chr1 10589835 10589836 rs7548453 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3095.000000,1913.000000, 0.618011,0.381989, maf-5-some-pop,maf-5-all-pops 665 chr1 10591103 10591104 rs12090079 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop,genotype-conflict 665 chr1 10593295 10593296 rs2480782 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 12 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 4 A,C,G,T, 470.000000,4538.000000,4538.000000,470.000000, 0.046925,0.453075,0.453075,0.046925, maf-5-some-pop,genotype-conflict 665 chr1 10596529 10596530 rs2480778 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 316.000000,4692.000000,4692.000000,316.000000, 0.031550,0.468450,0.468450,0.031550, maf-5-some-pop,genotype-conflict 665 chr1 10597052 10597053 rs2506891 0 + T T G/T genomic single unknown 0 0 intron exact 1 MixedObserved 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 665 chr1 10597550 10597551 rs2480777 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1147.000000,3861.000000,3861.000000,1147.000000, 0.114517,0.385483,0.385483,0.114517, maf-5-some-pop 665 chr1 10599562 10599563 rs17035212 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 665 chr1 10603715 10603716 rs2506896 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1385.000000,3623.000000, 0.276558,0.723442, maf-5-some-pop,maf-5-all-pops 665 chr1 10604538 10604539 rs2506898 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3164.000000,1844.000000, 0.631789,0.368211, maf-5-some-pop,maf-5-all-pops 665 chr1 10606995 10606996 rs2480775 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 3246.000000,1762.000000,1762.000000,3246.000000, 0.324081,0.175919,0.175919,0.324081, maf-5-some-pop,maf-5-all-pops,microattr-tpa 665 chr1 10607227 10607228 rs2480774 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 4786.000000,222.000000,222.000000,4786.000000, 0.477835,0.022165,0.022165,0.477835, maf-5-some-pop,genotype-conflict 665 chr1 10607450 10607451 rs944191 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 3771.000000,1237.000000,1237.000000,3771.000000, 0.376498,0.123502,0.123502,0.376498, maf-5-some-pop,maf-5-all-pops 665 chr1 10607894 10607895 rs11121582 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop,maf-5-all-pops,genotype-conflict 665 chr1 10608397 10608398 rs11121583 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop,genotype-conflict 665 chr1 10608595 10608596 rs4846230 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 665 chr1 10609089 10609090 rs2480773 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3360.000000,1648.000000,1648.000000,3360.000000, 0.335463,0.164537,0.164537,0.335463, maf-5-some-pop,maf-5-all-pops,genotype-conflict 665 chr1 10610697 10610698 rs1411400 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 7 1000GENOMES,ABI,AFFY,KRIBB_YJKIM,PERLEGEN,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4946.000000,62.000000,62.000000,4946.000000, 0.493810,0.006190,0.006190,0.493810, maf-5-some-pop,maf-5-all-pops,genotype-conflict 665 chr1 10611402 10611403 rs6688558 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1589.000000,3419.000000, 0.317292,0.682708, maf-5-some-pop,genotype-conflict 665 chr1 10613166 10613167 rs7555790 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1584.000000,3424.000000, 0.316294,0.683706, maf-5-some-pop,maf-5-all-pops 665 chr1 10613559 10613560 rs10864463 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1654.000000,3354.000000, 0.330272,0.669728, maf-5-some-pop,maf-5-all-pops,microattr-tpa 665 chr1 10616483 10616484 rs4240915 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 666 chr1 10617033 10617034 rs12028449 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1127.000000,3881.000000, 0.225040,0.774960, maf-5-some-pop,genotype-conflict 666 chr1 10617190 10617191 rs17035313 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,genotype-conflict 666 chr1 10617271 10617272 rs9660006 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1653.000000,3355.000000, 0.330072,0.669928, maf-5-some-pop,maf-5-all-pops 666 chr1 10622373 10622374 rs7512467 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4113.000000,895.000000, 0.821286,0.178714, maf-5-some-pop 666 chr1 10626921 10626922 rs11121594 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2957.000000,2051.000000, 0.590455,0.409545, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10627541 10627542 rs12033275 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4037.000000,971.000000, 0.806110,0.193890, maf-5-some-pop 666 chr1 10633244 10633245 rs6687430 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2644.000000,2364.000000, 0.527955,0.472045, maf-5-some-pop,maf-5-all-pops 666 chr1 10633272 10633273 rs6687502 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2956.000000,2052.000000, 0.590256,0.409744, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10643828 10643829 rs12045923 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2442.000000,2566.000000, 0.487620,0.512380, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10648804 10648805 rs10864467 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 666 chr1 10649222 10649223 rs12090714 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop,genotype-conflict 666 chr1 10650343 10650344 rs11577757 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop 666 chr1 10650381 10650382 rs2387144 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 666 chr1 10650508 10650509 rs2387145 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 666 chr1 10652604 10652605 rs6668131 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop 666 chr1 10655935 10655936 rs284269 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 4582.000000,426.000000,426.000000,4582.000000, 0.457468,0.042532,0.042532,0.457468, maf-5-some-pop 666 chr1 10656323 10656324 rs284268 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 716.000000,4292.000000,4292.000000,716.000000, 0.071486,0.428514,0.428514,0.071486, maf-5-some-pop 666 chr1 10656334 10656335 rs6657808 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 666 chr1 10656350 10656351 rs284267 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1267.000000,3741.000000,3741.000000,1267.000000, 0.126498,0.373502,0.373502,0.126498, maf-5-some-pop,maf-5-all-pops 666 chr1 10657911 10657912 rs17035414 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10662877 10662878 rs6684576 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,SC_SNP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop 666 chr1 10669097 10669098 rs6666075 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2012.000000,2996.000000, 0.401757,0.598243, maf-5-some-pop,maf-5-all-pops 666 chr1 10676799 10676800 rs284239 0 - G G A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,KRIBB_YJKIM,KWOK,SC_JCM, 4 A,C,G,T, 194.000000,4814.000000,4814.000000,194.000000, 0.019369,0.480631,0.480631,0.019369, maf-5-some-pop 666 chr1 10687725 10687726 rs185864 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops,genotype-conflict 666 chr1 10694039 10694040 rs17035493 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop 666 chr1 10694124 10694125 rs284301 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 894.000000,4114.000000,4114.000000,894.000000, 0.089257,0.410743,0.410743,0.089257, maf-5-some-pop 666 chr1 10704069 10704070 rs284246 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,TSC-CSHL, 4 A,C,G,T, 4816.000000,192.000000,192.000000,4816.000000, 0.480831,0.019169,0.019169,0.480831, maf-5-some-pop 666 chr1 10707811 10707812 rs3790638 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 666 chr1 10719565 10719566 rs476164 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3803.000000,1205.000000,1205.000000,3803.000000, 0.379692,0.120308,0.120308,0.379692, maf-5-some-pop,maf-5-all-pops 666 chr1 10725386 10725387 rs17035539 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 539.000000,4469.000000, 0.107628,0.892372, maf-5-some-pop 666 chr1 10726688 10726689 rs284321 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 510.000000,4498.000000,4498.000000,510.000000, 0.050919,0.449081,0.449081,0.050919, maf-5-some-pop,genotype-conflict 666 chr1 10727019 10727020 rs284320 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3478.000000,1530.000000,1530.000000,3478.000000, 0.347244,0.152756,0.152756,0.347244, maf-5-some-pop,maf-5-all-pops 666 chr1 10736433 10736434 rs284313 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2603.000000,2405.000000,2405.000000,2603.000000, 0.259884,0.240116,0.240116,0.259884, maf-5-some-pop,maf-5-all-pops 666 chr1 10739862 10739863 rs17035549 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,genotype-conflict 666 chr1 10740625 10740626 rs556506 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop 666 chr1 10740640 10740641 rs557153 0 + G G A/C/G genomic single unknown 0 0 intron exact 1 SingleClassTriAllelic 9 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 3 A,C,G, 219.000000,22.000000,4767.000000, 0.043730,0.004393,0.951877, maf-5-some-pop 666 chr1 10743748 10743749 rs284261 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,genotype-conflict 666 chr1 10747261 10747262 rs284257 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4649.000000,359.000000,359.000000,4649.000000, 0.464157,0.035843,0.035843,0.464157, maf-5-some-pop 667 chr1 10757198 10757199 rs4845948 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 667 chr1 10760509 10760510 rs734736 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1507.000000,3501.000000, 0.300919,0.699081, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10764235 10764236 rs17035599 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 667 chr1 10771487 10771488 rs710133 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop,maf-5-all-pops 667 chr1 10780726 10780727 rs706007 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3677.000000,1331.000000,1331.000000,3677.000000, 0.367113,0.132887,0.132887,0.367113, maf-5-some-pop,genotype-conflict 667 chr1 10788051 10788052 rs12057815 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10790535 10790536 rs284278 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2720.000000,2288.000000,2288.000000,2720.000000, 0.271565,0.228435,0.228435,0.271565, maf-5-some-pop,maf-5-all-pops 667 chr1 10790796 10790797 rs284277 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PAGE_STUDY,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 2048.000000,2960.000000,2960.000000,2048.000000, 0.204473,0.295527,0.295527,0.204473, maf-5-some-pop,maf-5-all-pops 667 chr1 10793410 10793411 rs6540946 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 667 chr1 10801584 10801585 rs4845843 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop,maf-5-all-pops 667 chr1 10808586 10808587 rs2076492 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop,maf-5-all-pops 667 chr1 10823773 10823774 rs11121613 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop,genotype-conflict 667 chr1 10823785 10823786 rs6540948 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2058.000000,2950.000000, 0.410942,0.589058, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10825656 10825657 rs17035678 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCMHGSC_JDW,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 667 chr1 10825685 10825686 rs17035680 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop 667 chr1 10825698 10825699 rs17035686 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop 667 chr1 10827134 10827135 rs205488 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops 667 chr1 10832860 10832861 rs205474 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10847339 10847340 rs6658023 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10848059 10848060 rs11121621 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops 667 chr1 10858745 10858746 rs718047 0 + C C A/C genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop 667 chr1 10873381 10873382 rs1769669 0 - G G C/T genomic single unknown 0 0 unknown exact 1 MixedObserved,InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1951.000000,3057.000000,3057.000000,1951.000000, 0.194788,0.305212,0.305212,0.194788, maf-5-some-pop,maf-5-all-pops 667 chr1 10874151 10874152 rs1776219 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops,genotype-conflict 667 chr1 10876599 10876600 rs6688450 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop,maf-5-all-pops 668 chr1 10880231 10880232 rs710128 0 + A A A/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1220.000000,3788.000000, 0.243610,0.756390, maf-5-some-pop,maf-5-all-pops 668 chr1 10887922 10887923 rs539790 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BL,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 316.000000,4692.000000,4692.000000,316.000000, 0.031550,0.468450,0.468450,0.031550, maf-5-some-pop,genotype-conflict 668 chr1 10890770 10890771 rs497483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2525.000000,2483.000000, 0.504193,0.495807, maf-5-some-pop,maf-5-all-pops 668 chr1 10890892 10890893 rs519391 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 668 chr1 10891338 10891339 rs2143385 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10891499 10891500 rs2840299 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1608.000000,3400.000000,3400.000000,1608.000000, 0.160543,0.339457,0.339457,0.160543, maf-5-some-pop,maf-5-all-pops 668 chr1 10891776 10891777 rs527676 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 420.000000,4588.000000,4588.000000,420.000000, 0.041933,0.458067,0.458067,0.041933, maf-5-some-pop,genotype-conflict 668 chr1 10892932 10892933 rs580547 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 3227.000000,1781.000000,1781.000000,3227.000000, 0.322185,0.177815,0.177815,0.322185, maf-5-some-pop,maf-5-all-pops 668 chr1 10893080 10893081 rs1292657 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3861.000000,1147.000000, 0.770966,0.229034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10905364 10905365 rs1292664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3915.000000,1093.000000, 0.781749,0.218251, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10906633 10906634 rs535724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 668 chr1 10907207 10907208 rs1292665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop,maf-5-all-pops 668 chr1 10907841 10907842 rs672270 0 + C C A/C genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop 668 chr1 10908411 10908412 rs1292666 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2460.000000,2548.000000, 0.491214,0.508786, maf-5-some-pop,maf-5-all-pops 668 chr1 10909592 10909593 rs515331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop 668 chr1 10917439 10917440 rs569456 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2483.000000,2525.000000, 0.495807,0.504193, maf-5-some-pop,maf-5-all-pops 668 chr1 10918757 10918758 rs622120 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,genotype-conflict 668 chr1 10929008 10929009 rs10864475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop,genotype-conflict 668 chr1 10929297 10929298 rs1281001 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1996.000000,3012.000000,3012.000000,1996.000000, 0.199281,0.300719,0.300719,0.199281, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10934298 10934299 rs12061144 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 544.000000,4464.000000, 0.108626,0.891374, maf-5-some-pop 668 chr1 10934873 10934874 rs12065037 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2162.000000,2846.000000, 0.431709,0.568291, maf-5-some-pop 668 chr1 10935422 10935423 rs1280995 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop,genotype-conflict 668 chr1 10939079 10939080 rs6686445 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4162.000000,846.000000, 0.831070,0.168930, maf-5-some-pop,maf-5-all-pops 668 chr1 10950725 10950726 rs7536814 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop 668 chr1 10951174 10951175 rs10864476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop 668 chr1 10958934 10958935 rs7522413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 668 chr1 10968729 10968730 rs10864479 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 10977101 10977102 rs6540954 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop,maf-5-all-pops 668 chr1 10983841 10983842 rs6657217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 668 chr1 10984405 10984406 rs1280985 0 - T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 668 chr1 10995478 10995479 rs1281003 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 498.000000,4510.000000,4510.000000,498.000000, 0.049720,0.450280,0.450280,0.049720, maf-5-some-pop,genotype-conflict 668 chr1 11000275 11000276 rs12755921 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1894.000000,3114.000000, 0.378195,0.621805, maf-5-some-pop,maf-5-all-pops,genotype-conflict 668 chr1 11000720 11000721 rs6664866 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2932.000000,2076.000000, 0.585463,0.414537, maf-5-some-pop 668 chr1 11002487 11002488 rs6656310 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,genotype-conflict 668 chr1 11002578 11002579 rs1281030 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 4818.000000,190.000000,190.000000,4818.000000, 0.481030,0.018970,0.018970,0.481030, maf-5-some-pop 668 chr1 11007071 11007072 rs1281020 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 4610.000000,398.000000,398.000000,4610.000000, 0.460264,0.039736,0.039736,0.460264, maf-5-some-pop 668 chr1 11009542 11009543 rs1281014 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 347.000000,4661.000000,4661.000000,347.000000, 0.034645,0.465355,0.465355,0.034645, maf-5-some-pop,genotype-conflict 668 chr1 11009678 11009679 rs1281013 0 - G G C/T genomic single unknown 0 0 intron,splice-5 exact 1 InconsistentAlleles 18 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 4 A,C,G,T, 346.000000,4662.000000,4662.000000,346.000000, 0.034545,0.465455,0.465455,0.034545, maf-5-some-pop 669 chr1 11011001 11011002 rs1281008 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 1658.000000,3350.000000,3350.000000,1658.000000, 0.165535,0.334465,0.334465,0.165535, maf-5-some-pop,maf-5-all-pops,genotype-conflict 669 chr1 11017550 11017551 rs12030940 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop 669 chr1 11018064 11018065 rs12758614 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 669 chr1 11023695 11023696 rs6667397 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2635.000000,2373.000000, 0.526158,0.473842, maf-5-some-pop,maf-5-all-pops 669 chr1 11029477 11029478 rs12085319 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2415.000000,2593.000000, 0.482228,0.517772, maf-5-some-pop 669 chr1 11034816 11034817 rs9659356 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 669 chr1 11038475 11038476 rs11121667 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3087.000000,1921.000000, 0.616414,0.383586, maf-5-some-pop,maf-5-all-pops,genotype-conflict 669 chr1 11038603 11038604 rs11121668 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,genotype-conflict 669 chr1 11042241 11042242 rs11121670 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 669 chr1 11049253 11049254 rs12068532 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 669 chr1 11060074 11060075 rs11121675 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop 669 chr1 11060798 11060799 rs7517230 0 + A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop,genotype-conflict 669 chr1 11063042 11063043 rs11121676 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2934.000000,2074.000000, 0.585863,0.414137, maf-5-some-pop,maf-5-all-pops 669 chr1 11072578 11072579 rs968545 0 - T T A/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 InconsistentAlleles 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 150.000000,4858.000000,4858.000000,150.000000, 0.014976,0.485024,0.485024,0.014976, maf-5-some-pop,genotype-conflict 669 chr1 11074249 11074250 rs3765895 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 774.000000,4234.000000, 0.154553,0.845447, maf-5-some-pop,maf-5-all-pops,genotype-conflict 669 chr1 11074581 11074582 rs3765897 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 669 chr1 11086331 11086332 rs2273347 0 - A A C/T genomic single unknown 0 0 near-gene-3 exact 1 InconsistentAlleles 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SEQUENOM,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2072.000000,2936.000000,2936.000000,2072.000000, 0.206869,0.293131,0.293131,0.206869, maf-5-some-pop,maf-5-all-pops 669 chr1 11093740 11093741 rs7556039 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 706.000000,4302.000000, 0.140974,0.859026, maf-5-some-pop,maf-5-all-pops 669 chr1 11095038 11095039 rs6695096 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 789.000000,4219.000000, 0.157548,0.842452, maf-5-some-pop,maf-5-all-pops 669 chr1 11128653 11128654 rs2791655 0 - G G C/T genomic single unknown 0 0 intron,ncRNA exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2956.000000,2052.000000,2052.000000,2956.000000, 0.295128,0.204872,0.204872,0.295128, maf-5-some-pop,maf-5-all-pops 669 chr1 11129258 11129259 rs1194820 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 2319.000000,2689.000000,2689.000000,2319.000000, 0.231530,0.268470,0.268470,0.231530, maf-5-some-pop 669 chr1 11130642 11130643 rs910660 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 1973.000000,3035.000000,3035.000000,1973.000000, 0.196985,0.303015,0.303015,0.196985, maf-5-some-pop,maf-5-all-pops 669 chr1 11134837 11134838 rs12118762 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop,maf-5-all-pops 669 chr1 11140442 11140443 rs12072693 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 670 chr1 11151313 11151314 rs2273336 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 4405.000000,603.000000,603.000000,4405.000000, 0.439796,0.060204,0.060204,0.439796, maf-5-some-pop 670 chr1 11181846 11181847 rs11121692 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 670 chr1 11181984 11181985 rs41274510 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,AFFY_GWHS,CLINSEQ_SNP,EVA-GONL,ILLUMINA,NHLBI-ESP,SI_EXO,SSMP, 2 A,G, 48.000000,4960.000000, 0.009585,0.990415, 670 chr1 11186896 11186897 rs3737611 0 - A A C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 4143.000000,865.000000,865.000000,4143.000000, 0.413638,0.086362,0.086362,0.413638, maf-5-some-pop 670 chr1 11188855 11188856 rs17036377 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 670 chr1 11189076 11189077 rs3730380 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 4736.000000,272.000000,272.000000,4736.000000, 0.472843,0.027157,0.027157,0.472843, maf-5-some-pop 670 chr1 11190645 11190646 rs2275527 0 - G G C/T genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 InconsistentAlleles 23 1000GENOMES,AFFY,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 1145.000000,3863.000000,3863.000000,1145.000000, 0.114317,0.385683,0.385683,0.114317, maf-5-some-pop,maf-5-all-pops 670 chr1 11191231 11191232 rs12732063 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop 670 chr1 11194590 11194591 rs3730381 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 15 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 487.000000,4521.000000,4521.000000,487.000000, 0.048622,0.451378,0.451378,0.048622, maf-5-some-pop 670 chr1 11199148 11199149 rs2275528 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 4522.000000,486.000000,486.000000,4522.000000, 0.451478,0.048522,0.048522,0.451478, maf-5-some-pop 670 chr1 11205057 11205058 rs1057079 0 - C C A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 InconsistentAlleles 34 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,KWOK,LEE,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA,YUSUKE, 4 A,C,G,T, 2742.000000,2266.000000,2266.000000,2742.000000, 0.273762,0.226238,0.226238,0.273762, maf-5-some-pop 670 chr1 11206622 11206623 rs3730384 0 - G G C/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 6 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,WIPGA, 4 A,C,G,T, 121.000000,4887.000000,4887.000000,121.000000, 0.012081,0.487919,0.487919,0.012081, maf-5-some-pop 670 chr1 11206689 11206690 rs2275942 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BGI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF,WIPGA,YUSUKE, 2 A,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 670 chr1 11210103 11210104 rs3730385 0 - C C A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 274.000000,4734.000000,4734.000000,274.000000, 0.027356,0.472644,0.472644,0.027356, maf-5-some-pop 670 chr1 11215995 11215996 rs17036421 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop,genotype-conflict 670 chr1 11216664 11216665 rs4282823 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop,maf-5-all-pops 670 chr1 11222392 11222393 rs7553827 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1331.000000,3677.000000, 0.265775,0.734225, maf-5-some-pop,maf-5-all-pops 670 chr1 11236409 11236410 rs10864490 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1428.000000,3580.000000, 0.285144,0.714856, maf-5-some-pop 670 chr1 11238062 11238063 rs11121696 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops 670 chr1 11238415 11238416 rs17036458 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop 670 chr1 11241942 11241943 rs12121866 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 670 chr1 11244488 11244489 rs12118640 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,genotype-conflict 670 chr1 11248019 11248020 rs12122605 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4128.000000,880.000000, 0.824281,0.175719, maf-5-some-pop 670 chr1 11248236 11248237 rs12122678 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 670 chr1 11249131 11249132 rs1034528 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,AFFY,BGI,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 1448.000000,3560.000000, 0.289137,0.710863, maf-5-some-pop,maf-5-all-pops 670 chr1 11255430 11255431 rs12124598 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 14 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 670 chr1 11269795 11269796 rs1010447 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 3487.000000,1521.000000, 0.696286,0.303714, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11278162 11278163 rs7526649 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1572.000000,3436.000000, 0.313898,0.686102, maf-5-some-pop,maf-5-all-pops 671 chr1 11278812 11278813 rs7549109 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2717.000000,2291.000000, 0.542532,0.457468, maf-5-some-pop 671 chr1 11286177 11286178 rs12124983 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop 671 chr1 11286217 11286218 rs10864494 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 671 chr1 11288757 11288758 rs1064261 0 - G G C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 33 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA,WI_SSAHASNP, 4 A,C,G,T, 3508.000000,1500.000000,1500.000000,3508.000000, 0.350240,0.149760,0.149760,0.350240, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11289160 11289161 rs2076655 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop 671 chr1 11293791 11293792 rs11121703 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1805.000000,3203.000000, 0.360423,0.639577, maf-5-some-pop,maf-5-all-pops 671 chr1 11293958 11293959 rs11121704 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1498.000000,3510.000000, 0.299121,0.700879, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11299510 11299511 rs7544489 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11301713 11301714 rs1135172 0 - A A C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 InconsistentAlleles 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIPGA, 4 A,C,G,T, 1805.000000,3203.000000,3203.000000,1805.000000, 0.180212,0.319788,0.319788,0.180212, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11301840 11301841 rs2076656 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,IMCJ-GDT,JDRF_WT_DIL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,C, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop 671 chr1 11302064 11302065 rs11121706 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3203.000000,1805.000000, 0.639577,0.360423, maf-5-some-pop,maf-5-all-pops 671 chr1 11304719 11304720 rs4845858 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2293.000000,2715.000000, 0.457867,0.542133, maf-5-some-pop 671 chr1 11325520 11325521 rs6540965 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3373.000000,1635.000000, 0.673522,0.326478, maf-5-some-pop,maf-5-all-pops 671 chr1 11325909 11325910 rs6671083 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3370.000000,1638.000000, 0.672923,0.327077, maf-5-some-pop,maf-5-all-pops 671 chr1 11347491 11347492 rs17036631 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop 671 chr1 11360192 11360193 rs12133272 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4277.000000,731.000000, 0.854034,0.145966, maf-5-some-pop 671 chr1 11360956 11360957 rs2744815 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop 671 chr1 11360976 11360977 rs12137596 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop 671 chr1 11361426 11361427 rs2744816 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop 671 chr1 11364134 11364135 rs11121718 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,genotype-conflict 671 chr1 11364919 11364920 rs11121720 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 926.000000,4082.000000, 0.184904,0.815096, maf-5-some-pop 671 chr1 11375058 11375059 rs12143691 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 671 chr1 11383838 11383839 rs4845992 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 671 chr1 11387621 11387622 rs2744826 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop 671 chr1 11388732 11388733 rs17036666 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop,genotype-conflict 671 chr1 11395770 11395771 rs2993664 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 3535.000000,1473.000000,1473.000000,3535.000000, 0.352935,0.147065,0.147065,0.352935, maf-5-some-pop,maf-5-all-pops 671 chr1 11396833 11396834 rs3120821 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1265.000000,3743.000000,3743.000000,1265.000000, 0.126298,0.373702,0.373702,0.126298, maf-5-some-pop,maf-5-all-pops 671 chr1 11400408 11400409 rs3120819 0 - A A G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 2741.000000,2267.000000,2267.000000,2741.000000, 0.273662,0.226338,0.226338,0.273662, maf-5-some-pop,maf-5-all-pops,genotype-conflict 671 chr1 11400566 11400567 rs2993660 0 - C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,genotype-conflict 671 chr1 11401744 11401745 rs2982384 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1506.000000,3502.000000, 0.300719,0.699281, maf-5-some-pop,maf-5-all-pops 671 chr1 11402748 11402749 rs3124632 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1672.000000,3336.000000, 0.333866,0.666134, maf-5-some-pop,maf-5-all-pops 672 chr1 11404631 11404632 rs3010228 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3101.000000,1907.000000, 0.619209,0.380791, maf-5-some-pop,maf-5-all-pops 672 chr1 11411431 11411432 rs2788558 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 3756.000000,1252.000000,1252.000000,3756.000000, 0.375000,0.125000,0.125000,0.375000, maf-5-some-pop,genotype-conflict 672 chr1 11414171 11414172 rs11121722 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2603.000000,2405.000000, 0.519768,0.480232, maf-5-some-pop 672 chr1 11415658 11415659 rs10864499 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2637.000000,2371.000000, 0.526558,0.473442, maf-5-some-pop,maf-5-all-pops 672 chr1 11416251 11416252 rs733761 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 672 chr1 11417981 11417982 rs2788549 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 4 A,C,G,T, 422.000000,4586.000000,4586.000000,422.000000, 0.042133,0.457867,0.457867,0.042133, maf-5-some-pop 672 chr1 11419810 11419811 rs2788541 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 11 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 535.000000,4473.000000,4473.000000,535.000000, 0.053415,0.446585,0.446585,0.053415, maf-5-some-pop 672 chr1 11419867 11419868 rs2744854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1847.000000,3161.000000, 0.368810,0.631190, maf-5-some-pop,maf-5-all-pops 672 chr1 11421814 11421815 rs2744857 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2054.000000,2954.000000, 0.410144,0.589856, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11425698 11425699 rs17036706 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 672 chr1 11427890 11427891 rs2788568 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 4 A,C,G,T, 4868.000000,140.000000,140.000000,4868.000000, 0.486022,0.013978,0.013978,0.486022, maf-5-some-pop 672 chr1 11429688 11429689 rs6540971 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,G, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop 672 chr1 11435941 11435942 rs2335404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2668.000000,2340.000000, 0.532748,0.467252, maf-5-some-pop,maf-5-all-pops 672 chr1 11436156 11436157 rs2335405 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2669.000000,2339.000000, 0.532947,0.467053, maf-5-some-pop,maf-5-all-pops 672 chr1 11444183 11444184 rs2982371 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2510.000000,2498.000000, 0.501198,0.498802, maf-5-some-pop,maf-5-all-pops 672 chr1 11444582 11444583 rs12089828 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 672 chr1 11445222 11445223 rs11121724 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 672 chr1 11446909 11446910 rs6694736 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 672 chr1 11452290 11452291 rs4329522 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,BUSHMAN,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop,genotype-conflict 672 chr1 11453576 11453577 rs6702848 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2550.000000,2458.000000, 0.509185,0.490815, maf-5-some-pop,maf-5-all-pops 672 chr1 11453633 11453634 rs6662762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 672 chr1 11455829 11455830 rs12067947 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 672 chr1 11456535 11456536 rs12094886 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 672 chr1 11461600 11461601 rs6671983 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1898.000000,3110.000000, 0.378994,0.621006, maf-5-some-pop,maf-5-all-pops 672 chr1 11468441 11468442 rs11121728 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2236.000000,2772.000000, 0.446486,0.553514, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11473160 11473161 rs6670949 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,BCM_SSAHASNP,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 672 chr1 11473322 11473323 rs17419268 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 672 chr1 11475862 11475863 rs11576756 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 A,T, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop 672 chr1 11476540 11476541 rs2890085 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2424.000000,2584.000000, 0.484026,0.515974, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11476573 11476574 rs11121730 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2055.000000,2953.000000, 0.410343,0.589657, maf-5-some-pop,maf-5-all-pops 672 chr1 11477293 11477294 rs10864505 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1705.000000,3303.000000, 0.340455,0.659545, maf-5-some-pop,maf-5-all-pops 672 chr1 11477340 11477341 rs11121731 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1123.000000,3885.000000, 0.224241,0.775759, maf-5-some-pop 672 chr1 11480819 11480820 rs3124621 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop 672 chr1 11488202 11488203 rs2077480 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2859.000000,2149.000000, 0.570887,0.429113, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11489174 11489175 rs3123602 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1806.000000,3202.000000, 0.360623,0.639377, maf-5-some-pop,maf-5-all-pops 672 chr1 11489254 11489255 rs877307 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3026.000000,1982.000000, 0.604233,0.395767, maf-5-some-pop,maf-5-all-pops 672 chr1 11493813 11493814 rs11121733 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2886.000000,2122.000000, 0.576278,0.423722, maf-5-some-pop,maf-5-all-pops 672 chr1 11493831 11493832 rs2922240 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1854.000000,3154.000000, 0.370208,0.629792, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11493867 11493868 rs11121734 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1747.000000,3261.000000, 0.348842,0.651158, maf-5-some-pop,maf-5-all-pops 672 chr1 11494850 11494851 rs2379152 0 + A A A/G genomic single unknown 0 0 unknown exact 1 MixedObserved 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1897.000000,3111.000000, 0.378794,0.621206, maf-5-some-pop,maf-5-all-pops 672 chr1 11495006 11495007 rs3099623 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1783.000000,3225.000000, 0.356030,0.643970, maf-5-some-pop,maf-5-all-pops 672 chr1 11496714 11496715 rs3010217 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop 672 chr1 11499387 11499388 rs3099627 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop 672 chr1 11501601 11501602 rs12048424 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3409.000000,1599.000000, 0.680711,0.319289, maf-5-some-pop 672 chr1 11502444 11502445 rs3123606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 672 chr1 11502828 11502829 rs3123607 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2541.000000,2467.000000, 0.507388,0.492612, maf-5-some-pop,maf-5-all-pops 672 chr1 11502850 11502851 rs12146008 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop 672 chr1 11503128 11503129 rs17036855 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 672 chr1 11507302 11507303 rs3010220 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 672 chr1 11516520 11516521 rs11577773 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3289.000000,1719.000000, 0.656749,0.343251, maf-5-some-pop,maf-5-all-pops 672 chr1 11517134 11517135 rs6682318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop,maf-5-all-pops 672 chr1 11519779 11519780 rs2379161 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4143.000000,865.000000, 0.827276,0.172724, maf-5-some-pop 672 chr1 11520951 11520952 rs12124853 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3533.000000,1475.000000, 0.705471,0.294529, maf-5-some-pop,maf-5-all-pops 672 chr1 11522060 11522061 rs12125968 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4354.000000,654.000000, 0.869409,0.130591, maf-5-some-pop 672 chr1 11522311 11522312 rs11121745 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop 672 chr1 11522579 11522580 rs6540977 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,C, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 672 chr1 11524781 11524782 rs7534387 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop 672 chr1 11525532 11525533 rs12046038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3723.000000,1285.000000, 0.743411,0.256589, maf-5-some-pop,maf-5-all-pops,microattr-tpa 672 chr1 11526895 11526896 rs4846008 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop 672 chr1 11527303 11527304 rs7543377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 418.000000,4590.000000, 0.083467,0.916534, maf-5-some-pop,genotype-conflict 672 chr1 11531058 11531059 rs4846010 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop,genotype-conflict 672 chr1 11531075 11531076 rs7546801 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3015.000000,1993.000000, 0.602037,0.397963, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11531917 11531918 rs17036930 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3792.000000,1216.000000, 0.757188,0.242812, maf-5-some-pop,maf-5-all-pops 672 chr1 11532504 11532505 rs7550289 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 672 chr1 11532524 11532525 rs6674181 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 3047.000000,1961.000000, 0.608427,0.391573, maf-5-some-pop,maf-5-all-pops,genotype-conflict 672 chr1 11533010 11533011 rs6674692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,genotype-conflict 672 chr1 11534052 11534053 rs10159458 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 1740.000000,3268.000000, 0.347444,0.652556, maf-5-some-pop 673 chr1 11534541 11534542 rs11121748 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2125.000000,2883.000000, 0.424321,0.575679, maf-5-some-pop,maf-5-all-pops 673 chr1 11547406 11547407 rs12073265 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop 673 chr1 11547582 11547583 rs2379137 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop 673 chr1 11550631 11550632 rs6674713 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 C,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 673 chr1 11551815 11551816 rs12565837 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 673 chr1 11554594 11554595 rs12129875 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 989.000000,4019.000000, 0.197484,0.802516, maf-5-some-pop 673 chr1 11567189 11567190 rs2817637 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3139.000000,1869.000000, 0.626797,0.373203, maf-5-some-pop,maf-5-all-pops 673 chr1 11574365 11574366 rs10864515 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop,maf-5-all-pops,genotype-conflict 673 chr1 11576205 11576206 rs17036950 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,AFFY,CANCER-GENOME,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 673 chr1 11577092 11577093 rs7513927 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 A,C, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 673 chr1 11586584 11586585 rs2817636 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4119.000000,889.000000, 0.822484,0.177516, maf-5-some-pop 673 chr1 11586676 11586677 rs2745260 0 - T T A/G genomic single unknown 0 0 intron exact 1 InconsistentAlleles 18 1000GENOMES,ABI,AFFY,BGI,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 4095.000000,913.000000,913.000000,4095.000000, 0.408846,0.091154,0.091154,0.408846, maf-5-some-pop 673 chr1 11591803 11591804 rs11121762 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,TISHKOFF, 2 A,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 673 chr1 11598669 11598670 rs2817626 0 - G G A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 230.000000,4778.000000,4778.000000,230.000000, 0.022963,0.477037,0.477037,0.022963, maf-5-some-pop 673 chr1 11600357 11600358 rs2594307 0 - C C G/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 10 1000GENOMES,AFFY,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 114.000000,4894.000000,4894.000000,114.000000, 0.011382,0.488618,0.488618,0.011382, maf-5-some-pop 673 chr1 11601053 11601054 rs2745292 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2255.000000,2753.000000,2753.000000,2255.000000, 0.225140,0.274860,0.274860,0.225140, maf-5-some-pop,maf-5-all-pops 673 chr1 11605182 11605183 rs6683331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3909.000000,1099.000000, 0.780551,0.219449, maf-5-some-pop 673 chr1 11607223 11607224 rs2817613 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 17 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 1129.000000,3879.000000,3879.000000,1129.000000, 0.112720,0.387280,0.387280,0.112720, maf-5-some-pop 673 chr1 11607931 11607932 rs2745291 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 2284.000000,2724.000000,2724.000000,2284.000000, 0.228035,0.271965,0.271965,0.228035, maf-5-some-pop,maf-5-all-pops 673 chr1 11608015 11608016 rs41326749 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,AFFY,AFFY_GWHS,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 673 chr1 11614267 11614268 rs2594289 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2231.000000,2777.000000, 0.445487,0.554513, maf-5-some-pop,maf-5-all-pops 673 chr1 11618277 11618278 rs2817597 0 - A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 673 chr1 11618591 11618592 rs2817594 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 20 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 4208.000000,800.000000,800.000000,4208.000000, 0.420128,0.079872,0.079872,0.420128, maf-5-some-pop 673 chr1 11622978 11622979 rs2817581 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP, 2 C,T, 4431.000000,577.000000, 0.884784,0.115216, maf-5-some-pop 673 chr1 11626857 11626858 rs2745285 0 - T T A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 21 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1841.000000,3167.000000,3167.000000,1841.000000, 0.183806,0.316194,0.316194,0.183806, maf-5-some-pop 673 chr1 11627268 11627269 rs2817583 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop 673 chr1 11630121 11630122 rs3912023 0 - C C A/G genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 687.000000,4321.000000,4321.000000,687.000000, 0.068590,0.431410,0.431410,0.068590, maf-5-some-pop 673 chr1 11630229 11630230 rs2745282 0 - T T A/C genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 22 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 4 A,C,G,T, 2027.000000,2981.000000,2981.000000,2027.000000, 0.202376,0.297624,0.297624,0.202376, maf-5-some-pop 673 chr1 11633981 11633982 rs10864520 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4021.000000,987.000000, 0.802915,0.197085, maf-5-some-pop,maf-5-all-pops 673 chr1 11641282 11641283 rs2745276 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 4 A,C,G,T, 1042.000000,3966.000000,3966.000000,1042.000000, 0.104034,0.395966,0.395966,0.104034, maf-5-some-pop,maf-5-all-pops,genotype-conflict 673 chr1 11641443 11641444 rs11121770 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 673 chr1 11645597 11645598 rs2745275 0 - G G C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 951.000000,4057.000000,4057.000000,951.000000, 0.094948,0.405052,0.405052,0.094948, maf-5-some-pop 673 chr1 11647668 11647669 rs2817644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop,maf-5-all-pops 673 chr1 11648199 11648200 rs11589841 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop 673 chr1 11651652 11651653 rs10864525 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 673 chr1 11651909 11651910 rs714829 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 4 A,C,G,T, 4780.000000,228.000000,228.000000,4780.000000, 0.477236,0.022764,0.022764,0.477236, maf-5-some-pop,genotype-conflict 673 chr1 11652204 11652205 rs2335767 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2310.000000,2698.000000, 0.461262,0.538738, maf-5-some-pop,maf-5-all-pops 673 chr1 11652493 11652494 rs4846015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3259.000000,1749.000000, 0.650759,0.349241, maf-5-some-pop,maf-5-all-pops 673 chr1 11661964 11661965 rs6693599 0 + G G C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3332.000000,1676.000000, 0.665335,0.334665, maf-5-some-pop,maf-5-all-pops 673 chr1 11665197 11665198 rs11121778 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3986.000000,1022.000000, 0.795927,0.204073, maf-5-some-pop,genotype-conflict 674 chr1 11670024 11670025 rs1320984 0 - C C A/G genomic single unknown 0 0 ncRNA exact 1 InconsistentAlleles 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2622.000000,2386.000000,2386.000000,2622.000000, 0.261781,0.238219,0.238219,0.261781, maf-5-some-pop,maf-5-all-pops 674 chr1 11671328 11671329 rs1810483 0 - C C G/T genomic single unknown 0 0 intron exact 1 InconsistentAlleles 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 4 A,C,G,T, 178.000000,4830.000000,4830.000000,178.000000, 0.017772,0.482228,0.482228,0.017772, maf-5-some-pop 674 chr1 11671341 11671342 rs909945 0 - T T A/C genomic single unknown 0 0 intron exact 1 InconsistentAlleles 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 2163.000000,2845.000000,2845.000000,2163.000000, 0.215954,0.284046,0.284046,0.215954, maf-5-some-pop,maf-5-all-pops 674 chr1 11678194 11678195 rs761092 0 - A A C/T genomic single unknown 0 0 unknown exact 1 InconsistentAlleles 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 1798.000000,3210.000000,3210.000000,1798.000000, 0.179513,0.320487,0.320487,0.179513, maf-5-some-pop,maf-5-all-pops 674 chr1 11680282 11680283 rs7550768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1219.000000,3789.000000, 0.243411,0.756589, maf-5-some-pop,maf-5-all-pops 674 chr1 11681567 11681568 rs6701965 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2126.000000,2882.000000, 0.424521,0.575479, maf-5-some-pop,maf-5-all-pops 674 chr1 11696835 11696836 rs10864530 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2811.000000,2197.000000, 0.561302,0.438698, maf-5-some-pop,maf-5-all-pops 674 chr1 11697097 11697098 rs6685318 0 + A A A/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops,genotype-conflict 674 chr1 11697181 11697182 rs4846022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2625.000000,2383.000000, 0.524161,0.475839, maf-5-some-pop,maf-5-all-pops 674 chr1 11698901 11698902 rs6671295 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2802.000000,2206.000000, 0.559505,0.440495, maf-5-some-pop,maf-5-all-pops 674 chr1 11702154 11702155 rs7526268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2937.000000,2071.000000, 0.586462,0.413538, maf-5-some-pop,genotype-conflict 674 chr1 11717299 11717300 rs12139487 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop,maf-5-all-pops 674 chr1 11722687 11722688 rs3125815 0 - G G C/T genomic single unknown 0 0 near-gene-3,near-gene-5,untranslated-3 exact 1 InconsistentAlleles 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 824.000000,4184.000000,4184.000000,824.000000, 0.082268,0.417732,0.417732,0.082268, maf-5-some-p